Query gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62] Match_columns 170 No_of_seqs 111 out of 2231 Neff 7.9 Searched_HMMs 33803 Date Wed Jun 1 12:19:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780345.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jr0_A Protein NUSB, N utiliz 100.0 9.7E-32 2.9E-36 210.5 15.0 141 13-164 1-141 (148) 2 >1tzv_A NUSB protein, N utiliz 100.0 5.5E-32 1.6E-36 212.0 13.6 139 12-162 1-139 (142) 3 >1eyv_A NUSB protein, N-utiliz 100.0 4.8E-32 1.4E-36 212.4 13.3 144 11-163 5-148 (156) 4 >3d3b_A Protein NUSB, N utiliz 100.0 2.3E-31 6.7E-36 208.3 14.2 135 13-160 5-139 (141) 5 >1sqg_A SUN protein, FMU prote 100.0 1.3E-29 3.8E-34 197.7 13.2 135 13-163 1-135 (142) 6 >1q8c_A Hypothetical protein M 96.7 0.012 3.5E-07 35.1 8.1 127 15-153 13-150 (151) 7 >2yxl_A PH0851 protein, 450AA 91.8 0.82 2.4E-05 24.0 7.9 85 66-154 50-138 (143) 8 >1qqe_A Vesicular transport pr 67.7 1.4 4E-05 22.7 0.2 51 105-155 28-78 (120) 9 3c8g_A A Possible Transciption 65.3 8.7 0.00026 17.8 4.5 95 23-119 73-170 (172) 10 >2i5u_A DNAD domain protein; s 53.9 14 0.00041 16.6 3.5 33 123-156 41-73 (83) 11 >2zc2_A DNAD-like replication 39.7 23 0.00068 15.2 3.5 52 100-157 18-69 (78) 12 >1v54_E Cytochrome C oxidase p 33.7 29 0.00085 14.7 3.8 52 103-154 24-76 (109) 13 >1sfu_A 34L protein; protein/Z 33.6 29 0.00085 14.7 2.9 37 129-167 31-67 (75) 14 >3eyi_A Z-DNA-binding protein 33.4 29 0.00086 14.6 3.1 47 112-165 15-61 (72) 15 >1qgp_A Protein (double strand 30.9 32 0.00095 14.4 3.0 34 130-165 34-67 (77) 16 >1qbj_A Protein (double-strand 24.5 42 0.0012 13.7 3.0 33 130-164 30-62 (81) 17 >1td6_A F10_ORF294, hypothetic 22.5 46 0.0014 13.5 3.0 52 63-136 25-76 (97) 18 >3h4c_A Transcription factor T 22.2 35 0.001 14.1 1.1 20 120-139 26-45 (103) 19 >3dfg_A Xcrecx, regulatory pro 22.1 21 0.00062 15.5 -0.1 33 1-33 1-33 (63) 20 >1wxq_A GTP-binding protein; s 21.7 45 0.0013 13.5 1.5 68 80-150 16-92 (95) 21 >1u2z_A Histone-lysine N-methy 20.8 50 0.0015 13.2 3.6 52 100-151 43-95 (104) No 1 >>2jr0_A Protein NUSB, N utilization substance protein B homolog; antiterminator, transcription; NMR {Aquifex aeolicus} (A:) Probab=99.98 E-value=9.7e-32 Score=210.55 Aligned_cols=141 Identities=23% Similarity=0.295 Sum_probs=128.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410 Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170) Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170) +..|+.+|+.|+|+||+++.++.++.+++..+..+. ......|+.|++++++|++++...||.+|++++ T Consensus 1 M~~r~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~~----------~~~~~~d~~~~~~l~~gv~~~~~~ld~~i~~~l- 69 (148) T 2jr0_A 1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK----------NIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL- 69 (148) T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHT----------TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTT- T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_conf 961899999999999998740979999999999886----------314524999999998789984999999999853- Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 357633235348999999999986435578103398899999983387723149999999995233320378 Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 (170) Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~ 164 (170) ++|+++|+++++++|||+|+||++|++++|++++|||||+|||.|++++++||||||||+++++.+...... T Consensus 70 ~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvIneaVelak~~~~~~~~~fVNaVL~~i~r~~~~~~~~~ 141 (148) T 2jr0_A 70 KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEE 141 (148) T ss_dssp TTCCTTSSCHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSCCC T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHC T ss_conf 058778888999999999999997635799741699999999996888643008999999999622023321 No 2 >>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} (A:) Probab=99.98 E-value=5.5e-32 Score=212.03 Aligned_cols=139 Identities=32% Similarity=0.430 Sum_probs=127.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 13234699999999999999569998999999998531001322112014434399999999999998999999999741 Q gi|254780345|r 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 (170) Q Consensus 12 ~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l 91 (170) |..