HHsearch alignment for GI: 254780345 and conserved domain: pfam09185
>pfam09185 DUF1948 Domain of unknown function (DUF1948). Members of this family of Mycoplasma hypothetical proteins adopt a helical structure, with one central alpha-helix surrounded by five others, in a NusB-like fold. Their function has not, as yet, been determined.
Probab=97.35 E-value=0.01 Score=35.88 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 346999999999999995-69998999999998531001----3221120144343999999999999989999999997
Q gi|254780345|r 15 RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCAD----TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89 (170)
Q Consensus 15 ~r~~aR~~aiq~Ly~~~~-~~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~ 89 (170)
T Consensus 2 trtqrriaivefifa~lfflpk~ad~iqa~fldyd~~er~lndwqk~ivk~fse~~~~f~~~ie~qq~knq~eiqskyn- 80 (140)
T pfam09185 2 TRTQRRIAIVEFIFALLFFLPKEADQIQAAFLDYDTKERPLNDWQKEIVKAFSENCFEFIEKIEEQQLKNQAEIQSKYN- 80 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 5224557799999999997745188999999636888787207899999999999999999999999865899998873-
Q ss_pred HHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 4103576332353489999999999864355781033988999999833877231499999999
Q gi|254780345|r 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 (170)
Q Consensus 90 ~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki 153 (170)
T Consensus 81 ----kisgkkidllt~avilcalseq~-a~~tdkplliseallimdhysq~~ekkqthalldkl 139 (140)
T pfam09185 81 ----KISGKKIDLLTKAVILCALSEQH-AHATDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 139 (140)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf ----05540425999999999823877-503577535889999998773142577799999842