Query         gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs    111 out of 2231
Neff          7.9 
Searched_HMMs 33803
Date          Wed Jun  1 12:19:10 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780345.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jr0_A Protein NUSB, N utiliz 100.0 9.7E-32 2.9E-36  210.5  15.0  141   13-164     1-141 (148)
  2 >1tzv_A NUSB protein, N utiliz 100.0 5.5E-32 1.6E-36  212.0  13.6  139   12-162     1-139 (142)
  3 >1eyv_A NUSB protein, N-utiliz 100.0 4.8E-32 1.4E-36  212.4  13.3  144   11-163     5-148 (156)
  4 >3d3b_A Protein NUSB, N utiliz 100.0 2.3E-31 6.7E-36  208.3  14.2  135   13-160     5-139 (141)
  5 >1sqg_A SUN protein, FMU prote 100.0 1.3E-29 3.8E-34  197.7  13.2  135   13-163     1-135 (142)
  6 >1q8c_A Hypothetical protein M  96.7   0.012 3.5E-07   35.1   8.1  127   15-153    13-150 (151)
  7 >2yxl_A PH0851 protein, 450AA   91.8    0.82 2.4E-05   24.0   7.9   85   66-154    50-138 (143)
  8 >1qqe_A Vesicular transport pr  67.7     1.4   4E-05   22.7   0.2   51  105-155    28-78  (120)
  9 3c8g_A A Possible Transciption  65.3     8.7 0.00026   17.8   4.5   95   23-119    73-170 (172)
 10 >2i5u_A DNAD domain protein; s  53.9      14 0.00041   16.6   3.5   33  123-156    41-73  (83)
 11 >2zc2_A DNAD-like replication   39.7      23 0.00068   15.2   3.5   52  100-157    18-69  (78)
 12 >1v54_E Cytochrome C oxidase p  33.7      29 0.00085   14.7   3.8   52  103-154    24-76  (109)
 13 >1sfu_A 34L protein; protein/Z  33.6      29 0.00085   14.7   2.9   37  129-167    31-67  (75)
 14 >3eyi_A Z-DNA-binding protein   33.4      29 0.00086   14.6   3.1   47  112-165    15-61  (72)
 15 >1qgp_A Protein (double strand  30.9      32 0.00095   14.4   3.0   34  130-165    34-67  (77)
 16 >1qbj_A Protein (double-strand  24.5      42  0.0012   13.7   3.0   33  130-164    30-62  (81)
 17 >1td6_A F10_ORF294, hypothetic  22.5      46  0.0014   13.5   3.0   52   63-136    25-76  (97)
 18 >3h4c_A Transcription factor T  22.2      35   0.001   14.1   1.1   20  120-139    26-45  (103)
 19 >3dfg_A Xcrecx, regulatory pro  22.1      21 0.00062   15.5  -0.1   33    1-33      1-33  (63)
 20 >1wxq_A GTP-binding protein; s  21.7      45  0.0013   13.5   1.5   68   80-150    16-92  (95)
 21 >1u2z_A Histone-lysine N-methy  20.8      50  0.0015   13.2   3.6   52  100-151    43-95  (104)

No 1  
>>2jr0_A Protein NUSB, N utilization substance protein B homolog; antiterminator, transcription; NMR {Aquifex aeolicus} (A:)
Probab=99.98  E-value=9.7e-32  Score=210.55  Aligned_cols=141  Identities=23%  Similarity=0.295  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r   13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT   92 (170)
Q Consensus        13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~   92 (170)
                      +..|+.+|+.|+|+||+++.++.++.+++..+..+.          ......|+.|++++++|++++...||.+|++++ 
T Consensus         1 M~~r~~aR~~a~q~L~~~~~~~~~~~~~l~~~~~~~----------~~~~~~d~~~~~~l~~gv~~~~~~ld~~i~~~l-   69 (148)
T 2jr0_A            1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK----------NIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL-   69 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHT----------TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTT-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             961899999999999998740979999999999886----------314524999999998789984999999999853-


