RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine
reductase [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
           dehydrogenase {Neisseria meningitidis [TaxId: 487]}
          Length = 229

 Score = 31.8 bits (71), Expect = 0.026
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 53  PVTSQPDFAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKW 112
            V         +  +  +  L    + +    +        ++C I    R         
Sbjct: 109 KVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISA 168

Query: 113 LRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
            + G     RG I +D   +T+ P   ++
Sbjct: 169 EKAGVAVTDRGFIEVDKQMRTNVP--HIY 195


>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
          {Haemophilus ducreyi [TaxId: 730]}
          Length = 154

 Score = 29.5 bits (66), Expect = 0.12
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 9  LSILGGKAKPCDDPNEALLERIPSQN 34
           + LG     C D +  +   IP+  
Sbjct: 73 FAFLGKGTTDCKDTDHTVFNLIPTNT 98


>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
           {Trypanosoma cruzi [TaxId: 5693]}
          Length = 238

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 6/77 (7%), Positives = 19/77 (24%)

Query: 60  FAHMILDYIPKDWLIESKSLKLFMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYW 119
           +  +    +         +  +       H         ++            L+     
Sbjct: 125 WGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVM 184

Query: 120 YPRGGIPIDIFWQTSAP 136
              GG+ +D + +T+  
Sbjct: 185 IKNGGVQVDEYSRTNVS 201


>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
           coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
           py2 [TaxId: 35809]}
          Length = 261

 Score = 25.3 bits (54), Expect = 2.4
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 112 WLRIGAYWYPRGGIPIDIFWQTSAPPEGVF 141
              +G    P+G + ++ + QTS P   V+
Sbjct: 200 AKILGLDLGPKGEVLVNEYLQTSVP--NVY 227


>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 342

 Score = 24.8 bits (53), Expect = 3.6
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 29  RIPSQNKNLNYVVRFTIPEFTSLCPVTSQPDFAHMILDYIPKDWLIESKS 78
            +  +N+  +      +P  +  CP+     FA ++   IP+DW  E  +
Sbjct: 296 EMYYRNETQHEPYPLMLPGCSPSCPLE---RFAELVGPVIPQDWSTECMT 342


>d1ftra1 d.58.33.1 (A:1-148)
           Formylmethanofuran:tetrahydromethanopterin
           formyltransferase {Archaeon Methanopyrus kandleri
           [TaxId: 2320]}
          Length = 148

 Score = 24.3 bits (53), Expect = 4.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAY 118
           +F E     +AR L+T    KW  I   
Sbjct: 11  TFAEAFEAKMARVLITAASHKWAMIAVK 38


>d1m5sa1 d.58.33.1 (A:1-145)
           Formylmethanofuran:tetrahydromethanopterin
           formyltransferase {Archaeon Methanosarcina barkeri
           [TaxId: 2208]}
          Length = 145

 Score = 24.3 bits (53), Expect = 5.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 91  SFHEDCTIYIARRLVTILDPKWLRIGAY 118
           ++ E   I IAR L+T    +W  + A 
Sbjct: 11  TYAEAFPIKIARVLITAATKRWALVAAT 38


>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
           C-terminal domain {Porphyromonas gingivalis [TaxId:
           837]}
          Length = 81

 Score = 24.0 bits (52), Expect = 6.2
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 90  HSFHEDCTIYIARRLVTILDPKWLR 114
            +F  +  + +  + + I+D   L+
Sbjct: 51  STFVSERMLALDGKRIKIIDCDRLQ 75


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 23.6 bits (51), Expect = 8.2
 Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)

Query: 20 DDPNEALLERIPSQNKNLNYVVRFTIPEF 48
              ++      +      +V  F IPEF
Sbjct: 23 GSKTDSWFNE--TLIGGRAFVSDFKIPEF 49


>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
           domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
           [TaxId: 29339]}
          Length = 263

 Score = 23.3 bits (50), Expect = 8.6
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 20  DDPNEALLERIPSQNKNLNYVVRFTIPEFTS------LCPVTSQPDFAHMIL--DYI--P 69
           +     +   I S    +  +    +P+F        L P+ +Q    H+    D I   
Sbjct: 136 NPTQNPVPLSITSSVNTMQQLFLNRLPQFQIQGYQLLLLPLFAQAANMHLSFIRDVILNA 195

Query: 70  KDWLIESKSLKLFMASFRNH 89
            +W I + +L+ +    RN+
Sbjct: 196 DEWGISAATLRTYRDYLRNY 215


>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 404

 Score = 23.4 bits (50), Expect = 9.1
 Identities = 2/18 (11%), Positives = 8/18 (44%)

Query: 18 PCDDPNEALLERIPSQNK 35
             D  +  ++  P+ ++
Sbjct: 8  ETKDTWDRPVDFTPTNDE 25


>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 223

 Score = 23.3 bits (49), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 121 PRGGIPIDIFWQTSAPPEGVF 141
            RG I +D   +TS P   +F
Sbjct: 169 NRGLIEVDQQCRTSVP--NIF 187


>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 23.2 bits (49), Expect = 10.0
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 9   LSILGGKAKPCDDPNEALLERIPSQNKNL--------NYVVRFTI 45
           L ++  + K  D  NEALLERI S  K           +V+RF I
Sbjct: 406 LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAI 450


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,072
Number of extensions: 29789
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 17
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.4 bits)