BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780345|ref|YP_003064758.1| transcription antitermination
protein NusB [Candidatus Liberibacter asiaticus str. psy62]
(170 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780345|ref|YP_003064758.1| transcription antitermination protein NusB [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040022|gb|ACT56818.1| transcription antitermination protein NusB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 170
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV
Sbjct: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS
Sbjct: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ
Sbjct: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
>gi|90419413|ref|ZP_01227323.1| putative transcription termination protein NusB [Aurantimonas
manganoxydans SI85-9A1]
gi|90336350|gb|EAS50091.1| putative transcription termination protein NusB [Aurantimonas
manganoxydans SI85-9A1]
Length = 177
Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 4/165 (2%)
Query: 1 MTIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ D + + +K +++RG ARLAAVQALYQ+++ G + E ++EYE +R ++ +
Sbjct: 1 MSSSDPQARPVKQANKRGAARLAAVQALYQMEVGGTALLETVAEYENFRLGSEIDG---E 57
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
Y D WFR ++ GV+ + ID I + L W SR+D L +ILRAG EL
Sbjct: 58 TYREADAGWFRDVVSGVVRSQTEIDPKIHASLPTDWPLSRIDTTLRAILRAGTYELSNRK 117
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VPV VI+SEY+ +A F+ GDEP +NAVLD+V+R ++ G
Sbjct: 118 DVPVAVIVSEYIDVAKAFYTGDEPGLVNAVLDRVARSVRAEKPGE 162
>gi|315122231|ref|YP_004062720.1| transcription antitermination protein NusB [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495633|gb|ADR52232.1| transcription antitermination protein NusB [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 170
Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats.
Identities = 121/170 (71%), Positives = 143/170 (84%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MTIQDNK +KL+ RRGIAR++AVQALYQIDI+GCS ++ISEYE +RFCAD ++D +++
Sbjct: 1 MTIQDNKTTVKLALRRGIARISAVQALYQIDIVGCSLVDVISEYEMHRFCADKDIDEDNI 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y VDLEWF I+HGV+ K+ +D LISSCLTEKWSFSRLD+ILC+ILRAGV ELIECHS
Sbjct: 61 YSQVDLEWFHTIMHGVVKNKELVDSLISSCLTEKWSFSRLDLILCAILRAGVFELIECHS 120
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
VPV VIISEYVCIAHDF YGDEPKF+NAVLDKVSR E++ SAI Q
Sbjct: 121 VPVRVIISEYVCIAHDFLYGDEPKFVNAVLDKVSRTPEVQSKRSDSAIIQ 170
>gi|222148209|ref|YP_002549166.1| transcription antitermination protein NusB [Agrobacterium vitis S4]
gi|254772608|sp|B9JV80|NUSB_AGRVS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|221735197|gb|ACM36160.1| transcription antitermination factor NusB [Agrobacterium vitis S4]
Length = 160
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++NK +K +++RG ARLAAVQALYQ+DI G E+++EYET+R + +
Sbjct: 1 MTTENNKPPVKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYETHRLGQEIDG---ET 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + ID LI L + WS +R+D + +ILRAG EL+E
Sbjct: 58 YLKADASWFRSIVAGVVRDQTKIDPLIRQALQDDWSLARVDSTVRAILRAGTFELLERKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP+ VI++EYV IAH FF DEPK +NAVLD+++++ +
Sbjct: 118 VPIAVIVTEYVEIAHAFFQEDEPKLVNAVLDRIAKQVRV 156
>gi|222085516|ref|YP_002544046.1| transcription antitermination factor NusB [Agrobacterium
radiobacter K84]
gi|254772607|sp|B9JCY3|NUSB_AGRRK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|221722964|gb|ACM26120.1| transcription antitermination factor NusB [Agrobacterium
radiobacter K84]
Length = 160
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ QDN++ K +++RG ARLAAVQALYQ+DI G E+++EYE +R + +
Sbjct: 1 MSNQDNERPAKTANQRGAARLAAVQALYQMDIGGTGVLEVVAEYEAHRLGQELDG---DT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI S L + W+ SRLD + +ILRAG E+++
Sbjct: 58 YLKADASWFRSIVSGVVREQTRLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IAH FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAHAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|227821538|ref|YP_002825508.1| transcription antitermination protein NusB [Sinorhizobium fredii
NGR234]
gi|254772651|sp|C3M9I9|NUSB_RHISN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|227340537|gb|ACP24755.1| N utilization substance protein B [Sinorhizobium fredii NGR234]
Length = 160
Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 3/161 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + LK +++RG ARLAAVQALYQ++I G EI++E+E +R + +
Sbjct: 1 MTNTPSDQPLKQANQRGAARLAAVQALYQMEIGGTGVLEIVAEFEAHRLGQELDG---ET 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG EL+E
Sbjct: 58 YLKADASWFRSIVSGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFELLERKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VPV VI++EYV IA FF +EPK +NAVLD+++++ +R
Sbjct: 118 VPVAVIVTEYVEIAKAFFEDEEPKLVNAVLDRIAKQIRGER 158
>gi|209548794|ref|YP_002280711.1| transcription antitermination protein NusB [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|238055477|sp|B5ZXV2|NUSB_RHILW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|209534550|gb|ACI54485.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 160
Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ +
Sbjct: 58 YLKADAGWFRSIVSGVVRDQTRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|150396046|ref|YP_001326513.1| transcription antitermination protein NusB [Sinorhizobium medicae
WSM419]
gi|166215721|sp|A6U7P8|NUSB_SINMW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|150027561|gb|ABR59678.1| NusB antitermination factor [Sinorhizobium medicae WSM419]
Length = 160
Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R + +
Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDG---DT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E
Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF +EPK +NAVLD+++++ +
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQVRGE 157
>gi|15964969|ref|NP_385322.1| transcription antitermination protein NusB [Sinorhizobium meliloti
1021]
gi|307301040|ref|ZP_07580809.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
gi|307317774|ref|ZP_07597212.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
gi|22095960|sp|Q92QT9|NUSB_RHIME RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|15074148|emb|CAC45795.1| Putative N utilization substance protein B [Sinorhizobium meliloti
1021]
gi|306896536|gb|EFN27284.1| NusB antitermination factor [Sinorhizobium meliloti AK83]
gi|306903995|gb|EFN34581.1| NusB antitermination factor [Sinorhizobium meliloti BL225C]
Length = 160
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + LK ++RG ARLAAVQALYQ+D+ G EI++EYE +R + +
Sbjct: 1 MTNTPSDQPLKQVNQRGAARLAAVQALYQMDVGGTGVLEIVAEYEEHRLGKELDG---DT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ ++ +D LI S L + W+ SRLD + +ILRAG E++E
Sbjct: 58 YLRADASWFRSIVAGVVRDQRKLDPLIGSALQDDWALSRLDSTVRAILRAGTFEILERKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VPV VI++EYV IA FF +EPK +NAVLD+++++
Sbjct: 118 VPVPVIVTEYVEIAKAFFQDEEPKLVNAVLDRIAKQVR 155
>gi|116251399|ref|YP_767237.1| transcription antitermination protein NusB [Rhizobium leguminosarum
bv. viciae 3841]
gi|119390806|sp|Q1MIT2|NUSB_RHIL3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|115256047|emb|CAK07128.1| putative N utilization substance protein B [Rhizobium leguminosarum
bv. viciae 3841]
Length = 160
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 103/160 (64%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + +
Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---ET 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ +
Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|86357164|ref|YP_469056.1| transcription antitermination protein NusB [Rhizobium etli CFN 42]
gi|119390805|sp|Q2KA07|NUSB_RHIEC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|86281266|gb|ABC90329.1| transcription antitermination protein B [Rhizobium etli CFN 42]
Length = 160
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI+ L + W+ SRLD + +ILRAGV EL++
Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAVALQDDWALSRLDSTVRAILRAGVFELLDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIARAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|241204015|ref|YP_002975111.1| transcription antitermination protein NusB [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857905|gb|ACS55572.1| NusB antitermination factor [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 160
Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D+ WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ +
Sbjct: 58 YLKADVAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|327191850|gb|EGE58847.1| transcription antitermination protein B [Rhizobium etli CNPAF512]
Length = 160
Score = 136 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++
Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRGE 157
>gi|190891211|ref|YP_001977753.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
gi|218514737|ref|ZP_03511577.1| transcription antitermination protein NusB [Rhizobium etli 8C-3]
gi|238692516|sp|B3PVD4|NUSB_RHIE6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|190696490|gb|ACE90575.1| transcription antitermination protein B [Rhizobium etli CIAT 652]
Length = 160
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MSDEKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQEIDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV EL++
Sbjct: 58 YLKADAGWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFELLDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFDDDEPKLVNAVLDRIAKQVRSE 157
>gi|218682018|ref|ZP_03529619.1| transcription antitermination protein NusB [Rhizobium etli CIAT
894]
Length = 160
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ +K +++RG ARLAAVQALYQ+D+ G EI++EYE +R + + +
Sbjct: 1 MNDDKTERPVKTANQRGAARLAAVQALYQMDVGGTGVLEIVAEYEAHRLGQELDG---AT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D WFR I+ GV+ + +D LI++ L + W+ SRLD + +ILRAGV E+ +
Sbjct: 58 YLKADAAWFRSIVSGVVRDQVRLDPLIAAALQDDWALSRLDSTVRAILRAGVFEITDRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VPV VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 118 VPVAVIVTEYVEIAQAFFEDDEPKLVNAVLDRIAKQVRGE 157
>gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica
DFL-43]
gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica
DFL-43]
Length = 164
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 4/163 (2%)
Query: 1 MTIQDNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT + N + +K +++RG ARLAAVQALYQ+DI G E+++EYE +R + +
Sbjct: 1 MTTEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLGHEIDG---E 57
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
Y D WF+ ++ GV++ ++ +D +I S LTE W SRLD L +ILRAG EL
Sbjct: 58 QYRPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKK 117
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
VPV VI++EYV +A FF DEPK +NAVLD+++RK +++
Sbjct: 118 DVPVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQT 160
>gi|304391939|ref|ZP_07373881.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
gi|303296168|gb|EFL90526.1| transcription antitermination factor NusB [Ahrensia sp. R2A130]
Length = 186
Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ ++ +K +++RG ARL+AVQALYQ+DI G TE+++EYE +R + + YL
Sbjct: 1 MATKERAMKPANKRGSARLSAVQALYQMDIGGAGLTEVVAEYENFRLGHEIDG---ETYL 57
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D WFR I+ GV+ ++ ID +I LT+ W SR+D L ++LRA V ELI V
Sbjct: 58 DADPSWFRGIVGGVVRDQKKIDPVIHDALTKDWPLSRIDSTLRAVLRAAVFELINRPDVS 117
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V++SEY+ + FF DEPK +N VLDKV+R+
Sbjct: 118 ARVVVSEYIEVTKAFFESDEPKMVNGVLDKVARQLRDGE 156
>gi|328543540|ref|YP_004303649.1| transcription antitermination protein NusB [polymorphum gilvum
SL003B-26A1]
gi|326413284|gb|ADZ70347.1| transcription antitermination protein NusB [Polymorphum gilvum
SL003B-26A1]
Length = 171
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/173 (34%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 1 MTIQ---DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
MT + + +D + +++RG ARL AVQALYQ+DI G S T++++E+ +R + +
Sbjct: 1 MTDKVAHEGGRDARPANKRGAARLGAVQALYQMDIGGASLTDVVNEFTAFRLGKELDG-- 58
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ Y D WF+ ++ GV++ ++ +D I + L E W R+D +L +ILRAG EL+
Sbjct: 59 -AQYREADELWFKDVVKGVVEEQRKLDPFIHTALVEDWPLRRIDSLLRAILRAGAYELLR 117
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
VP VIISEY+ +A F+ DEP+ +N VLD+++ + +
Sbjct: 118 RRDVPARVIISEYIDVAKAFYAEDEPRLVNGVLDRLAHELRTGEFAAKDGTGE 170
>gi|118587988|ref|ZP_01545398.1| transcription antitermination protein NusB [Stappia aggregata IAM
12614]
gi|118439610|gb|EAV46241.1| transcription antitermination protein NusB [Stappia aggregata IAM
12614]
Length = 173
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K ++ +++RG+ARLAAVQALYQ+D+ G T ++SE+ +R + + Y D +
Sbjct: 13 KTVRPANKRGVARLAAVQALYQMDVGGAPLTSVVSEFTAFRLGKEIDG---EQYREADEQ 69
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
WF+ I+ GV++ ++ +D I + L E W R+D +L +ILR+G EL+ VP +VII
Sbjct: 70 WFKQILAGVVEDQKFLDPYIHTALAEDWPLKRIDSLLRAILRSGSYELLRRKDVPAKVII 129
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
SEY+ +A FF DEP +N VLD+++ +
Sbjct: 130 SEYIDVAKAFFEDDEPGLVNGVLDRLAHELRGGE 163
>gi|159184647|ref|NP_354190.2| transcription antitermination protein NusB [Agrobacterium
tumefaciens str. C58]
gi|22095943|sp|Q8UG69|NUSB_AGRT5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|159139945|gb|AAK86975.2| Putative transcription antitermination protein NusB [Agrobacterium
tumefaciens str. C58]
Length = 165
Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + YL
Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDG---DTYLK 65
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV
Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGTFEILERKDVPV 125
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGE 162
>gi|325292546|ref|YP_004278410.1| transcription antitermination protein NusB [Agrobacterium sp.
H13-3]
gi|325060399|gb|ADY64090.1| transcription antitermination protein NusB [Agrobacterium sp.
H13-3]
Length = 165
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ + +K +++RG ARLAAVQALYQ+D+ G E+++EYE +R + + YL
Sbjct: 9 EPRQPSVKPANQRGAARLAAVQALYQMDVGGTGVMEVVAEYEAHRLGQEVDG---DTYLK 65
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D WFR I+ GV+ + ID L+ S L E W SRLD + +ILRAG E++E VPV
Sbjct: 66 ADPSWFRSIVSGVVRDQTKIDPLVRSALLEDWPLSRLDATVRAILRAGAFEILERKDVPV 125
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VI++EYV IA FF DEPK +NAVLD+++++ +
Sbjct: 126 AVIVTEYVEIARAFFEHDEPKLVNAVLDRIAKQVRGE 162
>gi|239831595|ref|ZP_04679924.1| transcription antitermination factor NusB [Ochrobactrum intermedium
LMG 3301]
gi|239823862|gb|EEQ95430.1| transcription antitermination factor NusB [Ochrobactrum intermedium
LMG 3301]
Length = 168
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ + +++++RG+ARLAAVQALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MSSSTGGRPTPNAPRMANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV+D + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQ 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ +EPK +NAVLD+++
Sbjct: 118 TRKDVPTAVIVSEYVDIAKAFYTEEEPKLVNAVLDRLA 155
>gi|170750376|ref|YP_001756636.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
2831]
gi|170656898|gb|ACB25953.1| NusB antitermination factor [Methylobacterium radiotolerans JCM
2831]
Length = 197
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
K+S R ARLA VQALY++DI G + ++E+E + + + + +
Sbjct: 19 PAKIS-PRSGARLAVVQALYEMDISGKGVLDALAEFEAFWIGQEVDGIAHP---PAETAF 74
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR ++ G ++ ++ ID + L + W R++++L +ILRAG EL+ VP IS
Sbjct: 75 FRDLLRGTVEEQRAIDPKLDQALAQGWPLRRIEIVLRAILRAGAYELMFRRDVPAAAAIS 134
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
EYV +AH F+ DEP +NAVLD+V+R+ G A
Sbjct: 135 EYVDVAHSFYTADEPGLVNAVLDRVAREVRPGEVGAPKA 173
>gi|312113512|ref|YP_004011108.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
gi|311218641|gb|ADP70009.1| NusB antitermination factor [Rhodomicrobium vannielii ATCC 17100]
Length = 185
Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
K DL R ARLAAVQALYQ+++ + ++ E+ RF +Y D
Sbjct: 12 KADLPAGQPRTRARLAAVQALYQMEMTQRDLSLVLQEFLGRRFETV------EIYAGADR 65
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+FR I+ G+ + IDL I++ L W SR+D IL +ILR+GV EL + + VP +
Sbjct: 66 SFFRDIVEGIARGQAKIDLEIAAHLASGWKLSRIDSILRAILRSGVYELTDRNDVPARAV 125
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
I+EYV IA DFF G+EP +N VLD+V+R + + G S
Sbjct: 126 INEYVEIAKDFFGGEEPGVVNGVLDRVARAKRSREFGRKSG 166
>gi|114704829|ref|ZP_01437737.1| transcription antitermination protein NusB [Fulvimarina pelagi
HTCC2506]
gi|114539614|gb|EAU42734.1| transcription antitermination protein NusB [Fulvimarina pelagi
HTCC2506]
Length = 163
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ ++ + +++RG+ARLAAVQALYQ+DI G E ++EYET+R + + Y
Sbjct: 2 DETKQRSFRPANKRGVARLAAVQALYQMDIGGTPLVETVAEYETHRMGHEIDG---ETYR 58
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D WFR I+ GV+ R++ ID +I + L W SRLD L +ILRAGV E+ + VP
Sbjct: 59 VADAAWFRDIVSGVVRRQKAIDPIIHANLPPGWPLSRLDSTLRAILRAGVYEIETRNDVP 118
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V VI+SEYV +A FF +EPK +NA+LD+V+R+
Sbjct: 119 VAVIVSEYVDVAKAFFEEEEPKLVNALLDRVAREMR 154
>gi|27380139|ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium
japonicum USDA 110]
gi|32171616|sp|Q89K81|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|27353293|dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA
110]
Length = 165
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 4 QDNKKDL----KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
+NKK K ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E
Sbjct: 3 DNNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEG---D 59
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
YL + +FR ++ GV+ ++ +D LI L++ W R++ IL ++LRAG EL
Sbjct: 60 TYLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRK 119
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VP V++SEYV +A+ F +E +NAVLD++ R+ G
Sbjct: 120 DVPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQFRGDEFGR 164
>gi|23012491|ref|ZP_00052562.1| COG0781: Transcription termination factor [Magnetospirillum
magnetotacticum MS-1]
Length = 169
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 92/170 (54%), Gaps = 3/170 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + ++ R ARLA VQALY+++I + ++E+E + + + V
Sbjct: 1 MNQPADTPAQPKTNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHP- 59
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ +FR ++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+
Sbjct: 60 --PAETAFFRDVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
VP ISEYV +AH F+ GDEP +NAVLD+V R+ G +A ++
Sbjct: 118 VPARAAISEYVDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPSK 167
>gi|254502610|ref|ZP_05114761.1| transcription antitermination factor NusB [Labrenzia alexandrii
DFL-11]
gi|222438681|gb|EEE45360.1| transcription antitermination factor NusB [Labrenzia alexandrii
DFL-11]
Length = 177
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q + + +++RG+ARLAAVQALYQ+DI G T ++SEY +R + + Y
Sbjct: 13 QKSDNSSRPANKRGVARLAAVQALYQMDIGGAPLTNVVSEYTAFRLGKEIDG---EQYRD 69
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D +WF+ I+ GV+ ++ +D I + L E W R+D +L +ILRAG EL+ VP
Sbjct: 70 ADEQWFKHILAGVVADQKFLDPYIHTALKEDWPLKRIDSLLRAILRAGGYELLRRRDVPA 129
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+VIISEY+ +A FF DEP +N VLD+++ + A Q
Sbjct: 130 KVIISEYIDVAKAFFEDDEPGLVNGVLDRLAHELRSPEFDVKDADGQ 176
>gi|307945261|ref|ZP_07660597.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
gi|307771134|gb|EFO30359.1| transcription antitermination factor NusB [Roseibium sp. TrichSKD4]
Length = 173
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 8/166 (4%)
Query: 1 MTIQDNKKDL-----KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ Q K + + +++RG+ARLAAVQALYQ+D+ + +ISE+ +R + +
Sbjct: 1 MSEQAEPKKVATKAVRPANKRGVARLAAVQALYQMDVGEVPLSSVISEFTAFRLGKELDG 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
YL D +WF+ I++GV + ++ +D I LTE W R+D +L +ILR+G EL
Sbjct: 61 ---EQYLDADEQWFKSIVNGVFEDQKFLDPFIHKALTEGWPLKRVDSLLRAILRSGSFEL 117
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ VP +VIISEY+ + F+ DEP +N VLD+++ + +
Sbjct: 118 LRRKDVPPKVIISEYIDVTKAFYEADEPGLVNGVLDRLAHELRNEE 163
>gi|319784157|ref|YP_004143633.1| transcription antitermination factor NusB [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170045|gb|ADV13583.1| transcription antitermination factor NusB [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 166
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 1 MTI--QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ + ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + +
Sbjct: 1 MSEPASPGQPAMRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGAL- 59
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
Y D +WFR I+ GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++
Sbjct: 60 --YREADAQWFRAILAGVVENQKTIDPIIRQALTEDWPLSRLDSTLRAILRAGVYELMKR 117
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VPV VI+SEYV IA F+ DEPK +NAVLD+VSR+ + G
Sbjct: 118 EDVPVAVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGK 163
>gi|153009852|ref|YP_001371067.1| transcription antitermination protein NusB [Ochrobactrum anthropi
ATCC 49188]
gi|166215706|sp|A6X1Y4|NUSB_OCHA4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|151561740|gb|ABS15238.1| NusB antitermination factor [Ochrobactrum anthropi ATCC 49188]
Length = 168
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MNSSTEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVLEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV+D + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVDEQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELQ 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 TRKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|254718887|ref|ZP_05180698.1| transcription antitermination protein NusB [Brucella sp. 83/13]
gi|265983873|ref|ZP_06096608.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306838197|ref|ZP_07471051.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
gi|264662465|gb|EEZ32726.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|306406706|gb|EFM62931.1| transcription antitermination factor NusB [Brucella sp. NF 2653]
Length = 171
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEGWPLSRLDSTLRAILRAGAWELK 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|91977147|ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris BisB5]
gi|119390810|sp|Q136T4|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91683603|gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5]
Length = 174
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
D K + ++RRG ARLAAVQALYQ+DI G + +E+E++ + E YL
Sbjct: 18 DKKPGDRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEG---DQYLPA 74
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
+ +FR I+ GV+ + +D LI L + W +R+D I+ +++RAG EL +P
Sbjct: 75 EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V++SEYV +AH F DE +NAVLD+++R+
Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRADE 171
>gi|306843714|ref|ZP_07476314.1| transcription antitermination factor NusB [Brucella sp. BO1]
gi|306276024|gb|EFM57733.1| transcription antitermination factor NusB [Brucella sp. BO1]
Length = 171
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MNSTPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|319898989|ref|YP_004159082.1| N utilization substance protein B [Bartonella clarridgeiae 73]
gi|319402953|emb|CBI76504.1| N utilization substance protein B [Bartonella clarridgeiae 73]
Length = 156
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +K L+L+++RG ARLAAVQALYQ+DIIG EII+EYE YR + +
Sbjct: 1 MAYIKSKDSLRLANKRGAARLAAVQALYQMDIIGTGVIEIIAEYEAYRLGKNIDG---DQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI
Sbjct: 58 YLDADFQWFCSIIVGVVKDQKQLDPMLHQKLSEEWALSRLDSTLRAILRAGLWELINRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
VPV VII+EYV IA FF DEP+ +NAVLD ++++
Sbjct: 118 VPVAVIINEYVDIAKAFFESDEPRLVNAVLDNIAKEI 154
>gi|260466838|ref|ZP_05813022.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
gi|259029340|gb|EEW30632.1| NusB antitermination factor [Mesorhizobium opportunistum WSM2075]
Length = 166
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
Query: 1 MTI--QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ + ++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + +
Sbjct: 1 MSEPASPGQPAVRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGAL- 59
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
Y D +WFR I+ GV++ ++ ID +I LTE W SRLD L +ILRAGV EL++
Sbjct: 60 --YREADAQWFRAILTGVVEDQKTIDPIIRQSLTEDWPLSRLDSTLRAILRAGVYELMKR 117
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VPV VI+SEYV IA F+ DEPK +NAVLD+VSR+ + G
Sbjct: 118 EDVPVAVIVSEYVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGK 163
>gi|167647006|ref|YP_001684669.1| transcription antitermination protein NusB [Caulobacter sp. K31]
gi|167349436|gb|ABZ72171.1| NusB antitermination factor [Caulobacter sp. K31]
Length = 153
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 72/145 (49%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +ARLA VQALYQ++ G ++ E+ +RF D + D +F +
Sbjct: 8 QPRSVARLAVVQALYQMEQSGVGVDAVVREFAEHRFDRDVDGPDTDRLAAADETFFAELA 67
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ + +D I L W RLD ++LR+G EL+ VP EV+I EYV I
Sbjct: 68 KGVVAHQAAVDQAIVKRLASGWKLERLDATARAVLRSGAYELMHRPDVPTEVVIDEYVEI 127
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A FF G E FIN LD ++R
Sbjct: 128 AKSFFEGPESGFINGALDAIARDSR 152
>gi|254469407|ref|ZP_05082812.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
gi|211961242|gb|EEA96437.1| transcription antitermination factor NusB [Pseudovibrio sp. JE062]
Length = 163
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 58/163 (35%), Positives = 98/163 (60%), Gaps = 5/163 (3%)
Query: 1 MTIQDNKKD--LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++NKK+ ++ +++RG+ARLAAVQA+YQ++I G ++++EYE YR + +
Sbjct: 1 MTTENNKKNAEVRPANKRGVARLAAVQAVYQMEITGARLNDVLNEYEAYRLGQEVDG--- 57
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
Y D WFR ++ V + + ID I + L+E W R+D L +ILR G E +
Sbjct: 58 EQYRDADPAWFRDLVQAVFEDQLRIDPRIHTALSEDWPLKRIDTTLRAILRVGCAEFLRK 117
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP VII+EY+ +A F+ GDE + +N ++++++R+
Sbjct: 118 KDVPARVIINEYIDVAKSFYEGDEARLVNGIMNRLARELRQSE 160
>gi|23501657|ref|NP_697784.1| transcription antitermination protein NusB [Brucella suis 1330]
gi|148560649|ref|YP_001258749.1| transcription antitermination protein NusB [Brucella ovis ATCC
25840]
gi|161618737|ref|YP_001592624.1| transcription antitermination protein NusB [Brucella canis ATCC
23365]
gi|225627268|ref|ZP_03785305.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
gi|254701543|ref|ZP_05163371.1| transcription antitermination protein NusB [Brucella suis bv. 5
str. 513]
gi|254704092|ref|ZP_05165920.1| transcription antitermination protein NusB [Brucella suis bv. 3
str. 686]
gi|254707007|ref|ZP_05168835.1| transcription antitermination protein NusB [Brucella pinnipedialis
M163/99/10]
gi|254709884|ref|ZP_05171695.1| transcription antitermination protein NusB [Brucella pinnipedialis
B2/94]
gi|254713885|ref|ZP_05175696.1| transcription antitermination protein NusB [Brucella ceti
M644/93/1]
gi|254717058|ref|ZP_05178869.1| transcription antitermination protein NusB [Brucella ceti M13/05/1]
gi|256031377|ref|ZP_05444991.1| transcription antitermination protein NusB [Brucella pinnipedialis
M292/94/1]
gi|256060886|ref|ZP_05451046.1| transcription antitermination protein NusB [Brucella neotomae 5K33]
gi|256159498|ref|ZP_05457266.1| transcription antitermination protein NusB [Brucella ceti
M490/95/1]
gi|256254784|ref|ZP_05460320.1| transcription antitermination protein NusB [Brucella ceti B1/94]
gi|256369202|ref|YP_003106710.1| transcription antitermination protein NusB [Brucella microti CCM
4915]
gi|260168510|ref|ZP_05755321.1| transcription antitermination protein NusB [Brucella sp. F5/99]
gi|260566660|ref|ZP_05837130.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
gi|261218868|ref|ZP_05933149.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261221964|ref|ZP_05936245.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261314474|ref|ZP_05953671.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261317426|ref|ZP_05956623.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261321633|ref|ZP_05960830.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261324884|ref|ZP_05964081.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261752093|ref|ZP_05995802.1| transcription antitermination protein NusB [Brucella suis bv. 5
str. 513]
gi|261754752|ref|ZP_05998461.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261757980|ref|ZP_06001689.1| antitermination protein NusB [Brucella sp. F5/99]
gi|265988463|ref|ZP_06101020.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265997927|ref|ZP_06110484.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294852131|ref|ZP_06792804.1| transcription antitermination factor NusB [Brucella sp. NVSL
07-0026]
gi|32171662|sp|Q8G1E7|NUSB_BRUSU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215665|sp|A5VPV2|NUSB_BRUO2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035880|sp|A9MAF0|NUSB_BRUC2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|23347577|gb|AAN29699.1| N utilization substance protein B [Brucella suis 1330]
gi|148371906|gb|ABQ61885.1| transcription antitermination factor NusB [Brucella ovis ATCC
25840]
gi|161335548|gb|ABX61853.1| transcription antitermination factor NusB [Brucella canis ATCC
23365]
gi|225617273|gb|EEH14318.1| transcription antitermination factor NusB [Brucella ceti str. Cudo]
gi|255999362|gb|ACU47761.1| transcription antitermination protein NusB [Brucella microti CCM
4915]
gi|260156178|gb|EEW91258.1| antitermination protein NusB [Brucella suis bv. 4 str. 40]
gi|260920548|gb|EEX87201.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|260923957|gb|EEX90525.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261294323|gb|EEX97819.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261296649|gb|EEY00146.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261300864|gb|EEY04361.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261303500|gb|EEY06997.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261737964|gb|EEY25960.1| antitermination protein NusB [Brucella sp. F5/99]
gi|261741846|gb|EEY29772.1| transcription antitermination protein NusB [Brucella suis bv. 5
str. 513]
gi|261744505|gb|EEY32431.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262552395|gb|EEZ08385.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|264660660|gb|EEZ30921.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|294820720|gb|EFG37719.1| transcription antitermination factor NusB [Brucella sp. NVSL
07-0026]
Length = 171
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAAVQALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MNSIPEGRPTPNLPRTANKRGVARLAAVQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|163852577|ref|YP_001640620.1| transcription antitermination factor NusB [Methylobacterium
extorquens PA1]
gi|218531417|ref|YP_002422233.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240139911|ref|YP_002964388.1| transcription antitermination factor [Methylobacterium extorquens
AM1]
gi|254562335|ref|YP_003069430.1| transcription antitermination factor [Methylobacterium extorquens
DM4]
gi|163664182|gb|ABY31549.1| transcription antitermination factor NusB [Methylobacterium
extorquens PA1]
gi|218523720|gb|ACK84305.1| NusB antitermination factor [Methylobacterium chloromethanicum CM4]
gi|240009885|gb|ACS41111.1| transcription antitermination factor [Methylobacterium extorquens
AM1]
gi|254269613|emb|CAX25584.1| transcription antitermination factor [Methylobacterium extorquens
DM4]
Length = 171
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + R ARLA VQALY+++I E ++E+E + + + V
Sbjct: 1 MTDPAATPAQPKPNARTGARLAVVQALYEMEISDKGVIEALAEFEAFWIGQEVDGVVHP- 59
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
++ +FR ++ G ++ ++ ID + + L + W RL+ +L +ILRAG EL+
Sbjct: 60 --PAEIAFFRDVLRGAVEEQRAIDPKLDTALAKGWPLRRLEAVLRAILRAGAYELMFRRD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
VP IS+YV +A+ F+ GDEP +NAVLD+V R+ G +A
Sbjct: 118 VPARAAISQYVEVAYSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAP 165
>gi|299135081|ref|ZP_07028272.1| NusB antitermination factor [Afipia sp. 1NLS2]
gi|298590058|gb|EFI50262.1| NusB antitermination factor [Afipia sp. 1NLS2]
Length = 166
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 3/153 (1%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D YL + +FR
Sbjct: 16 KANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE---YLPAEAAFFRD 72
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV+ + ID ++ LT W R++ IL + LRAG EL VP V+I EYV
Sbjct: 73 VVSGVVRDQGKIDPMLDEALTRGWPLKRIEAILRATLRAGAYELGHRKDVPARVVIKEYV 132
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+AH F DE +NAVLD+++R+
Sbjct: 133 DVAHAFVEADEAGMVNAVLDQIARQFRTDEFAK 165
>gi|115524819|ref|YP_781730.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris BisA53]
gi|115518766|gb|ABJ06750.1| NusB antitermination factor [Rhodopseudomonas palustris BisA53]
Length = 174
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 15/176 (8%)
Query: 1 MTIQDN--------KKDL----KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR 48
MT KK + + ++RRG ARLAAVQALYQ+++ G +I +E+E++
Sbjct: 1 MTDPKKPDFKKPDVKKAMPKGDRKANRRGAARLAAVQALYQMEVGGAGLNDIFAEFESHW 60
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
+ E YL + +F+ I+ GV+ + +D LI L+ W +R++ IL +++
Sbjct: 61 LGHEVEG---EQYLPAEAAFFQDIVSGVVRDQLQLDPLIDEALSRGWPLARIEAILRAVM 117
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
RAG EL VP V++SEYV +A+ F GDE +NAVLD+++R+
Sbjct: 118 RAGAYELQHRKDVPARVVVSEYVDVANAFVEGDETGMVNAVLDQIARQFRPDEFAK 173
>gi|90424163|ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris BisB18]
gi|119390809|sp|Q214H2|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|90106177|gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18]
Length = 169
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ K K ++RRG ARLAAVQALYQ+D+ G +I +E+E++ + E YL
Sbjct: 10 NKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEG---DQYL 66
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ +F+ ++ GV+ + +D LI L + W +R+D IL +++RAG EL VP
Sbjct: 67 PAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVP 126
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V++SEYV +A+ F G+E +NAVLD+++R+
Sbjct: 127 ARVVVSEYVDVANAFVEGEETGMVNAVLDQIARQFRADE 165
>gi|92117364|ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter
hamburgensis X14]
gi|119390788|sp|Q1QMB4|NUSB_NITHX RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91800258|gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14]
Length = 160
Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K ++RRG ARLAAVQALYQ++I G ++ +E+E++ ++ E YL + +FR
Sbjct: 10 KKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEG---DKYLPAEAAFFR 66
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV+ + +D LI L+ W R+D IL ++LRAG EL VP V++SEY
Sbjct: 67 DVVAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEY 126
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V +AH F +E +NAVLD+++R+
Sbjct: 127 VDVAHAFIEKEEVGMVNAVLDQIARRFRAGEFAR 160
>gi|75675914|ref|YP_318335.1| transcription antitermination protein NusB [Nitrobacter
winogradskyi Nb-255]
gi|119390791|sp|Q3SRV8|NUSB_NITWN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|74420784|gb|ABA04983.1| NusB antitermination factor [Nitrobacter winogradskyi Nb-255]
Length = 161
Score = 126 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ ++RRG ARLAAVQALYQ++I G ++ +E++++ + E YL + +FR
Sbjct: 10 RKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGNEVEG---DRYLPAEAAFFR 66
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV+ + ID LI L++ W R+ IL ++LRAG EL VP V++SEY
Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAILRAVLRAGSYELEHRKDVPARVVVSEY 126
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V +AH F DE +NAVLD+++R+
Sbjct: 127 VDVAHAFVEKDEAGMVNAVLDQIARRFRTGEFAR 160
>gi|13476941|ref|NP_108511.1| transcription antitermination protein NusB [Mesorhizobium loti
MAFF303099]
gi|22095963|sp|Q983A9|NUSB_RHILO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|14027704|dbj|BAB54297.1| N-utilization substance protein B [Mesorhizobium loti MAFF303099]
Length = 155
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 3/155 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++ +++RG ARLAAVQALYQ+D+ G EI +EYE +R + + + Y D +WF
Sbjct: 1 MRHANKRGAARLAAVQALYQMDVAGSGVFEITAEYEAFRLGKEVDGAL---YREADAQWF 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R I+ GV++ ++ ID +I LT+ W SRLD L +ILRAGV EL++ VPV VI+SE
Sbjct: 58 RAILTGVVEDQKTIDPVIRQALTDDWPLSRLDSTLRAILRAGVYELMKREDVPVAVIVSE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
YV IA F+ DEPK +NAVLD+VSR+ + G
Sbjct: 118 YVDIAKAFYEEDEPKLVNAVLDRVSRRVRGEGRGK 152
>gi|319404314|emb|CBI77907.1| N utilization substance protein B [Bartonella rochalimae ATCC
BAA-1498]
Length = 156
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 3/156 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M K L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + +
Sbjct: 1 MDDVKGKDSLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---NQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WFR II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI
Sbjct: 58 YLDADFQWFRSIIVGVVRDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKG 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P+ VI++EY+ IA FF DEP+ +NAVLD ++++
Sbjct: 118 MPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153
>gi|62289722|ref|YP_221515.1| transcription antitermination protein NusB [Brucella abortus bv. 1
str. 9-941]
gi|82699651|ref|YP_414225.1| transcription antitermination protein NusB [Brucella melitensis
biovar Abortus 2308]
gi|189023971|ref|YP_001934739.1| transcription antitermination protein NusB [Brucella abortus S19]
gi|225852286|ref|YP_002732519.1| transcription antitermination protein NusB [Brucella melitensis
ATCC 23457]
gi|237815210|ref|ZP_04594208.1| transcription antitermination factor NusB [Brucella abortus str.
2308 A]
gi|254689031|ref|ZP_05152285.1| transcription antitermination protein NusB [Brucella abortus bv. 6
str. 870]
gi|254693514|ref|ZP_05155342.1| transcription antitermination protein NusB [Brucella abortus bv. 3
str. Tulya]
gi|254697166|ref|ZP_05158994.1| transcription antitermination protein NusB [Brucella abortus bv. 2
str. 86/8/59]
gi|254730062|ref|ZP_05188640.1| transcription antitermination protein NusB [Brucella abortus bv. 4
str. 292]
gi|256113300|ref|ZP_05454168.1| transcription antitermination protein NusB [Brucella melitensis bv.
3 str. Ether]
gi|256257281|ref|ZP_05462817.1| transcription antitermination protein NusB [Brucella abortus bv. 9
str. C68]
gi|256264209|ref|ZP_05466741.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
gi|260545525|ref|ZP_05821266.1| antitermination protein NusB [Brucella abortus NCTC 8038]
gi|260754526|ref|ZP_05866874.1| transcription antitermination protein NusB [Brucella abortus bv. 6
str. 870]
gi|260757747|ref|ZP_05870095.1| transcription antitermination protein NusB [Brucella abortus bv. 4
str. 292]
gi|260761572|ref|ZP_05873915.1| transcription antitermination protein NusB [Brucella abortus bv. 2
str. 86/8/59]
gi|260883554|ref|ZP_05895168.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261213774|ref|ZP_05928055.1| transcription antitermination protein NusB [Brucella abortus bv. 3
str. Tulya]
gi|265994713|ref|ZP_06107270.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|297248127|ref|ZP_06931845.1| transcription antitermination factor NusB [Brucella abortus bv. 5
str. B3196]
gi|75496998|sp|Q57DY0|NUSB_BRUAB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119372280|sp|Q2YNC5|NUSB_BRUA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689358|sp|B2S518|NUSB_BRUA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772617|sp|C0RIA7|NUSB_BRUMB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|62195854|gb|AAX74154.1| NusB, N utilization substance protein B [Brucella abortus bv. 1
str. 9-941]
gi|82615752|emb|CAJ10748.1| Antitermination protein NusB [Brucella melitensis biovar Abortus
2308]
gi|189019543|gb|ACD72265.1| Antitermination protein NusB [Brucella abortus S19]
gi|225640651|gb|ACO00565.1| transcription antitermination factor NusB [Brucella melitensis ATCC
23457]
gi|237790047|gb|EEP64257.1| transcription antitermination factor NusB [Brucella abortus str.