Q ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             357633235348999999999986435578103398899999983387723149999999995233320378
Q gi|254780345|r   93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC  164 (170)
Q Consensus        93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~  164 (170)
                      ++|+++|+++++++|||+|+||++|++++|++++|||||+|||.|++++++||||||||+++++.+......
T Consensus        70 ~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvIneaVelak~~~~~~~~~fVNaVL~~i~r~~~~~~~~~  141 (148)
T 2jr0_A           70 KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEE  141 (148)
T ss_dssp             TTCCTTSSCHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHC
T ss_conf             058778888999999999999997635799741699999999996888643008999999999622023321


No 2  
>>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} (A:)
Probab=99.98  E-value=5.5e-32  Score=212.03  Aligned_cols=139  Identities=32%  Similarity=0.430  Sum_probs=127.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13234699999999999999569998999999998531001322112014434399999999999998999999999741
Q gi|254780345|r   12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL   91 (170)
Q Consensus        12 ~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l   91 (170)
                      |..+|+.+|+.|+|+||++++.+.+.++++..+..           ...++..|+.|++++++|++++...+|.+|.+++
T Consensus         1 Mk~~r~~~R~~a~q~L~~~~~~~~~~~~~l~~~~~-----------~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~~l   69 (142)
T 1tzv_A            1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL-----------DETYDKKAKEDARRYIRGIKENLSMIDDLISRYL   69 (142)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHC-----------CTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99827999999999999998619985999999998-----------6435656799999999999980999999999853


Q ss_pred             CCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             03576332353489999999999864355781033988999999833877231499999999952333203
Q gi|254780345|r   92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS  162 (170)
Q Consensus        92 ~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~  162 (170)
                       ++|+++|++.++++|||+|+||+++++++|++++|||||++||.|++++++||||||||+++|+.+..+.
T Consensus        70 -~~~~~~rl~~~~r~iLr~a~~El~~~~~~p~~vvInEaVelak~~~~~~~~~fVNaVL~~i~k~~~~~~~  139 (142)
T 1tzv_A           70 -EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKEK  139 (142)
T ss_dssp             -SSSCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGGG
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf             -1588688878999999999999986233420389999999999868886331189999999986595101


No 3  
>>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} (A:)
Probab=99.98  E-value=4.8e-32  Score=212.38  Aligned_cols=144  Identities=28%  Similarity=0.410  Sum_probs=128.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             81323469999999999999956999899999999853100132211201443439999999999999899999999974
Q gi|254780345|r   11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC   90 (170)
Q Consensus        11 ~~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~   90 (170)
                      +.+.+|+.+|+.|+|+||+++..+.+.++++..+.....        ...+...|+.|++.++.|+.++...||.+|.++
T Consensus         5 ~~~~~r~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~~~--------~~~l~~~d~~~~~~lv~~~~~~~~~id~~I~~~   76 (156)
T 1eyv_A            5 KPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAE--------AKPDIARLHPYTAAVARGVSEHAAHIDDLITAH   76 (156)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--------HCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             987638999999999999998619999999999998764--------021248899999999999999799999999987


Q ss_pred             HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             1035763323534899999999998643557810339889999998338772314999999999523332037
Q gi|254780345|r   91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG  163 (170)
Q Consensus        91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~  163 (170)
                      + ++|+++|+++++++|||+|+||+++++++|++++|||||++||.|++++++||||||||+++|+.+.....
T Consensus        77 ~-~~~~~~rl~~v~r~iLria~~El~~~~~~p~~vvInEaV~lak~~~~~~~~~fVNaVL~~i~r~~~~~~~~  148 (156)
T 1eyv_A           77 L-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVMLVTPQLRAA  148 (156)
T ss_dssp             S-TTCCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC---------
T ss_pred             C-CCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             3-49996775999999999999999858799972319999999998688874203799999998834777777


