HHsearch alignment of GI: 254780345 and MMDB domain: 2jr0_A_
>2jr0_A (A:) Protein NUSB, N utilization substance protein B homolog; antiterminator, transcription; NMR {Aquifex aeolicus}
Probab=99.98 E-value=9.7e-32 Score=210.55 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170)
Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170)
+..|+.+|+.|+|+||+++.++.++.+++..+..+. ......|+.|++++++|++++...||.+|++++
T Consensus 1 M~~r~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~~----------~~~~~~d~~~~~~l~~gv~~~~~~ld~~i~~~l- 69 (148)
T 2jr0_A 1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK----------NIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL- 69 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHT----------TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTT-
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf 961899999999999998740979999999999886----------314524999999998789984999999999853-
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 357633235348999999999986435578103398899999983387723149999999995233320378
Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 (170)
Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~ 164 (170)
++|+++|+++++++|||+|+||++|++++|++++|||||+|||.|++++++||||||||+++++.+......
T Consensus 70 ~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvIneaVelak~~~~~~~~~fVNaVL~~i~r~~~~~~~~~ 141 (148)
T 2jr0_A 70 KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEE 141 (148)
T ss_dssp TTCCTTSSCHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHC
T ss_conf 058778888999999999999997635799741699999999996888643008999999999622023321