2308 A]
gi|260096932|gb|EEW80807.1| antitermination protein NusB [Brucella abortus NCTC 8038]
gi|260668065|gb|EEX55005.1| transcription antitermination protein NusB [Brucella abortus bv. 4
str. 292]
gi|260672004|gb|EEX58825.1| transcription antitermination protein NusB [Brucella abortus bv. 2
str. 86/8/59]
gi|260674634|gb|EEX61455.1| transcription antitermination protein NusB [Brucella abortus bv. 6
str. 870]
gi|260873082|gb|EEX80151.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260915381|gb|EEX82242.1| transcription antitermination protein NusB [Brucella abortus bv. 3
str. Tulya]
gi|262765826|gb|EEZ11615.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263094453|gb|EEZ18275.1| antitermination protein NusB [Brucella melitensis bv. 2 str. 63/9]
gi|297175296|gb|EFH34643.1| transcription antitermination factor NusB [Brucella abortus bv. 5
str. B3196]
gi|326408790|gb|ADZ65855.1| Antitermination protein NusB [Brucella melitensis M28]
gi|326538508|gb|ADZ86723.1| transcription antitermination factor NusB [Brucella melitensis
M5-90]
Length = 171
Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + +
Sbjct: 1 MNSIPEGRPTPNLPRTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|163868463|ref|YP_001609672.1| transcription antitermination protein NusB [Bartonella tribocorum
CIP 105476]
gi|189035879|sp|A9IVB9|NUSB_BART1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|161018119|emb|CAK01677.1| N utilization substance protein B [Bartonella tribocorum CIP
105476]
Length = 156
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ + +++RG ARLAAVQALYQ+DI+G E +EYE YR D +
Sbjct: 1 MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDG---DQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D L+ L+ +WS SRLD IL +ILRA + ELI
Sbjct: 58 YLDADFQWFLAIITGVVQDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAALWELINRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VPV V+++EYV IA FF GDEPK +NAVLD +++K +
Sbjct: 118 VPVAVVVNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156
>gi|58040838|ref|YP_192802.1| NusB family protein [Gluconobacter oxydans 621H]
gi|81556897|sp|Q5FNA1|NUSB_GLUOX RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|58003252|gb|AAW62146.1| NusB family protein [Gluconobacter oxydans 621H]
Length = 160
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT+ D R IAR+AAVQAL+Q + G + +IS++ +R + T +
Sbjct: 1 MTVTDAPSANPTRRSRTIARVAAVQALFQCEQSGDTAETVISQFIRHRRISSTASFDDGH 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL+ F+ I+ GV R+ ID +S L E+W RLD +L ++LRA V E+
Sbjct: 61 IPDADLKLFQEIVLGVTRRQDDIDAKLSDVLPEQWPLPRLDPVLRALLRAAVFEIG--TD 118
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P +II+EY+ +AH FF GDEPK +N +LD +SR+
Sbjct: 119 TPDRIIINEYLDVAHGFFSGDEPKMVNGILDTLSRRAN 156
>gi|209884998|ref|YP_002288855.1| transcription antitermination factor NusB [Oligotropha
carboxidovorans OM5]
gi|209873194|gb|ACI92990.1| transcription antitermination factor NusB [Oligotropha
carboxidovorans OM5]
Length = 156
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 91/161 (56%), Gaps = 7/161 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + K ++RRG ARLAAVQALYQ+DI G +I +E+E++ + E D
Sbjct: 1 MASKTEGK----ANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDE--- 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL + +FR I+ GV+ + ID ++ L+ W R++ IL + LRAG EL
Sbjct: 54 YLPAEAAFFRDIVSGVVRDQGRIDPMLDEALSRGWPLKRIEAILRATLRAGAYELGHRKD 113
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP V+I EYV +AH FF DE +NAVLD+++R+
Sbjct: 114 VPARVVIKEYVDVAHAFFEADEAGMVNAVLDQIARQTRAGE 154
>gi|192291385|ref|YP_001991990.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris TIE-1]
gi|238692600|sp|B3QJK9|NUSB_RHOPT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|192285134|gb|ACF01515.1| NusB antitermination factor [Rhodopseudomonas palustris TIE-1]
Length = 174
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 7/164 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E
Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEG---EQ 69
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL
Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P V++SEYV +AH F DE +NAVLD+++R+ +
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFRAEEFSK 173
>gi|197105131|ref|YP_002130508.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
gi|196478551|gb|ACG78079.1| N utilization substance protein B [Phenylobacterium zucineum HLK1]
Length = 149
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +ARLAAVQALYQ+++ +I E+ +RF D E D +F ++
Sbjct: 7 SRSVARLAAVQALYQMEVSSTGVEAVIREFSDHRFDRDVEG---ETLASADEAFFADLVR 63
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ++ ID I L + W RLD + +ILRAG EL+ VP EV I EYV +
Sbjct: 64 GVVREQKPIDAAIVKRLAQGWRLERLDATVRAILRAGAFELMHRSDVPTEVAIDEYVELT 123
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
FF G EP F+N LD V+R
Sbjct: 124 KSFFEGPEPGFVNGALDGVARDVR 147
>gi|86749756|ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris HaA2]
gi|119390808|sp|Q2IWR9|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|86572784|gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2]
Length = 169
Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 3/154 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K + ++RRG ARLAAVQALYQ+DI G E +E+E++ + E YL +
Sbjct: 15 KGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEVEG---DQYLPAEAA 71
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+FR ++ GV+ ++ +D LI L + W +R+D IL +++RAG EL +P V++
Sbjct: 72 FFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELEHRKDIPARVVV 131
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
SEYV +AH F DE +NAVLD+++R+
Sbjct: 132 SEYVDVAHAFVEKDETGMVNAVLDQIARQFREDE 165
>gi|49475530|ref|YP_033571.1| transcription antitermination protein NusB [Bartonella henselae
str. Houston-1]
gi|81647946|sp|Q6G3K8|NUSB_BARHE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|49238336|emb|CAF27560.1| N utilization substance protein B [Bartonella henselae str.
Houston-1]
Length = 158
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 74/161 (45%), Positives = 105/161 (65%), Gaps = 3/161 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + K +L+++RG ARLAAVQALYQ+DI+G E +EYE YR D +
Sbjct: 1 MVDVEGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDG---DQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D +++ L+ +WS SRLD IL +ILRAG+ ELI
Sbjct: 58 YLDADFQWFLAIITGVVKDQKQLDPMLNQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP+ V++SEYV IA FF GDEPK +NA+LD +++K + +
Sbjct: 118 VPIAVVMSEYVDIAKAFFEGDEPKLVNAILDSMAKKIRLLK 158
>gi|17987469|ref|NP_540103.1| transcription antitermination protein NusB [Brucella melitensis bv.
1 str. 16M]
gi|256044456|ref|ZP_05447360.1| transcription antitermination protein NusB [Brucella melitensis bv.
1 str. Rev.1]
gi|260563807|ref|ZP_05834293.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
gi|265990877|ref|ZP_06103434.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|22095950|sp|Q8YGH3|NUSB_BRUME RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|17983165|gb|AAL52367.1| n utilization substance protein b [Brucella melitensis bv. 1 str.
16M]
gi|260153823|gb|EEW88915.1| antitermination protein NusB [Brucella melitensis bv. 1 str. 16M]
gi|263001661|gb|EEZ14236.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 171
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ +++RG+ARLAAVQAL+Q+D+ G E+++EYE +R + + + YL D +WFR
Sbjct: 15 RTANKRGVARLAAVQALFQMDVAGTGVMEVVAEYEAFRLGKEVDG---TQYLDADPQWFR 71
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I+ GV++ + +D +I LTE W SRLD L +ILRAG EL VP VI+SEY
Sbjct: 72 AIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELKARKDVPTAVIVSEY 131
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V IA F+ DEPK +NAVLD+++
Sbjct: 132 VDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|163843041|ref|YP_001627445.1| transcription antitermination protein NusB [Brucella suis ATCC
23445]
gi|189035881|sp|B0CL95|NUSB_BRUSI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|163673764|gb|ABY37875.1| transcription antitermination factor NusB [Brucella suis ATCC
23445]
Length = 171
Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
Query: 1 MTIQDNKKD----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + + +++RG+ARLAA QALYQ+D+ G E+++EYE +R + +
Sbjct: 1 MNSIPEGRPTPNLPRTANKRGVARLAAAQALYQMDVAGTGVMEVVAEYEAFRLGKEVDG- 59
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ YL D +WFR I+ GV++ + +D +I LTE W SRLD L +ILRAG EL
Sbjct: 60 --TQYLDADPQWFRAIVAGVVEDQLKLDPMIHQALTEDWPLSRLDSTLRAILRAGAWELK 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP VI+SEYV IA F+ DEPK +NAVLD+++
Sbjct: 118 ARKDVPTAVIVSEYVDIAKAFYTEDEPKLVNAVLDRLA 155
>gi|148255993|ref|YP_001240578.1| transcription antitermination protein NusB [Bradyrhizobium sp.
BTAi1]
gi|166918804|sp|A5EKH8|NUSB_BRASB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|146408166|gb|ABQ36672.1| NusB antitermination factor [Bradyrhizobium sp. BTAi1]
Length = 169
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 10/170 (5%)
Query: 1 MTIQDNKK-------DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
M NK + + ++RRG ARLAAVQALYQ+DI G ++++E+E++ ++
Sbjct: 1 MAESSNKPFRGPVRANDRKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGSEV 60
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
E YL + +FR I+ GV+ + ID ++ + L W R++ IL ++LRAG
Sbjct: 61 EG---EQYLPAEAAFFRDIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAY 117
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
EL VP +V++SEYV IAH F DE +NAVL++++R+ G
Sbjct: 118 ELERRKDVPAKVVVSEYVDIAHAFVERDETGMVNAVLEQLARQYRADEMG 167
>gi|316934108|ref|YP_004109090.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
gi|315601822|gb|ADU44357.1| NusB antitermination factor [Rhodopseudomonas palustris DX-1]
Length = 173
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 7/161 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E
Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEG---EQ 69
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL + +FR I+ GV+ ++ ID LI L + W +R+D IL +++RAG EL
Sbjct: 70 YLPAEAAFFRDIVSGVVREQKQIDPLIDDLLAKGWPLARIDAILRAVMRAGAYELEHRKD 129
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P V++SEYV +AH F DE +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFREDE 170
>gi|319407319|emb|CBI80960.1| N utilization substance protein B [Bartonella sp. 1-1C]
Length = 156
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M K L+L+++RG ARLAAVQALYQ+D++G E+I+EY+ YR D + S
Sbjct: 1 MDDVKGKDFLRLANKRGAARLAAVQALYQMDMVGIGAMEVIAEYKAYRLGKDIDG---SQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI
Sbjct: 58 YLDADFQWFCSIIVGVVRDQKQLDPMLHKQLSEEWALSRLDSTLRAILRAGLWELINRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
VP+ VI++EY+ IA FF DEP+ +NAVLD ++++
Sbjct: 118 VPIAVILNEYIDIAKAFFDNDEPRLVNAVLDSIAKE 153
>gi|121602835|ref|YP_988938.1| transcription antitermination protein NusB [Bartonella
bacilliformis KC583]
gi|120615012|gb|ABM45613.1| transcription antitermination factor NusB [Bartonella bacilliformis
KC583]
Length = 154
Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + K L ++RG ARLAAVQALYQ+DI+G E +EYE YR + + YL
Sbjct: 1 MTNIKYSPCLVNKRGAARLAAVQALYQMDIVGTGVMETAAEYEAYRLGKEIDG---DQYL 57
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D +WFR II GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ ELI VP
Sbjct: 58 DADFQWFRAIIAGVVRDQKKLDPMLHQQLSEEWSLSRLDSILRAILRAGLWELINRKEVP 117
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V VII+EYV IA FF EPK +NAVLD ++
Sbjct: 118 VAVIINEYVDIAKAFFEDGEPKLVNAVLDNTAKNSRA 154
>gi|319405757|emb|CBI79380.1| N utilization substance protein B [Bartonella sp. AR 15-3]
Length = 156
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M K L L+++RG ARLAAVQALYQ+DI+G E+I+EY+ YR D + S
Sbjct: 1 MDDIKGKDSLILANKRGAARLAAVQALYQMDIVGIGVREVIAEYKAYRLGKDIDG---SQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WFR I+ GV+ ++ +D ++ L+E+W+ SRLD L +ILRAG+ ELI
Sbjct: 58 YLDADFQWFRSIVVGVVKDQKQLDPMLHQQLSEEWALSRLDSTLRAILRAGLWELINRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
VPV VI++EYV IA FF +EP+ +NAVLD ++++
Sbjct: 118 VPVAVIMNEYVDIAKAFFESNEPRLVNAVLDSIAKE 153
>gi|319408451|emb|CBI82106.1| N utilization substance protein B [Bartonella schoenbuchensis R1]
Length = 156
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +K L+++RG+ARLAAVQALYQ+DI+G EI +EY+ YR D +
Sbjct: 1 MVDIKSKHSSHLANKRGVARLAAVQALYQMDIVGIGVREIAAEYKAYRLGKDIDG---DQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WFR +I GV+ ++ +D ++ L+E+WS SRLD IL +ILRAG+ EL+ +
Sbjct: 58 YLDADFQWFRAVIAGVVQNQKQLDPMLQQKLSEEWSLSRLDSILRAILRAGLWELMNHKN 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P VI+SEYV +A FF GDEP+ +NA+LD+++++ +
Sbjct: 118 IPTAVIVSEYVDVAKAFFEGDEPRLVNAILDRIAKEIRL 156
>gi|240850687|ref|YP_002972087.1| transcription antitermination protein NusB [Bartonella grahamii
as4aup]
gi|240267810|gb|ACS51398.1| transcription antitermination protein NusB [Bartonella grahamii
as4aup]
Length = 156
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ + +++RG ARLAAVQALYQ+DI+G E +EYE YR D +
Sbjct: 1 MADIKSRHFPRSANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYRLGKDIDG---DQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D L+ L+ +WS SRLD IL +ILRAG+ ELI
Sbjct: 58 YLEADFQWFLAIITGVVKDQKQLDPLLHQQLSAEWSLSRLDSILRAILRAGLWELINRKD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VPV V+++EYV IA FF GDEPK +NAVLD +++K +
Sbjct: 118 VPVAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKVRL 156
>gi|16125609|ref|NP_420173.1| transcription antitermination protein NusB [Caulobacter crescentus
CB15]
gi|221234359|ref|YP_002516795.1| transcription antitermination protein NusB [Caulobacter crescentus
NA1000]
gi|22095966|sp|Q9A8J3|NUSB_CAUCR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772622|sp|B8H535|NUSB_CAUCN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|13422711|gb|AAK23341.1| N utilization substance protein B [Caulobacter crescentus CB15]
gi|220963531|gb|ACL94887.1| N utilization substance protein B [Caulobacter crescentus NA1000]
Length = 149
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +ARLAAVQALYQ+++ G +I E+ +RF D E D +F +
Sbjct: 7 QPRSVARLAAVQALYQMEVSGAGVDSVIREFGEHRFDRDVEG---EQLAAADETFFADLA 63
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ + ID I L W RLD ++LRAG EL+ VP EV+I+EYV I
Sbjct: 64 RGVVTNQAKIDQGIVKRLASGWRLERLDATARAVLRAGAFELMYRSDVPTEVVINEYVEI 123
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A FF G E FIN LD ++R
Sbjct: 124 AKSFFEGPESGFINGALDAIARDAR 148
>gi|49080752|gb|AAT50054.1| PA4052 [synthetic construct]
Length = 160
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ QD+ K + R AR AVQALY I G EI +++ T
Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
++ + VD +F I+HGV +K +D CL + +D + +ILR EL
Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N VLDK++ +
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRAAE 153
>gi|295689070|ref|YP_003592763.1| Nusb antitermination factor [Caulobacter segnis ATCC 21756]
gi|295430973|gb|ADG10145.1| NusB antitermination factor [Caulobacter segnis ATCC 21756]
Length = 149
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R +ARLAA+QALYQ+++ G +I E+ +RF D E D +F +
Sbjct: 6 TQPRSVARLAAIQALYQMEVSGAGVDSVIREFSEHRFDRDVEG---ERLAAADETFFAEL 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ + +D I L W RLD ++LRAG EL+ VP EV+I+EYV
Sbjct: 63 AKGVVAHQAKVDQGIVKRLASGWRLERLDATARAVLRAGAYELMYRPDVPTEVVINEYVE 122
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
IA FF G E FIN LD ++R
Sbjct: 123 IAKSFFEGPEAGFINGALDAIARDAR 148
>gi|296448765|ref|ZP_06890618.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
gi|296253723|gb|EFH00897.1| NusB antitermination factor [Methylosinus trichosporium OB3b]
Length = 152
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +RLA VQALYQ+++ G EI +E+E + + E Y +L++FR I+ G
Sbjct: 6 RSASRLAIVQALYQMEVAGKGLNEIYAEFEVHWIGREIEG---DQYKPAELQFFRDIVKG 62
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+D + ID + L W R++ ++ +ILRAG EL VPV+V+I EYV +A
Sbjct: 63 VLDNQTPIDRALDQALQGGWPLQRIESVMRAILRAGAYELGFRRDVPVKVVIKEYVDVAG 122
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
FF E INAVLD+++R+ + G
Sbjct: 123 AFFGPTESGMINAVLDRLARQARPEHFGE 151
>gi|152985013|ref|YP_001346435.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
PA7]
gi|150960171|gb|ABR82196.1| transcription antitermination factor NusB [Pseudomonas aeruginosa
PA7]
Length = 159
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ QD+ K + R AR AVQALY I G EI +++ T
Sbjct: 1 MSNQDSGSPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
++ + VD +F I+HGV +K +D CL + +D + +ILR EL
Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N VLDK++ +
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRAAE 153
>gi|39935796|ref|NP_948072.1| transcription antitermination protein NusB [Rhodopseudomonas
palustris CGA009]
gi|81562525|sp|Q6N688|NUSB_RHOPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39649649|emb|CAE28171.1| antitermination factor, NusB [Rhodopseudomonas palustris CGA009]
Length = 174
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + +K ++RRG ARLAAVQALYQ+DI G E +E+E++ + E
Sbjct: 17 MTPKGERK----ANRRGAARLAAVQALYQMDIGGAGINETFAEFESFWIGNEVEG---EQ 69
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL + +FR I+ GV+ ++ ID LI L W +R+D IL +++RAG EL
Sbjct: 70 YLPAEAAFFRDIVAGVVREQKQIDPLIDDLLARGWPLARIDAILRAVMRAGAYELEHRKD 129
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P V++SEYV +AH F DE +NAVLD+++R+
Sbjct: 130 IPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARRFREDE 170
>gi|15599247|ref|NP_252741.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
PAO1]
gi|107103566|ref|ZP_01367484.1| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2]
gi|116052089|ref|YP_789067.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889667|ref|YP_002438531.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
LESB58]
gi|254242734|ref|ZP_04936056.1| NusB protein [Pseudomonas aeruginosa 2192]
gi|296387391|ref|ZP_06876890.1| transcription antitermination protein NusB [Pseudomonas aeruginosa
PAb1]
gi|313109495|ref|ZP_07795451.1| NusB protein [Pseudomonas aeruginosa 39016]
gi|22095967|sp|Q9HWX6|NUSB_PSEAE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|9950248|gb|AAG07439.1|AE004821_12 NusB protein [Pseudomonas aeruginosa PAO1]
gi|115587310|gb|ABJ13325.1| NusB [Pseudomonas aeruginosa UCBPP-PA14]
gi|126196112|gb|EAZ60175.1| NusB protein [Pseudomonas aeruginosa 2192]
gi|218769890|emb|CAW25651.1| NusB protein [Pseudomonas aeruginosa LESB58]
gi|310881953|gb|EFQ40547.1| NusB protein [Pseudomonas aeruginosa 39016]
Length = 159
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ QD+ K + R AR AVQALY I G EI +++ T
Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRT--------- 51
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
++ + VD +F I+HGV +K +D CL + +D + +ILR EL
Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N VLDK++ +
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRAAE 153
>gi|85715455|ref|ZP_01046436.1| transcription antitermination protein NusB [Nitrobacter sp.
Nb-311A]
gi|85697650|gb|EAQ35526.1| transcription antitermination protein NusB [Nitrobacter sp.
Nb-311A]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 3/151 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ ++RRG ARLAAVQALYQ++I G ++ +E++++ + E YL + +FR
Sbjct: 10 RKANRRGAARLAAVQALYQMEISGAGVNDVFAEFDSHWLGNEVEG---DRYLPAEAAFFR 66
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV+ + ID LI L++ W R+ IL ++LRAG EL +P V++SEY
Sbjct: 67 DVVAGVVRDQVRIDPLIDDALSKGWPLKRIAAILRAVLRAGSYELEHRKDIPARVVVSEY 126
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V +AH F +E +NAVLD+++R+
Sbjct: 127 VDVAHAFVENEEAGMVNAVLDQIARRFRAAE 157
>gi|254236941|ref|ZP_04930264.1| NusB protein [Pseudomonas aeruginosa C3719]
gi|126168872|gb|EAZ54383.1| NusB protein [Pseudomonas aeruginosa C3719]
Length = 159
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 1 MTIQDN-----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ QD+ K + R AR AVQALY I G EI +++
Sbjct: 1 MSNQDSGNPAAKPPKGKTAARRKARSLAVQALYSWQIAGQPLHEIEAQFRA--------- 51
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
++ + VD +F I+HGV +K +D CL + +D + +ILR EL
Sbjct: 52 --DNDFSEVDGAYFHEILHGVPRQKSELDSTFEPCLDR--PLAEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N VLDK++ +
Sbjct: 108 RNRIDVPYKVVINEGIELAKTFGATDGHKFVNGVLDKLAPRLRAAE 153
>gi|296532920|ref|ZP_06895581.1| transcription antitermination factor NusB [Roseomonas cervicalis
ATCC 49957]
gi|296266750|gb|EFH12714.1| transcription antitermination factor NusB [Roseomonas cervicalis
ATCC 49957]
Length = 170
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 79/157 (50%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ R +R+AA+QAL+Q + G S +I ++ +R D +
Sbjct: 11 KKPRPPVAGRPRTGSRVAAIQALFQSEQSGESAETVIDQFVRFRIGPDAGGFEDGRVPLA 70
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D+ F ++ GV + + +D ++ L W+ +RLD +L ++LRA EL P
Sbjct: 71 DVPLFAGVVRGVARQSEALDGILQGHLAGDWTVARLDPVLRALLRAAAHELSSGTEPPAR 130
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V+I+EY+ IAH FF G+EP+F N VLD ++R
Sbjct: 131 VVINEYMDIAHGFFSGEEPRFANGVLDAMARSLRAPE 167
>gi|146341341|ref|YP_001206389.1| transcription antitermination protein NusB [Bradyrhizobium sp.
ORS278]
gi|166918805|sp|A4YW92|NUSB_BRASO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|146194147|emb|CAL78168.1| antitermination factor (L factor) (N utilization substance protein
B) [Bradyrhizobium sp. ORS278]
Length = 168
Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ ++RRG ARLAAVQALYQ+DI G ++++E+E++ + E YL + +FR
Sbjct: 17 RKANRRGAARLAAVQALYQMDIAGAGINDVLAEFESHWLGNEVEG---EQYLPAEAAFFR 73
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I+ GV+ + ID ++ + L W R++ IL ++LRAG EL VP +V++SEY
Sbjct: 74 DIVSGVVRDQTKIDPVLDTALERGWPLQRIEAILRAVLRAGAYELERRKDVPAKVVVSEY 133
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V IAH F DE +NAVL++++R+ G
Sbjct: 134 VDIAHAFVERDETGMVNAVLEQLARQYRGDEMG 166
>gi|188582598|ref|YP_001926043.1| NusB antitermination factor [Methylobacterium populi BJ001]
gi|179346096|gb|ACB81508.1| NusB antitermination factor [Methylobacterium populi BJ001]
Length = 172
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R ARLA VQALY+++I + ++E+E + + + V + +FR
Sbjct: 15 SKPNTRTGARLAVVQALYEMEISDKGVIDALAEFEAFWIGQEIDGVVHP---PAETAFFR 71
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ G ++ ++ ID + + L + W RL+++L +ILRAG EL+ VP IS+Y
Sbjct: 72 DVLRGAVEEQRAIDPKLDAALAKGWPLRRLEVVLRAILRAGAYELMFRRDVPARAAISQY 131
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V +AH F+ GDEP +NAVLD+V R+ G +A +
Sbjct: 132 VDVAHSFYGGDEPGMVNAVLDRVGREVRSTEFGIPAAPKK 171
>gi|220927277|ref|YP_002502579.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
gi|219951884|gb|ACL62276.1| NusB antitermination factor [Methylobacterium nodulans ORS 2060]
Length = 156
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R ARLA VQALY+++I G + ++E+E + + + +F
Sbjct: 1 MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHP---PAETAFF 56
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE
Sbjct: 57 RDVLRGAVEEQRVIDQRLDGALSAGWPLRRVEAVLRAILRAGAYEVIFRKDVPVRVAISE 116
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
YV +AH F+ GDEP +NAVLDKV+R +
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEE 148
>gi|49474164|ref|YP_032206.1| transcription antitermination protein NusB [Bartonella quintana
str. Toulouse]
gi|81647100|sp|Q6G004|NUSB_BARQU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|49239668|emb|CAF26039.1| N utilization substance protein B [Bartonella quintana str.
Toulouse]
Length = 156
Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M K +L+++RG ARLAAVQALYQ+DI+G E +EYE Y + + +
Sbjct: 1 MADIKGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLEKNIDG---NQ 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
YL D +WF II GV+ ++ +D ++ L+ +WS SRLD IL +ILRAG+ ELI
Sbjct: 58 YLDADFQWFLAIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSILRAILRAGLWELINRQD 117
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP+ V+++EYV IA FF GDEPK +NAVLD +++K +
Sbjct: 118 VPIAVVMNEYVDIAKAFFEGDEPKLVNAVLDSMAKKIRL 156
>gi|302383000|ref|YP_003818823.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
15264]
gi|302193628|gb|ADL01200.1| NusB antitermination factor [Brevundimonas subvibrioides ATCC
15264]
Length = 176
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +ARLAAVQALYQ+++ G +I+E+ +RF AD E D +F ++
Sbjct: 32 RARTVARLAAVQALYQMELAGEGVETVITEFSNHRFDADIEG---EPLAEADEAYFADVV 88
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ ++ ID + + L W RLD L ++LR G EL VP E++I EYV +
Sbjct: 89 RGVIQSQREIDASVKARLASNWRLERLDATLRALLRCGAWELAHRTDVPKEIVIDEYVEL 148
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
A FF E KF+NA LD V+R K
Sbjct: 149 AKAFFDEAEAKFVNAALDGVARDVRPK 175
>gi|323138566|ref|ZP_08073634.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
gi|322396200|gb|EFX98733.1| NusB antitermination factor [Methylocystis sp. ATCC 49242]
Length = 150
Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R ARLA VQALYQ+++ G EI +E+E++ + E Y ++ +FR ++
Sbjct: 5 QRSAARLAIVQALYQMEVAGKGLNEIFAEFESHWIGREIEGV---QYKPAEVTFFRDVLQ 61
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ + ID I L+ W SR++ ++ + LRAG EL VP V+I EYV +A
Sbjct: 62 GVLTDQVAIDRQIDRVLSGGWPLSRVEAVMRAALRAGAYELRARKDVPARVVIKEYVDVA 121
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
FF E +NAVLDK++R+E + G
Sbjct: 122 GAFFGPTESGMVNAVLDKIAREERAEELG 150
>gi|170744825|ref|YP_001773480.1| NusB antitermination factor [Methylobacterium sp. 4-46]
gi|168199099|gb|ACA21046.1| NusB antitermination factor [Methylobacterium sp. 4-46]
Length = 156
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R ARLA VQALY+++I G + ++E+E + + + +F
Sbjct: 1 MKPAE-RSGARLAVVQALYEMEISGKGVIDALAEFEAFWIGQVVDGIEHP---PAETAFF 56
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ G ++ ++ ID + L+ W R++ +L +ILRAG E+I VPV V ISE
Sbjct: 57 RDVLRGAVEEQRLIDQRLDGALSAGWPLRRIEAVLRAILRAGAYEVIFRKDVPVRVAISE 116
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
YV +AH F+ GDEP +NAVLDKV+R + +
Sbjct: 117 YVDVAHSFYGGDEPGLVNAVLDKVARAARAEELDKAA 153
>gi|162147540|ref|YP_001602001.1| N utilization substance protein B-like protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545645|ref|YP_002277874.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
gi|161786117|emb|CAP55699.1| N utilization substance protein B homolog [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533322|gb|ACI53259.1| NusB antitermination factor [Gluconacetobacter diazotrophicus PAl
5]
Length = 183
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 1 MT-IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-----ADTE 54
M I D+ + R +R+A VQAL+QI+ G + +I+++ +R E
Sbjct: 1 MNGIPDDDRTHSKPRSRTASRVAVVQALFQIEQAGDTPDTVIAQFLRHRLGTASGADQGE 60
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ D+ F + + R++ ID LI L W RLD +L ++LRA E
Sbjct: 61 EYEDGRVPEADIRLFEQVARAAVARREQIDALIVEVLPPSWPVGRLDPVLRALLRAAGAE 120
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L VP VII+EY+ IAH FF GDEPK +N VLD ++R+
Sbjct: 121 LAATGGVPTRVIINEYLDIAHGFFSGDEPKMVNGVLDTLARRLRA 165
>gi|217976846|ref|YP_002360993.1| NusB antitermination factor [Methylocella silvestris BL2]
gi|217502222|gb|ACK49631.1| NusB antitermination factor [Methylocella silvestris BL2]
Length = 154
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R ARLAAVQALYQ+D+ E +E+E++ + E + Y +L +F
Sbjct: 1 MSNADGRSAARLAAVQALYQMDVTDKGLKETCAEFESFWLGGEVEGQL---YKPAELAFF 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I+ GV+ + ID I L E W R+D +L +ILRAG EL + VP V I E
Sbjct: 58 KDILSGVLADQGPIDRAIDQTLVEGWPLVRIDSVLRAILRAGAYELKKRTDVPARVAIKE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
YV +A FF +E +NAVLD ++R+ +
Sbjct: 118 YVDVAGAFFEREESGMVNAVLDHLARRFRAEEFERP 153
>gi|315499922|ref|YP_004088725.1| nusb antitermination factor [Asticcacaulis excentricus CB 48]
gi|315417934|gb|ADU14574.1| NusB antitermination factor [Asticcacaulis excentricus CB 48]
Length = 177
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--ADTELDVESVY 61
+ + LK R +ARL VQALYQ++I G +I E+ +RF + E E
Sbjct: 21 ESGRLSLKEKRARTVARLVLVQALYQMEIAGTGVESVIREFADFRFDGNIEGECGEEQRL 80
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D +F + ++ + ID+LI+ L W R+D L +ILRAG EL V
Sbjct: 81 GTADEAFFADGLRTIVKAQAEIDVLIAERLASNWRLDRIDTTLRAILRAGAWELKFRPDV 140
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VEV+I+EYV IA FF +E +F+N LD +++
Sbjct: 141 AVEVVINEYVEIAKAFFGNEEARFVNGALDGIAKDAR 177
>gi|254417847|ref|ZP_05031571.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
gi|196184024|gb|EDX79000.1| transcription antitermination factor NusB [Brevundimonas sp. BAL3]
Length = 174
Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R ++RLAAVQALYQ+++ G +I+E+ +RF D E D +F
Sbjct: 29 KQRRARTVSRLAAVQALYQMELAGEGVETVITEFANFRFDTDIEG---EALAEADEAYFA 85
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I+ GV++ ++ ID I + L W R+D L ++LR+G ELI+ P EV+I EY
Sbjct: 86 DIVRGVIESQRDIDTAIKARLASNWKLERIDATLRALLRSGAWELIKHPETPREVVIDEY 145
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A FF E +F+NA LD VSR
Sbjct: 146 VELAKAFFDDSEARFVNAALDGVSRDTR 173
>gi|330993560|ref|ZP_08317495.1| N utilization substance protein B-like protein [Gluconacetobacter
sp. SXCC-1]
gi|329759590|gb|EGG76099.1| N utilization substance protein B-like protein [Gluconacetobacter
sp. SXCC-1]
Length = 177
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 5/169 (2%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA---DTELDV 57
MT D + K R +R+AAVQAL+QI+ G S +I+++ +R
Sbjct: 1 MTQTDGDRQPK-VRSRTASRVAAVQALFQIEQAGESPEHVINQFNRHRLGTSVVQDGSYA 59
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E D F +++ G + R++ ID L+ L W +RLD +L +I+ A E+
Sbjct: 60 EGQVPDADARLFGIVVRGAVARQERIDGLLHEILPASWPLARLDPVLRAIMHAAGGEMTG 119
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
VP VII+EY+ IAH F GDEP+ +N VLD +SR+ + + + +
Sbjct: 120 ADPVPARVIINEYMDIAHGFLAGDEPRMLNGVLDALSRRLQ-EPAAQPA 167
>gi|298291642|ref|YP_003693581.1| NusB antitermination factor [Starkeya novella DSM 506]
gi|296928153|gb|ADH88962.1| NusB antitermination factor [Starkeya novella DSM 506]
Length = 160
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + K R+ ARL AVQALYQ+D+ +I++++E++ + E D
Sbjct: 1 MTTGSKPANHKP-LRKSAARLNAVQALYQMDVAATPLADILAQFESHWIGHEIEGDE--- 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ FR I+ GV+ + ID ++ + L + W R++ +L ++LRAG EL E
Sbjct: 57 IASADVNLFRDIVGGVVREQLSIDPVLDAALVKGWPLKRIEAVLRAVLRAGAYELSERPD 116
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP V+++EYV +A F +E +NAVLD ++R +
Sbjct: 117 VPARVVVAEYVNVAAAFLDREETGMVNAVLDGLARDKRPAE 157
>gi|110633492|ref|YP_673700.1| transcription antitermination protein NusB [Mesorhizobium sp. BNC1]
gi|119390783|sp|Q11J90|NUSB_MESSB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110284476|gb|ABG62535.1| NusB antitermination factor [Chelativorans sp. BNC1]
Length = 167
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 6/167 (3%)
Query: 1 MTIQDNKK--DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT + + +++RG ARLAAVQALYQ+D+ G E +EYE +R + + D+
Sbjct: 1 MTTPSKSPAENFRPANKRGAARLAAVQALYQMDVAGTGLLETTAEYEAFRLGKEIDGDL- 59
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
Y D +WFR I+ GV++ + ID +I LTE W SRLD L +ILRAGV EL +
Sbjct: 60 --YREADAQWFRAILSGVIENQTFIDPVIRQSLTEDWPLSRLDSTLRAILRAGVYELSKR 117
Query: 119 HSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGC 164
VPV V++SEY+ IA F +EPK +NAVLD+V+R+ + G
Sbjct: 118 SDVPVPVVVSEYIDIAKAFYGEEEEPKLVNAVLDRVARRMRGEGKGK 164
>gi|146276474|ref|YP_001166633.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
gi|145554715|gb|ABP69328.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17025]
Length = 157
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+++ +K+ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D
Sbjct: 1 MSVKPDKRQMK-----SASRLYAVQALFQMECSGQTVEQVAREFETHRFGAIYEGDE--- 52
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D FR I+ G ++R+ ID L L KW R+D ++ ++ RA EL+E
Sbjct: 53 MAEGDARSFRSIVSGAVNRQAGIDQLTDRALVAKWPIDRIDPVIRALFRAAGSELLESD- 111
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V IA FF EPKF+NAVLD ++R+ +
Sbjct: 112 TPPKVVINEFVDIAKAFFPDGREPKFVNAVLDHMAREARPE 152
>gi|220934735|ref|YP_002513634.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996045|gb|ACL72647.1| NusB antitermination factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 149
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT DN++ LSH R +R A+QALYQ + G +I+ +Y +
Sbjct: 1 MTGPDNRR---LSHARRQSRRVAMQALYQWQLTGYHPKDILLQY-----------REDPE 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D ++FR ++ GV ++ +D L++ + S + LD + +ILR EL +
Sbjct: 47 LEKADADYFRELLLGVTEQVDELDELLAPQMDR--SVAELDPVERAILRLATFELKQRID 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P V+I+E V + F D KF+N VLDK+ R+ +
Sbjct: 105 IPYRVVINEAVELTKKFGATDAHKFVNGVLDKLGRQLRAMEASA 148
>gi|99081967|ref|YP_614121.1| NusB antitermination factor [Ruegeria sp. TM1040]
gi|99038247|gb|ABF64859.1| NusB antitermination factor [Ruegeria sp. TM1040]
Length = 160
Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT +D K K + R ARL AVQAL+Q++ ST ++I E+E +RF A E D
Sbjct: 1 MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEGDE-- 58
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
Y D + FR +++ ++ + ID + L KW +R+D L ++ RA E +E
Sbjct: 59 -YAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVESD 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
PV+V+I+EYV IA FF E F+NAVLD ++R+ + +
Sbjct: 118 -TPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 158
>gi|304320998|ref|YP_003854641.1| transcription antitermination protein NusB [Parvularcula
bermudensis HTCC2503]
gi|303299900|gb|ADM09499.1| transcription antitermination protein NusB [Parvularcula
bermudensis HTCC2503]
Length = 166
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + + +ARL AVQALYQ++ G +I E+ +R + + S
Sbjct: 1 MTQIRQMQRPRSVEAKTMARLGAVQALYQMEHAGTGVEAVIREFVDHRLGGEMDG---SA 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+F I+ GV++ ++ ID I L E W+ RLD +ILRAG+ EL+
Sbjct: 58 LHEADDEFFAAIVRGVVEGQRRIDPFIQRHLAEGWTLKRLDATARAILRAGLFELVSRPD 117
Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSG 163
+P ++ EYV +A+ FF EP+FINAVLD +++ G
Sbjct: 118 IPWRTVVDEYVELANSFFEKGEAEPRFINAVLDATAKEVRADDFG 162
>gi|23014664|ref|ZP_00054469.1| COG0781: Transcription termination factor [Magnetospirillum
magnetotacticum MS-1]
Length = 156
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + +R ARLAAVQ LYQ+++ G + + + R +
Sbjct: 1 MNTSNPS-----VAKRSAARLAAVQVLYQMEMTGTDCERALQDAKDRRAAE-----PKGR 50
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D ++ GV + + ID + L+ W+ RL+ +L +I+R G EL
Sbjct: 51 MADPDSSLLNQVVRGVSAQLEDIDRHVGGALSGDWTVERLEAVLRAIIRGGAWELSARPQ 110
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
P V ISE+V +AH F+ G EP +NAVLD +++ G
Sbjct: 111 TPARVCISEWVDVAHAFYSGPEPGLVNAVLDHLAQTLRGGEMGK 154
>gi|254465261|ref|ZP_05078672.1| transcription antitermination factor NusB [Rhodobacterales
bacterium Y4I]
gi|206686169|gb|EDZ46651.1| transcription antitermination factor NusB [Rhodobacterales
bacterium Y4I]
Length = 160
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ QD++ ++ R ARL A+QAL+Q++ G + ++I E+E +RF A E D
Sbjct: 1 MSTQDSRPKGNGKNQMRSAARLYALQALFQMEQSGQTFDQVIVEFEDHRFGAVYEGDE-- 58
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + FR ++ ++ + ID + L KW +R+D L ++ RA EL +
Sbjct: 59 -MAEGDTKVFRKLVREAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSD 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
P +V+I+E+V IA FF EPKF+NAVLD ++R+
Sbjct: 118 -TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAR 156
>gi|329850578|ref|ZP_08265423.1| transcription antitermination factor NusB [Asticcacaulis
biprosthecum C19]
gi|328840893|gb|EGF90464.1| transcription antitermination factor NusB [Asticcacaulis
biprosthecum C19]
Length = 173
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +ARL VQALYQ++I G ++ E+ +RF D E D +F
Sbjct: 30 KRARTVARLVLVQALYQMEITGTGVETVVREFADHRFDTDLEG---EPLAQADEAFFGEG 86
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
V+ + ID LI+ L W RLD + +ILRAG EL + +EV+I+EYV
Sbjct: 87 ARAVVREQGVIDPLITHRLASGWRLERLDTTVRAILRAGTWELKFRPDIGLEVVINEYVE 146
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
IA FF E +F+NA LD V++
Sbjct: 147 IARAFFGETEARFVNAALDGVAKDVR 172
>gi|260434089|ref|ZP_05788060.1| transcription antitermination factor NusB [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417917|gb|EEX11176.1| transcription antitermination factor NusB [Silicibacter
lacuscaerulensis ITI-1157]
Length = 160
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT D K + ARL AVQAL+Q++ G +T ++++E+ +RF A E D
Sbjct: 1 MTQTDTPKPANRKRLMKSAARLYAVQALFQMEQSGQTTEQVVNEFLDHRFGAVYEGDE-- 58
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
L D FR ++ ++ + ID + L KW SR+D L ++ RA EL +
Sbjct: 59 -MLEGDSALFRKLVDDAVNYQAPIDQMTDRALVAKWPISRIDPTLRALFRAAGAELSQSD 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V +A FF EPKF+NAVLD ++R+ + +
Sbjct: 118 -TPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAKPE 158
>gi|182677206|ref|YP_001831352.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
gi|182633089|gb|ACB93863.1| NusB antitermination factor [Beijerinckia indica subsp. indica ATCC
9039]
Length = 155
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + +R ARLAAVQALYQ+++ E ++E+E++ + E Y ++ +F
Sbjct: 1 MANAEQRSAARLAAVQALYQMEVTEKGLNETLAEFESFWIGNEIEG---DQYKEAEIAFF 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R I+ GV+ ++ ID + L + W R+D ++ +ILRAG EL + +P V I E
Sbjct: 58 RDILGGVLADQEPIDRQLDKTLVDGWPLRRVDPVVRAILRAGAYELKKRTDIPARVSIKE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
YV +A FF +E INAVLD+++R+
Sbjct: 118 YVDVAGAFFGREESGMINAVLDELARRYRADEFAA 152
>gi|149202343|ref|ZP_01879316.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
gi|149144441|gb|EDM32472.1| transcription antitermination factor NusB [Roseovarius sp. TM1035]
Length = 160
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + ARL AVQAL+Q++ G S+ + E+ +RF A+ + V+
Sbjct: 1 MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQSSDTVSEEFLDFRFGAEVDEGVD-- 58
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D++ FR ++ + + ID + L KW +R+D L ++ RA EL++
Sbjct: 59 MAEGDVDLFRKLLDDAVSWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSD- 117
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I EYV +A F+ E KF+NAVLD ++R+ +
Sbjct: 118 TPPKVVIMEYVDVAKAFYPDGKESKFVNAVLDHMAREARPE 158
>gi|83311445|ref|YP_421709.1| transcription termination factor [Magnetospirillum magneticum
AMB-1]
gi|119390781|sp|Q2W4S5|NUSB_MAGMM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|82946286|dbj|BAE51150.1| Transcription termination factor [Magnetospirillum magneticum
AMB-1]
Length = 156
Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R ARLAAVQ LYQ+++ G T + + + R + D ++
Sbjct: 10 KRSAARLAAVQVLYQMEMTGADTERALQDAKDRRAAE-----PKGRMADPDNSLLNQVVR 64
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + + ID + L+ W+ RL+ +L +I+RAG EL P V ISE+V +A
Sbjct: 65 GVSAQLEDIDGHVGRALSGDWTVERLEAVLRAIVRAGAWELSARPQTPARVCISEWVDVA 124
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
H F+ G EP +N VLD +++ G
Sbjct: 125 HAFYSGPEPGLVNGVLDHLAQTLRGGEMGK 154
>gi|192359459|ref|YP_001983152.1| transcription antitermination protein NusB [Cellvibrio japonicus
Ueda107]
gi|190685624|gb|ACE83302.1| transcription antitermination factor NusB [Cellvibrio japonicus
Ueda107]
Length = 168
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++ R +AR A+QALYQ + G S I +E+ T ++
Sbjct: 12 MTSSPGSDKSHIAATRRMARHYAMQALYQWHMAGSSLNAIEAEFRT-----------DND 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD+++F ++HGV ++ ++ L ++ S LD I ++LR EL
Sbjct: 61 MSKVDVDYFHELLHGVPEQLSGLEEQFQPFLVDR-SLEELDAITRALLRMATYELKNRID 119
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E V +A F D KFIN VLDK +
Sbjct: 120 VPYKVVINEAVSLAKKFGAEDSHKFINGVLDKTAEVLRALE 160
>gi|307825577|ref|ZP_07655795.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
gi|307733463|gb|EFO04322.1| NusB antitermination factor [Methylobacter tundripaludum SV96]
Length = 144
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R AR AAVQALYQ + G + +EI ++ E +F
Sbjct: 1 MSQARTNARKAAVQALYQWQMAGQNLSEIERQFLE-----------EERLKDAQKSYFVE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +GV ID ++S + +D + +ILR GV EL+ ++P V+++E +
Sbjct: 50 LFYGVPKNLDAIDQVLSEFVDR--PVDTIDPVERAILRIGVYELLYRLNMPYRVVLNEGI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A DF K++N +LDKV+++
Sbjct: 108 NLAKDFGADGSHKYVNGILDKVAQQTRAGE 137
>gi|154248201|ref|YP_001419159.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
gi|154162286|gb|ABS69502.1| NusB antitermination factor [Xanthobacter autotrophicus Py2]
Length = 163
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
K ++ ARL AVQALYQ+D+ +I++E+E++ + E + D+
Sbjct: 11 PAKPM-KKSAARLGAVQALYQMDLAQTPLNDILAEFESHWLGQEVEGVE---FPEADVRL 66
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR ++ GV++ ++ ID ++ + LT+ W R++ +L ++LRAG EL VP V+I+
Sbjct: 67 FRTVVEGVLNDQRRIDPMVDNALTKGWPLKRVEAVLRAVLRAGAFELSAKPDVPARVVIT 126
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EYV +A F DE +NAVLD ++
Sbjct: 127 EYVNVAGAFLDRDETGMVNAVLDALAHDLRPDE 159
>gi|153878112|ref|ZP_02004488.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
gi|152065424|gb|EDN65512.1| transcription antitermination protein NusB [Beggiatoa sp. PS]
Length = 164
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYR-FCADTELDVESVY 61
+ +K R +AR +QALYQ + G +T I S++ + + E
Sbjct: 1 MPAKRKTFSP-KARHVARERVLQALYQWQLTGQNTQLIESQFLDESTLSKEEDESEEPDM 59
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D+ +F+ ++H + ++ +D L + L ++LD + +ILR G EL C +
Sbjct: 60 QKADIPYFKQLLHSIPEKTSDLDKLFAPFLDR--KITQLDPVELAILRIGSYELTHCQDI 117
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P +V+I+E V +A F K+IN VLDK++
Sbjct: 118 PFKVVINEAVELAKQFGAEQSHKYINGVLDKLA 150
>gi|56696640|ref|YP_167001.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
gi|56678377|gb|AAV95043.1| transcription antitermination factor NusB [Ruegeria pomeroyi DSS-3]
Length = 160
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ D K + + + ARL AVQAL+Q++ G + ++SE+ +RF A E D
Sbjct: 1 MSQSDTPKPVNRKRQMKSAARLYAVQALFQMEHSGQTVESVVSEFLEHRFGAVYEGDE-- 58
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D FR ++ ++ + ID + L KW +R+D L ++ RA E +
Sbjct: 59 -LAEGDAALFRALVGDAVNNQALIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFSQND 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
P +V+I+E+V IA FF E F+NAVLD ++R+
Sbjct: 118 -TPPKVVITEFVDIARAFFPEGRETSFVNAVLDHMAREAR 156
>gi|126463172|ref|YP_001044286.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|221640214|ref|YP_002526476.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
gi|126104836|gb|ABN77514.1| NusB antitermination factor [Rhodobacter sphaeroides ATCC 17029]
gi|221160995|gb|ACM01975.1| NusB antitermination factor [Rhodobacter sphaeroides KD131]
Length = 157
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+++ +++ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D
Sbjct: 1 MSVKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE--- 52
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + FR I+ G ++R+ ID + L KW R+D ++ ++ RA EL+E
Sbjct: 53 MAEGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESE- 111
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V IA FF EPKF+NAVLD ++R+ +
Sbjct: 112 TPPKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 152
>gi|259416248|ref|ZP_05740168.1| transcription antitermination factor NusB [Silicibacter sp.