No 4  
>>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermination; HET: NHE; 1.30A {Escherichia coli K12} PDB: 3d3c_A 3imq_A 1ey1_A (A:)
Probab=99.97  E-value=2.3e-31  Score=208.35  Aligned_cols=135  Identities=28%  Similarity=0.361  Sum_probs=124.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r   13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT   92 (170)
Q Consensus        13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~   92 (170)
                      ..+|+.+|+.|+|+||+++.++.++++++..+...           ..+++.|++|+++++.|++++...||.+|.+++ 
T Consensus         5 ~~~~~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~~-----------~~~~~~d~~~~~~lv~~~~~~~~~id~~i~~~l-   72 (141)
T 3d3b_A            5 PAARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL-   72 (141)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------SCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGGG-
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             85789999999999999984699999999999985-----------455535799999999999972999999999988-


Q ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             35763323534899999999998643557810339889999998338772314999999999523332
Q gi|254780345|r   93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK  160 (170)
Q Consensus        93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~  160 (170)
                       +|+++|+++++++|||+|+||++|++++|++++|||||++||.|+++++++|||||||++.|+.+..
T Consensus        73 -~~~~~rl~~~~r~iLr~a~~El~~~~~~p~~vvInEaVelak~~~~~~~~~fVNaVL~~i~r~~~~~  139 (141)
T 3d3b_A           73 -SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPN  139 (141)
T ss_dssp             -TTCSSCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHCTT
T ss_pred             -HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             -8779863789999999999999866477861119999999999689972033899999999984736


No 5  
>>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} (A:1-142)
Probab=99.97  E-value=1.3e-29  Score=197.75  Aligned_cols=135  Identities=19%  Similarity=0.216  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r   13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT   92 (170)
Q Consensus        13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~   92 (170)
                      +.+|+.+|+.|+|+||+++..+.++++++..+..             .++..|+.|++++++|++++...+|.+|.+++ 
T Consensus         1 M~~~~~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-------------~~~~~d~~~~~~lv~g~~~~~~~ld~~I~~~l-   66 (142)
T 1sqg_A            1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLSQLDWLINKLM-   66 (142)
T ss_dssp             ----CCHHHHHHHHHHHHHHHCCCHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_conf             9987539999999999999769979999999986-------------39999999999999999987999999999861-


Q ss_pred             CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             35763323534899999999998643557810339889999998338772314999999999523332037
Q gi|254780345|r   93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG  163 (170)
Q Consensus        93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~  163 (170)
                       +|+++++++++++|||+|+||+++. ++|++++|||+|++||.|++++++|||||||++++|+.+.....
T Consensus        67 -~~~~~~l~~v~r~iLr~a~~El~~~-~~p~~~vineaV~lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~  135 (142)
T 1sqg_A           67 -ARPMTGKQRTVHYLIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAE  135 (142)
T ss_dssp             -SSCCCGGGHHHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             -7998643589999999999998735-69863333056655443045443333322456666654332432


No 6  
>>1q8c_A Hypothetical protein Mg027; structural genomics, NUSB, GI 3844637, BSGC structure funded by NIH, protein structure initiative, PSI; 2.00A {Mycoplasma genitalium} (A:)
Probab=96.68  E-value=0.012  Score=35.09  Aligned_cols=127  Identities=21%  Similarity=0.313  Sum_probs=88.6

Q ss_pred             CHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf             346999999999999995-699989999999985310013221120144343999999999999989999999997410-
Q gi|254780345|r   15 RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT-   92 (170)
Q Consensus        15 ~r~~aR~~aiq~Ly~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~-   92 (170)
                      .|+..|.+++..+|...| -....+.+-..|.++.-       .+..+    -.|-+.+|....++.-.....|...-- 
T Consensus        13 trtqrriaivefif~~lfflpk~a~~iqa~fl~yd~-------~er~l----n~wqk~ivk~fse~~~~f~~~ie~qq~~   81 (151)
T 1q8c_A           13 TRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDT-------KERQL----NEWQKLIVKAFSENIFSFQKKIEEQQLK   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHTCC-------TTTCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             499999999999999881885328999999998410-------01156----7899999999999999999998877688


