HHsearch results for GI: 254780345 and protein with PDBid: 2jr0_A
>2jr0_A Protein NUSB, N utilization substance protein B homolog; antiterminator, transcription; NMR {Aquifex aeolicus}
Probab=100.00 E-value=1.7e-33 Score=220.16 Aligned_cols=138 Identities=24% Similarity=0.311 Sum_probs=124.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 32346999999999999995699989999999985310013221120144343999999999999989999999997410
Q gi|254780345|r 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92 (170)
Q Consensus 13 ~~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~ 92 (170)
++.|+.||..|+|+||++++++.+..+++.+|.+.. ......+..|++.|+.|+.++...+|.+|..++
T Consensus 1 m~~R~~aR~~a~q~Ly~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~lv~g~~~~~~~id~~i~~~l- 69 (148)
T 2jr0_A 1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEK----------NIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKHL- 69 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHT----------TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTT-
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 963899999999999999800959999999999871----------657667999999999999984999999999875-
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 93 ~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
++|+++|+++++++|||+|+||+++++++|++|||||||+|||.|++++++||||||||+++|+.....
T Consensus 70 ~~~~~~rl~~~~~~ILr~ai~El~~~~~~p~~~vInE~v~lak~~~~~~s~~FVNaVL~~i~r~~~~~~ 138 (148)
T 2jr0_A 70 KGWSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSS 138 (148)
T ss_dssp TTCCTTSSCHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 328688876899999999999998678899622899999999986899743229999999998624213