+|+.+|+.|+|+||++++.+.+.++++..+.. ...++..|+.|++++++|++++...+|.+|.+++ T Consensus 1 Mk~~r~~~R~~a~q~L~~~~~~~~~~~~~l~~~~~-----------~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~l 69 (142) T 1tzv_A 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL-----------DETYDKKAKEDARRYIRGIKENLSMIDDLISRYL 69 (142) T ss_dssp CCCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHC-----------CTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99827999999999999998619985999999998-----------6435656799999999999980999999999853 Q ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 03576332353489999999999864355781033988999999833877231499999999952333203 Q gi|254780345|r 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162 (170) Q Consensus 92 ~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~ 162 (170) ++|+++|++.++++|||+|+||+++++++|++++|||||++||.|++++++||||||||+++|+.+..+. T Consensus 70 -~~~~~~rl~~~~r~iLr~a~~El~~~~~~p~~vvInEaVelak~~~~~~~~~fVNaVL~~i~k~~~~~~~ 139 (142) T 1tzv_A 70 -EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK 139 (142) T ss_dssp -SSSCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGGG T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC T ss_conf -1588688878999999999999986233420389999999999868886331189999999986595101 No 3 >>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} (A:) Probab=99.98 E-value=4.8e-32 Score=212.38 Aligned_cols=144 Identities=28% Similarity=0.410 Sum_probs=128.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 81323469999999999999956999899999999853100132211201443439999999999999899999999974 Q gi|254780345|r 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 (170) Q Consensus 11 ~~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~ 90 (170) +.+.+|+.+|+.|+|+||+++..+.+.++++..+..... ...+...|+.|++.++.|+.++...||.+|.++ T Consensus 5 ~~~~~r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~~~--------~~~l~~~d~~~~~~lv~~~~~~~~~id~~I~~~ 76 (156) T 1eyv_A 5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAE--------AKPDIARLHPYTAAVARGVSEHAAHIDDLITAH 76 (156) T ss_dssp ----CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--------HCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTT T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 987638999999999999998619999999999998764--------021248899999999999999799999999987 Q ss_pred HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 1035763323534899999999998643557810339889999998338772314999999999523332037 Q gi|254780345|r 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 (170) Q Consensus 91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~ 163 (170) + ++|+++|+++++++|||+|+||+++++++|++++|||||++||.|++++++||||||||+++|+.+..... T Consensus 77 ~-~~~~~~rl~~v~r~iLria~~El~~~~~~p~~vvInEaV~lak~~~~~~~~~fVNaVL~~i~r~~~~~~~~ 148 (156) T 1eyv_A 77 L-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQLRAA 148 (156) T ss_dssp S-TTCCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC--------- T ss_pred C-CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 3-49996775999999999999999858799972319999999998688874203799999998834777777 No 4 >>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3d3c_A 3imq_A 1ey1_A (A:) Probab=99.97 E-value=2.3e-31 Score=208.35 Aligned_cols=135 Identities=28% Similarity=0.361 Sum_probs=124.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410 Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170) Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170) ..+|+.+|+.|+|+||+++.++.++++++..+... ..+++.|++|+++++.|++++...||.+|.+++ T Consensus 5 ~~~~~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~-----------~~~~~~d~~~~~~lv~~~~~~~~~id~~i~~~l- 72 (141) T 3d3b_A 5 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL- 72 (141) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------SCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG- T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- T ss_conf 85789999999999999984699999999999985-----------455535799999999999972999999999988- Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 35763323534899999999998643557810339889999998338772314999999999523332 Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160 (170) Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~ 160 (170) +|+++|+++++++|||+|+||++|++++|++++|||||++||.