Q ss_pred             ---------CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             ---------3576332353489999999999864355781033988999999833877231499999999
Q gi|254780345|r   93 ---------EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV  153 (170)
Q Consensus        93 ---------~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki  153 (170)
                               .+.+-++++..-.++..+|+.|.. ...+..+..|+|++-+-..|+...+.+-..|.||++
T Consensus        82 nq~eiq~kynkisgkkidllt~avilcalseq~-a~~tdkplliseallimdhysq~~ekkqthalldkl  150 (151)
T 1q8c_A           82 NQLEIQTKYNKISGKKIDLLTTAVVLCALSEQK-AHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL  150 (151)
T ss_dssp             CCCSCCCC--------CCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             899988875279787723999999999999981-369997420999999999868985167899999850


No 7  
>>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} (A:1-143)
Probab=91.83  E-value=0.82  Score=23.99  Aligned_cols=85  Identities=21%  Similarity=0.194  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf             99999999999998999999999741035763323534899999999998643557810339889999998338772314
Q gi|254780345|r   66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF  145 (170)
Q Consensus        66 ~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~f  145 (170)
                      -+.++-|++.+++.++-||.+|...+  +-+-.-+++.+++.||+|++...|. +......=+.-. .+-.|.+.+...+
T Consensus        50 drvlT~I~Y~i~k~~GllDkiI~div--GV~p~iLdpwlRaALRVav~v~~F~-~~~~~tl~~lr~-~~a~flS~~THPy  125 (143)
T 2yxl_A           50 NRVLTMIFYDIMKKQGLIDKVIKEIV--GVTPLILDPWLRAALRVAVDIALFH-DPSSQTIKNLRW-KASDFISSRTHPY  125 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SSCGGGSCHHHHHHHHHHHHHHHHS-CBCHHHHHHHHH-HHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHH-HHHHHHHCCCCCH
T ss_conf             99999999999988999999999871--8991433999999999999999863-853588889999-9887640134210


Q ss_pred             HH----HHHHHHH
Q ss_conf             99----9999999
Q gi|254780345|r  146 IN----AVLDKVS  154 (170)
Q Consensus       146 VN----aVL~ki~  154 (170)
                      |-    -++++|.
T Consensus       126 VGmyy~~~~~~i~  138 (143)
T 2yxl_A          126 VGMYFWDLLDKIF  138 (143)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             1156652003455


No 8  
>>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} (A:173-292)
Probab=67.73  E-value=1.4  Score=22.67  Aligned_cols=51  Identities=20%  Similarity=0.313  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             999999999986435578103398899999983387723149999999995
Q gi|254780345|r  105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR  155 (170)
Q Consensus       105 ~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k  155 (170)
                      --.|+.++|.+.....+....++.+|.++--.|.+..+++|++++++.+-.
T Consensus        28 ~yflkA~LC~la~~D~v~a~~al~~Y~~~dp~F~~sRE~kll~~lieA~e~   78 (120)
T 1qqe_A           28 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE   78 (120)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             999999999998399999999999999858676764999999999999980


No 9  
>3c8g_A A Possible Transciptional Regulator Yggd {Shigella Flexneri 2a Str. 2457t} (A:)
Probab=65.28  E-value=8.7  Score=17.80  Aligned_cols=95  Identities=9%  Similarity=0.152  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCCHHH
Q ss_conf             99999999956999899999999853100132211201443439999999999999---899999999974103576332
Q gi|254780345|r   23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD---RKQHIDLLISSCLTEKWSFSR   99 (170)
Q Consensus        23 aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~---~~~~id~~I~~~l~~~w~~~r   99 (170)
                      -+.++|....-....-..++.|...+....++...-.-.......+++++- .+-+   ....+.+.....+ .-|...|
T Consensus        73 RikL~y~LG~Is~~~y~Di~~~~kiRn~l~h~~~~~~F~d~~i~~~i~~l~-~v~~~~~~~~~~~~~~d~~~-~~~~~~R  150 (172)
T 3c8g_A           73 ALRLIYALGXXDXWLYADITHFSQYWHYLNEQDETPGFADDITWDFISNVN-SITRNATLYDALXAXXFADF-AVWSEAR  150 (172)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHTCCCCCTTSHHHHHHHHTCH-HHHTSHHHHHHHHHHHTC----CCCHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCHHCCCHHH-HHHHHHH
T ss_conf             999999718998889998999999999861577777768878999988644-42312667655011058489-9999998


