HHsearch alignment for GI: 254780345 and conserved domain: COG0781
>COG0781 NusB Transcription termination factor [Transcription].
Probab=100.00 E-value=1.6e-33 Score=221.67 Aligned_cols=143 Identities=37% Similarity=0.539 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 132346999999999999995699-9899999999853100132211201443439999999999999899999999974
Q gi|254780345|r 12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 (170)
Q Consensus 12 ~~~~r~~aR~~aiq~Ly~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~ 90 (170)
T Consensus 6 ~~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~ 79 (151)
T COG0781 6 PKLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVEN------ELDIELADSEYFRSLVKGVLENQEELDELISPH 79 (151)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31258999999999999998658832567899999998621------210145349999999999999799999999998
Q ss_pred HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
T Consensus 80 L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~~~~~ 149 (151)
T COG0781 80 LKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKLRPKE 149 (151)
T ss_pred HCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 806-9888823999999999999999647999751299999999996778733779999999998742202