|+++++++|||||||++.|+.+.. T Consensus 73 -~~~~~rl~~~~r~iLr~a~~El~~~~~~p~~vvInEaVelak~~~~~~~~~fVNaVL~~i~r~~~~~ 139 (141) T 3d3b_A 73 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN 139 (141) T ss_dssp -TTCSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTT T ss_pred -HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC T ss_conf -8779863789999999999999866477861119999999999689972033899999999984736 No 5 >>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} (A:1-142) Probab=99.97 E-value=1.3e-29 Score=197.75 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=122.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410 Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170) Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170) +.+|+.+|+.|+|+||+++..+.++++++..+.. .++..|+.|++++++|++++...+|.+|.+++ T Consensus 1 M~~~~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-------------~~~~~d~~~~~~lv~g~~~~~~~ld~~I~~~l- 66 (142) T 1sqg_A 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLSQLDWLINKLM- 66 (142) T ss_dssp ----CCHHHHHHHHHHHHHHHCCCHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_conf 9987539999999999999769979999999986-------------39999999999999999987999999999861- Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 35763323534899999999998643557810339889999998338772314999999999523332037 Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163 (170) Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~ 163 (170) +|+++++++++++|||+|+||+++. ++|++++|||+|++||.|++++++|||||||++++|+.+..... T Consensus 67 -~~~~~~l~~v~r~iLr~a~~El~~~-~~p~~~vineaV~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~ 135 (142) T 1sqg_A 67 -ARPMTGKQRTVHYLIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAE 135 (142) T ss_dssp -SSCCCGGGHHHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHH T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf -7998643589999999999998735-69863333056655443045443333322456666654332432 No 6 >>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3844637, BSGC structure funded by NIH, protein structure initiative, PSI; 2.00A {Mycoplasma genitalium} (A:) Probab=96.68 E-value=0.012 Score=35.09 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=88.6 Q ss_pred CHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- Q ss_conf 346999999999999995-699989999999985310013221120144343999999999999989999999997410- Q gi|254780345|r 15 RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT- 92 (170) Q Consensus 15 ~r~~aR~~aiq~Ly~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~- 92 (170) .|+..|.+++..+|...| -....+.+-..|.++.- .+..+ -.|-+.+|....++.-.....|...-- T Consensus 13 trtqrriaivefif~~lfflpk~a~~iqa~fl~yd~-------~er~l----n~wqk~ivk~fse~~~~f~~~ie~qq~~ 81 (151) T 1q8c_A 13 TRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDT-------KERQL----NEWQKLIVKAFSENIFSFQKKIEEQQLK 81 (151) T ss_dssp CHHHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHTCC-------TTTCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 499999999999999881885328999999998410-------01156----7899999999999999999998877688 Q ss_pred ---------CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf ---------3576332353489999999999864355781033988999999833877231499999999 Q gi|254780345|r 93 ---------EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 (170) Q Consensus 93 ---------~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki 153 (170) .+.+-++++..-.++..+|+.|.. ...+..+..|+|++-+-..|+...+.+-..|.||++ T Consensus 82 nq~eiq~kynkisgkkidllt~avilcalseq~-a~~tdkplliseallimdhysq~~ekkqthalldkl 150 (151) T 1q8c_A 82 NQLEIQTKYNKISGKKIDLLTTAVVLCALSEQK-AHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 150 (151) T ss_dssp CCCSCCCC--------CCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 899988875279787723999999999999981-369997420999999999868985167899999850 No 7 >>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} (A:1-143) Probab=91.83 E-value=0.82 Score=23.99 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=56.