HHsearch alignment of GI: 254780345 and MMDB domain: 2jr0_A_

>2jr0_A (A:) Protein NUSB, N utilization substance protein B homolog; antiterminator, transcription; NMR {Aquifex aeolicus}
Probab=99.98  E-value=9.7e-32  Score=210.55  Aligned_cols=141  Identities=23%  Similarity=0.295  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r   13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT   92 (170)
Q Consensus        13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~   92 (170)
                      +..|+.+|+.|+|+||+++.++.++.+++..+..+.          ......|+.|++++++|++++...||.+|++++ 
T Consensus         1 M~~r~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~~----------~~~~~~d~~~~~~l~~gv~~~~~~ld~~i~~~l-   69 (148)
T 2jr0_A            1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK----------NIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-   69 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHT----------TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTT-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             961899999999999998740979999999999886----------314524999999998789984999999999853-


Q ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             357633235348999999999986435578103398899999983387723149999999995233320378
Q gi|254780345|r   93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC  164 (170)
Q Consensus        93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~  164 (170)
                      ++|+++|+++++++|||+|+||++|++++|++++|||||+|||.|++++++||||||||+++++.+......
T Consensus        70 ~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvIneaVelak~~~~~~~~~fVNaVL~~i~r~~~~~~~~~  141 (148)
T 2jr0_A           70 KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEE  141 (148)
T ss_dssp             TTCCTTSSCHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHC
T ss_conf             058778888999999999999997635799741699999999996888643008999999999622023321