Q ss_pred             CCCHHHHHHHHHHHHHHHCC
Q ss_conf             35348999999999986435
Q gi|254780345|r  100 LDMILCSILRAGVLELIECH  119 (170)
Q Consensus       100 l~~~~~~iLr~a~~El~~~~  119 (170)
                      ...+.|+.|-+++.|++...
T Consensus       151 ~~q~ikS~l~Lait~i~~~l  170 (172)
T 3c8g_A          151 FSGXVKTALTLAVTTTLKEL  170 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHC
T ss_conf             52158999999999999640


No 10 
>>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.50A {Enterococcus faecalis V583} (A:)
Probab=53.90  E-value=14  Score=16.59  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             1033988999999833877231499999999952
Q gi|254780345|r  123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK  156 (170)
Q Consensus       123 ~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~  156 (170)
                      +.-+|-+|++.|.. .+..+.++|+|||.+=.++
T Consensus        41 ~~eiI~~A~~~av~-~~~~~~~Yi~~IL~~W~~~   73 (83)
T 2i5u_A           41 AEQLIVKAIEIAID-ANARNYNYINAILKDWEQR   73 (83)
T ss_dssp             HHHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC
T ss_conf             99999999999999-5999769999999999994


No 11 
>>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159} (A:)
Probab=39.71  E-value=23  Score=15.25  Aligned_cols=52  Identities=13%  Similarity=0.005  Sum_probs=34.5

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             3534899999999998643557810339889999998338772314999999999523
Q gi|254780345|r  100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE  157 (170)
Q Consensus       100 l~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~  157 (170)
                      +++.+...|.--+-+    ... +.-+|-++++.|.. .+....++|+|||.+=.++.
T Consensus        18 ls~~e~~~l~~~~~~----~~~-~~e~i~~A~~~a~~-~~~~~~~Yi~~IL~~W~~~g   69 (78)
T 2zc2_A           18 LSPFELEDLQKTVSD----DKT-DPDLVRSALREAVF-NGKTNWNYIQAILRNWRHEG   69 (78)
T ss_dssp             CCHHHHHHHHHHHTT----TCC-CHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHH----HCC-CHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHCC
T ss_conf             999999999999988----299-99999999999999-59998999999999999949


No 12 
>>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (E:)
Probab=33.73  E-value=29  Score=14.67  Aligned_cols=52  Identities=23%  Similarity=0.241  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf             4899999999998643557810339889999998338-772314999999999
Q gi|254780345|r  103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVS  154 (170)
Q Consensus       103 ~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~-~~~~~fVNaVL~ki~  154 (170)
                      +|..-+|-|+-.+.-..-+|.+.||..++.-++...+ .-+.+|.-||=+|..
T Consensus        24 iD~we~rr~lN~l~~~DlVP~P~Ii~aaLrAcRRvND~a~AVR~lE~vK~K~~   76 (109)
T 1v54_E           24 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG   76 (109)
T ss_dssp             CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             40999999999974156689909999999999874006999999999999714


No 13 
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=33.64  E-value=29  Score=14.66  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             899999983387723149999999995233320378763
Q gi|254780345|r  129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA  167 (170)
Q Consensus       129 E~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~~~  167 (170)
                      .|.+|||.++-+  .+=||.+|=++.++.+..+.+.--|
T Consensus        31 tA~~lAk~Lg~~--Kk~VNr~LY~L~~~G~v~~~~~~PP   67 (75)
T 1sfu_A           31 TAISLSNRLKIN--KKKINQQLYKLQKEDTVKMVPSNPP   67 (75)
T ss_dssp             CHHHHHHHTTCC--HHHHHHHHHHHHHTTSEEEECCSSC
T ss_pred             HHHHHHHHHCCH--HHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             199999886300--8788899999986896544249993