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCH Q ss_conf 99999999999998999999999741035763323534899999999998643557810339889999998338772314 Q gi|254780345|r 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145 (170) Q Consensus 66 ~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~f 145 (170) -+.++-|++.+++.++-||.+|...+ +-+-.-+++.+++.||+|++...|. +......=+.-. .+-.|.+.+...+ T Consensus 50 drvlT~I~Y~i~k~~GllDkiI~div--GV~p~iLdpwlRaALRVav~v~~F~-~~~~~tl~~lr~-~~a~flS~~THPy 125 (143) T 2yxl_A 50 NRVLTMIFYDIMKKQGLIDKVIKEIV--GVTPLILDPWLRAALRVAVDIALFH-DPSSQTIKNLRW-KASDFISSRTHPY 125 (143) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SSCGGGSCHHHHHHHHHHHHHHHHS-CBCHHHHHHHHH-HHHHHHHHHSCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH-HHHHHHHCCCCCH T ss_conf 99999999999988999999999871--8991433999999999999999863-853588889999-9887640134210 Q ss_pred HH----HHHHHHH Q ss_conf 99----9999999 Q gi|254780345|r 146 IN----AVLDKVS 154 (170) Q Consensus 146 VN----aVL~ki~ 154 (170) |- -++++|. T Consensus 126 VGmyy~~~~~~i~ 138 (143) T 2yxl_A 126 VGMYFWDLLDKIF 138 (143) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 1156652003455 No 8 >>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} (A:173-292) Probab=67.73 E-value=1.4 Score=22.67 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=39.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 999999999986435578103398899999983387723149999999995 Q gi|254780345|r 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155 (170) Q Consensus 105 ~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k 155 (170) --.|+.++|.+.....+....++.+|.++--.|.+..+++|++++++.+-. T Consensus 28 ~yflkA~LC~la~~D~v~a~~al~~Y~~~dp~F~~sRE~kll~~lieA~e~ 78 (120) T 1qqe_A 28 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 78 (120) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 999999999998399999999999999858676764999999999999980 No 9 >3c8g_A A Possible Transciptional Regulator Yggd {Shigella Flexneri 2a Str. 2457t} (A:) Probab=65.28 E-value=8.7 Score=17.80 Aligned_cols=95 Identities=9% Similarity=0.152 Sum_probs=48.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHH Q ss_conf 99999999956999899999999853100132211201443439999999999999---899999999974103576332 Q gi|254780345|r 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD---RKQHIDLLISSCLTEKWSFSR 99 (170) Q Consensus 23 aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~---~~~~id~~I~~~l~~~w~~~r 99 (170) -+.++|....-....-..++.|...+....++...-.-.......+++++- .+-+ ....+.+.....+ .-|...| T Consensus 73 RikL~y~LG~Is~~~y~Di~~~~kiRn~l~h~~~~~~F~d~~i~~~i~~l~-~v~~~~~~~~~~~~~~d~~~-~~~~~~R 150 (172) T 3c8g_A 73 ALRLIYALGXXDXWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVN-SITRNATLYDALXAXXFADF-AVWSEAR 150 (172) T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCCCTTSHHHHHHHHTCH-HHHTSHHHHHHHHHHHTC----CCCHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCHHCCCHHH-HHHHHHH T ss_conf 999999718998889998999999999861577777768878999988644-42312667655011058489-9999998 Q ss_pred CCCHHHHHHHHHHHHHHHCC Q ss_conf 35348999999999986435 Q gi|254780345|r 100 LDMILCSILRAGVLELIECH 119 (170) Q Consensus 100 l~~~~~~iLr~a~~El~~~~ 119 (170) ...+.|+.|-+++.|++... T Consensus 151 ~~q~ikS~l~Lait~i~~~l 170 (172) T 3c8g_A 151 FSGXVKTALTLAVTTTLKEL 170 (172) T ss_dssp HHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHC T ss_conf 52158999999999999640 No 10 >>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.50A {Enterococcus faecalis V583} (A:) Probab=53.90 E-value=14 Score=16.59 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=26.2 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 1033988999999833877231499999999952 Q gi|254780345|r 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 (170) Q Consensus 123 ~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~ 156 (170) +.-+|-+|++.|.. .+..+.++|+|||.+=.++ T Consensus 41 ~~eiI~~A~~~av~-~~~~~~~Yi~~IL~~W~~~ 73 (83) T 2i5u_A 41 AEQLIVKAIEIAID-ANARNYNYINAILKDWEQR 73 (83) T ss_dssp HHHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC T ss_conf 99999999999999-5999769999999999994 No 11 >>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159} (A:) Probab=39.71 E-value=23 Score=15.25 Aligned_cols=52 Identities=13% Similarity=0.005 Sum_probs=34.5 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 3534899999999998643557810339889999998338772314999999999523 Q gi|254780345|r 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157 (170) Q Consensus 100 l~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~ 157 (170) +++.