HHsearch alignment for GI: 254780345 and conserved domain: cd00620
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.92 E-value=2.8e-24 Score=165.94 Aligned_cols=124 Identities=23% Similarity=0.221 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999999999569998999999998531001322112014434399999999999998999999999741035763
Q gi|254780345|r 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 (170)
Q Consensus 18 ~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~ 97 (170)
T Consensus 2 naR~~A~~iL~~V~~~~~~~~~~l~~~~~------------~~l~~~Dra~~~~lv~g~lR~~~~ld~~l~~~l~~p--~ 67 (126)
T cd00620 2 NARSTAAEVLRDVLQRGASLNAVLSALQK------------KDKSDRDRGLATELVYGTLRWLALLDWIINPLLKKP--D 67 (126)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C
T ss_conf 89999999999999679989999999886------------579988899999999999981999999999985777--1
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 32353489999999999864355781033988999999833877231499999999952
Q gi|254780345|r 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 (170)
Q Consensus 98 ~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~ 156 (170)
T Consensus 68 ~~~~~~~~~lLrlg~yql~~~-~~p~~A~VneaV~lak~~~~~~~~~lVNAVLR~~~Re 125 (126)
T cd00620 68 VGKDPDVRNLLRLGLYQLLYL-DVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 107999999999999998707-9996106999999999868997666138983087625