TrichCH4B]
gi|259347687|gb|EEW59464.1| transcription antitermination factor NusB [Silicibacter sp.
TrichCH4B]
Length = 164
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 10/166 (6%)
Query: 1 MTIQDNKKD-----LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
MT +D K + R ARL AVQAL+Q++ ST ++I E+E +RF A E
Sbjct: 1 MTSKDAPKPGQKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVEFEDHRFGATYEG 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
D Y D + FR +++ ++ + ID + L KW +R+D L ++ RA E
Sbjct: 61 DE---YAEGDTKLFRKLVNDAVNYQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEF 117
Query: 116 IECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
+E PV+V+I+EYV IA FF E F+NAVLD ++R+ + +
Sbjct: 118 VESD-TPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPE 162
>gi|154253354|ref|YP_001414178.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
gi|154157304|gb|ABS64521.1| NusB antitermination factor [Parvibaculum lavamentivorans DS-1]
Length = 171
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
L AVQALYQ+DI E++ E+ +R E + ++ D F ++ GV+ +
Sbjct: 24 LFAVQALYQMDIAATPLDEVVEEFVEHRL---EEPEGDNEIFAADKVHFEDVVRGVVREQ 80
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D+ ++S L + WS +RLD L +ILR G EL C VP++V+I+EYV IAH FF G
Sbjct: 81 RELDVQVNSALAKGWSLARLDATLRAILRCGTYELRRCKDVPLKVVINEYVEIAHAFFEG 140
Query: 141 DEPKFINAVLDKVSRKEEI 159
DEP +NAVLD++ R
Sbjct: 141 DEPGVVNAVLDRLGRDIRA 159
>gi|148261108|ref|YP_001235235.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
gi|326404509|ref|YP_004284591.1| transcription antitermination protein NusB [Acidiphilium multivorum
AIU301]
gi|146402789|gb|ABQ31316.1| NusB antitermination factor [Acidiphilium cryptum JF-5]
gi|325051371|dbj|BAJ81709.1| transcription antitermination protein NusB [Acidiphilium multivorum
AIU301]
Length = 165
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 2/161 (1%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL--DVESVYLHV 64
K + R +AR AAVQALYQ + G + +I ++ +RF + E
Sbjct: 2 KPAGSKARPRTLARAAAVQALYQCEHAGETAETVIDQFVRHRFGRMAGMLGVEEGEVPPP 61
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D+ F I+ ++ +D LI+ L E W RLD +L ++LRA EL P
Sbjct: 62 DVPLFSRIVRTATAQQDVVDPLIAGVLPEAWPMPRLDPVLRALLRAAGAELWMTDGPPAR 121
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
V+I+EY+ +AH F GD + NAVLD+++R
Sbjct: 122 VVINEYLDVAHGFLEGDAVQMGNAVLDRIARTLREGEFTDP 162
>gi|146308867|ref|YP_001189332.1| transcription antitermination protein NusB [Pseudomonas mendocina
ymp]
gi|145577068|gb|ABP86600.1| NusB antitermination factor [Pseudomonas mendocina ymp]
Length = 159
Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 1 MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ N + K R AR A+QALY I G EI +++
Sbjct: 1 MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQF----------- 49
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
V++ + VD +F I+HGV +K +D + L +D + +ILR EL
Sbjct: 50 RVDNDFSKVDGAYFHEILHGVPRQKTELDEAFTPLLDR--PLEEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N +LDK++ K
Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPKLRAAE 153
>gi|103487508|ref|YP_617069.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
gi|119390826|sp|Q1GRI6|NUSB_SPHAL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|98977585|gb|ABF53736.1| NusB antitermination factor [Sphingopyxis alaskensis RB2256]
Length = 149
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K + R ARLAAVQALYQ ++ ++I E+ +R A E ++ Y D+ +F
Sbjct: 3 KRAQSRSAARLAAVQALYQHEMEATPVAQLIHEFHQHRIGAIIE---DAEYADADVPFFD 59
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I+ GV+ R ID I++ L W+ RLD + +ILRAG ELI VPV ++SEY
Sbjct: 60 DIVKGVLARADEIDAAITARLASGWTMERLDRTMKAILRAGTYELIARGDVPVGAVVSEY 119
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V +A FF G E F N +LD + + K
Sbjct: 120 VDVAKAFFDGREAGFANGLLDAIGKDVRKK 149
>gi|114327667|ref|YP_744824.1| n utilization substance protein B [Granulibacter bethesdensis
CGDNIH1]
gi|119390773|sp|Q0BTF1|NUSB_GRABC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114315841|gb|ABI61901.1| n utilization substance protein B [Granulibacter bethesdensis
CGDNIH1]
Length = 163
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEW 68
+ + R +R+AAVQAL+Q + S +I ++ +R A + + ++
Sbjct: 3 RRTRPRTASRVAAVQALFQGEQAQESLEAVIEQFVRFRLGALPGQDGFEDGRIPDAEVPL 62
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F I+ + ID L+ + L +W +RLD +L ++LRAG EL P V+I+
Sbjct: 63 FSRIVRAATKEQDVIDPLLITALPAEWPLARLDPVLRALLRAGACELRMKDGPPPRVVIN 122
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
EY+ IAH FF G+EP+ +N +L+ ++R+ +
Sbjct: 123 EYLDIAHGFFQGEEPRMVNGILNALARQLRPEEFA 157
>gi|83949450|ref|ZP_00958183.1| putative N utilization substance protein B [Roseovarius nubinhibens
ISM]
gi|83837349|gb|EAP76645.1| putative N utilization substance protein B [Roseovarius nubinhibens
ISM]
Length = 160
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + N + R ARL AVQAL+Q++ S E+ E+ +RF A+ + ++
Sbjct: 1 MSDRPNISGNQQRKMRSAARLYAVQALFQMEHSSLSVDEVRREFLEFRFGAEFDDGID-- 58
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E F +I G + + ID + L KW R+D L ++ RA EL++
Sbjct: 59 MQEGDAEHFADVIEGAVQWQAKIDQMTDRALVAKWPIDRIDPTLRALFRAAGAELMQ-EG 117
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I EYV IA FF EPKF+NAVLD ++R+ +
Sbjct: 118 TPPKVVIVEYVDIAKSFFPEGREPKFVNAVLDFMAREARPE 158
>gi|292492483|ref|YP_003527922.1| transcription antitermination factor NusB [Nitrosococcus halophilus
Nc4]
gi|291581078|gb|ADE15535.1| transcription antitermination factor NusB [Nitrosococcus halophilus
Nc4]
Length = 150
Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S+ R AR AA+Q LYQ + G I + + +D +F+
Sbjct: 1 MSNNRSKARAAALQGLYQWQLTGQDVDTIDVGF------------IFQGTRGIDQAYFQE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV ++Q +D + L + +D + C+ILR G EL+ +P V+++E +
Sbjct: 49 LLQGVPQQQQALDECLGPFLDR--PINEVDPVECTILRIGAFELLFRSDIPYRVVLNEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F +++N +LDKV+RK
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVARKVRAIE 136
>gi|304407046|ref|ZP_07388700.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
gi|304344033|gb|EFM09873.1| NusB antitermination factor [Paenibacillus curdlanolyticus YK9]
Length = 156
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR AVQ+LYQ+++ + E + D E+ + R ++
Sbjct: 2 KRRLAREIAVQSLYQMEMNEVTAEEAVDMLMEEARQQDNEIGAHPAEAAKVNAFTRGLVF 61
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++RK ID ++ LT W RL + ILR E++ VP + I+E + +A
Sbjct: 62 GVIERKTAIDQMLQQYLTG-WQVDRLSRVDRQILRLAAYEILFRDDVPPKAAINEAIELA 120
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F + KF+N VL K+ + + + +
Sbjct: 121 KHFGTDESGKFVNGVLGKLISTLKESNADAQPRVDE 156
>gi|157960994|ref|YP_001501028.1| transcription antitermination protein NusB [Shewanella pealeana
ATCC 700345]
gi|189035906|sp|A8H1Q6|NUSB_SHEPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157845994|gb|ABV86493.1| NusB antitermination factor [Shewanella pealeana ATCC 700345]
Length = 135
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +K +D LI+ +T +D + +I+R EL VP +V I+E
Sbjct: 49 RELLGGVATKKSQLDELITPFVTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRKE 157
+ +A F D KF+N +LDK V+R +
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNK 135
>gi|159044792|ref|YP_001533586.1| N utilization substance protein B-like protein [Dinoroseobacter
shibae DFL 12]
gi|157912552|gb|ABV93985.1| N utilization substance protein B-like protein [Dinoroseobacter
shibae DFL 12]
Length = 159
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 6/159 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q +K K + ARL AVQAL+Q++ G S +I E+E +RF A E E
Sbjct: 1 MSKQSDKLAAK-RQAKSAARLYAVQALFQMEAAGQSADSVIREFEDHRFGAIYE---EGE 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ FR + ++ + ID L L W R+D L ++ RA EL+
Sbjct: 57 MAEGHVTLFRTTVGEAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVRAD- 115
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
P +V+I+EYV +A FF EPKF+NAVLD ++R+ +
Sbjct: 116 TPPKVVINEYVDLARAFFPDGKEPKFVNAVLDHMAREAK 154
>gi|296284343|ref|ZP_06862341.1| transcription termination factor [Citromicrobium bathyomarinum
JL354]
Length = 153
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + + S R ARLAAVQALYQ D+ G +++ E+ +R + E
Sbjct: 1 MSGNNTR-----STARSAARLAAVQALYQQDMEGTKLPKLLDEFHQHRLGREIEG---DT 52
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y ++ +F I+ GV R++ IDL +S L + WS RLD + +LR G ELI
Sbjct: 53 YADAEVPFFDDIVRGVDARREEIDLQLSEKLAQGWSLKRLDKTMLQVLRCGTYELIARAD 112
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P +ISEYV +A FF E KF N VLD V++
Sbjct: 113 IPTGAVISEYVDVAKAFFDDREAKFANGVLDAVAKAVR 150
>gi|294010264|ref|YP_003543724.1| N utilization substance protein B [Sphingobium japonicum UT26S]
gi|292673594|dbj|BAI95112.1| N utilization substance protein B [Sphingobium japonicum UT26S]
Length = 148
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F +
Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPLHLLLHEFHQHRLGATIE---DVTYAQAEESFFDDV 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R++ ID LI + L++ WS RLD + ILRAG EL+ V ISEYV
Sbjct: 62 VQGVDRRREEIDALIVARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+AH F+ E F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAKDVR 147
>gi|257095841|ref|YP_003169482.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257048365|gb|ACV37553.1| NusB antitermination factor [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 164
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 13/154 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + R AR A+QALYQ + G I + + D E
Sbjct: 12 RPASVRSPRRRAREFALQALYQWQLSGNDEAAIEAHL-----------GDSEGFDKADRE 60
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+F ++ GV+ +++ + + + L F L + +L AG EL P VII
Sbjct: 61 FFAGLLRGVLAQRRTLQEQLQAFLDR--PFGELSPVEACVLLAGAFELNNHPQTPYGVII 118
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E V +A F D K++N VLDK++ +
Sbjct: 119 NESVELAKGFGGTDGHKYVNGVLDKLAARLRPAE 152
>gi|85704976|ref|ZP_01036076.1| transcription antitermination factor NusB [Roseovarius sp. 217]
gi|85670298|gb|EAQ25159.1| transcription antitermination factor NusB [Roseovarius sp. 217]
Length = 160
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + ARL AVQAL+Q++ G ++ + E+ +RF A+ + V+
Sbjct: 1 MTTDPALSGNRKRQMKSAARLYAVQALFQMEHSGQTSDVVREEFLDFRFGAEVDEGVD-- 58
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D++ FR ++ ++ + ID + L KW +R+D L ++ RA EL+E
Sbjct: 59 MAEGDVDLFRKLLDDAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVESD- 117
Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIK 160
P +V+I EYV +A F+ G E KF+NAVLD ++R+ +
Sbjct: 118 TPPKVVIMEYVDVAKAFYPAGKESKFVNAVLDHMAREARPE 158
>gi|237809261|ref|YP_002893701.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
gi|259514913|sp|C4LAE0|NUSB_TOLAT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|237501522|gb|ACQ94115.1| NusB antitermination factor [Tolumonas auensis DSM 9187]
Length = 138
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR A+QA+YQ + + +I+ +++ +E VDL +F
Sbjct: 1 MKPAE-RRKARHLALQAIYQWQLAKDNVADIVEQFK-----------LEQPTKGVDLPYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++ GV++ ++D S L+ LD I +LR EL C VP +V+I+E
Sbjct: 49 ELLLTGVVNNVTNLDATFSPFLSR--KLDDLDQIDKGVLRLACYELTYCKDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ +A F D KF+N VLDKV ++
Sbjct: 107 AIELAKAFATDDSHKFVNGVLDKVVKQ 133
>gi|254511391|ref|ZP_05123458.1| transcription antitermination factor NusB [Rhodobacteraceae
bacterium KLH11]
gi|221535102|gb|EEE38090.1| transcription antitermination factor NusB [Rhodobacteraceae
bacterium KLH11]
Length = 160
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT D K + + ARL AVQAL+Q++ G +T +++E+ +RF A E
Sbjct: 1 MTKTDAPKPANQKRQMKSAARLYAVQALFQMEQSGQTTEAVVTEFLDHRFGAVYEG---E 57
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
L D+ FR ++ ++ + ID + L KW +R+D L ++ RA EL +
Sbjct: 58 EMLDGDISVFRALVDNAVNYQAPIDQMTDRALVAKWPIARIDPTLRAVFRAAGAELTQSD 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V +A FF EPKF+NAVLD ++R+ + +
Sbjct: 118 -TPPKVVITEFVDVARAFFPEGKEPKFVNAVLDHMAREAQPE 158
>gi|330505151|ref|YP_004382020.1| transcription antitermination protein NusB [Pseudomonas mendocina
NK-01]
gi|328919437|gb|AEB60268.1| transcription antitermination protein NusB [Pseudomonas mendocina
NK-01]
Length = 159
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 1 MTIQDNKKDLKLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
M+ N + K R AR A+QALY I G EI +++
Sbjct: 1 MSNSGNGQPAKKGPSGKILARREARTLAMQALYSWHIAGQPLNEIEAQF----------- 49
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
V++ + VD +F I+HGV +K +D + L +D + +ILR EL
Sbjct: 50 RVDNDFSKVDGAYFHEILHGVPRQKTELDGAFTPLLDR--PLEEIDPVELAILRLSTYEL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +V+I+E + +A F D KF+N +LDK++
Sbjct: 108 KNRVDVPYKVVINEGIELAKVFGATDGHKFVNGILDKLAPTLRAAE 153
>gi|307293552|ref|ZP_07573396.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
gi|306879703|gb|EFN10920.1| NusB antitermination factor [Sphingobium chlorophenolicum L-1]
Length = 148
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F +
Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPIHLLLHEFHQHRLGATIE---DVTYAQAEESFFDDV 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R++ ID LI++ L++ WS RLD + ILRAG EL+ V ISEYV
Sbjct: 62 VQGVDRRREEIDALIAARLSKGWSLERLDKPMRQILRAGTYELLARKDVATGTAISEYVD 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+AH F+ E F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDAVAKDVR 147
>gi|126738747|ref|ZP_01754443.1| transcription antitermination factor NusB [Roseobacter sp.
SK209-2-6]
gi|126719928|gb|EBA16635.1| transcription antitermination factor NusB [Roseobacter sp.
SK209-2-6]
Length = 160
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 1 MTIQDNKKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT + + + +RL AVQAL+Q++ G + +II E+E +RF A + D
Sbjct: 1 MTQSGSAPKGSGKRQMKSASRLYAVQALFQMEQSGQTFDQIIVEFEDHRFGAVYDGDE-- 58
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + FR ++ ++ + +D + L KW +R+D L ++ RA EL +
Sbjct: 59 -MAEGDTKLFRKLVEDAVNYQAPVDQMTDRALVAKWPIARIDPTLRALFRAAGAELTQSE 117
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V IA FF E KF+N VLD ++R+ + +
Sbjct: 118 -TPPKVVINEFVDIARAFFPEGKESKFVNGVLDHMAREAKPE 158
>gi|167623143|ref|YP_001673437.1| transcription antitermination protein NusB [Shewanella halifaxensis
HAW-EB4]
gi|189035905|sp|B0TJZ1|NUSB_SHEHH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|167353165|gb|ABZ75778.1| NusB antitermination factor [Shewanella halifaxensis HAW-EB4]
Length = 135
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQDVAGVDIAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +K +D LI+ LT +D + +I+R EL VP +V I+E
Sbjct: 49 RELLGGVATKKSQLDELITPFLTR--PLDEVDPVEKAIVRIATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRKE 157
+ +A F D KF+N +LDK V+R
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLVARNR 135
>gi|241761517|ref|ZP_04759604.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|283856498|ref|YP_163287.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
gi|241373825|gb|EER63358.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|283775502|gb|AAV90176.2| NusB antitermination factor [Zymomonas mobilis subsp. mobilis ZM4]
Length = 157
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q K+ K + R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y
Sbjct: 3 QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ +F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP
Sbjct: 58 AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ISEY+ +A+ F+ E F+N +LD V++K +
Sbjct: 118 ATVISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157
>gi|298529745|ref|ZP_07017148.1| NusB antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511181|gb|EFI35084.1| NusB antitermination factor [Desulfonatronospira thiodismutans
ASO3-1]
Length = 157
Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +K K +H R R A Q LY + + T I+ + ++ DT +
Sbjct: 1 MTR--HKPRTKTTHSRHAQREFAFQVLYSLHF-DQTGTHILDTFHHFKNDQDTAVQQ--- 54
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ + +I+GV + + +D I ++ W R+ M+ +I+R V E+I
Sbjct: 55 ----DMSYALQLINGVRENLEELDAAIGRH-SQNWKVKRIAMVELTIMRLAVYEMIYRED 109
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+PV+V I+E + +A F + F+N +LD V+R G +
Sbjct: 110 IPVKVGINEAIELAKTFGDNNSRNFVNGILDAVARDMRHGEPGTDAG 156
>gi|260753881|ref|YP_003226774.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|258553244|gb|ACV76190.1| NusB antitermination factor [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 157
Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q K+ K + R ARLAAVQALYQ ++ ++ E+ YR A E ++ Y
Sbjct: 3 QTQKRPHK--NARSAARLAAVQALYQREMEKTPLNILLDEFHQYRLGATIE---DATYTK 57
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ +F I+ GV R + ID +IS L+E+WS RLD + ILRAG EL+ VP
Sbjct: 58 AEPSFFDDIVRGVGTRCEEIDRVISENLSERWSLDRLDRPMRQILRAGTYELLARPDVPT 117
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
IISEY+ +A+ F+ E F+N +LD V++K +
Sbjct: 118 ATIISEYIDVANAFYDRQEKNFVNGLLDTVAKKLRSSNNA 157
>gi|301156187|emb|CBW15658.1| transcription antitermination protein [Haemophilus parainfluenzae
T3T1]
Length = 145
Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + K+ +K R AR AVQALY + G + ++ + V+
Sbjct: 1 MTEKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
VD +F + + +D +S L + LD I +ILR V EL VP
Sbjct: 50 GVDKPYFSRLFRQTVANVDSVDFSMSHYLDR--TLDELDPIEKAILRLAVYELQFEPDVP 107
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+V I+E + +A F + K+IN VLDKV+
Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139
>gi|85707944|ref|ZP_01039010.1| transcription termination factor [Erythrobacter sp. NAP1]
gi|85689478|gb|EAQ29481.1| transcription termination factor [Erythrobacter sp. NAP1]
Length = 155
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--ADTELDVESVYLHVDLEWFR 70
S R ARLAAVQALYQ + G + +++ E+ +R D E VY ++E+F
Sbjct: 7 SQARSTARLAAVQALYQQQMEGTALNKLLDEFHQHRLGREVDDEDHEGEVYADAEVEFFD 66
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I+ GV R+ ID ++++ L + W+ RLD + ILRAG ELI VP I+EY
Sbjct: 67 DIVRGVDARRDEIDEILTARLAQGWTLMRLDKTMLQILRAGAYELIARADVPRASAITEY 126
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A FF E KF+N +LD V+++
Sbjct: 127 VDVAKAFFDDREAKFVNGILDAVAKEAR 154
>gi|104779852|ref|YP_606350.1| transcription antitermination protein NusB [Pseudomonas entomophila
L48]
gi|123079269|sp|Q1IFL9|NUSB_PSEE4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|95108839|emb|CAK13535.1| transcription termination, L factor (N utilization substance
protein B) [Pseudomonas entomophila L48]
Length = 166
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S E+ +++ V++ + VD +
Sbjct: 21 KPSKSAKRREARKLATQALYQWHMAKHSLNEVEAQF-----------RVDNDFSDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV +K ID + CL LD + S+LR E + VP V+I+
Sbjct: 70 FREILHGVPAKKVEIDEALKPCLDT--PLEELDPVELSVLRLSAWEFMMRADVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E V +A F D KF+N VLDK++ +
Sbjct: 128 EGVELAKVFGATDGHKFVNGVLDKLAPRLREAE 160
>gi|260425570|ref|ZP_05779550.1| transcription antitermination factor NusB [Citreicella sp. SE45]
gi|260423510|gb|EEX16760.1| transcription antitermination factor NusB [Citreicella sp. SE45]
Length = 163
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
MT D L + +R +RL AVQALYQ++ G S + +E+ +RF A+ E V
Sbjct: 1 MTNPDTPPALSGNQKRRMKSASRLYAVQALYQMEAAGQSVERVQNEFVDHRFGAEIEEGV 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E L D+ F I ++ + ID + L KW +R+D L ++ RA E ++
Sbjct: 61 E--MLDGDVGLFGRITSAAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFVD 118
Query: 118 CHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P V+ISEYV +A FF EP+F+NAVLD ++R+ + +
Sbjct: 119 SD-TPPRVVISEYVDVARAFFPEGREPQFVNAVLDHMAREAKPE 161
>gi|71279330|ref|YP_268274.1| transcription termination/antitermination factor NusB [Colwellia
psychrerythraea 34H]
gi|119390761|sp|Q485J1|NUSB_COLP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71145070|gb|AAZ25543.1| transcription termination/antitermination factor NusB [Colwellia
psychrerythraea 34H]
Length = 138
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + +I + ++ D+E+F
Sbjct: 1 MKPS-PRRKARELAVQAVYSWQVSKNPVNDIEVNFIA-----------DNSKRRFDIEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++++ GV ID I + +D + +ILR V EL +C VP V+I+E
Sbjct: 49 QLLLRGVTTNIGSIDEAIIPYVDR--PLDDIDQVEKAILRVAVFELKDCTDVPYRVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F D KF+N VLDK + +
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKTVKLIRPQE 138
>gi|86137878|ref|ZP_01056454.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
gi|85825470|gb|EAQ45669.1| transcription antitermination factor NusB [Roseobacter sp. MED193]
Length = 160
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 1 MTIQDN-KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT D+ K + + ARL AVQAL+Q++ + ++I+E+E +RF A + +
Sbjct: 1 MTHSDSAPKGNGKTQMKSAARLYAVQALFQMEHSDLTFDKVIAEFENHRFGA---VYEDG 57
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D FR ++ ++ + ID + L KW +R+D L ++ RA E +
Sbjct: 58 EMAEGDTGLFRKLLKDAVNFQAPIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFTQS- 116
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
+ P +V+I+E+V IA FF E KF+NAVLD ++R+ +
Sbjct: 117 NTPPKVVINEFVDIARAFFPEGKEAKFVNAVLDHMAREAK 156
>gi|254787582|ref|YP_003075011.1| transcription antitermination protein NusB [Teredinibacter turnerae
T7901]
gi|259514910|sp|C5BS84|NUSB_TERTT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|237683677|gb|ACR10941.1| putative transcription antitermination factor NusB [Teredinibacter
turnerae T7901]
Length = 147
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 12/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QA+YQ + G I +E+ ++ VD E+F + HG
Sbjct: 8 RSRARHFAMQAIYQWQMNGNPLHVIEAEF-----------HTDNDMSKVDTEYFHELFHG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V K +D L +LD + ++LR EL VP +V+I+E V +A
Sbjct: 57 VAADKSALDACFLPHLKSL-PLEKLDPVTLALLRQATFELKNRVDVPYKVVINEAVNLAK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D KF+N VLDKV+
Sbjct: 116 KFGAEDSHKFVNGVLDKVAADLRALE 141
>gi|77164321|ref|YP_342846.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
gi|119390790|sp|Q3JCY0|NUSB_NITOC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|76882635|gb|ABA57316.1| NusB antitermination factor [Nitrosococcus oceani ATCC 19707]
Length = 148
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S+RR AR AA+Q LYQ ++G +I E+ +D +F+
Sbjct: 1 MSNRRSKARTAALQGLYQWQLMGQDVDKIDIEFIV------------QDIRGIDHAYFQE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV R+ +D + L + +D + C+ILR G EL+ +P V+++E +
Sbjct: 49 LLRGVPQRQGELDECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F +++N +LDKV++K
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRATE 136
>gi|296115207|ref|ZP_06833848.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
gi|295978308|gb|EFG85045.1| NusB antitermination factor [Gluconacetobacter hansenii ATCC 23769]
Length = 183
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 4/169 (2%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF--CADTELDVES 59
+KD R +R+ AVQAL+QI+ G + ++S++ +R + E
Sbjct: 9 PDDTPRKDRN--RSRTASRVGAVQALFQIEQGGDNAENVVSQFTHHRLPTGKTSLGYAEG 66
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D+ F I+ G + R+ ID +++ L W RLD +L ++LRA EL
Sbjct: 67 QVPDADIRLFTAIVRGSVARQADIDAMVADVLPASWPMDRLDPVLRALLRAAGGELTAQD 126
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
P VII+EY+ +AH FF GDEP+ +N VLD +SR+ + + +
Sbjct: 127 PAPSRVIINEYMDVAHGFFSGDEPRMLNGVLDAMSRRIAGTEAAPATPV 175
>gi|94496077|ref|ZP_01302655.1| NusB antitermination factor [Sphingomonas sp. SKA58]
gi|94424256|gb|EAT09279.1| NusB antitermination factor [Sphingomonas sp. SKA58]
Length = 148
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R ARLAAVQALYQ+++ G ++ E+ +R A E + Y + +F I
Sbjct: 5 SKSRSAARLAAVQALYQLEMEGTPLASLLHEFHQHRLGATIE---DVTYAQAEESFFDDI 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R+ ID L+++ L+ WS RLD + ILRAG EL+ V +ISEYV
Sbjct: 62 VTGVDKRRAEIDALVAARLSSGWSMDRLDKPMRQILRAGTYELLARKDVGTGTVISEYVD 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+AH F+ E F+N +LD V++
Sbjct: 122 VAHAFYDKREAGFVNGLLDGVAKDVR 147
>gi|30250477|ref|NP_842547.1| antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
gi|39931886|sp|Q82S07|NUSB_NITEU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|30139318|emb|CAD86470.1| Antitermination protein NusB [Nitrosomonas europaea ATCC 19718]
Length = 167
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+RR ++R A+Q +YQ + G + +I + + F + D +F +
Sbjct: 20 KNRRRLSRELALQGIYQWQVTGGNARDIGMQLQQVSF-----------FSKADGPYFSDL 68
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ + I L + + L + CSIL G E++ +P II+E +
Sbjct: 69 LQGVLEHAADLQTQIQPHLDRQ--IAELSPVECSILLIGTYEMVYRPEIPCRAIINEAIE 126
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + D K++N VLDK++ +
Sbjct: 127 LAKSYGGTDGHKYVNGVLDKLATRLRAVE 155
>gi|330812010|ref|YP_004356472.1| transcription antitermination protein NusB [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380118|gb|AEA71468.1| transcription antitermination protein NusB [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 166
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + VD +
Sbjct: 21 KPSKSVKRREARQLATQALYQWHMAKQSLNEIEAQF-----------RVDNDFSDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID ++ CL + LD + ++LR EL++ VP V+I+
Sbjct: 70 FREILHGVPQFKTEIDTALTPCLDL--TIEELDPVELAVLRLSTWELLKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E + +A F D KF+N VLDK++ +
Sbjct: 128 EGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE 160
>gi|260575720|ref|ZP_05843717.1| NusB antitermination factor [Rhodobacter sp. SW2]
gi|259022118|gb|EEW25417.1| NusB antitermination factor [Rhodobacter sp. SW2]
Length = 157
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + K D K + ARL AVQAL+Q+++ G + + E+ET+RF A + D
Sbjct: 1 MSDKVPKPDKKQM--KSAARLYAVQALFQMEVSGQTVEAVQREFETHRFGAVYDGDE--- 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ FR ++ ++ + ID L L KW SR+D +L ++ RA E++E
Sbjct: 56 MAEGDVVHFRALVGHAVNWQAKIDQLTDRALVAKWPISRIDPVLRALFRAAGAEMLEMP- 114
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V +A FF E F+NAVLD ++R+ + +
Sbjct: 115 TPPKVVITEFVDVAKAFFPEGKEASFVNAVLDHMAREAKPE 155
>gi|114767590|ref|ZP_01446325.1| transcription antitermination factor NusB [Pelagibaca bermudensis
HTCC2601]
gi|114540368|gb|EAU43457.1| transcription antitermination factor NusB [Roseovarius sp.