+...|.--+-+ ... +.-+|-++++.|.. .+....++|+|||.+=.++. T Consensus 18 ls~~e~~~l~~~~~~----~~~-~~e~i~~A~~~a~~-~~~~~~~Yi~~IL~~W~~~g 69 (78) T 2zc2_A 18 LSPFELEDLQKTVSD----DKT-DPDLVRSALREAVF-NGKTNWNYIQAILRNWRHEG 69 (78) T ss_dssp CCHHHHHHHHHHHTT----TCC-CHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHH----HCC-CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCC T ss_conf 999999999999988----299-99999999999999-59998999999999999949 No 12 >>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (E:) Probab=33.73 E-value=29 Score=14.67 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=41.1 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH Q ss_conf 4899999999998643557810339889999998338-772314999999999 Q gi|254780345|r 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVS 154 (170) Q Consensus 103 ~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~-~~~~~fVNaVL~ki~ 154 (170) +|..-+|-|+-.+.-..-+|.+.||..++.-++...+ .-+.+|.-||=+|.. T Consensus 24 iD~we~rr~lN~l~~~DlVP~P~Ii~aaLrAcRRvND~a~AVR~lE~vK~K~~ 76 (109) T 1v54_E 24 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 76 (109) T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 40999999999974156689909999999999874006999999999999714 No 13 >>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:) Probab=33.64 E-value=29 Score=14.66 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=29.6 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 899999983387723149999999995233320378763 Q gi|254780345|r 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 (170) Q Consensus 129 E~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~~~ 167 (170) .|.+|||.++-+ .+=||.+|=++.++.+..+.+.--| T Consensus 31 tA~~lAk~Lg~~--Kk~VNr~LY~L~~~G~v~~~~~~PP 67 (75) T 1sfu_A 31 TAISLSNRLKIN--KKKINQQLYKLQKEDTVKMVPSNPP 67 (75) T ss_dssp CHHHHHHHTTCC--HHHHHHHHHHHHHTTSEEEECCSSC T ss_pred HHHHHHHHHCCH--HHHHHHHHHHHHHCCEEEEECCCCC T ss_conf 199999886300--8788899999986896544249993 No 14 >>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:) Probab=33.43 E-value=29 Score=14.64 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=32.7 Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999864355781033988999999833877231499999999952333203787 Q gi|254780345|r 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 (170) Q Consensus 112 ~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~ 165 (170) +|+.++.. .|. .++.|||..+-. ..+=||.+|=.+.|+.+....+.+ T Consensus 15 I~~~L~~~-g~~-----~Al~iAk~LGl~-~akeVN~~LY~L~k~g~l~~~~tp 61 (72) T 3eyi_A 15 IYRFLKDN-GPQ-----RALVIAQALGMR-TAKDVNRDLYRMKSRHLLDMDEQS 61 (72) T ss_dssp HHHHHHHH-CSE-----EHHHHHHHTTCC-SGGGTHHHHHHHHHTTSEEECTTT T ss_pred HHHHHHHC-CCC-----HHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99999966-992-----588999985811-177756899999974277766886 No 15 >>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:) Probab=30.90 E-value=32 Score=14.38 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=27.8 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 999999833877231499999999952333203787 Q gi|254780345|r 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165 (170) Q Consensus 130 ~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~ 165 (170) +.+|||.++-+ .+=||.+|=++.++.+..+.+.- T Consensus 34 A~~LAk~lg~~--Kk~vN~~LY~L~k~g~v~~~~~~ 67 (77) T 1qgp_A 34 AHDLSGKLGTP--KKEINRVLYSLAKKGKLQKEAGT 67 (77) T ss_dssp HHHHHHHHCCC--HHHHHHHHHHHHHHTSEEEECSS T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHCCCEEECCCC T ss_conf 99999996988--88889999999987895306998 No 16 >>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:) Probab=24.50 E-value=42 Score=13.69 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.7 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 99999983387723149999999995233320378 Q gi|254780345|r 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164 (170) Q Consensus 130 ~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~ 164 (170) +.+|||.++-+ .+=||.+|=++.++.+..+.