Query gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs 111 out of 2231
Neff 7.9
Searched_HMMs 13730
Date Wed Jun 1 02:57:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780345.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tzva_ a.79.1.1 (A:) Antiterm 100.0 2.5E-33 1.8E-37 217.8 13.4 137 12-161 1-138 (141)
2 d1ey1a_ a.79.1.1 (A:) Antiterm 100.0 1.3E-33 9.6E-38 219.5 11.1 135 14-161 4-138 (139)
3 d1eyva_ a.79.1.1 (A:) Antiterm 100.0 6.8E-32 5E-36 209.1 13.9 129 16-153 2-130 (131)
4 d1sqga1 a.79.1.3 (A:5-144) Rib 99.9 2.6E-26 1.9E-30 175.4 14.4 126 18-159 2-127 (140)
5 d1q8ca_ a.79.1.2 (A:) Hypothet 96.7 0.0052 3.8E-07 34.9 8.1 127 15-153 2-139 (140)
6 d1v54e_ a.118.11.1 (E:) Cytoch 40.2 9.2 0.00067 15.3 3.8 52 103-154 20-72 (105)
7 d1sfua_ a.4.5.19 (A:) 34L {Yab 33.7 12 0.00085 14.7 2.8 36 130-167 27-62 (70)
8 d1xmka1 a.4.5.19 (A:294-366) Z 30.0 14 0.00098 14.3 4.2 52 108-166 6-57 (73)
9 d2i5ua1 a.275.1.1 (A:2-75) Unc 23.2 18 0.0013 13.5 3.5 58 98-156 11-70 (74)
10 d1r31a1 d.58.20.1 (A:111-220) 16.6 25 0.0018 12.7 1.6 27 139-165 73-99 (110)
No 1
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=2.5e-33 Score=217.80 Aligned_cols=137 Identities=31% Similarity=0.456 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1323469999999999999956999-899999999853100132211201443439999999999999899999999974
Q gi|254780345|r 12 LSHRRGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90 (170)
Q Consensus 12 ~~~~r~~aR~~aiq~Ly~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~ 90 (170)
|..+|+.||+.|+|+||++++++.. .+.+...+. .......|+.|+++++.|+.++...+|.+|.++
T Consensus 1 Mk~pR~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~------------~~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~~ 68 (141)
T d1tzva_ 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKEDARRYIRGIKENLSMIDDLISRY 68 (141)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHC------------CTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99816999999999999998449962999999998------------841366679999999999998099999999985
Q ss_pred HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
+ ++|+++|+++++++|||+|+||+++++++|++|+|||||+|||.|++++++||||||||+++|+.+..+
T Consensus 69 ~-~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~i~r~~~~~e 138 (141)
T d1tzva_ 69 L-EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138 (141)
T ss_dssp C-SSSCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 2-158738888899999999999998533330358999999999985888632118999999998757511
No 2
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.3e-33 Score=219.45 Aligned_cols=135 Identities=28% Similarity=0.366 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23469999999999999956999899999999853100132211201443439999999999999899999999974103
Q gi|254780345|r 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93 (170)
Q Consensus 14 ~~r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~ 93 (170)
.+|+.||+.|+|+||++++++.++++++.+|... ..+...|+.|+++++.|+.++...+|.+|.+++
T Consensus 4 ~~R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~-----------~~~~~~d~~~~~~l~~gv~~~~~~id~~I~~~l-- 70 (139)
T d1ey1a_ 4 AARRRARECAVQALYSWQLSQNDIADVEYQFLAE-----------QDVKDVDVLYFRELLAGVATNTAYLDGLMKPYL-- 70 (139)
T ss_dssp TCCCSHHHHHHHHHHHHHHHCCCSHHHHHHHHHT-----------TTSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 4789999999999999983699999999999883-----------454314589999999999983788999999988--
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161 (170)
Q Consensus 94 ~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~ 161 (170)
+|+++|+++++++|||+|+||+++.+++|++|+|||||+|||.|++++++||||||||+++|+.+.++
T Consensus 71 ~~~~~r~~~~~~~ILr~a~~El~~~~~~p~~viInE~Velak~~~~~~~~~fVNgVL~~i~k~~r~~e 138 (139)
T d1ey1a_ 71 SRLLEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 138 (139)
T ss_dssp CSCTTTSCHHHHHHHHHHHHHHHSCSSCCSHHHHHHHHHHTTTTTCSSSSHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 86487537678999999999999713777612599999999996898743117999999999847357
No 3
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.97 E-value=6.8e-32 Score=209.11 Aligned_cols=129 Identities=30% Similarity=0.468 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 46999999999999995699989999999985310013221120144343999999999999989999999997410357
Q gi|254780345|r 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95 (170)
Q Consensus 16 r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w 95 (170)
|+.||+.|+|+||++++++.+++++++++..... .......|..|+++++.|+.++...+|.+|.+++ ++|
T Consensus 2 R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~gv~~~~~~id~~I~~~l-~~~ 72 (131)
