HHsearch alignment of GI: 254780345 and MMDB domain: 3d3b_A_
>3d3b_A (A:) Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.97 E-value=2.3e-31 Score=208.35 Aligned_cols=135 Identities=28% Similarity=0.361 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170)
Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170)
..+|+.+|+.|+|+||+++.++.++++++..+... ..+++.|++|+++++.|++++...||.+|.+++
T Consensus 5 ~~~~~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~-----------~~~~~~d~~~~~~lv~~~~~~~~~id~~i~~~l- 72 (141)
T 3d3b_A 5 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 72 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------SCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG-
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 85789999999999999984699999999999985-----------455535799999999999972999999999988-
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 35763323534899999999998643557810339889999998338772314999999999523332
Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 (170)
Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~ 160 (170)
+|+++|+++++++|||+|+||++|++++|++++|||||++||.|+++++++|||||||++.|+.+..
T Consensus 73 -~~~~~rl~~~~r~iLr~a~~El~~~~~~p~~vvInEaVelak~~~~~~~~~fVNaVL~~i~r~~~~~ 139 (141)
T 3d3b_A 73 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 139 (141)
T ss_dssp -TTCSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf -8779863789999999999999866477861119999999999689972033899999999984736