HTCC2601]
Length = 163
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 1 MTIQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
MT D L + +R +RL AVQALYQ++ + ++ E+ YRF A+ + V
Sbjct: 1 MTTPDTPPALSGNQKRRMKSASRLYAVQALYQMEAGDVAVEKVQREFVDYRFGAEIDEGV 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E + D+ F I ++ + ID + L KW +R+D L ++ RA EL++
Sbjct: 61 E--MVEGDVTLFGKITSSAVNWQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVD 118
Query: 118 CHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+ISEYV +A FF EP+F+NAVLD ++R+ +
Sbjct: 119 SD-TPPKVVISEYVEVASAFFPEGREPRFVNAVLDHMAREARPE 161
>gi|300114881|ref|YP_003761456.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
gi|299540818|gb|ADJ29135.1| NusB antitermination factor [Nitrosococcus watsonii C-113]
Length = 148
Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S+RR AR AA+Q LYQ + G +I E+ +D +F+
Sbjct: 1 MSNRRSKARTAALQGLYQWQLTGQDVDKIDIEFIV------------QDIRGIDHAYFQA 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV R+ +D + L +D + C+ILR G EL+ +P V+++E +
Sbjct: 49 LLQGVPQRQWELDECLGPFLDR--PIHEIDPVECAILRIGAFELLCRPEIPYRVVLNEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F +++N +LDKV++K
Sbjct: 107 ELAKRFGAEHGHRYVNGILDKVAQKVRATE 136
>gi|325578284|ref|ZP_08148419.1| transcription termination/antitermination factor NusB [Haemophilus
parainfluenzae ATCC 33392]
gi|325160020|gb|EGC72149.1| transcription termination/antitermination factor NusB [Haemophilus
parainfluenzae ATCC 33392]
Length = 145
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ D K+ +K R AR AVQALY + G + ++ + V+
Sbjct: 1 MTDKKEPVKKVSPRRRARECAVQALYSWALSGNAPEQVELTFV-----------VDQDLK 49
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
VD +F + + + +D +S L LD I +ILR V EL VP
Sbjct: 50 GVDKPYFSRLFRQTVANVEAVDFSMSHYLDRA--LDELDPIERAILRLAVYELQFEPDVP 107
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+V I+E + +A F + K+IN VLDKV+
Sbjct: 108 YKVAINEAIEVAKVFGADESHKYINGVLDKVA 139
>gi|149916259|ref|ZP_01904780.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
gi|149809919|gb|EDM69770.1| transcription antitermination factor NusB [Roseobacter sp. AzwK-3b]
Length = 168
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ ++ + R AR AVQAL+Q+++ + +I E+E +RF A + E +
Sbjct: 19 NQRRKM-----RSAARFYAVQALFQMEVSQQTVDAVIREFEDHRFGAHYD---EGDMVEG 70
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D F ++ ++ + ID + L KW +R+D L ++ RA E+ + P +
Sbjct: 71 DPVLFGQLMRDAVNWQASIDQMTDRALVAKWPIARIDPTLRALFRAAGAEMTQSD-TPPK 129
Query: 125 VIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
V+I E+V IA F+ E F+NAVLD ++R+ +
Sbjct: 130 VVIMEFVDIAKSFYPEGKESSFVNAVLDHMAREARPE 166
>gi|294678589|ref|YP_003579204.1| transcription antitermination factor NusB [Rhodobacter capsulatus
SB 1003]
gi|294477409|gb|ADE86797.1| transcription antitermination factor NusB [Rhodobacter capsulatus
SB 1003]
Length = 165
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 1 MTIQDNKKDLKLS-----HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
MT K K S R ARL AVQAL+Q++ G + E+E++RF T+
Sbjct: 1 MTDTTPDKPRKPSPEEKRRMRSAARLYAVQALFQMEAAGQGVDRVAREFESFRFGMVTDE 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
E D + FR ++ + + ID L W R+D +L ++ RA E+
Sbjct: 61 GEE--LAEGDYDLFRRLLDDAVMWQAKIDQTTDRALVATWPIERIDPVLRALFRAAGAEM 118
Query: 116 IECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
+ + P++V+I+E+V +A FF E KF+NAVLD ++R+ +
Sbjct: 119 VN-PATPIKVVINEFVEVARAFFPEGKETKFVNAVLDHMAREVRPE 163
>gi|163750010|ref|ZP_02157254.1| transcription antitermination protein NusB [Shewanella benthica
KT99]
gi|161330284|gb|EDQ01265.1| transcription antitermination protein NusB [Shewanella benthica
KT99]
Length = 134
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E +D+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + G + ID LI + F+ + I +ILR EL VP +V I+E
Sbjct: 49 RELFTGTTTKSAQIDELIIPH--VERPFAEVSPIEKAILRMATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D KF+N +LDK+
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIV 131
>gi|120598061|ref|YP_962635.1| transcription antitermination protein NusB [Shewanella sp. W3-18-1]
gi|166215720|sp|A1RHD6|NUSB_SHESW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|120558154|gb|ABM24081.1| NusB antitermination factor [Shewanella sp. W3-18-1]
Length = 134
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + GV +K +D LI + + + +I+R EL VP +V I+E
Sbjct: 49 RELFSGVATKKPQLDELIIPH--LERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
+ +A F + KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134
>gi|70732819|ref|YP_262586.1| transcription antitermination protein NusB [Pseudomonas fluorescens
Pf-5]
gi|119390798|sp|Q4K597|NUSB_PSEF5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|68347118|gb|AAY94724.1| N utilization substance protein B [Pseudomonas fluorescens Pf-5]
Length = 166
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + +D +
Sbjct: 21 KPSKSAKRREARQLATQALYQWHMAKHSLNEIEAQF-----------RVDNDFTDIDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID + CL LD + ++LR EL++ VP V+I+
Sbjct: 70 FREILHGVPANKNEIDTALVPCLDLA--IDELDPVELAVLRLSTWELLKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E + +A F D KF+N VLDK++ +
Sbjct: 128 EGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE 160
>gi|269103251|ref|ZP_06155948.1| transcription termination protein NusB [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163149|gb|EEZ41645.1| transcription termination protein NusB [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 152
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
+K + R AR AVQA+Y I +I + + + E E+ L D+
Sbjct: 1 MKPAA-RRNARQFAVQAIYSWQITQGDIADIEQHFLSGDKFEEEEYQAEAPVLAAPHTDV 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+FR + GV+ Q +D + L+ LD + ++LR + E+++ VP +V+
Sbjct: 60 NYFRDLFTGVVLNHQDLDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVV 117
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+E + +A F D KF+N VLDK + +
Sbjct: 118 INEAIELAKLFGAEDSHKFVNGVLDKAAPSLRKDK 152
>gi|254475988|ref|ZP_05089374.1| transcription antitermination factor NusB [Ruegeria sp. R11]
gi|214030231|gb|EEB71066.1| transcription antitermination factor NusB [Ruegeria sp. R11]
Length = 163
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT D++ K R +RL AVQAL+Q++ + +I E+E +RF A +
Sbjct: 1 MTTSDSQGAAPKGNDKHKMRSASRLYAVQALFQMEHSNLTLDRVIVEFEDFRFGA---VY 57
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ D + FR ++ + + ID + L KW R+D L ++ RA EL
Sbjct: 58 EDGEMAEGDSKVFRKLVEDAVSHQARIDQMTDRALVAKWPIGRIDPTLRALFRAAGAELT 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
E P +V+I+E+V IA FF EPKF+NAVLD ++R+ + +
Sbjct: 118 ESK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMAREAKPE 161
>gi|89055903|ref|YP_511354.1| NusB antitermination factor [Jannaschia sp. CCS1]
gi|88865452|gb|ABD56329.1| NusB antitermination factor [Jannaschia sp. CCS1]
Length = 165
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/167 (34%), Positives = 87/167 (52%), Gaps = 11/167 (6%)
Query: 1 MTIQDNKKDLKLSHR------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M+ + K R R ARL AVQAL+Q++ S E+ E+ET+RF A E
Sbjct: 1 MSDETPSKKRNGPSRDEKRQMRSAARLYAVQALFQMEHSNQSLDEVRQEFETHRFGAVYE 60
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D D FR + G ++R+ ID + L KW R+D L ++ RA E
Sbjct: 61 GDE---LAEGDPNLFRRTLEGAVERQALIDQMTDRALVAKWPIDRIDPTLRALFRAAGAE 117
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
L+E + P +V+I+E+V +A FF E KF+NAVLD ++R+ + +
Sbjct: 118 LVE-GTAPPKVVITEFVDVARAFFPEGKEAKFVNAVLDHMAREAKPE 163
>gi|114332465|ref|YP_748687.1| NusB antitermination factor [Nitrosomonas eutropha C91]
gi|122312909|sp|Q0AD60|NUSB_NITEC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114309479|gb|ABI60722.1| NusB antitermination factor [Nitrosomonas eutropha C91]
Length = 167
Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 1 MTIQDNKKDLKLS-------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
M D K + +RR ++R A+Q +YQ + G + EI D
Sbjct: 1 MIPTDTAPPSKPAQGHKGYKNRRRLSRELALQGIYQWRLAGGNAQEI-----------DL 49
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+L + Y D +F ++ GV++ + ++ I + L + + L + CSIL G
Sbjct: 50 QLQQVNFYSKADGSYFSDLLQGVLEHSRDLEAQIQAYLDRQ--LAELSPVECSILLIGTY 107
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E++ +P II+E + +A + D K++N VLDK++ +
Sbjct: 108 EMVHHPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLAAQLRAVE 155
>gi|126175357|ref|YP_001051506.1| transcription antitermination protein NusB [Shewanella baltica
OS155]
gi|146293868|ref|YP_001184292.1| transcription antitermination protein NusB [Shewanella putrefaciens
CN-32]
gi|153001667|ref|YP_001367348.1| transcription antitermination protein NusB [Shewanella baltica
OS185]
gi|160876405|ref|YP_001555721.1| transcription antitermination protein NusB [Shewanella baltica
OS195]
gi|217972400|ref|YP_002357151.1| transcription antitermination protein NusB [Shewanella baltica
OS223]
gi|304410187|ref|ZP_07391806.1| NusB antitermination factor [Shewanella baltica OS183]
gi|307302102|ref|ZP_07581860.1| NusB antitermination factor [Shewanella baltica BA175]
gi|166215715|sp|A3D7C4|NUSB_SHEB5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215716|sp|A6WR46|NUSB_SHEB8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215718|sp|A4Y960|NUSB_SHEPC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035904|sp|A9KYJ0|NUSB_SHEB9 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772654|sp|B8E6W7|NUSB_SHEB2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|125998562|gb|ABN62637.1| NusB antitermination factor [Shewanella baltica OS155]
gi|145565558|gb|ABP76493.1| NusB antitermination factor [Shewanella putrefaciens CN-32]
gi|151366285|gb|ABS09285.1| NusB antitermination factor [Shewanella baltica OS185]
gi|160861927|gb|ABX50461.1| NusB antitermination factor [Shewanella baltica OS195]
gi|217497535|gb|ACK45728.1| NusB antitermination factor [Shewanella baltica OS223]
gi|304351596|gb|EFM15995.1| NusB antitermination factor [Shewanella baltica OS183]
gi|306914140|gb|EFN44561.1| NusB antitermination factor [Shewanella baltica BA175]
gi|315268595|gb|ADT95448.1| NusB antitermination factor [Shewanella baltica OS678]
gi|319427240|gb|ADV55314.1| NusB antitermination factor [Shewanella putrefaciens 200]
Length = 134
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + GV +K +D LI + + + +I+R EL VP +V I+E
Sbjct: 49 RELFSGVATKKTQLDELIIPH--LERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
+ +A F + KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134
>gi|77464330|ref|YP_353834.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
gi|77388748|gb|ABA79933.1| NusB antitermination factor [Rhodobacter sphaeroides 2.4.1]
Length = 155
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 10/159 (6%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ +++ +K +RL AVQAL+Q++ G + ++ E+ET+RF A E D
Sbjct: 1 MKPDRRQMK-----SASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MA 52
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + FR I+ G ++R+ ID + L KW R+D ++ ++ RA EL+E P
Sbjct: 53 EGDAKSFRAIVSGAVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESE-TP 111
Query: 123 VEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
+V+I+E+V IA FF EPKF+NAVLD ++R+ +
Sbjct: 112 PKVVINEFVDIAKAFFPEGREPKFVNAVLDHMAREARPE 150
>gi|294141965|ref|YP_003557943.1| N utilization substance protein B [Shewanella violacea DSS12]
gi|293328434|dbj|BAJ03165.1| N utilization substance protein B [Shewanella violacea DSS12]
Length = 134
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E +D+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + G + ID LI + F+ + I +ILR EL VP +V I+E
Sbjct: 49 RELFTGTATKHAQIDELIIPH--VERPFNEVSPIEKAILRMATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D KF+N +LDK+
Sbjct: 107 AIELAKTFGAEDGHKFVNGILDKIV 131
>gi|307546178|ref|YP_003898657.1| transcription antitermination protein NusB [Halomonas elongata DSM
2581]
gi|307218202|emb|CBV43472.1| transcription antitermination protein NusB [Halomonas elongata DSM
2581]
Length = 166
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 4/158 (2%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--ESVYLH 63
++ + R AR AVQ LYQ ++ G S + +E+ D E V
Sbjct: 5 EREPSRAQQSRRAARELAVQGLYQWEMTGKSVATVEAEFRGQVADEDLEDHENWHKVMEL 64
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
DL F ++ GV + ID ++ L LD I +ILR G EL VP
Sbjct: 65 ADLALFHELLSGVAQHCEKIDEQLAPVLDR--RLEDLDAIELAILRLGTYELAYRLEVPY 122
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+I+E V +A F + +++N +LDK++ +
Sbjct: 123 RAVINEGVELAKSFGATEGHRYVNGILDKLAARLRAAE 160
>gi|170725747|ref|YP_001759773.1| transcription antitermination protein NusB [Shewanella woodyi ATCC
51908]
gi|238688678|sp|B1KJK5|NUSB_SHEWM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169811094|gb|ACA85678.1| NusB antitermination factor [Shewanella woodyi ATCC 51908]
Length = 134
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E +D+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVTYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ G ++ ID LI+ + + + + I ++LR EL VP +V I+E
Sbjct: 49 RELLSGTATKQAQIDELITPHI--ERPYDEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIV 131
>gi|328954274|ref|YP_004371608.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
gi|328454598|gb|AEB10427.1| NusB antitermination factor [Desulfobacca acetoxidans DSM 11109]
Length = 142
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 12 LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+S + +AR A+Q LYQI+I G + + + + +F
Sbjct: 1 MSRPGKSLARERALQCLYQIEITGREVEGAAALFWEHFHSE-----------ERNSAYFH 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + +D IS ++ W R+ + +ILR + EL+ C VP +V+++E
Sbjct: 50 RLVAGVRGHCEELDAYISRF-SQHWRLERMASVDRNILRLAIFELLHCPEVPPKVVVNEA 108
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V + F + FIN +LD + + R
Sbjct: 109 VELGKRFGAENSGAFINGILDSFLKARQPDR 139
>gi|209964638|ref|YP_002297553.1| transcription antitermination protein NusB, putative
[Rhodospirillum centenum SW]
gi|209958104|gb|ACI98740.1| transcription antitermination protein NusB, putative
[Rhodospirillum centenum SW]
Length = 179
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 78/140 (55%), Gaps = 3/140 (2%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
VQALYQI++ G + I E+ +R + + Y+ D + F I+ GVM R+ +
Sbjct: 37 VQALYQIELGGTPSETAIGEFVRHRLGQEIDG---DRYVSADPQLFADIVRGVMARQADV 93
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D L++ L +W R++ IL +ILRAG EL+ V ++I++Y+ + H FF G EP
Sbjct: 94 DQLVTGVLDRQWGLDRMEPILRAILRAGAWELLGNTGVAPHIVINDYIDVGHAFFAGREP 153
Query: 144 KFINAVLDKVSRKEEIKRSG 163
+N VLD+++R+ +
Sbjct: 154 GMVNGVLDRIARQLRPEEMA 173
>gi|229592845|ref|YP_002874964.1| transcription antitermination protein NusB [Pseudomonas fluorescens
SBW25]
gi|259514879|sp|C3K2R8|NUSB_PSEFS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229364711|emb|CAY52674.1| putative N utilisation-related protein [Pseudomonas fluorescens
SBW25]
Length = 166
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ +R AR A QALYQ I G S EI +++ V++ + DL +
Sbjct: 21 KPSKNEKRRAARQLATQALYQRQIAGASLNEIEAQF-----------RVDNDFTFADLPY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F I+HGV ID ++ CL + LD + ++R EL+ VP V+I+
Sbjct: 70 FHDILHGVHAHLTEIDAALAPCLDL--TIDELDPVELCVMRLSAWELLYRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E + +A + D KF+N VLDK++ +
Sbjct: 128 EGIELAKVYGSTDGHKFVNGVLDKLAPRLREAE 160
>gi|146281225|ref|YP_001171378.1| transcription antitermination protein NusB [Pseudomonas stutzeri
A1501]
gi|166215709|sp|A4VHT5|NUSB_PSEU5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145569430|gb|ABP78536.1| NusB protein [Pseudomonas stutzeri A1501]
gi|327479379|gb|AEA82689.1| transcription antitermination protein NusB [Pseudomonas stutzeri
DSM 4166]
Length = 161
Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +AR A+QALYQ + G S EI +++ V++ + VD +F +++G
Sbjct: 23 RRVARSLAMQALYQWHMAGQSLNEIEAQF-----------RVDNDFSGVDGAYFHELLNG 71
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V +K +D I+ L LD + +ILR EL++ VP V+I+E + +A
Sbjct: 72 VARKKTEVDQAIAPNLDR--PLDELDPVELAILRLSTYELMQRIDVPYRVVINEGIELAK 129
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D KF+N VLDK++
Sbjct: 130 VYGATDGHKFVNGVLDKLAPSLRSAE 155
>gi|312963299|ref|ZP_07777782.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
gi|311282379|gb|EFQ60977.1| N utilization substance protein B [Pseudomonas fluorescens WH6]
Length = 166
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + G S EI +++ V++ + D +
Sbjct: 21 KPSKSEKRRAARQLATQALYQRHMAGTSLNEIEAQF-----------RVDNDFTFADQSY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F I+HGV ID ++ CL + LD + ++LR EL++ VP V+I+
Sbjct: 70 FHDILHGVPANLTEIDAALTPCLDL--TLEELDPVELAVLRLSTWELLKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E + +A + D KF+N VLDK++ +
Sbjct: 128 EGIELAKVYGSTDGHKFVNGVLDKLAPRLREAE 160
>gi|163733974|ref|ZP_02141415.1| N utilization substance protein B-like protein, putative
[Roseobacter litoralis Och 149]
gi|161392510|gb|EDQ16838.1| N utilization substance protein B-like protein, putative
[Roseobacter litoralis Och 149]
Length = 160
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ ++ +K ARL AVQAL+Q++ G + + E+ +RF E L
Sbjct: 11 NQRRKMK-----SAARLYAVQALFQMEHSGQTIEIVRREFLEHRFG---ETYDGQEMLDG 62
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D++ F +I G ++ + ID + L KW R+D L ++ RA EL P +
Sbjct: 63 DVDLFDTVIEGAVNFQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKD-TPPK 121
Query: 125 VIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
V+ISEYV +A FF EPK +N VLD ++R+
Sbjct: 122 VVISEYVDVARAFFEDGKEPKLVNGVLDHMAREAR 156
>gi|212634192|ref|YP_002310717.1| transcription antitermination protein NusB [Shewanella
piezotolerans WP3]
gi|226738906|sp|B8CJN3|NUSB_SHEPW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|212555676|gb|ACJ28130.1| Antitermination protein NusB [Shewanella piezotolerans WP3]
Length = 135
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQNVDGVDIAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +K +D LI+ +D + +I+R EL VP +V I+E
Sbjct: 49 RELLGGVATKKSQLDELITPF--LVRPMDEVDPVEKAIVRLAAYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKLV 131
>gi|332703471|ref|ZP_08423559.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
Bay]
gi|332553620|gb|EGJ50664.1| NusB antitermination factor [Desulfovibrio africanus str. Walvis
Bay]
Length = 161
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 7/161 (4%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
K R AR A Q LY I+ S + + Y + ++ +
Sbjct: 4 KKKSARRFAREKAFQVLYGIEFTDSSHLGAVRDAFVEY-----PRPERQTKLDEKSDTFA 58
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ G + K +D +I ++ W +R+ + +ILR G+ E++ +P++V I+E
Sbjct: 59 WELVKGTWESKAELDGIIGRF-SQNWKVTRIAKVDLTILRLGMFEILHRPDIPLKVAINE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V +A +F F+N +LD +R + G +
Sbjct: 118 AVELAKEFGDEHSRNFVNGILDAAARAVDTGEIGTRPPQAK 158
>gi|332559221|ref|ZP_08413543.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
gi|332276933|gb|EGJ22248.1| NusB antitermination factor [Rhodobacter sphaeroides WS8N]
Length = 148
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 85/146 (58%), Gaps = 5/146 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ +RL AVQAL+Q++ G + ++ E+ET+RF A E D D + FR I+ G
Sbjct: 2 KSASRLYAVQALFQMETTGQTVEQVAREFETHRFGAVYEGDE---MAEGDAKSFRAIVSG 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++R+ ID + L KW R+D ++ ++ RA EL+E P +V+I+E+V IA
Sbjct: 59 AVNRQAGIDQMTDRALVAKWPIDRIDPVIRALFRAAGSELLESE-TPPKVVINEFVDIAK 117
Query: 136 DFFYG-DEPKFINAVLDKVSRKEEIK 160
FF EPKF+NAVLD ++R+ +
Sbjct: 118 AFFPEGREPKFVNAVLDHMAREARPE 143
>gi|127512123|ref|YP_001093320.1| transcription antitermination protein NusB [Shewanella loihica
PV-4]
gi|166215717|sp|A3QC63|NUSB_SHELP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|126637418|gb|ABO23061.1| NusB antitermination factor [Shewanella loihica PV-4]
Length = 134
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQKIDGVDVSYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ G + +D LI + F + I ++LR EL VP +V I+E
Sbjct: 49 RELLSGTTTKSAQLDELIMPH--LERPFDEVSPIEKAVLRIATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ +A F D KF+N +LDK+ K+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIVAKK 134
>gi|120553778|ref|YP_958129.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
gi|166215695|sp|A1TYX3|NUSB_MARAV RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|120323627|gb|ABM17942.1| NusB antitermination factor [Marinobacter aquaeolei VT8]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 13/161 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+ Q K + R AR A+Q LYQ ++I +E+ V++
Sbjct: 8 SPQPGKTGQPKAGDRRRARALAMQGLYQRHFSKTPISDIEAEF-----------MVDNDM 56
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
VD+ +FR ++ GV + +D L+ L +D + +I+R G EL V
Sbjct: 57 SKVDIMYFRDLLRGVHREQAELDKLLEPFLDR--PLKEVDPVELAIVRLGAYELKHRIDV 114
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P +V+I+E + +A F + KF+N++LDK+SR+ + +
Sbjct: 115 PYKVVINEGIEMAKRFGGTEGHKFVNSILDKLSRRLRLAET 155
>gi|26987256|ref|NP_742681.1| transcription antitermination protein NusB [Pseudomonas putida
KT2440]
gi|148545803|ref|YP_001265905.1| transcription antitermination protein NusB [Pseudomonas putida F1]
gi|167031580|ref|YP_001666811.1| transcription antitermination protein NusB [Pseudomonas putida
GB-1]
gi|32171603|sp|Q88QH5|NUSB_PSEPK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215708|sp|A5VXW1|NUSB_PSEP1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035897|sp|B0KL71|NUSB_PSEPG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|24981898|gb|AAN66145.1|AE016242_13 N utilization substance protein B [Pseudomonas putida KT2440]
gi|148509861|gb|ABQ76721.1| NusB antitermination factor [Pseudomonas putida F1]
gi|166858068|gb|ABY96475.1| NusB antitermination factor [Pseudomonas putida GB-1]
gi|313496885|gb|ADR58251.1| NusB [Pseudomonas putida BIRD-1]
Length = 166
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + VD +
Sbjct: 21 KPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQF-----------RVDNDFTDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID + C+T LD + ++LR ELI+ VP V+I+
Sbjct: 70 FREILHGVPAIKGEIDKALVPCMTIA--LEELDPVELAVLRLSTWELIKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
E V +A F D KF+N VLDK++ R+ E+K
Sbjct: 128 EGVELAKVFGATDGHKFVNGVLDKLAPALREAEVK 162
>gi|90406964|ref|ZP_01215155.1| N utilization substance protein B [Psychromonas sp. CNPT3]
gi|90312006|gb|EAS40100.1| N utilization substance protein B [Psychromonas sp. CNPT3]
Length = 139
Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + RR AR AVQA+YQ I +II ++ V+ + D+ +F
Sbjct: 1 MKPAERRR-ARQFAVQAVYQWQITKGPVGQIIEQF-----------SVDQDFSKTDVPYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ ++ GV+ R + ID +S L+ +DM+ +ILR + EL VP +V+++E
Sbjct: 49 KELLAGVVSRIETIDEKLSPYLSR--KIGDVDMVDIAILRLAMFELSYRTDVPHKVVLNE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A DF + KF+N VLDK R +++
Sbjct: 107 AIELAKDFATDESYKFVNGVLDKALRSLKLR 137
>gi|299067743|emb|CBJ38952.1| antitermination factor (N utilization substance B) (transcriptional
antiterminator) [Ralstonia solanacearum CMR15]
Length = 155
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLK--LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++ K R AR A+Q LYQ + + +
Sbjct: 1 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHL-----------HDA 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V +A F + K++N VLDK++ + +
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAEEVAA 153
>gi|88801237|ref|ZP_01116776.1| transcription antitermination protein NusB [Reinekea sp. MED297]
gi|88776023|gb|EAR07259.1| transcription antitermination protein NusB [Reinekea sp. MED297]
Length = 151
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QALYQ + S T+I +E+ T ++ D ++F ++ G
Sbjct: 11 RRKARRLAMQALYQWHVADQSVTQIEAEFLT-----------DNDVSKFDKDYFSEVLRG 59
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V K +D + + L + +ILR G E + VP +VII+E V ++
Sbjct: 60 VAASKSELDSHVDKHIDRA--LKDLTPVELAILRMGAYEFLHRIDVPYKVIINEGVELSK 117
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F + +F+N VLDK+++
Sbjct: 118 TFGANEAHRFVNGVLDKLAQDLRSPE 143
>gi|325276599|ref|ZP_08142341.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
gi|324098278|gb|EGB96382.1| transcription antitermination protein NusB [Pseudomonas sp. TJI-51]
Length = 166
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 16/155 (10%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + VD +
Sbjct: 21 KPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQF-----------RVDNDFTDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID ++ C+T LD + ++LR ELI+ VP V+I+
Sbjct: 70 FREILHGVPAVKDEIDKALAPCMTIA--LDELDPVELAVLRLSTWELIKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
E V +A F D KF+N VLDK++ R+ E+K
Sbjct: 128 EGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162
>gi|110679100|ref|YP_682107.1| N utilization substance protein B-like protein, putative
[Roseobacter denitrificans OCh 114]
gi|109455216|gb|ABG31421.1| N utilization substance protein B-like protein, putative
[Roseobacter denitrificans OCh 114]
Length = 145
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 5/144 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ ARL AVQAL+Q++ G + + E+ +RF E L D++ F +I G
Sbjct: 2 KSAARLYAVQALFQMEHSGQTIEAVRREFLDHRFG---ETYDGQEMLDGDVDLFGAVIEG 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID + L KW R+D L ++ RA EL P +V+ISEYV +A
Sbjct: 59 AVNYQAPIDQMTDRALVAKWPLGRIDPTLRALFRAAGAELNGKD-TPPKVVISEYVDVAR 117
Query: 136 DFFYG-DEPKFINAVLDKVSRKEE 158
FF EPK +N VLD ++R+
Sbjct: 118 AFFEDGKEPKLVNGVLDHMAREAR 141
>gi|330830919|ref|YP_004393871.1| N utilization substance protein B [Aeromonas veronii B565]
gi|328806055|gb|AEB51254.1| N utilization substance protein B [Aeromonas veronii B565]
Length = 137
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A QA+YQ + + +I +++ ++ VDL +F
Sbjct: 1 MKPSE-RRKARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E
Sbjct: 49 RDLLFGVALHCSELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A F D KF+N VLDKV + +
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIKSLNKR 137
>gi|77461236|ref|YP_350743.1| transcription antitermination protein NusB [Pseudomonas fluorescens
Pf0-1]
gi|119390800|sp|Q3K652|NUSB_PSEPF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|77385239|gb|ABA76752.1| N utilization substance protein B [Pseudomonas fluorescens Pf0-1]
Length = 166
Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + VD +
Sbjct: 21 KPSKSAKRREARQLATQALYQWHMARQSLNEIEAQF-----------RVDNDFTDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID ++ CL LD + ++LR EL++ VP V+I+
Sbjct: 70 FREILHGVPQFKTEIDNALTPCLDLA--IEELDPVELAVLRLSTWELLKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E + +A F D KF+N VLDK++ +
Sbjct: 128 EGIELAKVFGSTDGHKFVNGVLDKLAPRLREAE 160
>gi|170719757|ref|YP_001747445.1| transcription antitermination protein NusB [Pseudomonas putida
W619]
gi|229620367|sp|B1J3F6|NUSB_PSEPW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169757760|gb|ACA71076.1| NusB antitermination factor [Pseudomonas putida W619]
Length = 166
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 16/155 (10%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
S +R AR A QALYQ + S EI +++ V++ + VD +
Sbjct: 21 KPSKSAKRREARKLATQALYQWHMAQHSLNEIEAQF-----------RVDNDFTDVDGAY 69
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
FR I+HGV K ID + C+ LD + ++LR E I+ VP V+I+
Sbjct: 70 FREILHGVPAIKSEIDSALKPCMDIA--LEELDPVELAVLRLSTWEFIKRVDVPYRVVIN 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS---RKEEIK 160
E V +A F D KF+N VLDK++ R+ E+K
Sbjct: 128 EGVELAKVFGATDGHKFVNGVLDKLAPSLREAEVK 162
>gi|126727899|ref|ZP_01743727.1| transcription antitermination factor NusB [Rhodobacterales
bacterium HTCC2150]
gi|126702840|gb|EBA01945.1| transcription antitermination factor NusB [Rhodobacterales
bacterium HTCC2150]
Length = 155
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT+ N+ + + AR AVQAL+Q++ G ++ISE+E +RF A + D
Sbjct: 1 MTVSGNQ----MRKMKSAARFFAVQALFQLEHSGQEVDKVISEFEEHRFGATFDGDE--- 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D F +++ G ++ + ID + L KW R+D L ++ RA EL E
Sbjct: 54 MQEGDPATFGLLMRGAVNLQAKIDQMTDRALVVKWPLGRIDPTLRALFRAAGAELTEGE- 112
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V +A FF EPKF+N VLD ++R+ +
Sbjct: 113 TPPKVVINEFVEVARAFFPETKEPKFVNGVLDHMAREARPE 153
>gi|254488295|ref|ZP_05101500.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
gi|214045164|gb|EEB85802.1| transcription antitermination factor NusB [Roseobacter sp. GAI101]
Length = 159
Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 5/161 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + +RL AVQAL+Q++ S + +E+ +RF A +
Sbjct: 1 MTSTAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRTEFLEHRFGATYDGAE--- 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+ F ++ ++ + ID + L KW +R+D L ++ RA EL
Sbjct: 58 MIDGDIRHFADVLETAVNYQAAIDQMTDRALVAKWPIARIDPTLRALFRAAGAELR-DTG 116
Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
P +V+I+EYV +A FF DEPKF+NAVLD ++R+ +
Sbjct: 117 TPPKVVITEYVDVARAFFEGSDEPKFVNAVLDHMAREARPE 157
>gi|253576317|ref|ZP_04853647.1| transcription antitermination factor NusB [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844210|gb|EES72228.1| transcription antitermination factor NusB [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 149
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR AVQ++YQ+++ E ++ T + E +VE + + +++
Sbjct: 2 KRRLAREIAVQSMYQMEMNEVDANEAVTMLLTEA-MEENEGEVELSDVDATRAFALELVN 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G RK ID L+ L W SRL + +LR E+I VP +V ++E + +A
Sbjct: 61 GTWSRKDAIDSLLEDYLKG-WQISRLSKVDRQVLRLATYEMIFRDDVPGKVAVNEAIELA 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KF+N VL K+ + + ++
Sbjct: 120 KHFGSPESGKFVNGVLGKMIQDIDQLKN 147
>gi|117620704|ref|YP_857817.1| transcription antitermination factor NusB [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|254772605|sp|A0KNG6|NUSB_AERHH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|117562111|gb|ABK39059.1| transcription antitermination factor NusB [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 137
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A QA+YQ + + +I +++ ++ VDL +F
Sbjct: 1 MKPSE-RRKARHCATQAIYQWQMTKANVGDIEEQFK-----------IDQDTKGVDLNYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +D + + L+ +DM+ +ILR EL VP V I+E
Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A F D KF+N VLDKV + +
Sbjct: 107 AIELAKSFAADDSHKFVNGVLDKVIKSLNKR 137
>gi|68249964|ref|YP_249076.1| transcription antitermination protein NusB [Haemophilus influenzae
86-028NP]
gi|81335612|sp|Q4QKN1|NUSB_HAEI8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|68058163|gb|AAX88416.1| N utilization substance protein B [Haemophilus influenzae 86-028NP]
Length = 144
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTVENIETVDFSISPYIDRA--FDELDPIETAILRLAVYELCFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|22095947|sp|Q8Y1H9|NUSB_RALSO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 155
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLK--LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++ K R AR A+Q LYQ + + +
Sbjct: 1 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHL-----------HDA 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V +A F + K++N VLDK++ +
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 153
>gi|16759395|ref|NP_455012.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29142833|ref|NP_806175.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|213027238|ref|ZP_03341685.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163226|ref|ZP_03348936.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213418053|ref|ZP_03351130.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213579887|ref|ZP_03361713.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213615893|ref|ZP_03371719.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213650170|ref|ZP_03380223.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855378|ref|ZP_03383618.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|289804986|ref|ZP_06535615.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289825061|ref|ZP_06544413.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|22095954|sp|Q8Z8X6|NUSB_SALTI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|25299803|pir||AB0554 N utilization substance protein B [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16501686|emb|CAD08874.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138465|gb|AAO70035.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 139
Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQALY + ++ ++ E VD+ +F
Sbjct: 1 MKPAA-RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV ++D L+ L+ L + ++LR + EL + VP +V I+E
Sbjct: 49 RELLSGVATNSAYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRSDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F D KF+N VLDK + +
Sbjct: 107 AIELAKTFGAEDSHKFVNGVLDKAAPVIRPNK 138
>gi|24374971|ref|NP_719014.1| transcription antitermination protein NusB [Shewanella oneidensis
MR-1]
gi|32171648|sp|Q8EBP4|NUSB_SHEON RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|24349697|gb|AAN56458.1|AE015783_1 N utilization substance protein B [Shewanella oneidensis MR-1]
Length = 134
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + GV +K +D LI L + + +I+R EL VP +V I+E
Sbjct: 49 RELFAGVATKKTQLDELIIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
+ +A F + KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134
>gi|56461241|ref|YP_156522.1| transcription termination factor NusB [Idiomarina loihiensis L2TR]
gi|81599971|sp|Q5QVE5|NUSB_IDILO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|56180251|gb|AAV82973.1| Transcription termination factor NusB [Idiomarina loihiensis L2TR]
Length = 139
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQA+Y + S ++I +++ T E+ VD+++F
Sbjct: 1 MKPAA-RRKARKLAVQAIYSWQLSQNSFSDIEAQFLT-----------ENDTSKVDVDYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV + +D + L LD I ++LR EL E VP +V I+E
Sbjct: 49 LELVRGVGGHYRTLDEALEPFLDR--PIKELDPIELAVLRLAAYELRERVDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +A F + +F+N VLDK R
Sbjct: 107 AIELAKSFGADESHRFVNGVLDKAVDTFRPTRQ 139
>gi|145636230|ref|ZP_01791900.1| transcription antitermination protein NusB [Haemophilus influenzae
PittHH]
gi|145641684|ref|ZP_01797261.1| transcription antitermination protein NusB [Haemophilus influenzae
R3021]
gi|145270752|gb|EDK10685.1| transcription antitermination protein NusB [Haemophilus influenzae
PittHH]
gi|145273731|gb|EDK13600.1| transcription antitermination protein NusB [Haemophilus influenzae
22.4-21]
Length = 144
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + +F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELHFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|323144126|ref|ZP_08078765.1| transcription antitermination factor NusB [Succinatimonas hippei
YIT 12066]
gi|322416103|gb|EFY06798.1| transcription antitermination factor NusB [Succinatimonas hippei
YIT 12066]
Length = 143
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + + R AR A+QA+YQ + G S EI ++ +
Sbjct: 1 MDSTEGAVSPAM---RHKARHFAMQAIYQWQMTGQSAGEIERQFLE-----------DQP 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL++ +I GV+ +HID + L+ LD + +ILR G EL+
Sbjct: 47 IQGADLDYMHDLISGVVANFEHIDEVYEPFLSR--PLKDLDQVDKAILRLGTFELLYRQE 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+P V+I+E + +A +F D KF+N VLDKV R
Sbjct: 105 IPFRVVINESIMLAKEFAEQDSHKFVNGVLDKVVR 139
>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
Length = 422
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R IAR A++ALYQ+D++G I E+ ++ ++ ++
Sbjct: 1 MRNRTIARELAIKALYQLDLLGDKAETEIDEF-----------CRQNAEKPDIYKFALLL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID I S E W R+ +I +ILR GV EL+ +P +V I+E +
Sbjct: 50 VTGCRSHVKEIDERI-SLSAENWDLHRMAVIDKNILRLGVYELLYRDDIPPKVSINEAIE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D F+N +LDKV
Sbjct: 109 LAKKFGDKDSGMFVNGILDKVY 130
>gi|163738657|ref|ZP_02146071.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
gi|163742958|ref|ZP_02150341.1| putative N utilization substance protein B [Phaeobacter
gallaeciensis 2.10]
gi|161383641|gb|EDQ08027.1| putative N utilization substance protein B [Phaeobacter
gallaeciensis 2.10]
gi|161387985|gb|EDQ12340.1| NusB antitermination factor [Phaeobacter gallaeciensis BS107]
Length = 163
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 86/161 (53%), Gaps = 9/161 (5%)
Query: 1 MTIQDN----KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT D+ +K + +RL AVQAL+Q++ + ++I E+E +RF A + D
Sbjct: 1 MTTSDSQGAARKGSDKHKMKSASRLYAVQALFQMEHSNLTFDKVIVEFEDHRFGAVYDGD 60
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
D + FR +I G ++ + ID + L KW +R+D L ++ RA E +
Sbjct: 61 E---MAEGDTKSFRKLIEGAVNEQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFL 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRK 156
P +V+I+E+V IA FF EPKF+NAVLD ++R+
Sbjct: 118 AGK-TPPKVVINEFVDIARAFFPEGKEPKFVNAVLDHMARE 157
>gi|83746193|ref|ZP_00943247.1| N utilization substance protein B [Ralstonia solanacearum UW551]
gi|207728164|ref|YP_002256558.1| n utilization substance protein b [Ralstonia solanacearum MolK2]
gi|207744100|ref|YP_002260492.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
solanacearum IPO1609]
gi|300704874|ref|YP_003746477.1| antitermination factor [Ralstonia solanacearum CFBP2957]
gi|83727159|gb|EAP74283.1| N utilization substance protein B [Ralstonia solanacearum UW551]
gi|206591409|emb|CAQ57021.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
solanacearum MolK2]
gi|206595504|emb|CAQ62431.1| n utilization substance protein b homolog (protein nusb) [Ralstonia
solanacearum IPO1609]
gi|299072538|emb|CBJ43888.1| antitermination factor (N utilization substance B) (transcriptional
antiterminator) [Ralstonia solanacearum CFBP2957]
Length = 155
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 1 MTIQDN--KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++ K R AR A+Q LYQ + + +
Sbjct: 1 MTQDNSPAKPKAAPKSARRRARELALQGLYQWLLNRNDPGVVEAHL-----------HDA 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V +A F + K++N VLDK++ +
Sbjct: 108 IDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 153
>gi|302189354|ref|ZP_07266027.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. syringae 642]
Length = 165
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G S EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVATNKTEIDTALSPCLDL--TIEELDPVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|92114700|ref|YP_574628.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
gi|119390757|sp|Q1QUC9|NUSB_CHRSD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91797790|gb|ABE59929.1| NusB antitermination factor [Chromohalobacter salexigens DSM 3043]
Length = 166
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV--E 58
M+ Q ++ R AR AVQ LYQ + G S T + SE+ D E
Sbjct: 1 MS-QTPREATPAQQSRRAARELAVQGLYQWQMTGKSITAVESEFRAQIADEDLEDHENWH 59
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
V DL F ++H V ++ ID I+ L LD I +ILR G EL
Sbjct: 60 KVMGIADLALFHELLHNVAADREAIDKTIAPLLDR--RLEDLDRIELAILRLGAYELKYR 117
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VP +I+E + +A F D K++N +LDK++ +
Sbjct: 118 LEVPYRAVINEGIELAKAFGATDGHKYVNGILDKLASRLRSAEVAA 163
>gi|291613126|ref|YP_003523283.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
gi|291583238|gb|ADE10896.1| NusB antitermination factor [Sideroxydans lithotrophicus ES-1]
Length = 150
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 15/164 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + K R AR A+Q +Y+ + G + I + E
Sbjct: 1 MSDAKHSNPAKSM--RHRARELAMQGVYEWRLSGKNAKLI-----------ENGTRDEKS 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+F +++G + + + I+ L L + S+L G ELI
Sbjct: 48 LGRYDTEFFGQLLNGAIAHHEALSAQIAPHLDR--KLDELSPVEYSVLLLGAYELIHHPE 105
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VP V+I+E V +A F D KF+N VLDK++ +
Sbjct: 106 VPYRVVINEAVELAKTFGGSDGHKFVNGVLDKLAAEVRATEVAA 149
>gi|251796318|ref|YP_003011049.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
gi|247543944|gb|ACT00963.1| NusB antitermination factor [Paenibacillus sp. JDR-2]
Length = 153
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR AV +LYQ+++ + E + + E++ E V + R +++
Sbjct: 2 KRRLAREIAVSSLYQLEMNEVTPMEAVDMLMEEARS-ENEIEAEFVENDQTDNYVRELVN 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K ID + LT W RL + ILR E+ + VP + I+E + +A
Sbjct: 61 GVAENKAAIDERLQHYLTG-WQVDRLSRVDRQILRLAYFEIAYRNDVPPKAAINEAIELA 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
F + KF+N VL K+ ++ E + + S
Sbjct: 120 KHFGTEESGKFVNGVLGKLLKEREGETANSES 151
>gi|240949529|ref|ZP_04753869.1| transcription antitermination protein NusB [Actinobacillus minor
NM305]
gi|257464994|ref|ZP_05629365.1| transcription antitermination protein NusB [Actinobacillus minor
202]
gi|240296102|gb|EER46763.1| transcription antitermination protein NusB [Actinobacillus minor
NM305]
gi|257450654|gb|EEV24697.1| transcription antitermination protein NusB [Actinobacillus minor
202]
Length = 144
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AVQALY I S EI + T F A+ +D F I
Sbjct: 5 PRRRARECAVQALYSWAISQNSVEEIELVFHTDTFAAEDPDTE----GKIDKALFTRIFR 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ID + L +D+I SILR EL P +VII+E + +A
Sbjct: 61 GTVASIDEIDRSLQPFLDRNP--ENVDLIERSILRMAAFELHFEQDTPYKVIINEAIEVA 118
Query: 135 HDFFYGDEPKFINAVLDKVS 154
F D K+IN VLDK++
Sbjct: 119 KAFGSDDSHKYINGVLDKLA 138
>gi|51892987|ref|YP_075678.1| transcription termination factor [Symbiobacterium thermophilum IAM
14863]
gi|81610502|sp|Q67NA9|NUSB_SYMTH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|51856676|dbj|BAD40834.1| transcription termination factor [Symbiobacterium thermophilum IAM
14863]
Length = 153
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+QAL+Q+DI G +++ T D E+ R ++
Sbjct: 2 SRRKARELALQALFQMDIAGTDPDTAVAQALTRETEPDWAP---DRLEEESAEFARRLVR 58
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ D LI+ W R+ + +ILR V E++ VP V ++E V +A
Sbjct: 59 GAWQHREESDRLIAQY-ARGWRVERMAAVDRAILRMAVYEIVHSEDVPDSVAVAEAVELA 117
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D +F+N +L V R
Sbjct: 118 KTFSTADSSRFVNGILGSVIR 138
>gi|90410900|ref|ZP_01218914.1| transcription antitermination protein NusB [Photobacterium
profundum 3TCK]
gi|90328113|gb|EAS44424.1| transcription antitermination protein NusB [Photobacterium
profundum 3TCK]
Length = 155
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVI 72
R AR A+QA+Y I + EI ++ + + E ++ L DL +F +
Sbjct: 10 RRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPSLAAPHTDLNYFHDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ Q +D + L+ LD + ++LR + E+ + VP +V+I+E +
Sbjct: 70 LNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKRDDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A F D KF+N VLDK + K
Sbjct: 128 LAKLFGAEDSHKFVNGVLDKAAPTLRKK 155
>gi|89067938|ref|ZP_01155382.1| transcription antitermination factor NusB [Oceanicola granulosus
HTCC2516]
gi|89046536|gb|EAR52592.1| transcription antitermination factor NusB [Oceanicola granulosus
HTCC2516]
Length = 156
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + K+ R +RL AVQAL+Q++ S +++E+E +RF A E
Sbjct: 1 MTTISGNQRRKM---RSASRLYAVQALFQMEAAQQSVDRVMAEFEDHRFGA---SYEEGE 54
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DLE FR + +D + ID + L KW +R+D L ++ RA E I
Sbjct: 55 MAEGDLETFRALCETAVDNQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAEFIRRD- 113
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+I+E+V IA FF EP F+NAVLD ++R+ +
Sbjct: 114 TPPKVVITEFVDIARAFFPEGREPSFVNAVLDHMAREARPE 154
>gi|17545430|ref|NP_518832.1| transcription antitermination protein NusB [Ralstonia solanacearum
GMI1000]
gi|17427722|emb|CAD14241.1| probable n utilization substance b homolog (protein nusb).
transcription regulator [Ralstonia solanacearum GMI1000]
Length = 161
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLK--LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++ K R AR A+Q LYQ + + +
Sbjct: 7 MTQDNSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHL-----------HDA 55
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 56 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 113
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V +A F + K++N VLDK++ +
Sbjct: 114 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 159
>gi|330899661|gb|EGH31080.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. japonica str. M301072PT]
gi|330943563|gb|EGH45900.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. pisi str. 1704B]
gi|330976725|gb|EGH76766.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 165
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G S EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E
Sbjct: 56 -RVDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLDL--TIEELDPVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|300692261|ref|YP_003753256.1| antitermination factor (N utilization substance B) (transcriptional
antiterminator) [Ralstonia solanacearum PSI07]
gi|299079321|emb|CBJ51993.1| antitermination factor (N utilization substance B) (transcriptional
antiterminator) [Ralstonia solanacearum PSI07]
Length = 155
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLK--LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT + K R AR A+Q LYQ + + +
Sbjct: 1 MTQDTSPAKPKAPPKSARRRARELALQGLYQWLLNRNDPGVVEAHL-----------HDA 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREEATLTESFTPFLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V +A F + K++N VLDK++ +
Sbjct: 108 VDIPYKVVINEAVELAKTFGGVEGYKYVNGVLDKLAAQVRAAEVAA 153
>gi|157374416|ref|YP_001473016.1| transcription antitermination protein NusB [Shewanella sediminis
HAW-EB3]
gi|189035907|sp|A8FSR5|NUSB_SHESH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157316790|gb|ABV35888.1| NusB antitermination factor [Shewanella sediminis HAW-EB3]
Length = 134
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E +D+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQKIDGIDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ G ++ ID I + + ++ + I ++LR EL VP +V I+E
Sbjct: 49 RELLSGTATKQAQIDEQIIPHI--ERPYNEVSPIEKAVLRLATYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D KF+N +LDK+
Sbjct: 107 AIELAKAFGAEDGHKFVNGILDKIV 131
>gi|313901605|ref|ZP_07835044.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
13965]
gi|313468135|gb|EFR63610.1| NusB antitermination factor [Thermaerobacter subterraneus DSM
13965]
Length = 214
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+Q L+Q + G + E L + + G
Sbjct: 13 RRRGREIALQVLFQWEAAGHPLEAGLQW-----------AAGEYNPGEEVLAFAADLAGG 61
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCI 133
V + ID LI+ W RL + +ILR G+ EL+ VP V I+E V +
Sbjct: 62 VTRHRLDIDGLIARY-ARDWDLERLARVDRNILRLGIYELLYAGRPDVPPPVAINEAVEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A + D +FIN +L +++R
Sbjct: 121 AKRYSSEDAARFINGILGQLARDR 144
>gi|237747092|ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS]
gi|229378443|gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS]
Length = 159
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 17/165 (10%)
Query: 1 MTIQDNKK----DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT NK K R +R A+Q LY+ + II
Sbjct: 1 MTFMKNKSVHANPSKNRSPRHRSREFALQGLYEWLLNKDDAPVIIEHIRQ---------- 50
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ D F ++ G + + + + I + S L + +IL G EL
Sbjct: 51 -AHGFDKADTGHFVTLVSGTIHQAETLRSEIVPHIDR--SLDELSPVEHAILLLGAYELK 107
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P V+I+E V + F D KF+N VLDK++ K
Sbjct: 108 NHIEIPYRVVINEAVELTKSFGGIDGHKFVNGVLDKIAAKLRPAE 152
>gi|229847453|ref|ZP_04467550.1| transcription antitermination protein NusB [Haemophilus influenzae
7P49H1]
gi|229809594|gb|EEP45321.1| transcription antitermination protein NusB [Haemophilus influenzae
7P49H1]
Length = 144
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + +F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|126733189|ref|ZP_01748936.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
gi|126716055|gb|EBA12919.1| putative N utilization substance protein B [Roseobacter sp. CCS2]
Length = 159
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT+ +NKK K+ + ARL AVQAL+Q++ G + ++ E+E +R A + E
Sbjct: 1 MTLSNNKKR-KM---KSAARLYAVQALFQMEASGQTVDQVTREFEDHRLGAVYD---EGE 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D++ FR ++ +D + ID L L KW +R+D ++ RA EL
Sbjct: 54 MTEGDVDTFRALMEKAVDDQAAIDQLTDRALVAKWPIARIDPTWRALFRAAGAELTLQD- 112
Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIK 160
P +V+ISE+V +A F G EPKF+NAVLD ++R+ + +
Sbjct: 113 TPPKVVISEFVSVAEAFSADGKEPKFVNAVLDHMAREAQPE 153
>gi|90579826|ref|ZP_01235634.1| transcription antitermination protein NusB [Vibrio angustum S14]
gi|330445271|ref|ZP_08308923.1| transcription antitermination factor NusB [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|90438711|gb|EAS63894.1| transcription antitermination protein NusB [Vibrio angustum S14]
gi|328489462|dbj|GAA03420.1| transcription antitermination factor NusB [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 156
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVI 72
R AR AVQA+Y + + +I + + + E ++ L D+ +FR +
Sbjct: 10 RRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ Q +D + L+ LD + ++LR + E+++ VP +V+I+E +
Sbjct: 70 FTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F D KF+N VLDK + ++
Sbjct: 128 LAKLFGAEDSHKFVNGVLDKAAPTLRKEK 156
>gi|262274775|ref|ZP_06052586.1| transcription termination protein NusB [Grimontia hollisae CIP
101886]
gi|262221338|gb|EEY72652.1| transcription termination protein NusB [Grimontia hollisae CIP
101886]
Length = 151
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 6/146 (4%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDL 66
+K + R AR A+QA+Y + + +I +++ Y + D+
Sbjct: 1 MKPAA-RRNARHFALQAIYSWQLTKDNVADIEAQFLAADNYEEEEHQAEEPRLRQPETDV 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
E+FR ++ GV+ Q +D + L+ LD + +ILR + EL + VP +V+
Sbjct: 60 EYFRDLLSGVVLNYQELDSKMRPYLSR--PLQDLDEMEHAILRLSMYELCKREDVPYKVV 117
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDK 152
I+E + +A F D KF+N VLDK
Sbjct: 118 INEAIELAKRFGAEDSHKFVNGVLDK 143
>gi|288941488|ref|YP_003443728.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
gi|288896860|gb|ADC62696.1| NusB antitermination factor [Allochromatium vinosum DSM 180]
Length = 171
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +N + + R +R A ALYQ + G I D +
Sbjct: 1 MTTPENPRPISP---RSQSRRYAALALYQWRLTGDDPMAIKRHLLDDPKWLDAVAASLNG 57
Query: 61 YLHVDL-----------EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
D E +++GV ID + L S++D + +ILR
Sbjct: 58 VSDEDELAAEDRFNFNVELLDELLNGVPTHIDAIDAQLDRFLDR--PISQVDPVELAILR 115
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
G E++ ++P V I+E V + + K++N VLDK++R++
Sbjct: 116 LGAYEILFSDNIPDRVAINEAVELTKLLGAHEGHKYVNGVLDKIARRK 163
>gi|116748821|ref|YP_845508.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
gi|166215725|sp|A0LI21|NUSB_SYNFM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116697885|gb|ABK17073.1| NusB antitermination factor [Syntrophobacter fumaroxidans MPOB]
Length = 151
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RR +R A+Q LYQ+++ E + Y + D + + I
Sbjct: 1 MGRRRRSREMALQVLYQMEMAVLPPEEALGLYYQLF-----DDDEKHRVPAEVRPFAEEI 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID +I+S +E W +R+ ++ +ILR V E++ C +P +V I+E +
Sbjct: 56 VRGVSLHRARIDEMITSA-SEHWRLARMSLVDRNILRIAVFEMLFCFDIPPKVSINEAID 114
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ F D FIN +LD + E
Sbjct: 115 LGKTFGSPDSGAFINGILDHILPLLEAN 142
>gi|302036739|ref|YP_003797061.1| transcription antitermination factor NusB [Candidatus Nitrospira
defluvii]
gi|190343154|gb|ACE75542.1| transcription antitermination protein [Candidatus Nitrospira
defluvii]
gi|300604803|emb|CBK41135.1| Transcription antitermination factor NusB [Candidatus Nitrospira
defluvii]
Length = 157
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AVQ L+Q DI G + + + Y + +
Sbjct: 1 MASRHQARERAVQILFQYDIHGQAGPWLDDFWIQY------------PLAEELRVFAERL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV K+ +D LI W SR+ +I +ILR G EL+ VP +V ++E +
Sbjct: 49 VAGVRANKKELDALIG-TYATNWKVSRMPIIDRNILRMGCFELLHVPEVPAKVTLNEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F + KF+N +LDK+
Sbjct: 108 LAKSFGDEEASKFVNGILDKLL 129
>gi|145634912|ref|ZP_01790619.1| transcription antitermination protein NusB [Haemophilus influenzae
PittAA]
gi|229845118|ref|ZP_04465253.1| transcription antitermination protein NusB [Haemophilus influenzae
6P18H1]
gi|145267778|gb|EDK07775.1| transcription antitermination protein NusB [Haemophilus influenzae
PittAA]
gi|229811954|gb|EEP47648.1| transcription antitermination protein NusB [Haemophilus influenzae
6P18H1]
Length = 144
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTVEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTVENIETVDFSISPYTDRA--FDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|83955701|ref|ZP_00964281.1| transcription antitermination factor NusB [Sulfitobacter sp.