No 14 
>>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:)
Probab=33.43  E-value=29  Score=14.64  Aligned_cols=47  Identities=13%  Similarity=0.137  Sum_probs=32.7

Q ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999864355781033988999999833877231499999999952333203787
Q gi|254780345|r  112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV  165 (170)
Q Consensus       112 ~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~  165 (170)
                      +|+.++.. .|.     .++.|||..+-. ..+=||.+|=.+.|+.+....+.+
T Consensus        15 I~~~L~~~-g~~-----~Al~iAk~LGl~-~akeVN~~LY~L~k~g~l~~~~tp   61 (72)
T 3eyi_A           15 IYRFLKDN-GPQ-----RALVIAQALGMR-TAKDVNRDLYRMKSRHLLDMDEQS   61 (72)
T ss_dssp             HHHHHHHH-CSE-----EHHHHHHHTTCC-SGGGTHHHHHHHHHTTSEEECTTT
T ss_pred             HHHHHHHC-CCC-----HHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999966-992-----588999985811-177756899999974277766886


No 15 
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=30.90  E-value=32  Score=14.38  Aligned_cols=34  Identities=18%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999833877231499999999952333203787
Q gi|254780345|r  130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV  165 (170)
Q Consensus       130 ~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~  165 (170)
                      +.+|||.++-+  .+=||.+|=++.++.+..+.+.-
T Consensus        34 A~~LAk~lg~~--Kk~vN~~LY~L~k~g~v~~~~~~   67 (77)
T 1qgp_A           34 AHDLSGKLGTP--KKEINRVLYSLAKKGKLQKEAGT   67 (77)
T ss_dssp             HHHHHHHHCCC--HHHHHHHHHHHHHHTSEEEECSS
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHHHCCCEEECCCC
T ss_conf             99999996988--88889999999987895306998


No 16 
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=24.50  E-value=42  Score=13.69  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=26.7

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999983387723149999999995233320378
Q gi|254780345|r  130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC  164 (170)
Q Consensus       130 ~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~  164 (170)
                      +.+|||.++-+  .+=||.+|=++.++.+..+.+.
T Consensus        30 A~~LAk~Lgi~--Kk~vNr~LY~L~k~g~v~~~~~   62 (81)
T 1qbj_A           30 AHDLSGKLGTP--KKEINRVLYSLAKKGKLQKEAG   62 (81)
T ss_dssp             HHHHHHHHTCC--HHHHHHHHHHHHHTTSEEEESS
T ss_pred             HHHHHHHHCCC--HHHHHHHHHHHHHCCCEEECCC
T ss_conf             99999996988--8898999999998788320589


No 17 
>>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} (A:210-306)
Probab=22.53  E-value=46  Score=13.45  Aligned_cols=52  Identities=21%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             34399999999999998999999999741035763323534899999999998643557810339889999998
Q gi|254780345|r   63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD  136 (170)
Q Consensus        63 ~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~  136 (170)
                      +.+..|+.++          ||..+-++    +++  -+++..+-|..-+||...      ++++||+|+|-..
T Consensus        25 pv~~efa~ei----------ida~lvs~----fpl--hp~~~~~~la~ki~~yvs------~iv~ne~v~lkd~   76 (97)
T 1td6_A           25 PVNAEFANEI----------IDAFLVSY----FPL--HPPVPLAQLAAKIYEYVS------QIVLNEAVNLKDE   76 (97)
T ss_dssp             HHHHHHHHHH----------HHHHHHHT----TTS--CCSSCHHHHHHHHHHHHH------HHSSSCCCTTSHH
T ss_pred             CHHHHHHHHH----------HHHHHHHH----CCC--CCCCCHHHHHHHHHHHHH------HHHHHHHHHCCCC
T ss_conf             3788999999----------99999986----778--999899999999999999------9999877750581


