HHsearch alignment for GI: 254780345 and conserved domain: pfam01029
>pfam01029 NusB NusB family. The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.
Probab=99.97 E-value=6.1e-30 Score=200.09 Aligned_cols=125 Identities=32% Similarity=0.460 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999999999569998999999998531001322112014434399999999999998999999999741035763
Q gi|254780345|r 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 (170)
Q Consensus 18 ~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~ 97 (170)
T Consensus 2 ~aR~~a~q~L~~~~~~~~~~~~~l~~~~~------------~~~~~~d~~~~~~l~~gv~~~~~~id~~i~~~~-~~~~~ 68 (126)
T pfam01029 2 NARELALQALYAVEERGASLNELLDKLLE------------ADLDERDRAFATELVYGVLRNLEELDALIAKLL-ENWPL 68 (126)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHH------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCH
T ss_conf 49999999999998609899999999987------------189889999999999999998999999999885-59996
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 3235348999999999986435578103398899999983387723149999999995
Q gi|254780345|r 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 (170)
Q Consensus 98 ~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k 155 (170)
T Consensus 69 ~~l~~~~~~iLr~a~~El~~~~~~p~~~~InE~v~lak~~~~~~~~~fvNaVL~~i~r 126 (126)
T pfam01029 69 ERLDPVDRAILRLAAYELLYLDDIPPHVAINEAVELAKKFGGEKSAGFVNGVLRKIAR 126 (126)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 6659999999999999998578998244589999999987788643028999887549