NAS-14.1]
gi|83839995|gb|EAP79171.1| transcription antitermination factor NusB [Sulfitobacter sp.
NAS-14.1]
Length = 159
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + +RL AVQAL+Q++ S + E+ +RF A +
Sbjct: 1 MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGATYDGQE--- 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+ F ++ ++ + ID + L KW+ +R+D L ++ RA EL
Sbjct: 58 MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQE- 116
Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161
P V+I+EYV +A FF GDEPKF+NAVLD ++R+ +
Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158
>gi|260893142|ref|YP_003239239.1| NusB antitermination factor [Ammonifex degensii KC4]
gi|260865283|gb|ACX52389.1| NusB antitermination factor [Ammonifex degensii KC4]
Length = 155
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+ L+Q+D+ G E + + E+ ++
Sbjct: 2 SRRRAREAALMVLFQVDVGGAVPEEALERTLAEW-----------RLGNASREFATSLVL 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID +I +++W R++ + +++R + EL+ +P V I+E V +A
Sbjct: 51 GTLAYRPQIDRVIEEL-SQRWRLERMNRVDRNVMRLALYELLFRQDIPPAVAINEAVELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ + P+F+N +L KV+ + R + +
Sbjct: 110 KRYGGEESPRFVNGILGKVAENLSLYREKVIDPTAE 145
>gi|119774157|ref|YP_926897.1| transcription antitermination protein NusB [Shewanella amazonensis
SB2B]
gi|166215714|sp|A1S4C1|NUSB_SHEAM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119766657|gb|ABL99227.1| NusB antitermination factor [Shewanella amazonensis SB2B]
Length = 134
Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 15/148 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNVADVEHEFLT-----------EQELDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + G + +D + L + + +ILR V EL VP +V+I+E
Sbjct: 49 RELFAGAATKTAQLDEKLKPLLDR--PLEEVSPVEKAILRLAVYELTFRKDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
+ +A F D KF+N +LDK V+R
Sbjct: 107 AIELAKSFGAEDGHKFVNGILDKLVARN 134
>gi|213427852|ref|ZP_03360602.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 139
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR AVQALY + ++ ++ E VD+ +FR ++ G
Sbjct: 6 RHRARECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ++D L+ L+ L + ++LR + EL + VP +V I+E + +A
Sbjct: 55 VATNSAYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D KF+N VLDK + +
Sbjct: 113 TFGAEDSHKFVNGVLDKAAPVIRPNK 138
>gi|95929563|ref|ZP_01312305.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
gi|95134260|gb|EAT15917.1| NusB antitermination factor [Desulfuromonas acetoxidans DSM 684]
Length = 152
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 5/147 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDLEWF-RV 71
R R A++ LY + E++S++ + E + L D+ +F
Sbjct: 6 RRNGREYALKILYSLYDQDAPLDEVLSDFWGNFRFSNDVLGEPEEPQSPLSDDVIFFSEQ 65
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + ID ++ ++ W+ R+ + S++R ELI P V+I+E +
Sbjct: 66 LVKGVYEHLEEIDAMLLDT-SKNWALDRMPRLDLSLMRMACYELIYVDKTPTNVVINEAI 124
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + D P F+N VLD+++++
Sbjct: 125 EIAKRYGTKDTPAFLNGVLDRIAKRAR 151
>gi|254460442|ref|ZP_05073858.1| transcription antitermination factor NusB [Rhodobacterales
bacterium HTCC2083]
gi|206677031|gb|EDZ41518.1| transcription antitermination factor NusB [Rhodobacteraceae
bacterium HTCC2083]
Length = 157
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 13/162 (8%)
Query: 1 MTIQ---DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
M+ + + K+ +K AR AVQALYQ+++ G +T +II E+ +RF A +
Sbjct: 1 MSTELSGNAKRKMK-----SAARFYAVQALYQMEVSGQTTDKIIVEFLDHRFGA---VYE 52
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ ++ D++ F +++ ++ + ID + L KW +R+D L + RA EL+
Sbjct: 53 DMEFVEGDVDLFSSLVNDAVNHQAQIDQMTDRALVAKWPIARIDPTLRGLFRAAGAELVA 112
Query: 118 CHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
P +V+I E+V IA FF E +F+NAVLD V+R+ +
Sbjct: 113 SD-TPPKVVIKEFVDIAAAFFPEGKESRFVNAVLDHVAREAK 153
>gi|302879544|ref|YP_003848108.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
gi|302582333|gb|ADL56344.1| NusB antitermination factor [Gallionella capsiferriformans ES-2]
Length = 157
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K+ R AR A+Q +YQ + G TEI + E D
Sbjct: 11 KNAVQKSPRHRARELALQGVYQWRVSGSDATEIEAHL-----------QGEKNLGRYDKP 59
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++ GV+ ++ + +L++ L L + S+L EL VP +V+I
Sbjct: 60 MYSKLLRGVLANQEELQILLTPYLDRA--LDELSTVEFSVLLLAGFELAHQLDVPYKVVI 117
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+E V +A F D K++N VLDK++ K
Sbjct: 118 NEAVELAKTFGGTDGHKYVNGVLDKLAPKVRAVEFA 153
>gi|261856451|ref|YP_003263734.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
gi|261836920|gb|ACX96687.1| NusB antitermination factor [Halothiobacillus neapolitanus c2]
Length = 196
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR AVQALYQ + + +++ F L VDLE
Sbjct: 53 RKPSPKKRWRWARERAVQALYQQILNHTPVDLLDAQFMEDAF-----------MLKVDLE 101
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
FR I+ GV ++ +D S L + +D I +ILR G ELI +P V I
Sbjct: 102 LFRRIVRGVSANEESLDEAYSPLLDR--PLAEIDPIEQAILRLGAFELIHTPEIPRAVAI 159
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+E V +A + + K+IN VLDK++ + +
Sbjct: 160 NEAVEMAKLYGATESHKYINGVLDKLADRVRLNEP 194
>gi|148826048|ref|YP_001290801.1| transcription antitermination protein NusB [Haemophilus influenzae
PittEE]
gi|166215690|sp|A5UCB7|NUSB_HAEIE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|148716208|gb|ABQ98418.1| transcription antitermination protein NusB [Haemophilus influenzae
PittEE]
gi|309973183|gb|ADO96384.1| Transcription antitermination protein NusB [Haemophilus influenzae
R2846]
Length = 144
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + +F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTIENIETVDFSISPYIDR--TFDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|54307996|ref|YP_129016.1| transcription antitermination protein NusB [Photobacterium
profundum SS9]
gi|81615463|sp|Q6LU11|NUSB_PHOPR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|46912422|emb|CAG19214.1| Putative NusB protein [Photobacterium profundum SS9]
Length = 151
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DL 66
+K + R AR A+QA+Y I + EI ++ + + E ++ L DL
Sbjct: 1 MKPAA-RRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAPILAAPHTDL 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+F +++GV+ Q +D + L+ LD + ++LR + E+ + VP +V+
Sbjct: 60 NYFHDLLNGVVQNHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMTKREDVPYKVV 117
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
I+E + +A F D KF+N VLDK + K
Sbjct: 118 INEAIELAKIFGAEDSHKFVNGVLDKAAPTLRKK 151
>gi|145298021|ref|YP_001140862.1| antitermination protein NusB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|254772606|sp|A4SJP2|NUSB_AERS4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|142850793|gb|ABO89114.1| Antitermination protein NusB [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 137
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 14/146 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A QA+YQ + + +I +++ ++ VDL +F
Sbjct: 1 MKPSE-RRKARHCATQAIYQWQMTRANVGDIEEQFK-----------IDQDTKGVDLNYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +D + + L+ +DM+ +ILR EL VP V+I+E
Sbjct: 49 RDLLFGVALHCNELDKVFAPFLSR--PLEEVDMVDKAILRLATYELTRRDDVPPRVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
+ +A F D KF+N VLDKV +
Sbjct: 107 AIELAKAFAADDSHKFVNGVLDKVIK 132
>gi|89073134|ref|ZP_01159673.1| transcription antitermination protein NusB [Photobacterium sp.
SKA34]
gi|89051087|gb|EAR56544.1| transcription antitermination protein NusB [Photobacterium sp.
SKA34]
Length = 156
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVI 72
R AR AVQA+Y + + +I + + + E ++ L D+ +FR +
Sbjct: 10 RRNARQFAVQAIYSWQLTKGNVADIEQHFLSGDKFEEEEHQADAPVLAAPHTDVSYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ Q +D + L+ LD + ++LR + E+++ VP +V+I+E +
Sbjct: 70 FTGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F D KFIN VLDK + ++
Sbjct: 128 LAKLFGAEDSHKFINGVLDKAAPTLRKEK 156
>gi|119945180|ref|YP_942860.1| NusB antitermination factor [Psychromonas ingrahamii 37]
gi|229620369|sp|A1SUU6|NUSB_PSYIN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119863784|gb|ABM03261.1| NusB antitermination factor [Psychromonas ingrahamii 37]
Length = 145
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 14/154 (9%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+K + RR AR +AVQA+YQ I S +II ++ T + D+
Sbjct: 1 MKMKPAERRR-ARQSAVQAIYQWQITKLSAGQIIEQFST-----------DQDLSKTDVP 48
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+F+ ++ GV+ R +D +S L+ +DM+ ++LR + EL + +P +V++
Sbjct: 49 YFKELLTGVIHRVDFLDEKLSPYLSR--KIEDVDMVDKAVLRLAMFELTQRTDIPHKVVL 106
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E + +A DF + KF+N VLDK R +++
Sbjct: 107 NEAIELAKDFATDESYKFVNGVLDKALRSLKLRE 140
>gi|254452714|ref|ZP_05066151.1| transcription antitermination factor NusB [Octadecabacter
antarcticus 238]
gi|198267120|gb|EDY91390.1| transcription antitermination factor NusB [Octadecabacter
antarcticus 238]
Length = 146
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ +RL AVQAL+Q++ + + E+E +RF A E D D+ FR+++
Sbjct: 2 KSASRLYAVQALFQMEHSSQTIESVTREFEDHRFGAVYEGDE---LAEGDVNLFRMLVET 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID + L KW R+D L ++ RA +ELI P +V ISEYV +A
Sbjct: 59 AVNEQTKIDQMTDRALVAKWPLGRIDPTLRALFRAAGVELIGRD-TPPKVAISEYVDVAK 117
Query: 136 DFF-YGDEPKFINAVLDKVSRKEE 158
FF G+EPKF+NAVLD ++R+ +
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141
>gi|83941142|ref|ZP_00953604.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
gi|83846962|gb|EAP84837.1| transcription antitermination factor NusB [Sulfitobacter sp. EE-36]
Length = 159
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 5/162 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + +RL AVQAL+Q++ S + E+ +RF A +
Sbjct: 1 MTSSAGLSGNQKRKMKSASRLYAVQALFQMEHSSQSFDTVRKEFLEHRFGASYDGQE--- 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+ F ++ ++ + ID + L KW+ +R+D L ++ RA EL
Sbjct: 58 MIDGDIRHFADLLETAVNYQAAIDQMTDRALVAKWAIARIDPTLRALFRAAGAELRAQE- 116
Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEIKR 161
P V+I+EYV +A FF GDEPKF+NAVLD ++R+ +
Sbjct: 117 TPPRVVINEYVDVARAFFEGGDEPKFVNAVLDHMAREARPEE 158
>gi|326386550|ref|ZP_08208172.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
19370]
gi|326208865|gb|EGD59660.1| NusB antitermination factor [Novosphingobium nitrogenifigens DSM
19370]
Length = 148
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARLAAVQALYQ+++ T ++ E+ +R + E + YL D+ +F +
Sbjct: 6 AKARSAARLAAVQALYQLEMEQPELTTLLDEFHRHRLGREIE---DVEYLDADVAFFDDV 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ R+ ID ++ L + WS SRLD + ILRAG EL+ + V +I EY+
Sbjct: 63 VKGVVARRDEIDAKLTERLAQGWSLSRLDKTMLQILRAGTYELLARSDIGVGTVIDEYLD 122
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+AH FF E KF+N +LD +++
Sbjct: 123 VAHAFFDAREAKFVNGLLDALAKDVR 148
>gi|198282617|ref|YP_002218938.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667110|ref|YP_002424808.1| transcription antitermination factor NusB [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247138|gb|ACH82731.1| NusB antitermination factor [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519323|gb|ACK79909.1| transcription antitermination factor NusB [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 147
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K+S RR +AR AAVQALYQ + EI ++ D+ +F
Sbjct: 1 MKIS-RRRLARQAAVQALYQWQMNPGHCAEIELQF----------TSDPERLQGADVAFF 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV +D I+ + ++ + + +ILR EL + P VII+E
Sbjct: 50 KSLWQGVCAAISELDPAIAEEVQDRRWADEVSEVERAILRLAACELRDYPQTPYRVIINE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ + DF +F+NAVLDK++++
Sbjct: 110 AIELDKDFGGEQGHRFVNAVLDKLAQRWRSAEM 142
>gi|149909343|ref|ZP_01897999.1| transcription antitermination protein NusB [Moritella sp. PE36]
gi|149807660|gb|EDM67608.1| transcription antitermination protein NusB [Moritella sp. PE36]
Length = 140
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A QA+YQ + + I ++ T + + D +F
Sbjct: 1 MKPSE-RSKARQFATQAIYQWQMTQETVANIEHQFVT-----------DQDFSGTDATYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV +D L+S L+ + LD++ +ILR EL++ VP +V+I+E
Sbjct: 49 RELVLGVSLNSAELDELMSPFLSR--PLNDLDLVEKAILRLSTFELLKRQDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A DF D KF+N VLDK+ K +++
Sbjct: 107 SIELAKDFGAEDSHKFVNGVLDKIVSKLQLR 137
>gi|219872292|ref|YP_002476667.1| transcription antitermination protein NusB [Haemophilus parasuis
SH0165]
gi|254772642|sp|B8F8R7|NUSB_HAEPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219692496|gb|ACL33719.1| transcription antitermination protein N utilization substance B
(NusB) [Haemophilus parasuis SH0165]
Length = 137
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR AVQALY I S ++ + T + VD+ +FR
Sbjct: 2 KVSPRRRARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYFRK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G ++ ID ++ L + LD I +ILR EL VP +V I+E +
Sbjct: 51 LLRGTVENVDVIDDILRPYLDRADN--ELDPIERTILRLAGYELKFELDVPYKVAINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A F D K++N VLDK++
Sbjct: 109 EVAKVFGSDDSHKYVNGVLDKLA 131
>gi|71737269|ref|YP_276619.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|257483271|ref|ZP_05637312.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tabaci ATCC 11528]
gi|289629163|ref|ZP_06462117.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. aesculi str. NCPPB3681]
gi|289647768|ref|ZP_06479111.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. aesculi str. 2250]
gi|298488893|ref|ZP_07006917.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|119390796|sp|Q48DC2|NUSB_PSE14 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71557822|gb|AAZ37033.1| N utilization substance protein B [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298156568|gb|EFH97664.1| Transcription termination protein NusB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320330417|gb|EFW86396.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330869912|gb|EGH04621.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330874033|gb|EGH08182.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330888050|gb|EGH20711.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. mori str. 301020]
gi|330988217|gb|EGH86320.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. lachrymans str. M301315]
gi|331012494|gb|EGH92550.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tabaci ATCC 11528]
Length = 165
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV K ID +S CL + LD + ++LR E
Sbjct: 56 -RVDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLDL--TIEELDPVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|300022490|ref|YP_003755101.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
gi|299524311|gb|ADJ22780.1| NusB antitermination factor [Hyphomicrobium denitrificans ATCC
51888]
Length = 170
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
VQALYQ+D+ G ++I+E+ R D + + D +F I+ V+ R++ I
Sbjct: 23 VQALYQMDMAGTDLNDVIAEFLNERLSGDN---RDEMLAGADRVFFADILRAVVRRQREI 79
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D +I L W R+D IL +ILR GV EL++ + VP V ISEYV +A FF +EP
Sbjct: 80 DPMIDEQLAVGWRLVRVDSILRAILRGGVAELVDRYDVPARVAISEYVNVARVFFDEEEP 139
Query: 144 KFINAVLDKVSRKEEIKR 161
+ +N VLDK++R+
Sbjct: 140 RVVNGVLDKLARRLRTSE 157
>gi|308048552|ref|YP_003912118.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
gi|307630742|gb|ADN75044.1| NusB antitermination factor [Ferrimonas balearica DSM 9799]
Length = 136
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + +I E+ T E DL +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQMSGNAVADIEHEFLT-----------EQDTKGADLGYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV+ + ++D + L +D + +ILR EL+ VP +V+I+E
Sbjct: 49 RELLVGVVSQSSNLDARLKPNLARL--VEEVDQLELAILRLAAFELLHRDDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F + KF+N VLDK++
Sbjct: 107 AIELAKAFGAEESHKFVNGVLDKLA 131
>gi|94986598|ref|YP_594531.1| transcription termination factor [Lawsonia intracellularis
PHE/MN1-00]
gi|119390780|sp|Q1MS16|NUSB_LAWIP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|94730847|emb|CAJ54209.1| transcription termination factor [Lawsonia intracellularis
PHE/MN1-00]
Length = 161
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 2/155 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDL 66
H R I R A Q LY + + + + + L +
Sbjct: 1 MPANKKHSRRIDRTKAFQVLYSLHFTQINTIETLKEIFLNLPNPLEERNTGIITELDTQI 60
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV +D +I S ++ W RL I ++LR E+ C VP +V
Sbjct: 61 SFSWQLVEGVWRNVTRLDKII-SQFSQNWRVDRLGKIELTLLRIATFEMYYCPDVPPKVS 119
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++E + +A F KFIN +LD + + E ++
Sbjct: 120 LNEALELATCFGDEKARKFINGILDAIIKAIETEK 154
>gi|26522749|dbj|BAC44853.1| NusB protein [Photobacterium phosphoreum]
Length = 157
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVI 72
R AR AVQA+Y + + +I + + + E ++ D+ +FR +
Sbjct: 10 RRNARQFAVQAIYSWQLTKGNVADIEQYFLSGDKFEEEEHQADAPVCKAPDTDVSYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ Q +D + L+ LD + ++LR + E+++ VP +V+I+E +
Sbjct: 70 FAGVVLSHQELDSKMRPYLSR--PLQDLDQMELALLRLAMYEMVKREDVPFKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A F D KF+N VLDK + K
Sbjct: 128 LAKLFGAEDSHKFVNGVLDKAAPSLRKK 155
>gi|270157438|ref|ZP_06186095.1| transcription antitermination factor NusB [Legionella longbeachae
D-4968]
gi|289164170|ref|YP_003454308.1| N utilization substance protein B homolog [Legionella longbeachae
NSW150]
gi|269989463|gb|EEZ95717.1| transcription antitermination factor NusB [Legionella longbeachae
D-4968]
gi|288857343|emb|CBJ11171.1| putative N utilization substance protein B homolog [Legionella
longbeachae NSW150]
Length = 147
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+QALYQ + G EI +++ V + VD+++F ++HG
Sbjct: 9 KRKARKLALQALYQWLMAGTEVCEIEAQF-----------RVINKMDKVDVDYFCRLLHG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ I+ L + S L+ I ++LR G EL+ C +P +V++ E + +
Sbjct: 58 VPEHVASLETSITPFLDRE--ISALNPIELTVLRLGSFELLYCPEIPYKVVLDEAISLTK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+F D +++N VL+ ++R+
Sbjct: 116 EFGSQDGYRYVNGVLNNLARQVRSIE 141
>gi|260582481|ref|ZP_05850272.1| transcription antitermination factor NusB [Haemophilus influenzae
NT127]
gi|260094461|gb|EEW78358.1| transcription antitermination factor NusB [Haemophilus influenzae
NT127]
Length = 144
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTVENIETVDFSISPYIDRA--FDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|144897828|emb|CAM74692.1| NusB antitermination factor [Magnetospirillum gryphiswaldense
MSR-1]
Length = 160
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+K + RR ARLAAVQALY ++I G + + + E+ + + D+
Sbjct: 2 RKPNPGATRRSAARLAAVQALYSMEITGVTAEQALVEFRQRL-----DSEPRGKLAEPDM 56
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ +++ G +D I+ L W+ RL+ +L +ILRAG EL P V
Sbjct: 57 DLVALLVRGASFDGGDLDAHIARGLARDWTVDRLESVLRAILRAGAYELKARPQTPARVA 116
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+EYV + H F+ G EP +NAV+D+++R
Sbjct: 117 ITEYVDVTHAFYSGPEPGLVNAVMDRMARALRPAE 151
>gi|209363834|ref|YP_001423988.2| transcription antitermination protein NusB [Coxiella burnetii
Dugway 5J108-111]
gi|207081767|gb|ABS77377.2| N utilization substance protein B [Coxiella burnetii Dugway
5J108-111]
Length = 179
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
++N+++L ++ R AR A+QALYQ +IS++ E
Sbjct: 35 KNNRRNLMINKTRHNARRYALQALYQWFFCETKPDALISQF-----------MEEHDLSD 83
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D+ +F+ ++ G + ID L+++ L S L+ + S+LR + EL+ VP
Sbjct: 84 TDVAYFKEVVTGTIQHVAIIDELMTAHLDR--KISALNPVELSVLRLSIYELLHRKEVPY 141
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+V+I E + + +F K++NA+LD +S +
Sbjct: 142 KVVIDEALELVKEFGAEAGHKYVNAILDVLSSEIR 176
>gi|152979151|ref|YP_001344780.1| transcription antitermination protein NusB [Actinobacillus
succinogenes 130Z]
gi|171704320|sp|A6VPE8|NUSB_ACTSZ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|150840874|gb|ABR74845.1| NusB antitermination factor [Actinobacillus succinogenes 130Z]
Length = 142
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q K R AR AVQALY + TEI + T E
Sbjct: 1 MAEQKKK-----VSPRRRARECAVQALYSWAVSNNDATEIELSFIT-----------EQD 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + + + +D+ I+ L L I ++LR EL
Sbjct: 45 MKGVDTPYFRKLFRNTVTYLESVDVTIAPFLDRTS--EELTPIEKAVLRLATYELKYEPD 102
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V I+E + +A F D K+IN VLDK++
Sbjct: 103 VPYKVAINEAIELAKTFGAEDSHKYINGVLDKIA 136
>gi|126666701|ref|ZP_01737678.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
gi|126628746|gb|EAZ99366.1| transcription antitermination protein NusB [Marinobacter sp. ELB17]
Length = 166
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T K + R AR A+Q LYQ + + I +E+ V++
Sbjct: 16 TSSPGKSAQPKAGDRRRARGMAMQGLYQRHFSKSAISNIEAEF-----------MVDNDM 64
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
VDL +FR ++HG + +D LI L +D + +I+R G EL V
Sbjct: 65 SKVDLLYFRDLLHGTSREQAELDRLIEPFLDR--PLQEVDPVELAIVRLGAYELKFRLDV 122
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P +V+I+E + +A F + +F+N++LDK+SR+ +
Sbjct: 123 PYKVVINEGIEMAKRFGGTEGHRFVNSILDKLSRRLRLAE 162
>gi|52425030|ref|YP_088167.1| transcription antitermination protein NusB [Mannheimia
succiniciproducens MBEL55E]
gi|81609560|sp|Q65TX8|NUSB_MANSM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|52307082|gb|AAU37582.1| NusB protein [Mannheimia succiniciproducens MBEL55E]
Length = 143
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K+ R AR AVQALY I + + T +
Sbjct: 1 MTEQVKKRP----SPRRRARECAVQALYSFQISQNPVETVELSFVT-----------DQD 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD+ +FR + ++ +D ++ L + LD I +ILR V EL
Sbjct: 46 MKGVDMPYFRKLFRQTVENIPSVDSTMAPYLDRSAN--ELDPIEKAILRLAVYELKYELD 103
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F D K+IN VLDK++
Sbjct: 104 VPYKVVINEAIEVAKTFGAEDSHKYINGVLDKIA 137
>gi|113969444|ref|YP_733237.1| transcription antitermination protein NusB [Shewanella sp. MR-4]
gi|114046672|ref|YP_737222.1| transcription antitermination protein NusB [Shewanella sp. MR-7]
gi|117919549|ref|YP_868741.1| transcription antitermination protein NusB [Shewanella sp. ANA-3]
gi|119390820|sp|Q0HL87|NUSB_SHESM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390821|sp|Q0HXJ0|NUSB_SHESR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215719|sp|A0KU66|NUSB_SHESA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|113884128|gb|ABI38180.1| NusB antitermination factor [Shewanella sp. MR-4]
gi|113888114|gb|ABI42165.1| NusB antitermination factor [Shewanella sp. MR-7]
gi|117611881|gb|ABK47335.1| NusB antitermination factor [Shewanella sp. ANA-3]
Length = 134
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 15/148 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + G + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSGNNIADVEHEFLT-----------EQSLDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + GV +K +D L L + + +I+R EL VP +V I+E
Sbjct: 49 RELFAGVATKKTQLDELFIPHLDR--PIDEVSPVEKAIVRLAAYELTFRKDVPFKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK-VSRK 156
+ +A F + KF+N +LDK V+RK
Sbjct: 107 AIELAKAFGADESHKFVNGLLDKLVARK 134
>gi|16273216|ref|NP_439455.1| transcription antitermination protein NusB [Haemophilus influenzae
Rd KW20]
gi|145629373|ref|ZP_01785171.1| transcription antitermination protein NusB [Haemophilus influenzae
22.1-21]
gi|145633222|ref|ZP_01788953.1| transcription antitermination protein NusB [Haemophilus influenzae
3655]
gi|145638873|ref|ZP_01794481.1| transcription antitermination protein NusB [Haemophilus influenzae
PittII]
gi|148827000|ref|YP_001291753.1| transcription antitermination protein NusB [Haemophilus influenzae
PittGG]
gi|260581349|ref|ZP_05849165.1| transcription antitermination factor NusB [Haemophilus influenzae
RdAW]
gi|319776247|ref|YP_004138735.1| transcription antitermination protein [Haemophilus influenzae
F3047]
gi|319897123|ref|YP_004135318.1| transcription antitermination protein [Haemophilus influenzae
F3031]
gi|329123386|ref|ZP_08251950.1| transcription termination/antitermination factor NusB [Haemophilus
aegyptius ATCC 11116]
gi|1171874|sp|P45150|NUSB_HAEIN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215691|sp|A5UF14|NUSB_HAEIG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|1574763|gb|AAC22951.1| N utilization substance protein B (nusB) [Haemophilus influenzae Rd
KW20]
gi|144978216|gb|EDJ87980.1| transcription antitermination protein NusB [Haemophilus influenzae
22.1-21]
gi|144986068|gb|EDJ92658.1| transcription antitermination protein NusB [Haemophilus influenzae
3655]
gi|145271845|gb|EDK11754.1| transcription antitermination protein NusB [Haemophilus influenzae
PittII]
gi|148718242|gb|ABQ99369.1| transcription antitermination protein NusB [Haemophilus influenzae
PittGG]
gi|260092016|gb|EEW75963.1| transcription antitermination factor NusB [Haemophilus influenzae
RdAW]
gi|309750850|gb|ADO80834.1| Transcription antitermination protein NusB [Haemophilus influenzae
R2866]
gi|317432627|emb|CBY80988.1| transcription antitermination protein [Haemophilus influenzae
F3031]
gi|317450838|emb|CBY87062.1| transcription antitermination protein [Haemophilus influenzae
F3047]
gi|327470968|gb|EGF16423.1| transcription termination/antitermination factor NusB [Haemophilus
aegyptius ATCC 11116]
Length = 144
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + F LD I +ILR V EL
Sbjct: 47 MDGVDKPYFRKLFRQTIENIETVDFSISPYIDRA--FDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|167855582|ref|ZP_02478342.1| transcription antitermination protein NusB [Haemophilus parasuis
29755]
gi|167853273|gb|EDS24527.1| transcription antitermination protein NusB [Haemophilus parasuis
29755]
Length = 137
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR AVQALY I S ++ + T + VD+ +FR
Sbjct: 2 KVSPRRRARECAVQALYSWYISQNSIEQVELAFVT-----------DQDMQGVDMPYFRK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G ++ ID ++ L + LD I +ILR EL VP +V I+E +
Sbjct: 51 LLRGTVENVDVIDDILRPYLDRADN--ELDPIERTILRLASYELKFELDVPYKVAINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A F D K++N VLDK++
Sbjct: 109 EVAKVFGSDDSHKYVNGVLDKLA 131
>gi|126729172|ref|ZP_01744986.1| transcription antitermination factor NusB [Sagittula stellata E-37]
gi|126710162|gb|EBA09214.1| transcription antitermination factor NusB [Sagittula stellata E-37]
Length = 168
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 1 MTIQDNKKDL--KLSHR-----RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
M+ + K K S R +RL AVQALYQ++ G ++ E+ +RF A
Sbjct: 1 MSEANAPKPQPGKPSGNQKRKMRSASRLYAVQALYQMEQSGIPVDKVRREFLEFRFGAVD 60
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ D + L D+ F +I ++ + +D + L KW +R+D +L ++ RA
Sbjct: 61 D-DDGTEMLDGDVSLFSHVIEEALNWQAKVDQMTDRALVAKWPIARIDPVLRALFRAAGA 119
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
EL+ P +V+I EYV +A F+ E KF+NAVLD ++R+ + +
Sbjct: 120 ELVATD-TPPKVVIVEYVDVAVAFYPDGKEAKFVNAVLDHMAREAKPE 166
>gi|83858229|ref|ZP_00951751.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
HTCC2633]
gi|83853052|gb|EAP90904.1| transcription antitermination protein NusB [Oceanicaulis alexandrii
HTCC2633]
Length = 158
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
VQALYQ++ G ++ E+ +RF + E Y+ D ++F ++ G++ + +
Sbjct: 25 VQALYQMETSGSGAKAVVKEFRDHRFGYEDEPG---DYVETDEDFFENLVTGIVSIQADV 81
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D IS L E W SRLD + +ILRAG ELI VP V+I+EYV +AH FF G EP
Sbjct: 82 DKRISGVLKEGWKLSRLDATVRAILRAGGYELIARKDVPPAVVINEYVDVAHAFFEGTEP 141
Query: 144 KFINAVLDKVSRKEE 158
F+NA LD ++++
Sbjct: 142 GFVNATLDALAKQVR 156
>gi|237797516|ref|ZP_04585977.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. oryzae str. 1_6]
gi|331020366|gb|EGI00423.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. oryzae str. 1_6]
Length = 165
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E
Sbjct: 56 -RVDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLDL--TIEELDPVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|91792506|ref|YP_562157.1| transcription antitermination protein NusB [Shewanella
denitrificans OS217]
gi|119390818|sp|Q12Q42|NUSB_SHEDO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91714508|gb|ABE54434.1| NusB antitermination factor [Shewanella denitrificans OS217]
Length = 133
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSKNNVADVEHEFIT-----------EQNIDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV + + ID L+ L F + + +I+R EL VP +V I+E
Sbjct: 49 RELLAGVASKHEQIDDLLRPHLDR--KFEDVSPVEKAIVRLAGYELTFRKDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ +A F D KF+N +LDK+ R+
Sbjct: 107 AIELAKAFGADDSHKFVNGLLDKLVRR 133
>gi|311693386|gb|ADP96259.1| transcription antitermination protein NusB [marine bacterium HP15]
Length = 158
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q LYQ + ++I +E+ V++ VDL +FR ++ G
Sbjct: 22 RRRARALAMQGLYQRHFSKTAISDIEAEF-----------MVDNDMSKVDLLYFRDLLRG 70
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + +D LI L +D + +I+R G EL VP +V+I+E + +A
Sbjct: 71 VHREQGELDKLIEPFLDR--PIKEVDPVELAIVRLGAYELKHRLDVPYKVVINEGIEMAK 128
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KF+N++LDK+S + + +
Sbjct: 129 RFGGTEGHKFVNSILDKLSGRLRLAET 155
>gi|15602595|ref|NP_245667.1| transcription antitermination protein NusB [Pasteurella multocida
subsp. multocida str. Pm70]
gi|13431742|sp|P57868|NUSB_PASMU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|12721025|gb|AAK02814.1| NusB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 144
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q ++K + R AR AVQALY + S EI + E
Sbjct: 1 MTEQKHEKKISP---RRRARECAVQALYSWYVSQNSPAEIELNFMA-----------EQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + + +D ++ L + S LD I +ILR V EL
Sbjct: 47 LKGVDTAYFRRLFRQTAENVDAVDNIMIPYLDRE--VSELDPIEKAILRLAVYELKFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F D K++N VLDKV+
Sbjct: 105 VPYKVVINEAIEVAKVFGAEDSHKYVNGVLDKVA 138
>gi|320322797|gb|EFW78890.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. glycinea str. B076]
Length = 165
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV K ID +S CL + LD++ ++LR E
Sbjct: 56 -RVDNDFSNVDGAYFRELLHGVATNKTEIDTALSPCLDL--TIEELDLVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|330721632|gb|EGG99649.1| Transcription termination protein NusB [gamma proteobacterium
IMCC2047]
Length = 153
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 1 MTIQDNKKDLKLSHR---RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
M+ Q K R AR A+QALYQ ++ S EI E+
Sbjct: 1 MSDQSQPKPKNKRLSPALRRNARRLAMQALYQWELASSSLLEIEREF-----------RE 49
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
++ VD ++F ++H V K +D I L S L + +ILR EL++
Sbjct: 50 DNNMQKVDADYFTELLHRVPTLKTELDEQIKPLLDR--DISELTPVELTILRLSGYELLK 107
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VP VII+E V +A F D K++N +LDK++ + ++
Sbjct: 108 RPDVPYRVIINEGVELAKTFGATDGHKYVNGILDKLAGRLRLE 150
>gi|301170042|emb|CBW29646.1| transcription antitermination protein [Haemophilus influenzae
10810]
Length = 144
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q K +K R AR VQALY + G + ++ + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVELAFV-----------LDQD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +FR + ++ + +D IS + F LD I +ILR V EL
Sbjct: 47 MEGVDKPYFRKLFRQTIENIETVDFSISPYIDRA--FDELDPIETAILRLAVYELRFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 138
>gi|85858025|ref|YP_460227.1| transcription termination factor NusB [Syntrophus aciditrophicus
SB]
gi|119390838|sp|Q2LQK4|NUSB_SYNAS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|85721116|gb|ABC76059.1| transcription termination factor NusB [Syntrophus aciditrophicus
SB]
Length = 161
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R IAR A+Q LY ++++ E I Y + + ++
Sbjct: 12 MRQRRIAREIALQVLYSLEVVEMEAGEAIELYWAHYEAPMDA-----------RPFSSLL 60
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I G + ID LI + WS +R+ + SILR V EL C +P +V ++E +
Sbjct: 61 IEGAWKHRDQIDSLIG-GCSANWSIARMSKVDKSILRMAVFELCFCEDIPPKVTMNEAID 119
Query: 133 IAHDFFYGDEPKFINAVLD----KVSRKEEIKRSGCVSAITQ 170
+ + + FIN +LD K+ +K + + ++
Sbjct: 120 LGKVYGSENSGSFINGILDALYAKIHKKNDEQEIAPPPERSE 161
>gi|297155776|gb|ADI05488.1| transcription antitermination protein NusB [Streptomyces
bingchenggensis BCW-1]
Length = 150
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ + D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGTSVQTVLADWIRHARTDDRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI S W+ R+ ++ +ILR G EL+ P V+I E V
Sbjct: 53 VEGYAQYTARIDELI-STYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A +F D P F+N +L + + R G T+
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRFKELKPSLRRGEQQPTTE 149
>gi|317505974|ref|ZP_07963806.1| transcription antitermination factor NusB [Segniliparus rugosus
ATCC BAA-974]
gi|316255750|gb|EFV14988.1| transcription antitermination factor NusB [Segniliparus rugosus
ATCC BAA-974]
Length = 166
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 8/167 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ K + R ARL AV+ L++ + E+ +E + +
Sbjct: 1 MSDPAKSDSAKRAGSRRKARLRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQL--- 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ V++ GV D + +D IS L WS +RL + SILR V EL+
Sbjct: 58 -----TPYALVVLEGVRDHLEVVDQTISDHLRGDWSLNRLPAVDRSILRVAVWELLFAPE 112
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
VP V + E + +A + P FIN VL ++ R +
Sbjct: 113 VPTAVAVDEALELAKGLSTDESPGFINGVLGRLVELANQIRGAAEAG 159
>gi|85711195|ref|ZP_01042255.1| Transcription termination factor NusB [Idiomarina baltica OS145]
gi|85695108|gb|EAQ33046.1| Transcription termination factor NusB [Idiomarina baltica OS145]
Length = 139
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQA+Y + + EI +++ T ++ VD+++F
Sbjct: 1 MKPAA-RRKARKLAVQAVYSWQLSQNTFNEIEAQFLT-----------DNDTSKVDVDYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV + +D I+ L S LD + ++LR EL E + VP +V I+E
Sbjct: 49 LELLRGVGAFYKSLDEAIAPYLDR--PISELDPVELAVLRIAAYELRERYDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +A F D +F+N VLDK R
Sbjct: 107 AIELAKSFGADDSHRFVNGVLDKAVDALRPARQ 139
>gi|254440807|ref|ZP_05054300.1| transcription antitermination factor NusB [Octadecabacter
antarcticus 307]
gi|198250885|gb|EDY75200.1| transcription antitermination factor NusB [Octadecabacter
antarcticus 307]
Length = 146
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ +RL AVQAL+Q++ S + E+E +RF A E + D+ FR+++
Sbjct: 2 KSASRLYAVQALFQMEHSNQSIESVTREFENHRFGAIYEG---NEMAEGDVALFRILVET 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID + L KW +R+D L ++ RA +EL+ P V I+EYV +A
Sbjct: 59 AVNEQSKIDQMTDRALVAKWPLARIDPTLRALFRAAGVELLGRD-TPPRVAITEYVDVAK 117
Query: 136 DFF-YGDEPKFINAVLDKVSRKEE 158
FF G+EPKF+NAVLD ++R+ +
Sbjct: 118 AFFDGGEEPKFVNAVLDHMARQAK 141
>gi|296140288|ref|YP_003647531.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
gi|296028422|gb|ADG79192.1| NusB antitermination factor [Tsukamurella paurometabola DSM 20162]
Length = 165
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q K K S R AR AV L++++ G + ++ R A + V
Sbjct: 1 MPDQSENKRPKKSGARHRARKRAVDLLFEVEARGVT--DVDGLLAERRTLAADDASV--- 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
E+ ++ GV ++ +D +I+S LT W+ +RL + +ILR V EL
Sbjct: 56 --PPVSEYTAQLVTGVDVDREQLDSVITSHLTG-WTLARLPAVDRAILRVAVWELFNAPD 112
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP V++ E V +A + + P ++N VL KV+
Sbjct: 113 VPPAVVVDEAVELAKELSTDESPSYLNGVLGKVA 146
>gi|322515009|ref|ZP_08068019.1| transcription antitermination factor NusB [Actinobacillus ureae
ATCC 25976]
gi|322118998|gb|EFX91170.1| transcription antitermination factor NusB [Actinobacillus ureae
ATCC 25976]
Length = 163
Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
D ++ R AR AVQALY + S E+ + T + V
Sbjct: 21 DKRRGFMKVSPRRRARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNGV 69
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
DL +FR ++ + + ID + L +D I +ILR EL VP +
Sbjct: 70 DLPYFRKLLRSTVLYIEAIDGALRPFLDRAED--EVDPIERTILRLSAYELKYELDVPYK 127
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
V+I+E + +A F GD K+IN VLDK++
Sbjct: 128 VVINEGIEVAKVFGSGDSHKYINGVLDKLA 157
>gi|149185970|ref|ZP_01864285.1| NusB antitermination factor [Erythrobacter sp. SD-21]
gi|148830531|gb|EDL48967.1| NusB antitermination factor [Erythrobacter sp. SD-21]
Length = 150
Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ S R ARL AVQALYQ + G +T ++++E+ +R ++ +
Sbjct: 1 MSQNPK------SQSRSAARLGAVQALYQQQMEGTATAKLLNEFHLHRLG---KVIEDEE 51
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y D+++F ++ GV R+ ID L+++ L W+ +RLD + ILRAG ELI
Sbjct: 52 YADADVDFFDDLVKGVDARRAEIDELLTARLASGWTLARLDKTMLQILRAGSYELIARKD 111
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
VP ISEYV +A FF E KF+N +LD V+++
Sbjct: 112 VPKAAAISEYVDVAKAFFDDREAKFVNGILDAVAKE 147
>gi|158422890|ref|YP_001524182.1| antitermination protein [Azorhizobium caulinodans ORS 571]
gi|158329779|dbj|BAF87264.1| antitermination protein [Azorhizobium caulinodans ORS 571]
Length = 137
Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QALYQ+DI G EI++E+ET+ + E DV Y D FR ++ GV+ +++ I
Sbjct: 1 MQALYQMDIAGTPVNEILAEFETHWLGREVEGDV---YPEADRALFRTVVEGVLAQQRTI 57
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ LT W R+++++ + LRAG ELI P V+I+EYV +A FF +E
Sbjct: 58 DPMVDEALTAGWPLRRVELVMRATLRAGAFELIGKPETPARVVIAEYVNVAAAFFEREET 117
Query: 144 KFINAVLDKVSRKEEIKRSG 163
+NAVLD ++RK +
Sbjct: 118 GMVNAVLDSLARKLRAEEFA 137