No 18 
>>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} (A:1-103)
Probab=22.18  E-value=35  Score=14.13  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=11.3

Q ss_pred             CCCCCCHHHHHHHHHHHHCC
Q ss_conf             57810339889999998338
Q gi|254780345|r  120 SVPVEVIISEYVCIAHDFFY  139 (170)
Q Consensus       120 ~~p~~vvInE~V~lak~f~~  139 (170)
                      ..-+..|++.+++||+.|.+
T Consensus        26 s~~~e~Vl~~aIeLar~fvg   45 (103)
T 3h4c_A           26 AVLPEPVLDRGIELARAFVG   45 (103)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
T ss_conf             26858899899999999974


No 19 
>>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} (A:1-63)
Probab=22.15  E-value=21  Score=15.48  Aligned_cols=33  Identities=12%  Similarity=-0.015  Sum_probs=19.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             988856679981323469999999999999956
Q gi|254780345|r    1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDII   33 (170)
Q Consensus         1 M~~~~~~~~~~~~~~r~~aR~~aiq~Ly~~~~~   33 (170)
                      |+.+.+........+...+|..|+..|-.-+.+
T Consensus         1 M~~~~~~~~~~~~~~~~~~~~~Al~lLarRehS   33 (63)
T 3dfg_A            1 MSEQAPAPKRGRRFKEQTPVQRALGLLVHREHS   33 (63)
T ss_dssp             ----------------CCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
T ss_conf             988789999888831189999999985133168


No 20 
>>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii OT3} (A:120-214)
Probab=21.67  E-value=45  Score=13.52  Aligned_cols=68  Identities=18%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHCCCCCHHHCCCH---HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH------HCCCCCCCHHHHHH
Q ss_conf             999999999741035763323534---899999999998643557810339889999998------33877231499999
Q gi|254780345|r   80 KQHIDLLISSCLTEKWSFSRLDMI---LCSILRAGVLELIECHSVPVEVIISEYVCIAHD------FFYGDEPKFINAVL  150 (170)
Q Consensus        80 ~~~id~~I~~~l~~~w~~~rl~~~---~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~------f~~~~~~~fVNaVL  150 (170)
                      ..+|+..|...|.++|.  ++.+.   ...-+--+++|++.+..++ ...|.+++.-...      ...+...+|+..++
T Consensus        16 ~~Ei~~Wi~~il~~~W~--ki~Rk~~~~~~~~~~~L~~~lsG~gi~-~~~V~~al~~~~l~~~l~~W~~ed~~~l~~~~~   92 (95)
T 1wxq_A           16 EREIDYWIYGILSKGWD--KFAKRIKLQKIKLESAIAEHLSGIGVN-ENDVWEAXHKLNLPEDPTKWSQDDLLAFASEIR   92 (95)
T ss_dssp             HHHHHHHHHHHHHTTTH--HHHSTTTSSCCCHHHHHHHHTGGGTCC-HHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             98888877664003578--899888621114788899999887653-678999997531012221022778888888865


No 21 
>>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} (A:71-174)
Probab=20.82  E-value=50  Score=13.24  Aligned_cols=52  Identities=15%  Similarity=-0.019  Sum_probs=32.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHHCCCCCCCHHHHHHH
Q ss_conf             353489999999999864355781033988999-9998338772314999999
Q gi|254780345|r  100 LDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLD  151 (170)
Q Consensus       100 l~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~-lak~f~~~~~~~fVNaVL~  151 (170)
                      .++++-..=-+-+.-..|.++.-.+..-+|.+. |-+.+...+..+|+++|-+
T Consensus        43 ~~P~~eI~kvie~v~~~Ylpe~~~~~f~~~i~r~L~rA~~~~d~~~F~~~v~~   95 (104)
T 1u2z_A           43 YNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINL   95 (104)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             68399999999999997397402477378651103664056987998079750


Done!