T d1eyva_ 2 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAE--------AKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGW 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--------HCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 3799999999999998529499999999999876--------4000378999999999999995999999999860-124
Q ss_pred CHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 6332353489999999999864355781033988999999833877231499999999
Q gi|254780345|r 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 (170)
Q Consensus 96 ~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki 153 (170)
+++++++++++|||+|+||+++++++|.+++|||||+|||.|++++++||||||||++
T Consensus 73 ~~~~l~~i~~~iLr~a~~El~~~~~~p~~viInE~V~lak~~~~~~~~kfiNaVL~ki 130 (131)
T d1eyva_ 73 TLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQV 130 (131)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf 7877539999999999999986456995157899999999968986432369987742
No 4
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=2.6e-26 Score=175.44 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999999999569998999999998531001322112014434399999999999998999999999741035763
Q gi|254780345|r 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97 (170)
Q Consensus 18 ~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~ 97 (170)
.+|..|+|+||++...|.++++++..+.+ .+++.|+.|+++|++|++++...+|.+|++++.++ +
T Consensus 2 ~~R~~A~q~L~~v~~~g~~l~~~l~~~~~-------------~l~~~dr~~~~~lv~gvlr~~~~ld~~i~~~l~~~--~ 66 (140)
T d1sqga1 2 NLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLSQLDWLINKLMARP--M 66 (140)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--C
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C
T ss_conf 79999999999999819989999999998-------------59888899999999999986999999999872301--1
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 32353489999999999864355781033988999999833877231499999999952333
Q gi|254780345|r 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159 (170)
Q Consensus 98 ~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~ 159 (170)
+++++++++|||+|+||+++. ++|++++|||||++||.|++++++||||||||++.|+.+.
T Consensus 67 ~~~~~~~~~iLr~a~~el~~~-~~p~~avvneaV~lak~~~~~~~~~fVNaVLr~~~r~~~~ 127 (140)
T d1sqga1 67 TGKQRTVHYLIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEE 127 (140)
T ss_dssp CGGGHHHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 010099999999999999707-9998001699999999858876442059998999867087
No 5
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=96.65 E-value=0.0052 Score=34.89 Aligned_cols=127 Identities=21% Similarity=0.313 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 346999999999999995-699989999999985310013221120144343999999999999989999999997410-
Q gi|254780345|r 15 RRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT- 92 (170)
Q Consensus 15 ~r~~aR~~aiq~Ly~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~- 92 (170)
.|+..|.+++..+|...| -....+.+-..|.++.- .+..+ -.|-+.+|....++.-.....|...--
T Consensus 2 trtqrriaivefif~~lfflpk~a~~iqa~fl~yd~-------~er~l----n~wqk~ivk~fse~~~~f~~~ie~qq~~ 70 (140)
T d1q8ca_ 2 TRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEYDT-------KERQL----NEWQKLIVKAFSENIFSFQKKIEEQQLK 70 (140)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHTCC-------TTTCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-------CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 622344778999999999674509999999983478-------64554----5899999999999999999999999988
Q ss_pred ---------CCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf ---------3576332353489999999999864355781033988999999833877231499999999
Q gi|254780345|r 93 ---------EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153 (170)
Q Consensus 93 ---------~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki 153 (170)
.+.+-++++..-.++..+|+.|.. ...+..+..|+|++-+-..|+...+.+-..|.||++
T Consensus 71 nq~eiq~kynkisgkkidllt~avilcalseq~-a~~tdkplliseallimdhysq~~ekkqthalldkl 139 (140)
T d1q8ca_ 71 NQLEIQTKYNKISGKKIDLLTTAVVLCALSEQK-AHNTDKPLLISEALLIMDHYSQGAEKKQTHALLDKL 139 (140)
T ss_dssp CCCSCCCC--------CCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHTTCCCTTSCSCTTTSCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 889999886305551115899999999703877-626798634788999998773142577789999842
No 6
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=40.25 E-value=9.2 Score=15.30 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf 4899999999998643557810339889999998338-772314999999999
Q gi|254780345|r 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVS 154 (170)
Q Consensus 103 ~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~-~~~~~fVNaVL~ki~ 154 (170)
+|..-+|-|+-.+.-..-+|.+.||..++.-++...+ .-+.+|.-||=+|..