>gi|210633860|ref|ZP_03297875.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
gi|210159029|gb|EEA90000.1| hypothetical protein COLSTE_01792 [Collinsella stercoris DSM 13279]
Length = 216
Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
LK++ R +AR A+Q L+Q ++ G S ++++ T ++
Sbjct: 3 SLKVNRGRTLARSQALQILFQAEVRGESVGDVLAGDFTLSKG-------------PLADY 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126
I GV ++ ID + ++ WS R+ ++LRA V EL ++ V+
Sbjct: 50 AIQIARGVDANRERIDSAL-RAVSANWSLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
I+E V IA + D F+N VL ++ R+
Sbjct: 109 INEAVEIAKAYGTDDSAGFVNGVLGRIVRER 139
>gi|221633595|ref|YP_002522821.1| transcription antitermination factor NusB [Thermomicrobium roseum
DSM 5159]
gi|221156287|gb|ACM05414.1| transcription antitermination factor NusB [Thermomicrobium roseum
DSM 5159]
Length = 168
Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ D+ L+ R AR+ A+Q LY++D+ S E++ ++
Sbjct: 22 NQKELDMSLARIRRQARILALQILYEVDVANHSLEEVLER-----------HRSQASIAQ 70
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ ++ GV ++ ID +I+ + +L + +ILR + EL+ VP+
Sbjct: 71 PVRRYAERLVTGVWADRERIDRMIAEA-APAFPVDQLPPVDRNILRIAIYELLHEPDVPL 129
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ I+E V IA + +F+N VL ++
Sbjct: 130 KAAINEAVEIAKQYGGESSSRFVNGVLGTIA 160
>gi|167470223|ref|ZP_02334927.1| transcription antitermination factor NusB [Yersinia pestis FV-1]
Length = 137
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 8 ARECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAV 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 57 NAASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFG 114
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ ++
Sbjct: 115 AEDSHKFVNGVLDKVAPTVRKRK 137
>gi|261365604|ref|ZP_05978487.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
25996]
gi|288565933|gb|EFC87493.1| transcription antitermination factor NusB [Neisseria mucosa ATCC
25996]
Length = 143
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQALYQ I + EI + + + D E F
Sbjct: 1 MKTPRRRARELAVQALYQAGINNTAAPEIAKN-----------IQDQPDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L I ++L EL P VII+E +
Sbjct: 50 LFFGTHTHAAEYIQQIRPLLDRDE--KDLSPIERAVLLMACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQLRPNDP 138
>gi|261405951|ref|YP_003242192.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
gi|329924770|ref|ZP_08279759.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
gi|261282414|gb|ACX64385.1| NusB antitermination factor [Paenibacillus sp. Y412MC10]
gi|328940435|gb|EGG36758.1| transcription antitermination factor NusB [Paenibacillus sp. HGF5]
Length = 152
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR VQ+LYQ+++ + E +S + + V + + E+ +++
Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQM-KEYVLQLVN 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K ID L++ L W SRL + ILR V EL VP +V ++E + ++
Sbjct: 61 GTWESKDSIDELLAHYLKG-WQVSRLSRVDRQILRLAVYELTYRDDVPGKVAVNEAIELS 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F + KF+N VL ++ ++ + +
Sbjct: 120 KHFGTEESGKFVNGVLGRMIQELDQVK 146
>gi|289208845|ref|YP_003460911.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
gi|288944476|gb|ADC72175.1| NusB antitermination factor [Thioalkalivibrio sp. K90mix]
Length = 187
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + H R +AR A+QALY + +I++E+ + + D E
Sbjct: 42 PEQRARHARSVARRRAMQALYSWQMTAAEPKDILAEF-----------RDDEEHAKADAE 90
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+FR I+ GV ++ +D + +LD + ++L G EL E VP V+I
Sbjct: 91 YFREILIGVTRNREALDARMEPY--LGRPLDQLDPVERALLWLGQWELAERIDVPYRVVI 148
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E V +A F ++IN VLD++S
Sbjct: 149 NEAVDLAKRFGAEQSHRYINGVLDRLSADLRGPE 182
>gi|83648594|ref|YP_437029.1| transcription antitermination protein NusB [Hahella chejuensis KCTC
2396]
gi|119390775|sp|Q2S9S0|NUSB_HAHCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|83636637|gb|ABC32604.1| transcription antitermination factor NusB [Hahella chejuensis KCTC
2396]
Length = 149
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 13/156 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K +R AR A+QALYQ + G S ++I +E+ V++ VD + F+
Sbjct: 3 KAMEKRRAARKLALQALYQWRVAGASISQIEAEF-----------AVDNDLQQVDRDLFK 51
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++GV +D L+ + + +D + S++R G EL VP V+I+E
Sbjct: 52 AVLYGVPSSVSELDALLQPFVDR--KLTDVDPVELSLIRMGAFELRSRIEVPYRVVINEA 109
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
V +A F D KF+N+VLDK++ +
Sbjct: 110 VELAKQFGGTDGHKFVNSVLDKLAPQLRQAEVAAAK 145
>gi|59711311|ref|YP_204087.1| transcription antitermination protein NusB [Vibrio fischeri ES114]
gi|197335476|ref|YP_002155467.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
gi|31076819|sp|Q8G9G3|NUSB_VIBFI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|75431770|sp|Q5E6Z7|NUSB_VIBF1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690266|sp|B5FBF9|NUSB_VIBFM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|26522774|dbj|BAC44861.1| NusB protein [Vibrio fischeri]
gi|59479412|gb|AAW85199.1| transcription antitermination factor NusB [Vibrio fischeri ES114]
gi|197316966|gb|ACH66413.1| transcription antitermination factor NusB [Vibrio fischeri MJ11]
Length = 155
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVI 72
R AR A+QA+Y + + +I ++ T + E D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHHANEPKLQTPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV +D + L+ LD + ++LR + E++ VP +V+I+E +
Sbjct: 70 FSGVALNHMKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A F D KF+N VLDK + K
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAAPTLRKK 155
>gi|110835031|ref|YP_693890.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
gi|119372273|sp|Q0VMI0|NUSB_ALCBS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110648142|emb|CAL17618.1| transcriptional terminator nusB [Alcanivorax borkumensis SK2]
Length = 150
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 13/159 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ R AR +QALYQ + G + ++I +++ + VD E+
Sbjct: 3 NPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLAN-----------QDFAKVDREY 51
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F ++HGV+ + + +D ++ L L + +ILR G EL E VP V+I+
Sbjct: 52 FHDLLHGVLGQVKTLDEQLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVIN 109
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
E + +A F D K++N VLDK++R+ +
Sbjct: 110 EGIELAKVFGAEDSFKYVNGVLDKLARQLRYAEASERRP 148
>gi|209517108|ref|ZP_03265955.1| NusB antitermination factor [Burkholderia sp. H160]
gi|209502501|gb|EEA02510.1| NusB antitermination factor [Burkholderia sp. H160]
Length = 144
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L Y D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGVM + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVMRDSEALSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHLDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D K++N VLDK+S + +
Sbjct: 108 ELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138
>gi|308174227|ref|YP_003920932.1| transcription termination factor NusB [Bacillus amyloliquefaciens
DSM 7]
gi|307607091|emb|CBI43462.1| transcription termination factor NusB [Bacillus amyloliquefaciens
DSM 7]
gi|328554172|gb|AEB24664.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens TA208]
gi|328912564|gb|AEB64160.1| transcription termination factor NusB [Bacillus amyloliquefaciens
LL3]
Length = 130
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + E I +F +++
Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAIEHALD---------------GEKTDAFFEQLVY 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A
Sbjct: 47 GVIEHQVQLDEMISGHLVN-WKLDRIANVDRAILRLAVYEMVYTDDIPANVSLNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F KF+N VL +
Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124
>gi|294635301|ref|ZP_06713799.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
23685]
gi|291091310|gb|EFE23871.1| transcription antitermination factor NusB [Edwardsiella tarda ATCC
23685]
Length = 139
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L++ L+ + L + +ILR + EL + VP +V I+E V +A F
Sbjct: 60 DYLDGLMAPVLSRQ--LDELGQVEKAILRVSIYELSKRQDVPYKVAINEGVELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK++ + R
Sbjct: 118 DSHKFVNGVLDKIAPQVRPNR 138
>gi|332525525|ref|ZP_08401682.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
gi|332109092|gb|EGJ10015.1| putative N utilization substance B [Rubrivivax benzoatilyticus JA2]
Length = 159
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 15/170 (8%)
Query: 1 MTIQDN--KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ + +K R +R A+Q LY+ I G I D + +
Sbjct: 1 MSTEPTAARKRAAPKSARRRSREIALQGLYEWLISGADAGTI-----------DAHMREQ 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + +D +++ + + + +L + ++L G EL C
Sbjct: 50 DGFDKCDRAHFDALLHGCIAEASALDAVLARHVDRRTN--QLSPVEHAVLMIGAYELTHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
VP V I+E V +A F D K++N VLDK + A
Sbjct: 108 LEVPYRVAINEAVELAKSFGGTDGHKYVNGVLDKAAGDLRPAEVAQRRAQ 157
>gi|196232646|ref|ZP_03131498.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
gi|196223408|gb|EDY17926.1| NusB antitermination factor [Chthoniobacter flavus Ellin428]
Length = 151
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R R AAVQ LYQID+ G + F ++ + +
Sbjct: 1 MGKRREGREAAVQYLYQIDLSGETPVNAEQ------FWMLRSGPGKAPVAPKTRIFAEQL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV + ID I + RL ++ +ILR + EL+ V +II+E +
Sbjct: 55 ALGVRKHLEEIDGYIKKYTAN-YELDRLAVVDRNILRVAIYELLHSPDVAPVIIINEAIE 113
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+A F F+N +LD++ KEE+ R +
Sbjct: 114 VAKKFGTDKSGGFVNGILDRI--KEEVGRPAREA 145
>gi|77919050|ref|YP_356865.1| transcription antitermination factor NusB [Pelobacter carbinolicus
DSM 2380]
gi|119390793|sp|Q3A4L2|NUSB_PELCD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|77545133|gb|ABA88695.1| NusB antitermination factor [Pelobacter carbinolicus DSM 2380]
Length = 156
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV-----ESVYLHVDLEWFR 70
R R A++ +Y D G S +++ + + D L E+
Sbjct: 6 RRTGRELAIKIIYSFDGTG-SVEALLATFWSNFRFRDDVLGEPLEDSSQAVAEPVREFAE 64
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + + ID LI + WS R+ + +ILR EL+ VPV VII+E
Sbjct: 65 DLVRGVAENLEKIDGLIGEF-STNWSLERMARVDLAILRMATYELLGHLDVPVSVIINEA 123
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
V I + + P F+N +LD++SR
Sbjct: 124 VEIGKRYGTKETPSFVNGILDRISR 148
>gi|255066867|ref|ZP_05318722.1| transcription antitermination factor NusB [Neisseria sicca ATCC
29256]
gi|255048942|gb|EET44406.1| transcription antitermination factor NusB [Neisseria sicca ATCC
29256]
Length = 143
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQALYQ I + EI + + + D E F
Sbjct: 1 MKTPRRRARELAVQALYQAGINNTAAPEIAKN-----------IQDQPDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L I ++L EL P VII+E +
Sbjct: 50 LFFGTHTHAAEYIQQIRPLLDRDE--KDLSPIERAVLLMACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQLRPNDP 138
>gi|254282810|ref|ZP_04957778.1| transcription antitermination factor NusB [gamma proteobacterium
NOR51-B]
gi|219679013|gb|EED35362.1| transcription antitermination factor NusB [gamma proteobacterium
NOR51-B]
Length = 149
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ RR AR A+QALYQ + TEI +E+ V++ + HVD E+F +
Sbjct: 9 AARRRKARHYALQALYQWTMNRNDLTEIEAEF-----------RVDNDFSHVDGEYFHEL 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G++ +D + L S S LD + ++LR G EL + VP +V I+E V
Sbjct: 58 LTGIVRTADSLDESLVPLLDR--SISELDPVERNLLRLGAFELRDRIDVPYKVAINEAVA 115
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+A F D +++N VLDK+++
Sbjct: 116 LAKKFGATDSFRYVNGVLDKLAQDLRSIEIAA 147
>gi|33151658|ref|NP_873011.1| transcription antitermination protein NusB [Haemophilus ducreyi
35000HP]
gi|39931811|sp|Q7VNQ2|NUSB_HAEDU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|33147879|gb|AAP95400.1| transcription termination factor [Haemophilus ducreyi 35000HP]
Length = 137
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR AVQALY I S E+ + T + VDL +FR
Sbjct: 2 KVSPRRRARECAVQALYSWYISQNSIEEVELAFVT-----------DQDMKGVDLPYFRK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G + ID I L + +D I +ILR EL VP +V+I+E +
Sbjct: 51 LLRGTALYVEAIDHDIRPYLDRMEN--DVDPIERTILRLATYELKYELDVPYKVVINEGI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A F D K+IN +LDK++
Sbjct: 109 EVAKVFGSDDSHKYINGILDKLA 131
>gi|332970403|gb|EGK09395.1| transcription antitermination factor NusB [Kingella kingae ATCC
23330]
Length = 151
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 14/162 (8%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + N+ K S R AR AVQALYQ+ + E+ S +
Sbjct: 1 MESKMNQPKTKKS-PRRRAREFAVQALYQVAMNQSIAAEVASHMREH-----------GD 48
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + D E F + G ++ I L + ++ I +IL EL
Sbjct: 49 FKNADNELFTELFFGAHQNQREYMQHIRPHLDRDEN--AVNPIERAILLLATHELAAMPQ 106
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P V+I+E V + F D KFIN++LDK++ +
Sbjct: 107 TPYPVVINEAVELTKTFGGTDSHKFINSILDKLAGELRPDEP 148
>gi|154686696|ref|YP_001421857.1| transcription antitermination protein NusB [Bacillus
amyloliquefaciens FZB42]
gi|166215663|sp|A7Z6K0|NUSB_BACA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|154352547|gb|ABS74626.1| NusB [Bacillus amyloliquefaciens FZB42]
Length = 130
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + + I +F +++
Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNDAIEHALD---------------GEKTDAFFEQLVY 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + +D +IS L W R+ + +ILR V E++ +P V ++E + +A
Sbjct: 47 GVIEHQVQLDEMISGHLVN-WKLDRIANVDRAILRLAVYEMVYSDDIPANVSLNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F KF+N VL +
Sbjct: 106 KRFGDDKAAKFVNGVLSNI 124
>gi|254427255|ref|ZP_05040962.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
gi|196193424|gb|EDX88383.1| transcription antitermination factor NusB [Alcanivorax sp. DG881]
Length = 149
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 13/154 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR +QALYQ + G + ++I +++ + VD E+F ++
Sbjct: 7 SARRKARRFTLQALYQWQLAGAAVSDIEAQFLAN-----------QDFAKVDREYFHDLL 55
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
HGV+ + + +D L++ L L + +ILR G EL E VP V+I+E + +
Sbjct: 56 HGVLGQVKTLDELLTPYLDR--RVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIEL 113
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
A F D K++N VLDK++R+ +
Sbjct: 114 AKVFGAEDSFKYVNGVLDKLARQLRYAEASERRP 147
>gi|209694495|ref|YP_002262423.1| transcription antitermination protein NusB [Aliivibrio salmonicida
LFI1238]
gi|238055348|sp|B6EIA0|NUSB_ALISL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|208008446|emb|CAQ78611.1| N utilization substance protein B (protein NusB) [Aliivibrio
salmonicida LFI1238]
Length = 155
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVI 72
R AR A+QA+Y I + I ++ T + E + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQISKENVAAIEEQFLTADKYDEEEHHAKEPKLQAPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV +D + L+ LD + ++LR + E++ VP +V+I+E +
Sbjct: 70 FSGVALNHIKLDGKMRPYLSR--PLQDLDQMELALLRMSIYEMMNRDDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A F D KF+N VLDK + K
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAAPTLRKK 155
>gi|90023094|ref|YP_528921.1| transcription antitermination protein NusB [Saccharophagus
degradans 2-40]
gi|119390816|sp|Q21F20|NUSB_SACD2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|89952694|gb|ABD82709.1| N utilization substance protein B [Saccharophagus degradans 2-40]
Length = 150
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
RG AR A+QALYQ ++ G + I +E+ T ++ VD+E+F I+HG
Sbjct: 8 RGRARHFAMQALYQWEMSGNALHVIEAEFHT-----------DNDMSKVDVEYFHEILHG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V K +D LT +D + ++LR E + VP +V+I+E V +A
Sbjct: 57 VAAIKSTLDETFKPFLTGL-RLDEIDPVSLAVLRQACYEFEKRVDVPYKVVINEAVNLAK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D KFIN VLDKV+ +
Sbjct: 116 KFGAADSHKFINGVLDKVALRVRKDE 141
>gi|82701147|ref|YP_410713.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
gi|119390789|sp|Q2YD50|NUSB_NITMU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|82409212|gb|ABB73321.1| NusB antitermination factor [Nitrosospira multiformis ATCC 25196]
Length = 158
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RR +AR A+Q LYQ + G S I + +L + D E+F +
Sbjct: 18 KSRRRLARELALQGLYQWCVAGGSAGTI-----------EAQLRDTEEFPKTDEEYFSRL 66
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+HGV+ + ++ I CL F+ L + SIL G EL +P +I+E V
Sbjct: 67 LHGVLMQAPELEKEIQPCLDR--PFNELSPVEISILLLGAYELERHPEIPYRAVINEAVE 124
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+A + K++N VLDK++ K G
Sbjct: 125 LAKAYGGTHGHKYVNGVLDKLAVKLRAAEIGA 156
>gi|326793813|ref|YP_004311633.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
gi|326544577|gb|ADZ89797.1| NusB antitermination factor [Marinomonas mediterranea MMB-1]
Length = 162
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T K S R +R A+QA+YQ + + EI +++ +E
Sbjct: 9 TQPKKAKKPSRSQLRSASRGLALQAIYQWQMNHSAVNEIETQF-----------TLEQDM 57
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D +FR ++ GV + + +D L L S LD I ++LR G EL V
Sbjct: 58 SACDKVYFRDLLQGVTAKAKELDSLFEELLDRA--LSELDAIELAVLRIGSYELAHRLDV 115
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
P V I+E V +A F + K++N +LDK++++ +
Sbjct: 116 PYRVAINESVELAKSFGASESHKYVNGILDKLAQRVRREEIAA 158
>gi|114562217|ref|YP_749730.1| transcription antitermination protein NusB [Shewanella
frigidimarina NCIMB 400]
gi|119390819|sp|Q086C3|NUSB_SHEFN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114333510|gb|ABI70892.1| NusB antitermination factor [Shewanella frigidimarina NCIMB 400]
Length = 134
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR AVQA+Y + ++ E+ T E VD+ +F
Sbjct: 1 MKPSE-RRKARRLAVQAIYSWQLSQNKVADVEHEFLT-----------EQNTDGVDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV + ID L+ L F + + +I+R EL VP +V I+E
Sbjct: 49 RELLTGVASKTSQIDELLKPHLDR--KFEEVSPVEKAIVRLATYELTFRKDVPFKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ +A F D KF+N +LDK+ + +
Sbjct: 107 GIELAKAFGAEDSHKFVNGLLDKLVKHK 134
>gi|213969286|ref|ZP_03397424.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tomato T1]
gi|301381790|ref|ZP_07230208.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tomato Max13]
gi|302061010|ref|ZP_07252551.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tomato K40]
gi|302130538|ref|ZP_07256528.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tomato NCPPB 1108]
gi|213925964|gb|EEB59521.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. tomato T1]
gi|330964918|gb|EGH65178.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. actinidiae str. M302091]
Length = 165
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVATNQTEIDTALTPCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|260913902|ref|ZP_05920376.1| transcription termination/antitermination factor NusB [Pasteurella
dagmatis ATCC 43325]
gi|260631989|gb|EEX50166.1| transcription termination/antitermination factor NusB [Pasteurella
dagmatis ATCC 43325]
Length = 144
Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AVQALY + S EI E+ E VD+ +FR
Sbjct: 8 KKVSPRRRARECAVQALYSWYVSQNSPAEIELEFVA-----------EQDLKGVDVPYFR 56
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ ++ + +D++++ L + +D I +ILR V EL VP +V+I+E
Sbjct: 57 KLFRQTVENVETVDVIMAPYLDR--DVNEVDPIEKAILRLAVYELKFELDVPYKVVINEA 114
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
+ + F D K++N VLDKV+
Sbjct: 115 IEVTKVFGADDSHKYVNGVLDKVA 138
>gi|147677514|ref|YP_001211729.1| transcription termination factor [Pelotomaculum thermopropionicum
SI]
gi|189035895|sp|A5D319|NUSB_PELTS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|146273611|dbj|BAF59360.1| transcription termination factor [Pelotomaculum thermopropionicum
SI]
Length = 144
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+Q L+Q+D+ G E +D L E+ R+++
Sbjct: 2 SRRQARERALQILFQVDVGGADPGEAFRL-----------MDEGFGELKKYQEFARLLVG 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ ID +I + +++ W+ +R+ + +I+R + E+ C +P V ++E V +
Sbjct: 51 GTLENLAAIDRVI-AGVSKDWNINRMANVDRNIIRMALYEIFFCEDIPYSVSVNEAVELG 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ + +FIN +L ++ E R
Sbjct: 110 KTYGGEESGRFINGILGRIVESPEEYRP 137
>gi|255263487|ref|ZP_05342829.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
gi|255105822|gb|EET48496.1| transcription antitermination factor NusB [Thalassiobium sp. R2A62]
Length = 157
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 1 MTIQ---DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
MT + + K+ + R ARL A QALYQ+++ G + + E+ETYRF E+
Sbjct: 1 MTDKPSGNQKRKM-----RSAARLFATQALYQMELSGQTVDAVRQEFETYRFG---EVID 52
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D+E FR ++ ++ + ID + L KW+ R+D L ++ RA EL +
Sbjct: 53 GDELAEGDVETFRDLLENAVNHQALIDQMTDRALVAKWAIDRIDPTLRALFRAAGAELTQ 112
Query: 118 CHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEE 158
S P +V+I E+V +A FF EPKF+NAVLD ++R+ +
Sbjct: 113 S-STPPKVVIVEFVDVAVAFFPEGKEPKFVNAVLDHMAREAQ 153
>gi|284006399|emb|CBA71635.1| N utilization substance protein B [Arsenophonus nasoniae]
Length = 137
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQA+Y + G S ++ E+ T E +VD+ +F
Sbjct: 1 MKPAA-RHRARECAVQAIYSWQLSGNSIADVEEEFLT-----------EQDMSNVDVTYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R +++GV +D ++ L+ + L + ++LR + EL + VP +V I+E
Sbjct: 49 RELLNGVSTHVSELDKKMAPYLSRQ--LEELGQVEKAVLRLAMFELCYRNDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F + KFIN LDKV
Sbjct: 107 AIELAKVFGAEESHKFINGALDKVV 131
>gi|254448007|ref|ZP_05061471.1| transcription antitermination factor NusB [gamma proteobacterium
HTCC5015]
gi|198262433|gb|EDY86714.1| transcription antitermination factor NusB [gamma proteobacterium
HTCC5015]
Length = 188
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+ +K L + R R +QALYQ +++++ ++ + + + +
Sbjct: 34 SQGKRRKKLSRTEARRKTRQRILQALYQCYFNPLPSSKLVQQF----YDDEVGEEEGNDM 89
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
VD ++F+ + +D+ + +D L + L RLD + ILR V EL E V
Sbjct: 90 FGVDADFFQAALSTCVDKTEQLDELYCAHLK--MPIDRLDPVELCILRLAVFELSERLDV 147
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P V+I+E V +A + D KFIN V+DK +R
Sbjct: 148 PRRVVINEAVELAKSYGAEDGHKFINGVIDKTARDLRPHEQ 188
>gi|241662317|ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii
12D]
gi|240864344|gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D]
Length = 155
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLKL--SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT +++ K R AR A+Q LYQ + + + +
Sbjct: 1 MTQDNSQAKTKAPAKSARRRARELALQGLYQWLLNRNDPGVVEAHLQD-----------A 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V + F + K++N VLDK++ +
Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 153
>gi|330877563|gb|EGH11712.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. morsprunorum str. M302280PT]
Length = 165
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + +EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALSEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +F ++HGV + ID ++ CL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFHELLHGVATNQTEIDTALTPCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|323702771|ref|ZP_08114431.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
gi|323532288|gb|EGB22167.1| NusB antitermination factor [Desulfotomaculum nigrificans DSM 574]
Length = 144
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QAL+QID+ + E +LE+ R ++ G
Sbjct: 3 RRQARETALQALFQIDVGKIEPEFALKN-----------TAEEFGAGSQELEFARQLVTG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ ID +IS +++W SR+ + +I+R + E++ +P V I+E V +A
Sbjct: 52 TLEHINEIDEIISRV-SKEWQLSRMANVDRNIMRLALYEMMFRDDIPGSVSINEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F D KF+N +L KV + ++
Sbjct: 111 AFGGADSGKFVNGILGKVLASQAEFKAAVSVP 142
>gi|260767831|ref|ZP_05876766.1| transcription termination protein NusB [Vibrio furnissii CIP
102972]
gi|260617340|gb|EEX42524.1| transcription termination protein NusB [Vibrio furnissii CIP
102972]
gi|315179339|gb|ADT86253.1| N utilization substance protein B [Vibrio furnissii NCTC 11218]
Length = 156
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVI 72
R AR A+QA+Y I + I ++ + + E D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKDNVATIEEQFLSGGKYDEEEHHASEPALAAPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|257792277|ref|YP_003182883.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
gi|257476174|gb|ACV56494.1| NusB antitermination factor [Eggerthella lenta DSM 2243]
Length = 195
Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ +R AR AA+Q LY +I S I E + E+
Sbjct: 1 MAAKRHERTSARRAALQVLYTSEITDESPAAI------------AEGNSRLDEDGPLPEY 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+
Sbjct: 49 ALKLVLGVESHRCAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTIN 107
Query: 129 EYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKR 161
E V +A DF D +F+N +L ++++ E +
Sbjct: 108 EAVELAKDFGGEDESHRFVNGILGRIAKMLEGEE 141
>gi|302338941|ref|YP_003804147.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
gi|301636126|gb|ADK81553.1| NusB antitermination factor [Spirochaeta smaragdinae DSM 11293]
Length = 140
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+ A QA+Y + E++ E + ++ + R++
Sbjct: 1 MGSRRKARILAFQAIYSWEFHKPLLAELLQF-------DWLEEERKAKLDTETWLFARLL 53
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ ID I + L E W FSRL + +ILR EL+ VP V I E V
Sbjct: 54 VQGTIENCDTIDHRIQNRL-EHWDFSRLSKVDLAILRLSTYELLFQQDVPASVAIDEAVD 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A DF D +FIN VLD + ++ E
Sbjct: 113 LAKDFGGDDSYRFINGVLDSIRKERE 138
>gi|94968243|ref|YP_590291.1| NusB antitermination factor [Candidatus Koribacter versatilis
Ellin345]
gi|119372272|sp|Q1ISD3|NUSB_ACIBL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|94550293|gb|ABF40217.1| NusB antitermination factor [Candidatus Koribacter versatilis
Ellin345]
Length = 146
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R A+Q L+Q+D+ S + + R + E+ F + +
Sbjct: 8 RRKSRELALQMLFQMDMGKQSADHVEKTFWAERKDLEEEVRS-----------FAIDLFH 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V +++ + E W R+ + +ILR E + P V+I+E + IA
Sbjct: 57 VAEKRSEEIDKLIEKHAEHWRMERMAAVDRNILRGACAEFMGFPKTPKPVVINESLEIAR 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F + +FIN VLD V+R+ + +R
Sbjct: 117 RFSSPESVQFINGVLDSVARELDAER 142
>gi|225873914|ref|YP_002755373.1| transcription antitermination factor NusB [Acidobacterium
capsulatum ATCC 51196]
gi|225793742|gb|ACO33832.1| transcription antitermination factor NusB [Acidobacterium
capsulatum ATCC 51196]
Length = 144
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 11/148 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + +R +R A+Q L+Q D+ + ++ + R D F
Sbjct: 1 MTTTGKRRKSRELAMQMLFQADVGKQTPDDVRKTFWEAREEV-----------EPDTRGF 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ V ++ + + W SR+ + ++LR + EL+ P +II+E
Sbjct: 50 AEDLFRVAMNREEEIDTLIEQHSANWKLSRMAAVDRNVLRMAIAELLGFPGTPAPIIINE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ IA + + F+N VLD +SR+
Sbjct: 110 ALEIARRYSAPESVNFLNGVLDAISRQR 137
>gi|189219673|ref|YP_001940314.1| transcription termination protein NusB [Methylacidiphilum
infernorum V4]
gi|259514863|sp|B3DWQ3|NUSB_METI4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189186531|gb|ACD83716.1| Transcription termination protein NusB [Methylacidiphilum
infernorum V4]
Length = 143
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R VQ LYQ ++ G ++ ++ + S D E +
Sbjct: 3 SRRKIRELIVQFLYQWEMNKGVGLDNMLLDFWDF-----------SPLDQKDKEAVEQWL 51
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+ + K+ I+ I+S + WS RL + IL G+ E++ +P V I+E V I
Sbjct: 52 KEIAEHKEAIEEKINSYVKN-WSLDRLAPVDKCILILGIYEILYRKDIPPAVSINESVEI 110
Query: 134 AHDFFYGDEPKFINAVLDKVSRK-EEIKRSGCV 165
A + + KF+N +LD V + C
Sbjct: 111 AKKYSTEESGKFVNGILDSVLKDSGRKAWMSCP 143
>gi|149187999|ref|ZP_01866294.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
gi|148837987|gb|EDL54929.1| transcription antitermination protein NusB [Vibrio shilonii AK1]
Length = 155
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + + ++ + Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATVEEQFLSGGKYDEEEHHAAEPALTAPETDVVYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LTGVALNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTSREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|256821700|ref|YP_003145663.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
gi|256795239|gb|ACV25895.1| NusB antitermination factor [Kangiella koreensis DSM 16069]
Length = 142
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QA+YQ + EI ++Y T VD +F+ + G
Sbjct: 10 RRRAREYAMQAIYQWQMSDNPLNEIEAQYLTTMNA-----------KKVDTVYFQELFSG 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ ID ++ + +D I +I+R EL + VP +V+I+E + +A
Sbjct: 59 VLTNLDEIDEALAP--ALEREIEGIDPIERAIIRLSAFELKKRVDVPKKVVINEGIELAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D KF+N VLDK+S+
Sbjct: 117 TFGATDGHKFVNGVLDKISKALRPHE 142
>gi|237785587|ref|YP_002906292.1| N utilization substance protein B [Corynebacterium kroppenstedtii
DSM 44385]
gi|237758499|gb|ACR17749.1| N utilization substance protein B [Corynebacterium kroppenstedtii
DSM 44385]
Length = 192
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + K R AR AV L++ + ++ + +++ +
Sbjct: 36 TKSTRSGFKRHGSRYKARRRAVDILFEAEFRDQDPVYVVEQRRELSQDSESGVL------ 89
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
++ I+ GV + ID I+S L+ W R+ + +++R EL+ VP
Sbjct: 90 -PVSDYTATIVSGVAENLDGIDSAIASHLSSTWRLDRIPAVDRAVMRVSTWELLHNEEVP 148
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+V +SE + +A ++ P ++NAVLD ++ + + +S S
Sbjct: 149 PKVAVSEGIELASEYSTDVAPAYVNAVLDDIAGEVQRSQSNDES 192
>gi|161525612|ref|YP_001580624.1| transcription antitermination protein NusB [Burkholderia
multivorans ATCC 17616]
gi|189349659|ref|YP_001945287.1| transcription antitermination protein NusB [Burkholderia
multivorans ATCC 17616]
gi|221201158|ref|ZP_03574198.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2M]
gi|221206389|ref|ZP_03579402.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2]
gi|221213666|ref|ZP_03586640.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD1]
gi|238687024|sp|A9AF25|NUSB_BURM1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|160343041|gb|ABX16127.1| NusB antitermination factor [Burkholderia multivorans ATCC 17616]
gi|189333681|dbj|BAG42751.1| N utilization substance protein B [Burkholderia multivorans ATCC
17616]
gi|221166455|gb|EED98927.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD1]
gi|221173698|gb|EEE06132.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2]
gi|221179008|gb|EEE11415.1| transcription antitermination factor NusB [Burkholderia multivorans
CGD2M]
Length = 145
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + S+ EI D +L Y D
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + ++ + +L + ++L EL P V+I+E
Sbjct: 49 DAILHGVIREHATLVDALTP--SLDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|258542345|ref|YP_003187778.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-01]
gi|256633423|dbj|BAH99398.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-01]
gi|256636482|dbj|BAI02451.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-03]
gi|256639535|dbj|BAI05497.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-07]
gi|256642591|dbj|BAI08546.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-22]
gi|256645646|dbj|BAI11594.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-26]
gi|256648699|dbj|BAI14640.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-32]
gi|256651752|dbj|BAI17686.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-01-42C]
gi|256654743|dbj|BAI20670.1| transcription antitermination factor NusB [Acetobacter pasteurianus
IFO 3283-12]
Length = 174
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 1 MTIQDNKKDLKLS-HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--ADTELDV 57
MT ++ LK + R AR+AAVQAL+QID G +I ++ +RF D
Sbjct: 1 MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ D + F I+ V + + + L E W +RLD +L ++L A E E
Sbjct: 61 DGCIPEADTQLFSHIVRLVTSMRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+
Sbjct: 121 GD-APAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164
>gi|323527047|ref|YP_004229200.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
gi|323384049|gb|ADX56140.1| NusB antitermination factor [Burkholderia sp. CCGE1001]
Length = 144
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K + +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLAAKLRVTET 138
>gi|295677368|ref|YP_003605892.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
gi|295437211|gb|ADG16381.1| NusB antitermination factor [Burkholderia sp. CCGE1002]
Length = 144
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L Y D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGYDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGVM + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVMRDSEELSAAIAPCLDR--PIDQLSPVERAVLLVAAFELKNHVDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D K++N VLDK+S + +
Sbjct: 108 ELTKTFGGSDGYKYVNGVLDKLSAQLRAAET 138
>gi|88859180|ref|ZP_01133821.1| transcription termination factor [Pseudoalteromonas tunicata D2]
gi|88819406|gb|EAR29220.1| transcription termination factor [Pseudoalteromonas tunicata D2]
Length = 136
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR+ A+QA+Y + G + +I + +E+ +D+E+F
Sbjct: 1 MKPAA-RRKARILALQAIYSWQVSGNAIADIEQQML-----------LENDISKIDVEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV + + +D+++S L + +D + +ILR EL VP +V I+E
Sbjct: 49 KDLACGVAVQHKVLDVILSPHLAR--PYEDIDFVEKAILRLSAYELKFREDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ +A F D KF+N VLDK ++
Sbjct: 107 GIELAKMFGAEDSHKFVNGVLDKAVKELRA 136
>gi|254180977|ref|ZP_04887575.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1655]
gi|184211516|gb|EDU08559.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1655]
Length = 145
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + + +EI D +L Y D
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNAAPSEI-----------DAQLRGALGYDKADKTLL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + IS + +L + ++L EL P VII+E
Sbjct: 49 DTILHGVIREHATLAEAISP--SLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVKLRPAET 139
>gi|66047685|ref|YP_237526.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. syringae B728a]
gi|75500475|sp|Q4ZMY4|NUSB_PSEU2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|63258392|gb|AAY39488.1| Antitermination protein NusB [Pseudomonas syringae pv. syringae
B728a]
Length = 165
Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|156973480|ref|YP_001444387.1| transcription antitermination protein NusB [Vibrio harveyi ATCC
BAA-1116]
gi|269962347|ref|ZP_06176697.1| N utilization substance protein B [Vibrio harveyi 1DA3]
gi|166215728|sp|A7MWU1|NUSB_VIBHB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|156525074|gb|ABU70160.1| hypothetical protein VIBHAR_01170 [Vibrio harveyi ATCC BAA-1116]
gi|269832843|gb|EEZ86952.1| N utilization substance protein B [Vibrio harveyi 1DA3]
Length = 155
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVI 72
R AR A+QA+Y I + I ++ + + EL D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKDNVATIEEQFLSGDKYDEEELHASEPALAAPETDVAYFREL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D I ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LSGVVLSHSELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|91784900|ref|YP_560106.1| transcription antitermination protein NusB [Burkholderia xenovorans
LB400]
gi|119372284|sp|Q13V35|NUSB_BURXL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91688854|gb|ABE32054.1| NusB antitermination factor [Burkholderia xenovorans LB400]
Length = 144
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++HGV+ + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 VLHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHLDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK+S + +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLSAQLREDET 138
>gi|88704433|ref|ZP_01102147.1| N utilization substance protein B [Congregibacter litoralis KT71]
gi|88701484|gb|EAQ98589.1| N utilization substance protein B [Congregibacter litoralis KT71]
Length = 150
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 16/161 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q ++ L RR AR A+QALYQ + G + T+I +E+ T +
Sbjct: 1 MSKQAQQE---LVARRRKARHYALQALYQWHMAGATATDIEAEFRT-----------DYD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ VDLE+F+ +IHGV + +D L+ L + LD I S+LR G EL +
Sbjct: 47 FSVVDLEYFQALIHGVPPLVEELDSLLEPLLDRE--IRELDPIERSLLRMGGFELRDRID 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP V+I+E V +A F + K+IN VLDK++R+
Sbjct: 105 VPYRVVINESVALAKKFGAAESYKYINGVLDKLARQLRGPE 145
>gi|325833527|ref|ZP_08165976.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
gi|325485451|gb|EGC87920.1| transcription antitermination factor NusB [Eggerthella sp. HGA1]
Length = 200
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ +R AR AA+Q LY +I S I E D E+
Sbjct: 1 MAAKRHERTSARRAALQVLYTSEITDESPAAI------------AEGDRRLEEDGPLPEY 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++ GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+
Sbjct: 49 ALMLVRGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTIN 107
Query: 129 EYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169
E V +A DF D +F+N +L ++++ E + S A +
