HHsearch alignment for GI: 254780345 and conserved domain: COG0781

>COG0781 NusB Transcription termination factor [Transcription].
Probab=100.00  E-value=1.6e-33  Score=221.67  Aligned_cols=143  Identities=37%  Similarity=0.539  Sum_probs=120.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             132346999999999999995699-9899999999853100132211201443439999999999999899999999974
Q gi|254780345|r   12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC   90 (170)
Q Consensus        12 ~~~~r~~aR~~aiq~Ly~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~   90 (170)
T Consensus         6 ~~~~R~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~   79 (151)
T COG0781           6 PKLTRRQARELAVQALYQWELSGSVSAEDILEDIEEEFVEN------ELDIELADSEYFRSLVKGVLENQEELDELISPH   79 (151)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             31258999999999999998658832567899999998621------210145349999999999999799999999998


Q ss_pred             HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             10357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r   91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR  161 (170)
Q Consensus        91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~  161 (170)
T Consensus        80 L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~~~~~  149 (151)
T COG0781          80 LKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKLRPKE  149 (151)
T ss_pred             HCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             806-9888823999999999999999647999751299999999996778733779999999998742202