T Consensus 20 iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~ 72 (105)
T d1v54e_ 20 IDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG 72 (105)
T ss_dssp CCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 40899999999985156689909999999999884007999999999998734
No 7
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=33.70 E-value=12 Score=14.67 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999983387723149999999995233320378763
Q gi|254780345|r 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167 (170)
Q Consensus 130 ~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~~~ 167 (170)
|.+|||.++-. .+=||-+|=++.++....+.+.--|
T Consensus 27 A~~LAk~Lg~~--Kk~VNr~LY~L~~~G~v~~~~~tPP 62 (70)
T d1sfua_ 27 AISLSNRLKIN--KKKINQQLYKLQKEDTVKMVPSNPP 62 (70)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHHHTTSEEEECCSSC
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHCCCEECCCCCCC
T ss_conf 99999995988--9898899999998798512799699
No 8
>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.00 E-value=14 Score=14.29 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998643557810339889999998338772314999999999523332037876
Q gi|254780345|r 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166 (170)
Q Consensus 108 Lr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~~~~~~ 166 (170)
+---+|+.++.. ++ ..++.|||.++-++ .+=||.+|=.+.|..+..+.+.--
T Consensus 6 ~eekI~~~L~~~--g~----~~Al~iak~lGl~k-akeVN~~LY~L~k~g~v~k~~~tP 57 (73)
T d1xmka1 6 IKEKICDYLFNV--SD----SSALNLAKNIGLTK-ARDINAVLIDMERQGDVYRQGTTP 57 (73)
T ss_dssp HHHHHHHHHHHT--CC----EEHHHHHHHHCGGG-HHHHHHHHHHHHHTTSEEEECSSS
T ss_pred HHHHHHHHHHHC--CC----CHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 999999999975--98----43999999949970-788759999999877801279989
No 9
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=23.20 E-value=18 Score=13.54 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHCCCHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 32353489999999999864--355781033988999999833877231499999999952
Q gi|254780345|r 98 SRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156 (170)
Q Consensus 98 ~rl~~~~~~iLr~a~~El~~--~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~ 156 (170)
-.+++.+.--|..=+=...- ..+--+.-+|-+|+..|-. .+....++|++||++=.++
T Consensus 11 G~lsp~~~e~i~~wlddf~~~~~~~~~~~elv~~Al~~Av~-~n~~n~~Yi~~IL~~W~~~ 70 (74)
T d2i5ua1 11 GLMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAID-ANARNYNYINAILKDWEQR 70 (74)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH-HTCCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHC
T ss_conf 77589999999999998631133222769999999999999-4985479999999999984
No 10
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=16.63 E-value=25 Score=12.66 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 877231499999999952333203787
Q gi|254780345|r 139 YGDEPKFINAVLDKVSRKEEIKRSGCV 165 (170)
Q Consensus 139 ~~~~~~fVNaVL~ki~k~~~~~~~~~~ 165 (170)
+.=.+.|||.+|..+++..+....+.+
T Consensus 73 DAMGAN~iNt~lE~ia~~le~~~~~~v 99 (110)
T d1r31a1 73 DAMGANTVNTMAEAVAPLMEAITGGQV 99 (110)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 754137899999999999999849959
Done!