Sbjct: 108 EAVELAKDFGGEDESHRFVNGILGRIAKMLEGEESQEADAPS 149
>gi|254253011|ref|ZP_04946329.1| Transcription termination factor [Burkholderia dolosa AUO158]
gi|124895620|gb|EAY69500.1| Transcription termination factor [Burkholderia dolosa AUO158]
Length = 145
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + S+ EI D +L Y D +
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLLDA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + I+ +L + ++L EL P V+I+E V
Sbjct: 51 ILHGVIREHATLVEAIAP--ALDRPIDQLSPVERAVLLIATFELTHHIETPYRVVINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K +
Sbjct: 109 ELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|330969737|gb|EGH69803.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 165
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID + CL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVATNQTEIDTALKPCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|310642666|ref|YP_003947424.1| transcription antitermination factor nusb [Paenibacillus polymyxa
SC2]
gi|309247616|gb|ADO57183.1| Transcription antitermination factor NusB [Paenibacillus polymyxa
SC2]
Length = 149
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR AVQ++Y +++ + + V V + +
Sbjct: 2 KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQEAAEENEAEVVI-KNAEVLRAYVLEHVR 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K+ ID L++ L W SRL + ILR V E+I VP +V ++E + ++
Sbjct: 61 GTWEHKEAIDGLLADYLKG-WQISRLSRVDRQILRLAVYEMIFREDVPAKVAVNEAIELS 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KF+N VL +V ++ E ++
Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELEQLKA 147
>gi|253999962|ref|YP_003052025.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
gi|253986641|gb|ACT51498.1| NusB antitermination factor [Methylovorus sp. SIP3-4]
Length = 158
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ D K K +K S R +R A++ +Y+ + I+ EL
Sbjct: 1 MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLMNQADFRAILR-----------ELA 49
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
E + D E+ R ++ GV+ ++ +D I+ + L I IL ELI
Sbjct: 50 DEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
S+P V I+E V +A + D K++N VLDK++ + R G VS T+
Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEA---RPGEVSRHTR 158
>gi|186475383|ref|YP_001856853.1| transcription antitermination protein NusB [Burkholderia phymatum
STM815]
gi|238691269|sp|B2JED0|NUSB_BURP8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|184191842|gb|ACC69807.1| NusB antitermination factor [Burkholderia phymatum STM815]
Length = 145
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L Y D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPAGEI-----------DAQLRGAQGYDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + + ++ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVIRDSEALSADLAPCLDR--PIDQLSPVERAVLLVAAYELKNHIDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK+S K + +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLSAKLRVDET 138
>gi|330953122|gb|EGH53382.1| transcription antitermination protein NusB [Pseudomonas syringae
Cit 7]
Length = 165
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID +S CL + LD I ++LR E
Sbjct: 56 -RVDNDFSNVDGPYFRELLHGVATNQTEIDAALSPCLDL--TIEELDPIELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|28867922|ref|NP_790541.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
str. DC3000]
gi|32171596|sp|Q889Q5|NUSB_PSESM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28851158|gb|AAO54236.1| N utilization substance protein B [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 165
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID ++ CL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVAINQTEIDTALTPCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|78065528|ref|YP_368297.1| transcription antitermination protein NusB [Burkholderia sp. 383]
gi|119372282|sp|Q39IR3|NUSB_BURS3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|77966273|gb|ABB07653.1| NusB antitermination factor [Burkholderia sp. 383]
Length = 145
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + S+ EI D +L Y D E
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELLEA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + ++ + +L + ++L EL P VII+E V
Sbjct: 51 ILHGVIREHATLVEALTP--SLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K +
Sbjct: 109 ELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|160872402|ref|ZP_02062534.1| transcription antitermination factor NusB [Rickettsiella grylli]
gi|159121201|gb|EDP46539.1| transcription antitermination factor NusB [Rickettsiella grylli]
Length = 148
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 16/159 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + K + K R AR AVQA+YQ + + + I +++ +
Sbjct: 1 MTQKSKKNNFKAKQR---ARRFAVQAIYQWQLTQETFSVIQTKFLA-----------QEE 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD +F +I+ G+++ + +D + S + +LD + +ILR G EL+ C
Sbjct: 47 MKSVDTAYFTLIVQGILNDHELLDRYLQSFVDR--PLCQLDCVEWAILRLGTYELLNCSE 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P +VI++E + +A F D K++N +L +++ K
Sbjct: 105 IPYKVILNEAIELAKMFGATDSYKYVNGILHRIAEKNRA 143
>gi|261867676|ref|YP_003255598.1| transcription antitermination protein NusB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413008|gb|ACX82379.1| transcription antitermination factor NusB [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 141
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AVQALY I S + + T E VD +FR
Sbjct: 6 KKISPRRRARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ ++ + +D + L + LD I +ILR V EL +VP +V+I+E
Sbjct: 55 KLFRQTVENVEAVDATMQCYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F + K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136
>gi|325525004|gb|EGD02919.1| transcription antitermination protein NusB [Burkholderia sp. TJI49]
Length = 145
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + S+ EI D +L Y D
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKALL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + ++ + +L + ++L EL P VII+E
Sbjct: 49 DAILHGVIREHATLVEALTP--SLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|84502770|ref|ZP_01000889.1| transcription antitermination factor NusB [Oceanicola batsensis
HTCC2597]
gi|84389165|gb|EAQ01963.1| transcription antitermination factor NusB [Oceanicola batsensis
HTCC2597]
Length = 166
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 10/157 (6%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ ++ +K +RL AVQAL+Q++ IG + +I+E+E +RF A E D
Sbjct: 17 NQRRKMK-----SASRLYAVQALFQMEAIGQTVERVIAEFEDHRFGAVYEGDE---MAEG 68
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D++ FR + ++ + ID + L KW +R+D L ++ RA EL++ P +
Sbjct: 69 DIDLFRATMADAVNYQARIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVQSD-TPPK 127
Query: 125 VIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
V+I EYV +A FF EP+F+NAVLD ++R+ +
Sbjct: 128 VVIKEYVDVASAFFPEGREPRFVNAVLDHMAREARPE 164
>gi|237654565|ref|YP_002890879.1| transcription antitermination protein NusB [Thauera sp. MZ1T]
gi|237625812|gb|ACR02502.1| NusB antitermination factor [Thauera sp. MZ1T]
Length = 166
Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 12/154 (7%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+Q +YQ + G + T + E+ +D E
Sbjct: 16 PNPTSKMARRRARELALQGVYQWLLSGNNATTVQRHLES----------ETENLDKIDRE 65
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
F ++ G + L+ + L I +IL G EL P V+I
Sbjct: 66 LFVSLLRGATGAADELRGCFEPLLSR--PVAELSPIEHAILLLGTHELRHNLDTPYRVVI 123
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E + +A + D KF+N VLDK+S + +
Sbjct: 124 NEAIELAKGYGGTDGHKFVNGVLDKLSTRLRPEE 157
>gi|53720238|ref|YP_109224.1| transcription antitermination protein NusB [Burkholderia
pseudomallei K96243]
gi|53725935|ref|YP_103717.1| transcription antitermination protein NusB [Burkholderia mallei
ATCC 23344]
gi|67643981|ref|ZP_00442724.1| transcription antitermination factor NusB [Burkholderia mallei GB8
horse 4]
gi|83718415|ref|YP_442074.1| transcription antitermination protein NusB [Burkholderia
thailandensis E264]
gi|121599031|ref|YP_992107.1| transcription antitermination protein NusB [Burkholderia mallei
SAVP1]
gi|124385249|ref|YP_001028552.1| transcription antitermination protein NusB [Burkholderia mallei
NCTC 10229]
gi|126438627|ref|YP_001060031.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 668]
gi|126448499|ref|YP_001081550.1| transcription antitermination protein NusB [Burkholderia mallei
NCTC 10247]
gi|126452933|ref|YP_001067310.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 1106a]
gi|134280178|ref|ZP_01766889.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 305]
gi|166998350|ref|ZP_02264210.1| transcription antitermination factor NusB [Burkholderia mallei
PRL-20]
gi|167580929|ref|ZP_02373803.1| transcription antitermination protein NusB [Burkholderia
thailandensis TXDOH]
gi|167619020|ref|ZP_02387651.1| transcription antitermination protein NusB [Burkholderia
thailandensis Bt4]
gi|167739782|ref|ZP_02412556.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 14]
gi|167817004|ref|ZP_02448684.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 91]
gi|167825416|ref|ZP_02456887.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 9]
gi|167846905|ref|ZP_02472413.1| transcription antitermination protein NusB [Burkholderia
pseudomallei B7210]
gi|167895484|ref|ZP_02482886.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 7894]
gi|167903866|ref|ZP_02491071.1| transcription antitermination protein NusB [Burkholderia
pseudomallei NCTC 13177]
gi|167912133|ref|ZP_02499224.1| transcription antitermination protein NusB [Burkholderia
pseudomallei 112]
gi|167920107|ref|ZP_02507198.1| transcription antitermination protein NusB [Burkholderia
pseudomallei BCC215]
gi|217420428|ref|ZP_03451933.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 576]
gi|226193837|ref|ZP_03789439.1| transcription antitermination factor NusB [Burkholderia
pseudomallei Pakistan 9]
gi|237813433|ref|YP_002897884.1| transcription antitermination factor NusB [Burkholderia
pseudomallei MSHR346]
gi|242315882|ref|ZP_04814898.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1106b]
gi|254175420|ref|ZP_04882080.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
10399]
gi|254191824|ref|ZP_04898327.1| transcription antitermination factor NusB [Burkholderia
pseudomallei Pasteur 52237]
gi|254196083|ref|ZP_04902508.1| transcription antitermination factor NusB [Burkholderia
pseudomallei S13]
gi|254202417|ref|ZP_04908780.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
gi|254207748|ref|ZP_04914098.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
gi|254261365|ref|ZP_04952419.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1710a]
gi|254298898|ref|ZP_04966348.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 406e]
gi|254356350|ref|ZP_04972626.1| transcription antitermination factor NusB [Burkholderia mallei
2002721280]
gi|257138259|ref|ZP_05586521.1| transcription antitermination protein NusB [Burkholderia
thailandensis E264]
gi|81604460|sp|Q62HV3|NUSB_BURMA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81607761|sp|Q63RP4|NUSB_BURPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119372283|sp|Q2SYC5|NUSB_BURTA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215667|sp|A3MMR4|NUSB_BURM7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215668|sp|A2S9D3|NUSB_BURM9 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215669|sp|A1V1K4|NUSB_BURMS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215670|sp|A3NY89|NUSB_BURP0 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215671|sp|A3NCG0|NUSB_BURP6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|52210652|emb|CAH36636.1| probable N utilization substance protein B [Burkholderia
pseudomallei K96243]
gi|52429358|gb|AAU49951.1| N utilization substance protein B [Burkholderia mallei ATCC 23344]
gi|83652240|gb|ABC36303.1| transcription antitermination factor NusB [Burkholderia
thailandensis E264]
gi|121227841|gb|ABM50359.1| transcription antitermination factor NusB [Burkholderia mallei
SAVP1]
gi|124293269|gb|ABN02538.1| N utilization substance protein B [Burkholderia mallei NCTC 10229]
gi|126218120|gb|ABN81626.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 668]
gi|126226575|gb|ABN90115.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1106a]
gi|126241369|gb|ABO04462.1| transcription antitermination factor NusB [Burkholderia mallei NCTC
10247]
gi|134248185|gb|EBA48268.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 305]
gi|147746664|gb|EDK53741.1| transcription antitermination factor NusB [Burkholderia mallei FMH]
gi|147751642|gb|EDK58709.1| transcription antitermination factor NusB [Burkholderia mallei JHU]
gi|148025347|gb|EDK83501.1| transcription antitermination factor NusB [Burkholderia mallei
2002721280]
gi|157809075|gb|EDO86245.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 406e]
gi|157939495|gb|EDO95165.1| transcription antitermination factor NusB [Burkholderia
pseudomallei Pasteur 52237]
gi|160696464|gb|EDP86434.1| transcription antitermination factor NusB [Burkholderia mallei ATCC
10399]
gi|169652827|gb|EDS85520.1| transcription antitermination factor NusB [Burkholderia
pseudomallei S13]
gi|217395840|gb|EEC35857.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 576]
gi|225934142|gb|EEH30127.1| transcription antitermination factor NusB [Burkholderia
pseudomallei Pakistan 9]
gi|237505806|gb|ACQ98124.1| transcription antitermination factor NusB [Burkholderia
pseudomallei MSHR346]
gi|238525458|gb|EEP88886.1| transcription antitermination factor NusB [Burkholderia mallei GB8
horse 4]
gi|242139121|gb|EES25523.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1106b]
gi|243065419|gb|EES47605.1| transcription antitermination factor NusB [Burkholderia mallei
PRL-20]
gi|254220054|gb|EET09438.1| transcription antitermination factor NusB [Burkholderia
pseudomallei 1710a]
Length = 145
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + + EI D +L Y D
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + IS + +L + ++L EL P VII+E
Sbjct: 49 DTILHGVIREHATLAEAISP--SLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVKLRPAET 139
>gi|296161946|ref|ZP_06844746.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
gi|295887822|gb|EFG67640.1| NusB antitermination factor [Burkholderia sp. Ch1-1]
Length = 144
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLNA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++HGV+ + + I CL +L + ++L EL +P V+I+E V
Sbjct: 50 LLHGVIRDSEALSADIVPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK+S + + +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138
>gi|152998045|ref|YP_001342880.1| NusB antitermination factor [Marinomonas sp. MWYL1]
gi|226738905|sp|A6W2L6|NUSB_MARMS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|150838969|gb|ABR72945.1| NusB antitermination factor [Marinomonas sp. MWYL1]
Length = 174
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 2 TIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
T +KD K S R +R A+QA+YQ + + +EI +++ +D +
Sbjct: 11 TPAPKRKDKKPSRSQLRSASRRLALQAVYQWQMNKTAVSEIETQFV---------IDQDR 61
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D +FR ++ GV + +D L L S LD I +++R G EL +
Sbjct: 62 DMDSCDKVYFRELLQGVTASAKKLDTLFEELLDR--PLSELDPIELAVMRIGSYELSQRL 119
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VP V I+E V +A F + K++N +LDK++++ +
Sbjct: 120 DVPYRVAINESVELAKGFGATESHKYVNGILDKLAQRVRREEIAA 164
>gi|238898983|ref|YP_002924665.1| transcription termination; L factor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|259514851|sp|C4K7H4|NUSB_HAMD5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229466743|gb|ACQ68517.1| transcription termination; L factor [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 151
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ S RR AR VQALY + E+ + + D+ +F
Sbjct: 1 MNPSARRR-ARECVVQALYAWQVSQNDIAEVELSFLA-----------DQETQGADIAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ GV + +D L++ L+ + F L I +ILR + EL + VP +V I+E
Sbjct: 49 RHVLLGVASDVEALDTLMTPYLSRQ--FQELGQIEKAILRLAMFELNKRDDVPYKVTINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ + F D KFIN VLDK +
Sbjct: 107 AIELGKTFGADDSHKFINGVLDKAA 131
>gi|134094270|ref|YP_001099345.1| transcription termination, L factor (N utilization substance
protein B) [Herminiimonas arsenicoxydans]
gi|133738173|emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB)
[Herminiimonas arsenicoxydans]
Length = 156
Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT + + + + R AR A+Q LYQ + I + +
Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTI-----------ENHIRQAH 49
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D E F +++G + + + ++ + + S L + + L G EL
Sbjct: 50 GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS---RKEEI 159
+P +V+I+E V + F D K++N VLDK + R+ EI
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAAGVREPEI 150
>gi|167720799|ref|ZP_02404035.1| transcription antitermination protein NusB [Burkholderia
pseudomallei DM98]
Length = 145
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + + EI D +L Y D
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + IS + +L + ++L EL P VII+E
Sbjct: 49 DTILHGVIREHATLAEAISP--SLDRPIEQLSPVERAVLLIATYELTHQIETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAVKLRPAET 139
>gi|257893505|ref|ZP_05673158.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
gi|257829884|gb|EEV56491.1| transcription antiterminator NusB [Enterococcus faecium 1,231,408]
Length = 152
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 3/155 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ +K + R R A+QAL+ +D + D +
Sbjct: 1 MKTKRKRMNKELSRHEIREMALQALFPLDFN---ADLTKEDAIFNAIELDHRDMINEDES 57
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ ++ GV +K +D +I L W +R+ + ILR + E+ VP
Sbjct: 58 EFVPVYLDTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVP 117
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
V ++E + +A F KF+N VL V ++
Sbjct: 118 AAVALNEAIELAKTFSDDRSRKFVNGVLSNVLKEL 152
>gi|330959944|gb|EGH60204.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 165
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID ++ CL + LD I ++LR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVATNQAEIDAALTPCLDL--TIEELDPIELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKVYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|331006273|ref|ZP_08329591.1| Transcription termination protein NusB [gamma proteobacterium
IMCC1989]
gi|330419920|gb|EGG94268.1| Transcription termination protein NusB [gamma proteobacterium
IMCC1989]
Length = 152
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 7 KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
KK R AR +QALYQ + G + EI +E+ V++ H
Sbjct: 2 KKPPAKVSPATRRKARHFGMQALYQWSMTGAALNEIEAEF-----------HVDNDMTHT 50
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D ++F ++H + R +D L + S LD + S+LR EL VP +
Sbjct: 51 DTDYFHELVHEIPARVTELDEAYFPHL-QDRSVEELDPVTLSLLRLATYELAHRIDVPYK 109
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V+I+E V +A F D KFIN VLDK++
Sbjct: 110 VVINEAVSLAKKFGATDSFKFINGVLDKLAVSLRAVE 146
>gi|295695401|ref|YP_003588639.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
gi|295411003|gb|ADG05495.1| NusB antitermination factor [Bacillus tusciae DSM 2912]
Length = 148
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR +QAL +D+ G E + + R + E D ++ R ++
Sbjct: 2 SRRAAREKVLQALVAVDLGGTDAEEALEQVWRLRGDEE----AEGDPSPEDADFARGLLF 57
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + +D ++ + W R+ + ++LR V EL+ + PV V+++E V +A
Sbjct: 58 GTLEEGRRVDGVL-RTYSTGWDLDRMASVDRNVLRLAVYELLHVPATPVSVVMNEAVELA 116
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ + +F+N VL ++ E R+
Sbjct: 117 KRYSTEESGRFVNGVLARIVAHLEELRT 144
>gi|171059618|ref|YP_001791967.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
gi|170777063|gb|ACB35202.1| NusB antitermination factor [Leptothrix cholodnii SP-6]
Length = 171
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R +R A+Q LY+ + + + + + + + D F
Sbjct: 24 PRPKSARRRSRELALQGLYEWQVGQADSHVVEAH-----------MREQEDHAKCDTAHF 72
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++HG + + +D +++ L L + +L G EL C VP +V I+E
Sbjct: 73 SALLHGCIAQVAALDAVLTPHLDR--RVQELSPVEHGVLLIGAYELQHCLDVPYKVAINE 130
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V +A F D K++N VLDK +
Sbjct: 131 AVELAKSFGGTDGHKYVNGVLDKAAADLRPAEVAA 165
>gi|187925077|ref|YP_001896719.1| transcription antitermination protein NusB [Burkholderia
phytofirmans PsJN]
gi|238689481|sp|B2T6D1|NUSB_BURPP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|187716271|gb|ACD17495.1| NusB antitermination factor [Burkholderia phytofirmans PsJN]
Length = 144
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVIRDSEALSAAIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK+S + + +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLSAQLRVDET 138
>gi|134294984|ref|YP_001118719.1| transcription antitermination protein NusB [Burkholderia
vietnamiensis G4]
gi|166215672|sp|A4JC81|NUSB_BURVG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|134138141|gb|ABO53884.1| NusB antitermination factor [Burkholderia vietnamiensis G4]
Length = 145
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + S+ EI D +L Y D E
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKELLEA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + I+ + +L + ++L EL P VII+E V
Sbjct: 51 ILHGVIREHATLVEAITP--SLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D K++N VLDK++ K +
Sbjct: 109 ELTKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|107022034|ref|YP_620361.1| transcription antitermination protein NusB [Burkholderia
cenocepacia AU 1054]
gi|116688978|ref|YP_834601.1| transcription antitermination protein NusB [Burkholderia
cenocepacia HI2424]
gi|170732269|ref|YP_001764216.1| transcription antitermination protein NusB [Burkholderia
cenocepacia MC0-3]
gi|206561400|ref|YP_002232165.1| transcription antitermination protein NusB [Burkholderia
cenocepacia J2315]
gi|254246083|ref|ZP_04939404.1| Transcription termination factor [Burkholderia cenocepacia PC184]
gi|119372281|sp|Q1BYB7|NUSB_BURCA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215666|sp|A0K5D1|NUSB_BURCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238688594|sp|B1JX75|NUSB_BURCC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238693104|sp|B4EBT9|NUSB_BURCJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|105892223|gb|ABF75388.1| NusB antitermination factor [Burkholderia cenocepacia AU 1054]
gi|116647067|gb|ABK07708.1| NusB antitermination factor [Burkholderia cenocepacia HI2424]
gi|124870859|gb|EAY62575.1| Transcription termination factor [Burkholderia cenocepacia PC184]
gi|169815511|gb|ACA90094.1| NusB antitermination factor [Burkholderia cenocepacia MC0-3]
gi|198037442|emb|CAR53377.1| probable N utilization substance protein B [Burkholderia
cenocepacia J2315]
Length = 145
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + + EI D +L Y D E
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNAPSGEI-----------DAQLRGALGYDKADKELLEA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + ++ + +L + ++L EL P VII+E V
Sbjct: 51 ILHGVIREHATLVEALAP--SLDRPIDQLSPVERAVLLIATFELTHHVETPYRVIINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K +
Sbjct: 109 ELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|158522086|ref|YP_001529956.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
gi|226738897|sp|A8ZTU6|NUSB_DESOH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|158510912|gb|ABW67879.1| NusB antitermination factor [Desulfococcus oleovorans Hxd3]
Length = 154
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+Q L+ D+ + + E + + F +
Sbjct: 1 MASRRRSRELALQFLFSYDLNAAGAGDFDAWMEDF--------CARFNLSEKNFPHFFTL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV +R + ++ L++ +E W SR+ + +++R + E++ C VP V I+E +
Sbjct: 53 AQGVKNRWEKLNDLLAES-SEHWKLSRMSGVDRNVMRIAIFEMLYCDDVPPRVAINEAIE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
I + + FIN VLD+++++ +
Sbjct: 112 IGKKYGTDESGAFINGVLDRINKELGGSEADLPE 145
>gi|315125804|ref|YP_004067807.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
gi|315014318|gb|ADT67656.1| transcription termination factor [Pseudoalteromonas sp. SM9913]
Length = 137
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR+ A+QA+Y + G + +I + +E+ +D+E+F
Sbjct: 1 MKPAA-RRKARILALQAVYSWQLSGNAIADIEQQML-----------IENDVTKIDVEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV + +D +S LT F LD + +ILR EL VP +V I+E
Sbjct: 49 KDLARGVAVNHKQLDEAVSPHLTR--PFDELDEVERAILRLSSYELKFREDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +A F D KF+N VLDK ++
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKQLR 135
>gi|307730712|ref|YP_003907936.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
gi|307585247|gb|ADN58645.1| NusB antitermination factor [Burkholderia sp. CCGE1003]
Length = 144
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVIRDSEALSADIAPCLDR--PIDQLSPVERAVLLVAAFELKNHIDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K +
Sbjct: 108 ELAKTFGGADGYKYVNGVLDKLAAKIRAAET 138
>gi|77361286|ref|YP_340861.1| transcription termination factor [Pseudoalteromonas haloplanktis
TAC125]
gi|119390799|sp|Q3II29|NUSB_PSEHT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|76876197|emb|CAI87419.1| transcription termination factor [Pseudoalteromonas haloplanktis
TAC125]
Length = 136
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR+ A+QA+Y + G + +I + +E+ +D+E+F
Sbjct: 1 MKPAA-RRKARILALQAIYSWQLSGNAIADIEQQML-----------IENDVTKIDVEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV + +D +S LT F LDM+ +ILR EL VP +V I+E
Sbjct: 49 KDLASGVAVNYKQLDEAVSPHLTR--PFDELDMVERAILRLSSYELKFREDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +A F D KF+N VLDK +
Sbjct: 107 SIELAKMFGAEDSHKFVNGVLDKAVKHLR 135
>gi|331018230|gb|EGH98286.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. lachrymans str. M302278PT]
Length = 165
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G + EI +++
Sbjct: 6 TDQFNPRDAKSPEIAKGKSAKRREARQMATQALYQRHMAGHALNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +FR ++HGV + ID ++SCL + LD I +ILR E
Sbjct: 56 -RVDNDFSNVDGTYFRELLHGVAINQTEIDTALTSCLDL--TIEELDPIELAILRLSTFE 112
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L++ VP V+I+E + +A + D KF+N VLDK++ +
Sbjct: 113 LLKRIDVPYRVVINEGIELAKIYGSTDGHKFVNGVLDKLAPRLREVE 159
>gi|269836410|ref|YP_003318638.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
gi|269785673|gb|ACZ37816.1| NusB antitermination factor [Sphaerobacter thermophilus DSM 20745]
Length = 140
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R AR A+Q LY+ D+ +++++ Y + +
Sbjct: 1 MSVGTIRHQARTLALQILYEADVAQHPASDVLARY-----------TSDLSLPQPVRRYV 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+I GVM+ + ID I + + +L I +ILR + EL H VPV+ I+E
Sbjct: 50 ERLISGVMEDLEKIDAEIGAA-APAFPVDQLPPIDRNILRIAIYELRNEHDVPVKAAINE 108
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
V +A F + +F+N VL ++
Sbjct: 109 AVELAKRFGGDNSSRFVNGVLGTIA 133
>gi|109897640|ref|YP_660895.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
gi|119390797|sp|Q15W97|NUSB_PSEA6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|109699921|gb|ABG39841.1| NusB antitermination factor [Pseudoalteromonas atlantica T6c]
Length = 140
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQA+Y + +I + + + VD E+F
Sbjct: 1 MKPAA-RRKARELAVQAVYSWQMSKNPLDQI-----------ELSIVTSNNMQDVDTEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ V+ R +D I L LD + +ILR EL+E VP +V+I+E
Sbjct: 49 LELLRAVVRRTAELDAKIKPYLGRLP--EELDPVENAILRLATYELVERIDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F + KF+N VLDK +
Sbjct: 107 AIELAKSFGAEESHKFVNGVLDKAIKTLRKHE 138
>gi|269138332|ref|YP_003295032.1| transcription termination factor [Edwardsiella tarda EIB202]
gi|267983992|gb|ACY83821.1| transcription termination factor [Edwardsiella tarda EIB202]
gi|304558364|gb|ADM41028.1| Transcription termination protein NusB [Edwardsiella tarda FL6-60]
Length = 139
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 DYLDGLMAPVLSRQ--LEELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ + R
Sbjct: 118 DSHKFVNGVLDKVAPQVRPNR 138
>gi|293392266|ref|ZP_06636600.1| transcription antitermination factor NusB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952800|gb|EFE02919.1| transcription antitermination factor NusB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 141
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AVQALY I S + + T E VD +FR
Sbjct: 6 KKISPRRRARECAVQALYSWAISKNSPEIVELNFIT-----------EQDMKGVDTPYFR 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ ++ + +D + L + LD I +ILR V EL +VP +V+I+E
Sbjct: 55 KLFRQTVENVEAVDATMQYYLDR--TLEELDPIEKAILRLAVYELQFEANVPYKVVINEA 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F + K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136
>gi|167586433|ref|ZP_02378821.1| NusB antitermination factor [Burkholderia ubonensis Bu]
Length = 145
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + S+ EI D +L Y D +
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNASSGEI-----------DAQLRGALGYDKADKDLL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + ++ CL +L I ++L EL P VII+E
Sbjct: 49 DAILHGVIREHATLAEALTPCLDR--PIDQLSPIERAVLLIATFELTHHVETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V + F D K++N VLDK++ K +
Sbjct: 107 AVELTKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|329113506|ref|ZP_08242287.1| N utilization substance protein B-like protein [Acetobacter pomorum
DM001]
gi|326697331|gb|EGE48991.1| N utilization substance protein B-like protein [Acetobacter pomorum
DM001]
Length = 174
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 1 MTIQDNKKDLKLS-HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC--ADTELDV 57
MT ++ LK + R AR+AAVQAL+QID G +I ++ +RF D
Sbjct: 1 MTELQDEPRLKGAQRPRTAARVAAVQALFQIDQNGDRPENVIEQFLVHRFGTTLDGASYE 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ D + F I+ V + + + L E W +RLD +L ++L A E E
Sbjct: 61 DGCIPEADTQLFSHIVRLVTSLRTQVTQEVEKTLPETWPIARLDPVLRALLLAAAAEATE 120
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P V+I+EY+ +AH FF GDEP+ +N VLD + ++ +R+
Sbjct: 121 GD-APAPVLINEYMDVAHAFFSGDEPRLVNGVLDTLFKRLAAERN 164
>gi|318057074|ref|ZP_07975797.1| transcription antitermination protein NusB [Streptomyces sp.
SA3_actG]
gi|318080976|ref|ZP_07988308.1| transcription antitermination protein NusB [Streptomyces sp.
SA3_actF]
gi|333028359|ref|ZP_08456423.1| putative transcription antitermination protein NusB [Streptomyces
sp. Tu6071]
gi|332748211|gb|EGJ78652.1| putative transcription antitermination protein NusB [Streptomyces
sp. Tu6071]
Length = 144
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRGDTQQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V
Sbjct: 53 VEGYAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+A +F D P F+N +L + + + + G V
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRF-KNLKPELRGPVD 144
>gi|329119641|ref|ZP_08248322.1| transcription antitermination factor NusB [Neisseria bacilliformis
ATCC BAA-1200]
gi|327464238|gb|EGF10542.1| transcription antitermination factor NusB [Neisseria bacilliformis
ATCC BAA-1200]
Length = 142
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 13/147 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQALYQ + G S ++ + S Y D E F
Sbjct: 2 KTSPRRRAREFAVQALYQCALNGASAVQVAQN-----------IREASDYPRADGELFTA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G D I L ++ + +IL EL P VII+E +
Sbjct: 51 LFFGAHDNGGEYMQRIRPLLDRDE--KDINPVERAILLMACHELAAMPETPYPVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ + D KF+N +LD+++ +
Sbjct: 109 EVTKTYGGTDSHKFVNGILDRLAAELR 135
>gi|332534974|ref|ZP_08410792.1| transcription termination protein NusB [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035592|gb|EGI72084.1| transcription termination protein NusB [Pseudoalteromonas
haloplanktis ANT/505]
Length = 136
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR+ A+QA+Y I G +I + +E+ +D+E+F
Sbjct: 1 MKPAA-RRKARILALQAVYSWQISGNLIADIEQQML-----------IETDVTKIDVEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV + +D +S LT F LDM+ +ILR EL VP +V I+E
Sbjct: 49 KDLATGVAVNYKQLDEAVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +A F D KF+N VLDK +
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVKHLR 135
>gi|257456352|ref|ZP_05621549.1| transcription antitermination factor NusB [Treponema vincentii ATCC
35580]
gi|257446438|gb|EEV21484.1| transcription antitermination factor NusB [Treponema vincentii ATCC
35580]
Length = 147
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R+ A QALY D S +++ R + D + ++
Sbjct: 1 MAIGRRRGRILAFQALYAWDAGSLSPDDLLPFPWVERTGKE--------LHDEDFLFSQL 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G ++ ID LI+ L E W F+RL ++ +ILR G L+ ++I+E V
Sbjct: 53 LFLGAVEHIDEIDGLIAKNL-ENWDFNRLKLVDKAILRLGTYSLLFQQDTDPRIVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + D KF+NAVLD + R+
Sbjct: 112 TIARIYGTDDSFKFVNAVLDSIKRE 136
>gi|332977564|gb|EGK14334.1| N utilization substance protein B [Desmospora sp. 8437]
Length = 148
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 9/153 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A+Q LYQ +I R + +F ++
Sbjct: 2 SRRTVREKALQTLYQNEINPDGAD---------RSMKKEARSLHDEAGEEASAFFLRLVR 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+ +D +I L + W+ SRL + SILR V EL+ +P ++E V +A
Sbjct: 53 TVIRNMPRLDPVIQGYLKQDWTLSRLSPVDRSILRMAVCELLYEEEIPEGASLNEAVELA 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F + +FIN VL + + + R VS
Sbjct: 113 KTFSTEESARFINGVLGSMVKNLDEVRKSAVSG 145
>gi|239905097|ref|YP_002951836.1| N utilization substance protein B homolog [Desulfovibrio magneticus
RS-1]
gi|239794961|dbj|BAH73950.1| N utilization substance protein B homolog [Desulfovibrio magneticus
RS-1]
Length = 159
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT D+KK + R AR A + LY G S E R DV
Sbjct: 1 MTESDDKKPIV---SRRKARKQAFEFLY-----GLSFEPAADERSLLRLFKRCPHDVAEG 52
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
E+ ++ GV ++ ID I ++ W SR+ + +ILR V E++
Sbjct: 53 EDDAGHEFAWELVLGVWRNQRDIDATIVRF-SKNWKISRIAKVELTILRLAVHEILSRPD 111
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P+ V ++E + ++ + + FIN +LD +++ + G
Sbjct: 112 IPLRVSLNEAIELSKRYGDENSRNFINGILDALAKAVDSGEFG 154
>gi|115350870|ref|YP_772709.1| transcription antitermination protein NusB [Burkholderia ambifaria
AMMD]
gi|170702886|ref|ZP_02893730.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171321369|ref|ZP_02910324.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
gi|172059882|ref|YP_001807534.1| transcription antitermination protein NusB [Burkholderia ambifaria
MC40-6]
gi|122323813|sp|Q0BHJ8|NUSB_BURCM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689186|sp|B1YUJ1|NUSB_BURA4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|115280858|gb|ABI86375.1| NusB antitermination factor [Burkholderia ambifaria AMMD]
gi|170132203|gb|EDT00687.1| NusB antitermination factor [Burkholderia ambifaria IOP40-10]
gi|171093347|gb|EDT38540.1| NusB antitermination factor [Burkholderia ambifaria MEX-5]
gi|171992399|gb|ACB63318.1| NusB antitermination factor [Burkholderia ambifaria MC40-6]
Length = 145
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R +R A Q LYQ + + EI D +L Y D E
Sbjct: 1 MKKSA-RRQSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKELL 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+HGV+ + ++ + +L + ++L EL P VII+E
Sbjct: 49 DAILHGVIREHATLIEALTP--SLDRPVDQLSPVERAVLLIATFELTHHVETPYRVIINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A F D K++N VLDK++ K +
Sbjct: 107 AVELAKTFGGSDGYKYVNGVLDKLAAKLRPAET 139
>gi|125973352|ref|YP_001037262.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
gi|256005458|ref|ZP_05430421.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
gi|281417552|ref|ZP_06248572.1| NusB antitermination factor [Clostridium thermocellum JW20]
gi|166215686|sp|A3DDP0|NUSB_CLOTH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|125713577|gb|ABN52069.1| NusB antitermination factor [Clostridium thermocellum ATCC 27405]
gi|255990598|gb|EEU00717.1| NusB antitermination factor [Clostridium thermocellum DSM 2360]
gi|281408954|gb|EFB39212.1| NusB antitermination factor [Clostridium thermocellum JW20]
gi|316940416|gb|ADU74450.1| NusB antitermination factor [Clostridium thermocellum DSM 1313]
Length = 145
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R A++ +YQ++I S E I+ D E+ ++ G
Sbjct: 3 RRASREIAMKLIYQLEIQKDSREEQINNTLEQY-----------DLNENDREYILDVVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ++ ID I ++ W SR+ + +ILR + E+ +P V I+E V +A
Sbjct: 52 VFKNQEEIDGTIEKF-SKGWKLSRISKVDLAILRLAIYEMCHRDDIPFTVAINEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSR 155
++ + FIN +L KV +
Sbjct: 111 NYSGEESGSFINGILGKVVK 130
>gi|260772216|ref|ZP_05881132.1| transcription termination protein NusB [Vibrio metschnikovii CIP
69.14]
gi|260611355|gb|EEX36558.1| transcription termination protein NusB [Vibrio metschnikovii CIP
69.14]
Length = 156
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVI 72
R AR A+QA+Y I + I ++ + + E L D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALSAPQTDVTYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LVGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|317490198|ref|ZP_07948686.1| transcription antitermination factor NusB [Eggerthella sp.
1_3_56FAA]
gi|316910692|gb|EFV32313.1| transcription antitermination factor NusB [Eggerthella sp.
