HHsearch results for GI: 254780345 and protein with PDBid: 1tzv_A
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=100.00 E-value=1.3e-32 Score=214.85 Aligned_cols=138 Identities=32% Similarity=0.433 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13234699999999999999569998999999998531001322112014434399999999999998999999999741
Q gi|254780345|r 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91 (170)
Q Consensus 12 ~~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l 91 (170)
|..+|+.+|+.|+|+||++++++.+..+.+..+.. .......|..|++.++.|+.++...+|.+|.+++
T Consensus 1 m~~pR~~aR~~avq~Ly~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~~l 69 (142)
T 1tzv_A 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL-----------DETYDKKAKEDARRYIRGIKENLSMIDDLISRYL 69 (142)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHC-----------CTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-----------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99736999999999999998728985999999998-----------6557767799999999999985999999999864
Q ss_pred CCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 92 ~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
++|+++++++++++|||+|+||+++.+++|++|||||||+|||.|++++++||||||||+++|+.+..+
T Consensus 70 -~~~~~~~l~~~~~~ILr~a~~El~~~~~~p~~vvInE~v~lak~~~~~~~~~fiNavL~~i~r~~~~~~ 138 (142)
T 1tzv_A 70 -EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138 (142)
T ss_dssp -SSSCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf -248888885899999999999998653576038999999999986898643208999999998729301