+. T Consensus 30 A~~LAk~Lgi~--Kk~vNr~LY~L~k~g~v~~~~~ 62 (81) T 1qbj_A 30 AHDLSGKLGTP--KKEINRVLYSLAKKGKLQKEAG 62 (81) T ss_dssp HHHHHHHHTCC--HHHHHHHHHHHHHTTSEEEESS T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHCCCEEECCC T ss_conf 99999996988--8898999999998788320589 No 17 >>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} (A:210-306) Probab=22.53 E-value=46 Score=13.45 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 34399999999999998999999999741035763323534899999999998643557810339889999998 Q gi|254780345|r 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136 (170) Q Consensus 63 ~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~ 136 (170) +.+..|+.++ ||..+-++ +++ -+++..+-|..-+||... ++++||+|+|-.. T Consensus 25 pv~~efa~ei----------ida~lvs~----fpl--hp~~~~~~la~ki~~yvs------~iv~ne~v~lkd~ 76 (97) T 1td6_A 25 PVNAEFANEI----------IDAFLVSY----FPL--HPPVPLAQLAAKIYEYVS------QIVLNEAVNLKDE 76 (97) T ss_dssp HHHHHHHHHH----------HHHHHHHT----TTS--CCSSCHHHHHHHHHHHHH------HHSSSCCCTTSHH T ss_pred CHHHHHHHHH----------HHHHHHHH----CCC--CCCCCHHHHHHHHHHHHH------HHHHHHHHHCCCC T ss_conf 3788999999----------99999986----778--999899999999999999------9999877750581 No 18 >>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} (A:1-103) Probab=22.18 E-value=35 Score=14.13 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=11.3 Q ss_pred CCCCCCHHHHHHHHHHHHCC Q ss_conf 57810339889999998338 Q gi|254780345|r 120 SVPVEVIISEYVCIAHDFFY 139 (170) Q Consensus 120 ~~p~~vvInE~V~lak~f~~ 139 (170) ..-+..|++.+++||+.|.+ T Consensus 26 s~~~e~Vl~~aIeLar~fvg 45 (103) T 3h4c_A 26 AVLPEPVLDRGIELARAFVG 45 (103) T ss_dssp TTCCHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHH T ss_conf 26858899899999999974 No 19 >>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} (A:1-63) Probab=22.15 E-value=21 Score=15.48 Aligned_cols=33 Identities=12% Similarity=-0.015 Sum_probs=19.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 988856679981323469999999999999956 Q gi|254780345|r 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDII 33 (170) Q Consensus 1 M~~~~~~~~~~~~~~r~~aR~~aiq~Ly~~~~~ 33 (170) |+.+.+........+...+|..|+..|-.-+.+ T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~Al~lLarRehS 33 (63) T 3dfg_A 1 MSEQAPAPKRGRRFKEQTPVQRALGLLVHREHS 33 (63) T ss_dssp ----------------CCHHHHHHHHHHHSCCC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH T ss_conf 988789999888831189999999985133168 No 20 >>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii OT3} (A:120-214) Probab=21.67 E-value=45 Score=13.52 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCH---HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------HCCCCCCCHHHHHH Q ss_conf 999999999741035763323534---899999999998643557810339889999998------33877231499999 Q gi|254780345|r 80 KQHIDLLISSCLTEKWSFSRLDMI---LCSILRAGVLELIECHSVPVEVIISEYVCIAHD------FFYGDEPKFINAVL 150 (170) Q Consensus 80 ~~~id~~I~~~l~~~w~~~rl~~~---~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~------f~~~~~~~fVNaVL 150 (170) ..+|+..|...|.++|. ++.+. ...-+--+++|++.+..++ ...|.+++.-... ...+...+|+..++ T Consensus 16 ~~Ei~~Wi~~il~~~W~--ki~Rk~~~~~~~~~~~L~~~lsG~gi~-~~~V~~al~~~~l~~~l~~W~~ed~~~l~~~~~ 92 (95) T 1wxq_A 16 EREIDYWIYGILSKGWD--KFAKRIKLQKIKLESAIAEHLSGIGVN-ENDVWEAXHKLNLPEDPTKWSQDDLLAFASEIR 92 (95) T ss_dssp HHHHHHHHHHHHHTTTH--HHHSTTTSSCCCHHHHHHHHTGGGTCC-HHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 98888877664003578--899888621114788899999887653-678999997531012221022778888888865 No 21 >>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} (A:71-174) Probab=20.82 E-value=50 Score=13.24 Aligned_cols=52 Identities=15% Similarity=-0.019 Sum_probs=32.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHCCCCCCCHHHHHHH Q ss_conf 353489999999999864355781033988999-9998338772314999999 Q gi|254780345|r 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLD 151 (170) Q Consensus 100 l~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~-lak~f~~~~~~~fVNaVL~ 151 (170) .++++-..=-+-+.-..|.++.-.+..-+|.+. |-+.+...+..+|+++|-+ T Consensus 43 ~~P~~eI~kvie~v~~~Ylpe~~~~~f~~~i~r~L~rA~~~~d~~~F~~~v~~ 95 (104) T 1u2z_A 43 YNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINL 95 (104) T ss_dssp SCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH T ss_conf 68399999999999997397402477378651103664056987998079750 Done!