1_3_56FAA]
Length = 200
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ +R AR AA+Q LY +I S I E D E+
Sbjct: 1 MAAKRHERTSARRAALQVLYTSEITDESPAAI------------AEGDRRLEEDGPLPEY 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++ GV + ID +++ +E WS +R+ ++ SILR E++ VP V I+
Sbjct: 49 ALMLVRGVESHRIAIDNHLAAT-SENWSLARMPIVDRSILRLATFEMMYIDDVPTSVTIN 107
Query: 129 EYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAIT 169
E V +A DF D +F+N +L ++++ E + A +
Sbjct: 108 EAVELAKDFGGEDESHRFVNGILGRIAKMLEGEEGQEADAPS 149
>gi|254360609|ref|ZP_04976758.1| N utilization substance B [Mannheimia haemolytica PHL213]
gi|261493373|ref|ZP_05989899.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496639|ref|ZP_05993019.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153091149|gb|EDN73154.1| N utilization substance B [Mannheimia haemolytica PHL213]
gi|261307842|gb|EEY09165.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311017|gb|EEY12194.1| N utilization substance B [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 137
Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K+S R AR AVQA+Y I + E+ + T + VD+ +F
Sbjct: 1 MKIS-PRRRARECAVQAIYSWYISQNTVEEVELAFVT-----------DQDMKGVDMPYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + GV+D + ID + L S +D I SILR EL H VP V+I+E
Sbjct: 49 RKLFRGVVDNVEAIDEALRPYLDR--KESDVDPIERSILRLSTYELKFEHDVPFRVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F D K+IN +LDK++
Sbjct: 107 GIEVAKVFGSDDSHKYINGILDKLA 131
>gi|84394359|ref|ZP_00993080.1| transcription antitermination protein NusB [Vibrio splendidus
12B01]
gi|86147433|ref|ZP_01065745.1| transcription antitermination protein NusB [Vibrio sp. MED222]
gi|148976613|ref|ZP_01813300.1| transcription antitermination protein NusB [Vibrionales bacterium
SWAT-3]
gi|218710372|ref|YP_002417993.1| transcription antitermination protein NusB [Vibrio splendidus
LGP32]
gi|254772666|sp|B7VJA4|NUSB_VIBSL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|84375018|gb|EAP91944.1| transcription antitermination protein NusB [Vibrio splendidus
12B01]
gi|85834726|gb|EAQ52872.1| transcription antitermination protein NusB [Vibrio sp. MED222]
gi|145963964|gb|EDK29222.1| transcription antitermination protein NusB [Vibrionales bacterium
SWAT-3]
gi|218323391|emb|CAV19568.1| N utilization substance protein B homolog [Vibrio splendidus LGP32]
Length = 155
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + + ++ + Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENIATVEEQFLSGGKYDEEEHHAAEPALAMPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV +D + ++ LD++ ++LR + E+ VP +V+I+E +
Sbjct: 70 LTGVALSHMELDSKLRPFVSR--PMQDLDLMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|119472104|ref|ZP_01614335.1| transcription termination factor [Alteromonadales bacterium TW-7]
gi|119445124|gb|EAW26417.1| transcription termination factor [Alteromonadales bacterium TW-7]
Length = 136
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR+ A+QA+Y + G + +I + +E+ +D+E+F
Sbjct: 1 MKPAA-RRKARILALQAVYSWQLSGNAIADIEQQML-----------IENDVTKIDVEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + GV + +D +S LT F LDM+ +ILR EL VP +V I+E
Sbjct: 49 KDLASGVAVNYKLLDESVSPHLTR--PFDDLDMVERAILRLSSYELKFREDVPYKVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +A F D KF+N VLDK +
Sbjct: 107 GIELAKIFGAEDSHKFVNGVLDKAVKHLR 135
>gi|296136867|ref|YP_003644109.1| NusB antitermination factor [Thiomonas intermedia K12]
gi|294341036|emb|CAZ89431.1| putative NusB antitermination factor [Thiomonas sp. 3As]
gi|295796989|gb|ADG31779.1| NusB antitermination factor [Thiomonas intermedia K12]
Length = 202
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q +Y+ + G T I + +D + F+
Sbjct: 7 PKSARRKSRELAFQGIYEWLLAGSDTGAIEAFLHERYPTI-----------KLDDDHFQS 55
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++HG + +D LI + + S L + ++L G EL VP V+I+E V
Sbjct: 56 LLHGALAEAGPLDALIQPHIDRQTS--ELSPVEHALLLMGAFELQRHLDVPYRVVINEAV 113
Query: 132 CIAHDFFYGDEPKFINAVLDKVS---RKEEIKRSGCVSAITQ 170
+ + D K++N VLD+++ RK E++ + Q
Sbjct: 114 ELGKVYGGTDGYKYVNGVLDRIAAQLRKTEVEAANQSHPQAQ 155
>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
Length = 453
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A+Q L +++ E Y A +D + I +
Sbjct: 2 KKVTARDLALQVL-----------KVVEEEGAYANLALNRYLELYQPGKLDRAFATEITY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ID +++ L + + + + +ILR G +++ VP +E V +A
Sbjct: 51 GVLRNLNTIDWVLAHFLKQ--PLAAQTVWVRNILRMGTYQIMFMPRVPDSAACNESVELA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + KF+N VL V+R++
Sbjct: 109 KKYGHTGAAKFVNGVLRNVARQQ 131
>gi|32034438|ref|ZP_00134620.1| COG0781: Transcription termination factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207689|ref|YP_001052914.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae L20]
gi|165975657|ref|YP_001651250.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149473|ref|YP_001967998.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307245014|ref|ZP_07527111.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247188|ref|ZP_07529239.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307249415|ref|ZP_07531406.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307251733|ref|ZP_07533637.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307253967|ref|ZP_07535819.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256228|ref|ZP_07538015.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258422|ref|ZP_07540163.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260660|ref|ZP_07542352.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307262792|ref|ZP_07544419.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|166215658|sp|A3MYS3|NUSB_ACTP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238687518|sp|B0BSK4|NUSB_ACTPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238692374|sp|B3H044|NUSB_ACTP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|126096481|gb|ABN73309.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875758|gb|ABY68806.1| transcription termination factor [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189914604|gb|ACE60856.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306854179|gb|EFM86387.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856326|gb|EFM88478.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306858557|gb|EFM90622.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860819|gb|EFM92828.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306863171|gb|EFM95113.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865409|gb|EFM97305.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867606|gb|EFM99453.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869737|gb|EFN01522.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871937|gb|EFN03654.1| N utilization substance protein B [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 137
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR AVQALY + S E+ + T + VDL +FR
Sbjct: 2 KVSPRRRARECAVQALYSWYVSQNSVEEVELSFVT-----------DQDMNGVDLPYFRK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G + + ID + L +D I +ILR EL VP +V+I+E +
Sbjct: 51 LLRGTVLYVEAIDNDLRPFLDRAED--EVDPIERTILRLSAYELKYELDVPYKVVINEGI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A F D K+IN +LDK++
Sbjct: 109 EVAKVFGSDDSHKYINGILDKLA 131
>gi|313201935|ref|YP_004040593.1| nusb antitermination factor [Methylovorus sp. MP688]
gi|312441251|gb|ADQ85357.1| NusB antitermination factor [Methylovorus sp. MP688]
Length = 158
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ D K K +K S R +R A++ +Y+ + I+ EL
Sbjct: 1 MSDTDQKPGDAKPVKASRNRRKSRELALKGIYRNLLNQADFRAILR-----------ELA 49
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
E + D E+ R ++ GV+ ++ +D I+ + L I IL ELI
Sbjct: 50 DEPEFDKADQEYLRKLLDGVLAEREELDRRIAVFVDR--PMQELSPIEHGILCLSAYELI 107
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
S+P V I+E V +A + D K++N VLDK++ +
Sbjct: 108 FDLSIPYRVAINEGVELAKIYGGTDGHKYVNGVLDKLAAEARPGE 152
>gi|28897457|ref|NP_797062.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
RIMD 2210633]
gi|153840491|ref|ZP_01993158.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ3810]
gi|260364269|ref|ZP_05776968.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
K5030]
gi|260876417|ref|ZP_05888772.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AN-5034]
gi|260898688|ref|ZP_05907184.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
Peru-466]
gi|260899217|ref|ZP_05907612.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ4037]
gi|31076798|sp|Q87RU3|NUSB_VIBPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28805669|dbj|BAC58946.1| N utilization substance protein B [Vibrio parahaemolyticus RIMD
2210633]
gi|149745845|gb|EDM56975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ3810]
gi|308086855|gb|EFO36550.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
Peru-466]
gi|308092966|gb|EFO42661.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AN-5034]
gi|308106640|gb|EFO44180.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
AQ4037]
gi|308113746|gb|EFO51286.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
K5030]
Length = 155
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVI 72
R AR A+QA+Y I + I ++ + + EL D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDVAYFREL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D I ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|251792444|ref|YP_003007170.1| transcription antitermination protein NusB [Aggregatibacter
aphrophilus NJ8700]
gi|247533837|gb|ACS97083.1| transcription antitermination factor NusB [Aggregatibacter
aphrophilus NJ8700]
Length = 141
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AVQALY I S + + T E VD +FR
Sbjct: 6 KKISPRRRARECAVQALYSWAISQNSPELVELNFMT-----------EQDMNGVDKPYFR 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ ++ ++ + L + LD I +ILR V EL VP +V+I+E
Sbjct: 55 KLFRQTVENVDAVEHTMQGYLDR--TLDELDPIEKAILRLAVYELQFEADVPYKVVINEA 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F + K+IN VLDK++
Sbjct: 113 IEVAKVFGADESHKYINGVLDKIA 136
>gi|94676751|ref|YP_589030.1| transcription antitermination protein NusB [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|119372277|sp|Q1LSN4|NUSB_BAUCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|94219901|gb|ABF14060.1| transcription antitermination factor NusB [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 139
Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K++ RR AR AVQALY + + +I +++ E +D+ +F
Sbjct: 1 MKITARRR-ARECAVQALYSWQLSNNNIADIEAQFLA-----------EQDIKGIDVAYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R + G +D L+ L+ +L + ++LR + EL + +P V I+E
Sbjct: 49 RELYSGTAIAADMLDQLMVPYLSR--PLDKLGHVERAVLRLALYELSKRQDIPYRVAINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F D KFIN VL+K + + R
Sbjct: 107 AIELAKTFGAEDSYKFINGVLEKTASQIRPHR 138
>gi|167837551|ref|ZP_02464434.1| transcription antitermination protein NusB [Burkholderia
thailandensis MSMB43]
Length = 145
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + + EI D +L Y D
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLLDT 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + IS + +L + ++L EL P VII+E V
Sbjct: 51 ILHGVIREHATLAEAISP--SLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK++ K +
Sbjct: 109 ELAKTFGGSDGYKYVNGVLDKLAVKLRPAET 139
>gi|315646327|ref|ZP_07899447.1| NusB antitermination factor [Paenibacillus vortex V453]
gi|315278526|gb|EFU41842.1| NusB antitermination factor [Paenibacillus vortex V453]
Length = 152
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 2/147 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR VQ+LYQ+++ + E +S + + V + + E+ +++
Sbjct: 2 KRRVAREIVVQSLYQMEMNEVDSMEAVSMLLSEAAEENETERVIGDEVQM-KEYVLQLVN 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K+ ID L++ L W SRL + ILR V EL VP +V ++E + ++
Sbjct: 61 GTWESKESIDELLAHYLKG-WQVSRLSRVDRQILRLAVYELSSREDVPGKVAVNEAIELS 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F + KF+N VL ++ ++ + +
Sbjct: 120 KHFGTDESGKFVNGVLGRMIQELDQVK 146
>gi|302541095|ref|ZP_07293437.1| transcription antitermination factor NusB [Streptomyces
hygroscopicus ATCC 53653]
gi|302458713|gb|EFL21806.1| transcription antitermination factor NusB [Streptomyces
himastatinicus ATCC 53653]
Length = 152
Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ + D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGSSVQTVLADWIRHARTDDRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID L+ + W+ R+ ++ +ILR G EL+ + P V+I E V
Sbjct: 53 VEGYAEHTARIDELL-ATYAVGWTLDRMPVVDRNILRLGAYELVWEDATPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A +F D P F+N +L ++ + R + ++
Sbjct: 112 LAKEFSTDDSPSFVNGLLGRLKELKPGLRRDTETEDSE 149
>gi|330815784|ref|YP_004359489.1| NusB antitermination factor [Burkholderia gladioli BSR3]
gi|327368177|gb|AEA59533.1| NusB antitermination factor [Burkholderia gladioli BSR3]
Length = 144
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 13/153 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + ST EI D +L Y D E
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYEKADRELLET 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ + +++ L +L + ++L EL P V+I+E +
Sbjct: 51 IVYGVVREHADLAAILAPNLDR--PIEQLSPVERAVLLMATFELKHQIETPYRVVINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ F D K++N VLDK++ K + +
Sbjct: 109 ELTKTFGGSDGHKYVNGVLDKLALKLRPEEAAA 141
>gi|296133297|ref|YP_003640544.1| sun protein [Thermincola sp. JR]
gi|296031875|gb|ADG82643.1| sun protein [Thermincola potens JR]
Length = 451
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ +YQ+D G Y A ++ + D + +++G
Sbjct: 2 RSARKLALEVIYQVDREG-----------AYSNIALNKVLEKYQPEKKDRAFITELVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R +D + ++ L + +I+R G+ ++ VP +E V +A
Sbjct: 51 LKRLNTLDWIAGRFVSR--PLDSLTPWIRNIIRMGIYQIFFMDKVPNSAACNESVNLARK 108
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRSGCVSAITQ 170
F + KF+N VL V R K+ +K + +
Sbjct: 109 FGHQGTVKFVNGVLRNVVRHKDRVKWPDKDAEPVE 143
>gi|257885163|ref|ZP_05664816.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
gi|257821015|gb|EEV48149.1| antitermination protein NusB [Enterococcus faecium 1,231,501]
Length = 149
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 3/150 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + D + +
Sbjct: 1 MNKELSRHEIREMALQALFPLDFN---ADLTKEDAIFNAIELDHRDMINEDESEFVPVYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV +K +D +I L W +R+ + +ILR + E+ VP V ++E
Sbjct: 58 DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLAILRIAIFEMTYVTDVPAAVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ +A F KF+N VL V ++ E
Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147
>gi|302389868|ref|YP_003825689.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
gi|302200496|gb|ADL08066.1| NusB antitermination factor [Thermosediminibacter oceani DSM 16646]
Length = 154
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR + L+ ID G + E + ++ V E+ ++
Sbjct: 16 SRKLAREWCFKILFAIDAGGNTIDEAM------------KITVNKPLNEDIREFMLKEVN 63
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+++K+ ID +I + W RL++ +I+R + E+ +P+ V I+E V IA
Sbjct: 64 GVLEKKECIDEIIDEYCVD-WELERLNIADRNIMRLAIYEIFFSDDIPLSVSINEAVEIA 122
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ PKF+N VL ++R E R
Sbjct: 123 KKYGDEKSPKFVNGVLGAIARDREKLR 149
>gi|240170738|ref|ZP_04749397.1| transcription antitermination protein NusB [Mycobacterium kansasii
ATCC 12478]
Length = 174
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K K R AR AV L++ + G S E++ +
Sbjct: 5 KPGKPVKGRHQARKRAVDVLFEAEARGMSPLEVVESRTALAAAKPEVAPLHP-------- 56
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV + HID LI++ L + W+ RL + +ILR V EL+ VP V +
Sbjct: 57 YTAAVARGVSEDAAHIDDLIAAHL-QGWTLDRLPAVDRAILRVSVWELLHADDVPEPVAV 115
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + + P F+N VL +V
Sbjct: 116 DEAVELAKELSTDESPGFVNGVLGQV 141
>gi|84515388|ref|ZP_01002750.1| putative N utilization substance protein B [Loktanella
vestfoldensis SKA53]
gi|84510671|gb|EAQ07126.1| putative N utilization substance protein B [Loktanella
vestfoldensis SKA53]
Length = 155
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MTI +N++ K+ + AR AVQAL+Q++ G + I+ E+E +RF E+ +
Sbjct: 1 MTISNNQRR-KM---KSAARFYAVQALFQMEATGQTVEGIVREFEDHRFG---EIIDDVE 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D++ FR ++ +D + ID + L EKW +R+D ++ RA EL++
Sbjct: 54 LVEGDVDTFRRMMDRAVDLQASIDQMTDRALVEKWPIARIDPTWRALFRAAGAELLDKD- 112
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P +V+ISE+V +A F + EPKF+NAVLD ++R+ + +
Sbjct: 113 TPPKVVISEFVAVAEAFSHDGKEPKFVNAVLDHMARQAQPE 153
>gi|91225065|ref|ZP_01260287.1| transcription antitermination protein NusB [Vibrio alginolyticus
12G01]
gi|262395030|ref|YP_003286884.1| transcription termination protein NusB [Vibrio sp. Ex25]
gi|269965074|ref|ZP_06179239.1| N utilization substance protein B [Vibrio alginolyticus 40B]
gi|91190008|gb|EAS76279.1| transcription antitermination protein NusB [Vibrio alginolyticus
12G01]
gi|262338624|gb|ACY52419.1| transcription termination protein NusB [Vibrio sp. Ex25]
gi|269830377|gb|EEZ84602.1| N utilization substance protein B [Vibrio alginolyticus 40B]
Length = 155
Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVI 72
R AR A+QA+Y I + +I ++ + + EL D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVAKIEEQFLSGDKYDEEELHASEPALAAPETDVAYFREL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D I ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LSGVVLSHAELDSKIRPYISR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A F D KF+N VLDK + K
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAAPHIRKK 155
>gi|254522951|ref|ZP_05135006.1| transcription antitermination factor NusB [Stenotrophomonas sp.
SKA14]
gi|219720542|gb|EED39067.1| transcription antitermination factor NusB [Stenotrophomonas sp.
SKA14]
Length = 159
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 1 MTIQDNKKDL-KLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD 52
M K K R R AR AVQALY I G + +I+++
Sbjct: 1 MNKNTQGKPSGKPVRRDGVDPVLRSRARRRAVQALYAWQISGGNAQSLIAQF-------- 52
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
E DL +F ++HGV+D ++ ID + L +D I ++LR
Sbjct: 53 ---AHEQAREIADLAYFEALVHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAG 107
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
EL VP V+I+E + A F ++N VLD+ + + SG
Sbjct: 108 YELRYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158
>gi|149928254|ref|ZP_01916498.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
gi|149823060|gb|EDM82301.1| transcription antitermination protein NusB [Limnobacter sp. MED105]
Length = 162
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
K+ + R +R A+Q LYQ + E+ D + +
Sbjct: 8 DSGKRQGHTRNARRRSRELALQGLYQWFLNPTEVGEV-----------DAHIRDAPGFDK 56
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D E + ++HG + + + I + W L + ++L E+ +P
Sbjct: 57 ADREHYESLLHGSVHHLEDLMHQIQPFIDRPWG--ELSPVEKAVLVLASHEMNTHAEIPY 114
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V+I+E V + F D KF+N VLDKV+ +
Sbjct: 115 RVVINEAVELTKTFGGTDAFKFVNGVLDKVAAQARDSE 152
>gi|238791410|ref|ZP_04635048.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
gi|238729026|gb|EEQ20542.1| N utilization substance protein B [Yersinia intermedia ATCC 29909]
Length = 138
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 TSLDALMAPFLSRQ--LEELGQVERAILRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ K+
Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138
>gi|170693624|ref|ZP_02884782.1| NusB antitermination factor [Burkholderia graminis C4D1M]
gi|170141406|gb|EDT09576.1| NusB antitermination factor [Burkholderia graminis C4D1M]
Length = 144
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R A Q LYQ + G EI D +L + D E
Sbjct: 1 MKSARRRSRELATQGLYQWLLSGSPGGEI-----------DAQLRGAQGFDKADHEHLDA 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + + I+ CL +L + ++L EL +P V+I+E V
Sbjct: 50 ILHGVIRDSEALSADIAPCLDR--PIEQLSPVERAVLLVAAFELKNHVDIPYRVVINEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F D K++N VLDK++ K
Sbjct: 108 ELAKTFGGVDGYKYVNGVLDKLAAKLRAAE 137
>gi|304316761|ref|YP_003851906.1| NusB antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778263|gb|ADL68822.1| NusB antitermination factor [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 140
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ D+ +I++ + ES + ++ +
Sbjct: 2 NRTQAREWLVKLLYQFDVSKSEPPDILNRF------------FESNDPEEEKDYIEKTFY 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+++ +ID I L W +R+ I +I+R E++ C +P V I+E V IA
Sbjct: 50 GIVENVNNIDDRIKKYLKN-WDINRIAKIDLAIIRCSFYEILYCDDIPNSVSINEAVEIA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ P FIN +L + +
Sbjct: 109 KKYSTEKSPSFINGILGSLVKD 130
>gi|328472533|gb|EGF43396.1| transcription antitermination protein NusB [Vibrio parahaemolyticus
10329]
Length = 151
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDL 66
+K + R AR A+QA+Y I + I ++ + + EL D+
Sbjct: 1 MKPAA-RRNARQFALQAIYSWQITKENVATIEEQFLSGDKYDEEELRASEPALAAPETDV 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+FR ++ GV+ +D I ++ LDM+ ++LR + E+ VP +V+
Sbjct: 60 AYFRELLSGVVLSHAELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E + +A F D KF+N VLDK +
Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAA 145
>gi|223939373|ref|ZP_03631252.1| NusB antitermination factor [bacterium Ellin514]
gi|223891977|gb|EEF58459.1| NusB antitermination factor [bacterium Ellin514]
Length = 185
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYR------------ 48
+ QD + ++ +R AR AVQ L+Q D+ E ++ + +
Sbjct: 9 SQQDFIRHHRVMGKRREARERAVQFLFQHDLNPPEKLEEALNHFWDSQRPAALAEDKGGA 68
Query: 49 -FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
+ EL + + +I G ++ + D I E W R+ + +I
Sbjct: 69 TWGQKVELPAPTAEEAAVRIFADPLIRGALEHRDEADAQIKKY-AENWDLHRIAAVDRNI 127
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
LR + E++ +P V I+E V IA F + KF+N +LDK+ K E+ R +
Sbjct: 128 LRLAIFEMLHREDIPPVVSINEAVDIAKKFSTYESGKFVNGILDKI--KGELMRPARI 183
>gi|308069602|ref|YP_003871207.1| N utilization substance protein B-like protein [Paenibacillus
polymyxa E681]
gi|305858881|gb|ADM70669.1| N utilization substance protein B-like protein [Paenibacillus
polymyxa E681]
Length = 149
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR AVQ++Y +++ + + E +V V + +
Sbjct: 2 KRRLARELAVQSMYHMEMNEVDAAAAVDMLLQ-EAAEENEAEVVVKNAAVLRAYVLEHVR 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K+ ID L+ L W SRL + ILR E+I VP +V ++E + ++
Sbjct: 61 GTWEHKEAIDGLLVDYLKG-WQISRLSRVDRQILRLAAYEMIFREDVPAKVAVNEAIELS 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KF+N VL +V ++ E ++
Sbjct: 120 KHFGTEESGKFVNGVLGRVIQELEQLKA 147
>gi|238918991|ref|YP_002932505.1| transcription antitermination factor NusB, [Edwardsiella ictaluri
93-146]
gi|259514829|sp|C5BCH6|NUSB_EDWI9 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238868559|gb|ACR68270.1| transcription antitermination factor NusB, putative [Edwardsiella
ictaluri 93-146]
Length = 139
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDVNYFRELLSGVASNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+++D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EYLDGLMAPVLSRQ--LDELGQVERAILRVSIYELSKRQDVPYKVAINEGIELAKIFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ + R
Sbjct: 118 DSHKFVNGVLDKVAPQVRPNR 138
>gi|89895110|ref|YP_518597.1| hypothetical protein DSY2364 [Desulfitobacterium hafniense Y51]
gi|219669523|ref|YP_002459958.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
gi|119390768|sp|Q24UY9|NUSB_DESHY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772633|sp|B8FQ61|NUSB_DESHD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|89334558|dbj|BAE84153.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539783|gb|ACL21522.1| NusB antitermination factor [Desulfitobacterium hafniense DCB-2]
Length = 148
Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR A+Q L+Q+++ G S A + E + + +
Sbjct: 2 SRRLARETALQVLFQLEMTGESQD---------LKSAIHKWADEFAVPEGSIPFAEELAE 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K+ ID + +E WS +R+ + ++LR E++ +P V I+E + IA
Sbjct: 53 GTLTHKEVIDENLEKL-SEGWSLARMANVDRNLLRLASYEILFRKDIPGRVTINEAIEIA 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ + KFIN +LDKV K
Sbjct: 112 KRYGSEESGKFINGILDKVVESVNKK 137
>gi|237749244|ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
gi|229380606|gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13]
Length = 156
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 13/153 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
K R +R A+Q LY+ + II + D
Sbjct: 10 PSKNRSPRHRSREFALQGLYEWLLNRDDAPVIIEHIRQ-----------AHGFDKADTGH 58
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F ++ G + + + ++ + L + +IL G EL +P V+I+
Sbjct: 59 FVTLLSGSIHQADKLREELAPHIDR--PLEELSPVEHAILLLGAFELSNHIEIPYRVVIN 116
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E V + F D KF+N VLDK++ K
Sbjct: 117 EAVELTKSFGGIDGHKFVNGVLDKLAAKLRPVE 149
>gi|152979861|ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
gi|151279938|gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille]
Length = 156
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 17/164 (10%)
Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
MT + + + + R AR A+Q LYQ + I +T +
Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVI-----------ETHIRQAH 49
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D E F +++G + + + ++ + + S L + + L G EL
Sbjct: 50 GFDKADAEHFDALLYGTVKQVGELRAGLAPLIDRE--ISALSPVEHAALLIGAFELKNHI 107
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV---SRKEEIK 160
+P +V+I+E V + F D K++N VLDK +R+ EI
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDKFAVSAREVEIN 151
>gi|113460974|ref|YP_719041.1| transcription antitermination protein NusB [Haemophilus somnus
129PT]
gi|119390774|sp|Q0I3N5|NUSB_HAES1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|112823017|gb|ABI25106.1| N utilization substance protein B [Haemophilus somnus 129PT]
Length = 144
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + +K R AR AVQ LY I + EI + +D ++
Sbjct: 1 MTEK-----VKKLSPRRRARECAVQTLYSWAISKNAPEEIELNFI---------VDQDNE 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD+ +FR + +D + +D +++ L LD I C+ILR V EL
Sbjct: 47 MKGVDMPYFRKLFRQTVDHVEIVDSIMAPYLDRDN--VELDPIECAILRLAVYELKFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGAEESHKYINGVLDKIA 138
>gi|323359977|ref|YP_004226373.1| transcription termination factor [Microbacterium testaceum StLB037]
gi|323276348|dbj|BAJ76493.1| transcription termination factor [Microbacterium testaceum StLB037]
Length = 136
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L+Q D+ G +++ A+ + + R I
Sbjct: 1 MSARTKARKRALDILFQADVRGEELPIMLA--------AEAKRAASEPDRQASWLYARDI 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+D + ID I+ ++ WS R+ + ++LR G E++ VP V I E V
Sbjct: 53 VDGVIDNRDAIDEQIT-TFSKDWSLQRMPAVDRALLRIGTWEILYNDEVPTAVAIDEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A +F D F++ VL +++R
Sbjct: 112 LAKEFSTDDSGSFVHGVLARIAR 134
>gi|153005587|ref|YP_001379912.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
gi|166215659|sp|A7HDY2|NUSB_ANADF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|152029160|gb|ABS26928.1| NusB antitermination factor [Anaeromyxobacter sp. Fw109-5]
Length = 143
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S +R AR A+QALYQID+ + +S + + E+ +
Sbjct: 1 MSLKRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVMED----------AEG 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV ++ ID I ++ W R+ + ++LR V EL+ VPV+V I+E +
Sbjct: 51 FVRGVAAHRRTIDDTI-EGVSTNWRLDRMAKVDRNVLRLAVYELLRTD-VPVKVAINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+ + F+N VLDKV+
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVA 131
>gi|295698399|ref|YP_003603054.1| transcription antitermination factor NusB [Candidatus Riesia
pediculicola USDA]
gi|291157256|gb|ADD79701.1| transcription antitermination factor NusB [Candidatus Riesia
pediculicola USDA]
Length = 140
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR+ AVQALY I G + I+ ++ ++S + VD+E+F+
Sbjct: 1 MRRIRHKARIMAVQALYSWQISGTKNSLIVVDFLN---------MIQSKKIDVDIEYFKK 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I G ++ ID + + +D I +ILR GV EL+ +P +VII+E +
Sbjct: 52 IFIGTSNKVSKIDQKLFRHTSRALKL--IDQIEKAILRLGVFELLYIK-IPYKVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
++ F KF+N VLDK+ + K SG
Sbjct: 109 ELSKKFGSERSYKFVNGVLDKIV--FKKKESGS 139
>gi|329298306|ref|ZP_08255642.1| transcription antitermination protein NusB [Plautia stali symbiont]
Length = 139
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLAGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AFLDGLMKPYLSRQ--LEELGQLEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + + +
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNK 138
>gi|303327268|ref|ZP_07357710.1| transcription antitermination factor NusB [Desulfovibrio sp.
3_1_syn3]
gi|302863256|gb|EFL86188.1| transcription antitermination factor NusB [Desulfovibrio sp.
3_1_syn3]
Length = 163
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 5/162 (3%)
Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + R AR A Q LY + + + + E
Sbjct: 1 MSKAKNTTRRGARELAFQVLYGLSFTPAESRADLRR--AFVLSPHNTAMDEQDLGSEPTG 58
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++ GV +D IS + W R+ I ++LR V E++ VP +V I
Sbjct: 59 FAWELVEGVWGNSAALDTAISRF-SHNWRVDRMGRIELTLLRLAVFEMLYRQDVPPKVAI 117
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+E + ++ F + F+N +LD ++ E +
Sbjct: 118 NEALELSGQFGEDNAKNFVNGILDAAAKALESGELVPSAGQA 159
>gi|149378278|ref|ZP_01895989.1| NusB [Marinobacter algicola DG893]
gi|149357443|gb|EDM45954.1| NusB [Marinobacter algicola DG893]
Length = 158
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q LYQ S T+I SE+ V++ VD +FR ++ G
Sbjct: 22 RRRARALAMQGLYQRHFSKSSITDIESEFI-----------VDNDMSKVDAAYFRDLLRG 70
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + +D L+ L +D I +I+R G EL VP +V+I+E + +A
Sbjct: 71 VHREQAELDRLLEPFLDR--PIHEVDAIELAIVRLGAYELKHRLDVPYKVVINEGIEMAK 128
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KF+N++LDK+S + + +
Sbjct: 129 RFGGTEGHKFVNSLLDKLSHRLRLAET 155
>gi|259909279|ref|YP_002649635.1| transcription antitermination protein NusB [Erwinia pyrifoliae
Ep1/96]
gi|292487447|ref|YP_003530319.1| transcription antitermination protein NusB [Erwinia amylovora
CFBP1430]
gi|292898689|ref|YP_003538058.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
gi|224964901|emb|CAX56424.1| N utilization substance protein B [Erwinia pyrifoliae Ep1/96]
gi|283479334|emb|CAY75250.1| transcription antitermination protein NusB [Erwinia pyrifoliae DSM
12163]
gi|291198537|emb|CBJ45645.1| N utilization substance protein B [Erwinia amylovora ATCC 49946]
gi|291552866|emb|CBA19911.1| transcription antitermination protein NusB [Erwinia amylovora
CFBP1430]
gi|310766819|gb|ADP11769.1| transcription antitermination protein NusB [Erwinia sp. Ejp617]
gi|312171550|emb|CBX79808.1| transcription antitermination protein NusB [Erwinia amylovora ATCC
BAA-2158]
Length = 139
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATHS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDDLMKPFLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + + R
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNR 138
>gi|308185886|ref|YP_003930017.1| N utilization substance protein B [Pantoea vagans C9-1]
gi|308056396|gb|ADO08568.1| N utilization substance protein B [Pantoea vagans C9-1]
Length = 139
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRDDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + R
Sbjct: 118 DSHKFVNGVLDKAGPQIRPNR 138
>gi|114570081|ref|YP_756761.1| transcription antitermination protein NusB [Maricaulis maris MCS10]
gi|119390782|sp|Q0APG4|NUSB_MARMM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114340543|gb|ABI65823.1| NusB antitermination factor [Maricaulis maris MCS10]
Length = 160
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
AVQALYQ++I G + +I E+ +RF A E ++ D ++F ++ GV++R+
Sbjct: 24 AVQALYQMEIGGLGASAVIREFREHRFGACGEAPE---FVEADEDFFESLVAGVVERQAD 80
Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
+D + + L +KW RLD + +ILR G EL+ VP V+I EY+ +A+ FF G E
Sbjct: 81 VDPAMDALLADKWRLERLDATVRAILRVGGFELLYRKDVPARVVIDEYIEVANAFFEGAE 140
Query: 143 PKFINAVLDKVSRKEEIKR 161
PKFINA D+ +R
Sbjct: 141 PKFINAAFDRCARGARPDE 159
>gi|241758553|ref|ZP_04756670.1| transcription antitermination factor NusB [Neisseria flavescens
SK114]
gi|241321296|gb|EER57456.1| transcription antitermination factor NusB [Neisseria flavescens
SK114]
Length = 142
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQA+YQ I + EI + S ++D E F
Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKN-----------IHELSQTSNMDEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + IS L L I ++L EL P VII+E +
Sbjct: 50 LFFGTQTHAEEYMEKISPLLDRDE--KDLSPIERAVLLVACHELSTMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LD+++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEP 138
>gi|38233925|ref|NP_939692.1| transcription antitermination protein NusB [Corynebacterium
diphtheriae NCTC 13129]
gi|81564845|sp|Q6NH08|NUSB_CORDI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|38200186|emb|CAE49867.1| Putative transcription termination related protein [Corynebacterium
diphtheriae]
Length = 182
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q+ + K R AR AV L++ ++ I+ + T++
Sbjct: 1 MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDV----- 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + + I+ G +D LI++ L E WS R+ + +ILR V ELI
Sbjct: 56 --NQVPSYTKEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPD 113
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
VP+ I E V +A ++ P +++A+LD +++ + R+G V+ +
Sbjct: 114 VPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPV 161
>gi|41407196|ref|NP_960032.1| transcription antitermination protein NusB [Mycobacterium avium
subsp. paratuberculosis K-10]
gi|118463415|ref|YP_882592.1| transcription antitermination protein NusB [Mycobacterium avium
104]
gi|254775857|ref|ZP_05217373.1| transcription antitermination protein NusB [Mycobacterium avium
subsp. avium ATCC 25291]
gi|81571413|sp|Q741J2|NUSB_MYCPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215696|sp|A0QI54|NUSB_MYCA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|41395547|gb|AAS03415.1| NusB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164702|gb|ABK65599.1| transcription antitermination factor NusB [Mycobacterium avium 104]
Length = 156
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + G S E++ T L + + +
Sbjct: 3 KPLRGRHQARKRAVDLLFEAEARGLSPAEVVDVR--------TGLADTNPEVAPLQPYTA 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ GV D HID LISS L + W+ RL + +ILR V EL+ VP V + E
Sbjct: 55 AVARGVGDHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEA 113
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A + D P F+N VL +V
Sbjct: 114 VQLAKELSTDDSPGFVNGVLGQV 136
>gi|69244729|ref|ZP_00602993.1| Antitermination protein NusB [Enterococcus faecium DO]
gi|227550442|ref|ZP_03980491.1| transcription antitermination protein NusB [Enterococcus faecium
TX1330]
gi|257879351|ref|ZP_05659004.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
gi|257881783|ref|ZP_05661436.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
gi|257888470|ref|ZP_05668123.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
gi|257890177|ref|ZP_05669830.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
gi|257897155|ref|ZP_05676808.1| antitermination protein NusB [Enterococcus faecium Com12]
gi|257899153|ref|ZP_05678806.1| antitermination protein NusB [Enterococcus faecium Com15]
gi|258615757|ref|ZP_05713527.1| transcription antitermination protein NusB [Enterococcus faecium
DO]
gi|260558793|ref|ZP_05830982.1| antitermination protein NusB [Enterococcus faecium C68]
gi|261206503|ref|ZP_05921203.1| antitermination protein NusB [Enterococcus faecium TC 6]
gi|289565413|ref|ZP_06445862.1| transcription antitermination factor NusB [Enterococcus faecium
D344SRF]
gi|293377380|ref|ZP_06623584.1| transcription antitermination factor NusB [Enterococcus faecium
PC4.1]
gi|293553169|ref|ZP_06673806.1| transcription antitermination factor NusB [Enterococcus faecium
E1039]
gi|293560490|ref|ZP_06676982.1| transcription antitermination factor NusB [Enterococcus faecium
E1162]
gi|293568316|ref|ZP_06679640.1| transcription antitermination factor NusB [Enterococcus faecium
E1071]
gi|293571749|ref|ZP_06682768.1| transcription antitermination factor NusB [Enterococcus faecium
E980]
gi|294614729|ref|ZP_06694631.1| transcription antitermination factor NusB [Enterococcus faecium
E1636]
gi|294618975|ref|ZP_06698470.1| transcription antitermination factor NusB [Enterococcus faecium
E1679]
gi|294621587|ref|ZP_06700752.1| transcription antitermination factor NusB [Enterococcus faecium
U0317]
gi|314937887|ref|ZP_07845203.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a04]
gi|314941378|ref|ZP_07848271.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133C]
gi|314950137|ref|ZP_07853423.1| transcription antitermination factor NusB [Enterococcus faecium
TX0082]
gi|314951322|ref|ZP_07854376.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133A]
gi|314992847|ref|ZP_07858248.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133B]
gi|314998051|ref|ZP_07862939.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a01]
gi|68196320|gb|EAN10749.1| Antitermination protein NusB [Enterococcus faecium DO]
gi|227180343|gb|EEI61315.1| transcription antitermination protein NusB [Enterococcus faecium
TX1330]
gi|257813579|gb|EEV42337.1| antitermination protein NusB [Enterococcus faecium 1,230,933]
gi|257817441|gb|EEV44769.1| antitermination protein NusB [Enterococcus faecium 1,231,502]
gi|257824524|gb|EEV51456.1| antitermination protein NusB [Enterococcus faecium 1,141,733]
gi|257826537|gb|EEV53163.1| antitermination protein NusB [Enterococcus faecium 1,231,410]
gi|257833720|gb|EEV60141.1| antitermination protein NusB [Enterococcus faecium Com12]
gi|257837065|gb|EEV62139.1| antitermination protein NusB [Enterococcus faecium Com15]
gi|260075252|gb|EEW63565.1| antitermination protein NusB [Enterococcus faecium C68]
gi|260079213|gb|EEW66904.1| antitermination protein NusB [Enterococcus faecium TC 6]
gi|289162742|gb|EFD10593.1| transcription antitermination factor NusB [Enterococcus faecium
D344SRF]
gi|291589028|gb|EFF20852.1| transcription antitermination factor NusB [Enterococcus faecium
E1071]
gi|291592467|gb|EFF24074.1| transcription antitermination factor NusB [Enterococcus faecium
E1636]
gi|291594636|gb|EFF26018.1| transcription antitermination factor NusB [Enterococcus faecium
E1679]
gi|291598752|gb|EFF29804.1| transcription antitermination factor NusB [Enterococcus faecium
U0317]
gi|291602579|gb|EFF32794.1| transcription antitermination factor NusB [Enterococcus faecium
E1039]
gi|291605638|gb|EFF35080.1| transcription antitermination factor NusB [Enterococcus faecium
E1162]
gi|291608206|gb|EFF37509.1| transcription antitermination factor NusB [Enterococcus faecium
E980]
gi|292644072|gb|EFF62178.1| transcription antitermination factor NusB [Enterococcus faecium
PC4.1]
gi|313587893|gb|EFR66738.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a01]
gi|313592651|gb|EFR71496.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133B]
gi|313596539|gb|EFR75384.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133A]
gi|313599801|gb|EFR78644.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133C]
gi|313642745|gb|EFS07325.1| transcription antitermination factor NusB [Enterococcus faecium
TX0133a04]
gi|313643578|gb|EFS08158.1| transcription antitermination factor NusB [Enterococcus faecium
TX0082]
Length = 149
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 3/150 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + D + +
Sbjct: 1 MNKELSRHEIREMALQALFPLDFN---ADLTKEDAIFNAIELDHRDMINEDESEFVPVYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV +K +D +I L W +R+ + ILR + E+ VP V ++E
Sbjct: 58 DTLVGGVCAKKDELDKVIEKHLKNNWHINRISKMDLVILRIAIFEMTYVTDVPAAVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ +A F KF+N VL V ++ E
Sbjct: 118 AIELAKTFSDDRSRKFVNGVLSNVLKELEA 147
>gi|332307436|ref|YP_004435287.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174765|gb|AEE24019.1| NusB antitermination factor [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 140
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + R AR AVQA+Y + ++ + + + VD E+F
Sbjct: 1 MKPAA-RRKARELAVQAVYSWQMSKNPLDQV-----------ELSIVTSNNMQDVDTEYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ V+ + +D I L LD + +ILR EL+E VP +V+I+E
Sbjct: 49 LELLRAVVRKTAELDAKIKPYLGRLP--EELDPVENAILRLATYELVERIDVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F + KFIN VLDK +
Sbjct: 107 AIELAKSFGAEESHKFINGVLDKAIKTLRKHE 138
>gi|83593156|ref|YP_426908.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
gi|119390811|sp|Q2RTC4|NUSB_RHORT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|83576070|gb|ABC22621.1| NusB antitermination factor [Rhodospirillum rubrum ATCC 11170]
Length = 185
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 1 MTIQDNKKDLKLSHR-----RG-IARLAAVQALYQIDIIGCS-TTEIISEYE-------- 45
M +QD+K R R ARLAAVQALY +D+ + +++ ++
Sbjct: 1 MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLDFMSGSMGGMA 60
Query: 46 ----TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
+ + D E F +++ G +D +I + L+ W + RL+
Sbjct: 61 IVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLE 120
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ ++LRAGV EL+E P V I EYV IA F+ G EP +NAVLD+V+R +
Sbjct: 121 PVVRAVLRAGVYELLERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSARPEA 180
Query: 162 SG 163
G
Sbjct: 181 FG 182
>gi|167563762|ref|ZP_02356678.1| transcription antitermination protein NusB [Burkholderia
oklahomensis EO147]
gi|167570906|ref|ZP_02363780.1| transcription antitermination protein NusB [Burkholderia
oklahomensis C6786]
Length = 145
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + + EI D +L Y D
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNAAPGEI-----------DAQLRGALGYDKADKTLLDT 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+HGV+ + IS + +L + ++L EL P VII+E V
Sbjct: 51 ILHGVIREHAALAEAISP--SLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A F D K++N VLDK+S K +
Sbjct: 109 ELAKTFGGSDGYKYVNGVLDKLSVKLRPAET 139
>gi|229815218|ref|ZP_04445554.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
13280]
gi|229809228|gb|EEP44994.1| hypothetical protein COLINT_02264 [Collinsella intestinalis DSM
13280]
Length = 216
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
LK++ R +AR A+Q L+Q ++ S ++++ T +
Sbjct: 3 SLKVNRGRTLARSQALQILFQSEMRKVSVEDVLAGDYTLSKG-------------PLAPY 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVI 126
I GV + ID + ++ W+ R+ ++LRA V EL ++ V+
Sbjct: 50 AIEIARGVSANRDRIDSAL-RAVSANWTLERMPGADRNLLRAAVYELYFQVADTLDAAVV 108
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
I+E V IA + + F+N VL ++ R
Sbjct: 109 INEAVEIAKAYGTDESAGFVNGVLGRIVRDR 139
>gi|303239904|ref|ZP_07326427.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
gi|302592614|gb|EFL62339.1| NusB antitermination factor [Acetivibrio cellulolyticus CD2]
Length = 141
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A++ +YQ++I S E I + + D + ++ G
Sbjct: 3 RRAAREIAMKLVYQLEIQKDSREEQIR-----------QTLEQENVTENDTNYITDVVEG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ID I ++ W SR+ + SILR + E+ + +P V ++E V +A
Sbjct: 52 VFKNLEQIDKTI-EMYSKGWKLSRISKVDLSILRLSIYEISFRNDIPFNVSVNEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSR 155
++ + FIN +L KVS+
Sbjct: 111 NYSGEESSSFINGILGKVSK 130
>gi|302517963|ref|ZP_07270305.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
gi|302426858|gb|EFK98673.1| transcription antitermination factor NusB [Streptomyces sp. SPB78]
Length = 144
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRNDTQQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V
Sbjct: 53 VEGYAEHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+A +F D P F+N +L + + + + G V
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRF-KNLKPELRGPVD 144
>gi|222111432|ref|YP_002553696.1| nusb antitermination factor [Acidovorax ebreus TPSY]
gi|254772634|sp|B9MBL7|NUSB_DIAST RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|221730876|gb|ACM33696.1| NusB antitermination factor [Acidovorax ebreus TPSY]
Length = 177
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T + R AR A+QALYQ + G T I D S +
Sbjct: 21 TTGTGARKAGSKSGRSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGF 69
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++HG + Q++D LI+ L S + I +++ GV E C V
Sbjct: 70 HKADAAHYDALLHGCITTAQYMDELIAPQLDR--KMSEISPIEHAVMWIGVYEFQHCQDV 127
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P V+I+E + +A +F D K++N VL+ ++ + A +
Sbjct: 128 PWRVVINECIELAKEFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176
>gi|160897907|ref|YP_001563489.1| NusB antitermination factor [Delftia acidovorans SPH-1]
gi|238687189|sp|A9BVN7|NUSB_DELAS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|160363491|gb|ABX35104.1| NusB antitermination factor [Delftia acidovorans SPH-1]
Length = 212
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 18/168 (10%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+QALYQ + G I D S + D
Sbjct: 27 RKAASKSNRSRAREFALQALYQHLVGGNDVEAI-----------DRFTRDLSGFHKADSV 75
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++ G ++ + +D LI+ + + + I + + GV E C VP V++
Sbjct: 76 HYDALLRGCINSQVDLDALIAP--KLDRTMAEISPIEHASMWIGVYEFQHCPDVPWRVVL 133
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV-----SRKEEIKRSGCVSAITQ 170
+E + +A +F D K++NAVL+ + + + E R+G SA Q
Sbjct: 134 NECIELAKEFGGTDGHKYVNAVLNGLAPTLRAAEVEHDRAGKGSAPAQ 181
>gi|121595089|ref|YP_986985.1| NusB antitermination factor [Acidovorax sp. JS42]
gi|166215657|sp|A1W9I4|NUSB_ACISJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|120607169|gb|ABM42909.1| NusB antitermination factor [Acidovorax sp. JS42]
Length = 177
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T + R AR A+QALYQ + G T I D S +
Sbjct: 21 TTGTGARKAGSKSGRSRAREFALQALYQHLVGGNDATAI-----------DVFTRDLSGF 69
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++HG + Q++D LI+ L S + I +++ GV E C V
Sbjct: 70 HKADAAHYDALLHGCITTAQYMDELIAPQLDR--KMSEISPIEHAVMWIGVYEFQHCQDV 127
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P V+I+E + +A +F D K++N VL+ ++ + A +
Sbjct: 128 PWRVVINECIELAKEFGGTDGHKYVNGVLNGLAPQLRATEVAADKAAAR 176
>gi|188534655|ref|YP_001908452.1| transcription antitermination protein NusB [Erwinia tasmaniensis
Et1/99]
gi|238691979|sp|B2VHS8|NUSB_ERWT9 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|188029697|emb|CAO97576.1| N utilization substance protein B [Erwinia tasmaniensis Et1/99]
Length = 139
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLA-----------EQDVKDVDITYFRELVGGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + + R
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNR 138
>gi|329903611|ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
IMCC9480]
gi|327548271|gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium
IMCC9480]
Length = 157
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 13/156 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
K R +R A+Q LYQ + I + + D
Sbjct: 11 PNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEAHL-----------REAHGFDKADAVH 59
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F +++G + + + + + S+L I +IL G EL +P +VII+
Sbjct: 60 FDALLYGTIKQADALRTDLLPLIDR--PLSQLSPIEHAILLIGAYELKNHIEIPYKVIIN 117
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
E V +A F D K++N VLDK + K
Sbjct: 118 ESVELAKSFGGIDGHKYVNGVLDKFAAKTREVEIAA 153
>gi|326201953|ref|ZP_08191823.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
gi|325987748|gb|EGD48574.1| NusB antitermination factor [Clostridium papyrosolvens DSM 2782]
Length = 145
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R +A++ LYQ++I E I+ + D E+ + I+ G
Sbjct: 3 RRASRESAMKLLYQLEIQKTDRDEQINMALE-----------DESLTENDREYIKGIVDG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D+ +D +I W +RL I SILR G+ E++ +P V ++E V +A
Sbjct: 52 VFDKTPVLDGIIEKK-ATGWKINRLSKIDLSILRIGIYEILYRDDIPFSVSVNEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSR 155
+ D F+N +L KVS+
Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130
>gi|134298933|ref|YP_001112429.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
gi|172044268|sp|A4J3F1|NUSB_DESRM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|134051633|gb|ABO49604.1| NusB antitermination factor [Desulfotomaculum reducens MI-1]
Length = 143
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q L+QID+ A E ++E+ R ++ G
Sbjct: 3 RRQARETALQVLFQIDLGKTEPD-----------LALNNTAEEFGAGPQEIEFARQLVMG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID +I +++W +R+ + +I+R + E+ +P V ++E + ++
Sbjct: 52 TLEHIEEIDAMIGKV-SKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
F D +FIN +L K+ ++
Sbjct: 111 IFGTPDSVRFINGILGKLLDNKDE 134
>gi|170717533|ref|YP_001784622.1| transcription antitermination protein NusB [Haemophilus somnus
2336]
gi|189035891|sp|B0UU23|NUSB_HAES2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|168825662|gb|ACA31033.1| NusB antitermination factor [Haemophilus somnus 2336]
Length = 144
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + +K R AR AVQ LY I S EI + +D ++
Sbjct: 1 MTEK-----VKKISPRRRARECAVQNLYSWAISKNSPEEIELNFI---------VDQDNE 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD+ +FR + H ++ + ID ++ L LD I C+ILR V EL
Sbjct: 47 MKGVDMPYFRKLFHQTINHVETIDSTMAPYLDRDN--VELDPIECAILRLAVYELKFELD 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 105 VPYKVVINEAIEVAKVFGAEESHKYINGVLDKIA 138
>gi|297569245|ref|YP_003690589.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
gi|296925160|gb|ADH85970.1| NusB antitermination factor [Desulfurivibrio alkaliphilus AHT2]
Length = 138
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+QALYQ D+ S + + L + +
Sbjct: 1 MGARRKSRELALQALYQADMSNVSALDTLPVL-----------CENFEVSRKALPYGEGL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ ID +I + W SR+ I +I+R V E VP V I+E +
Sbjct: 50 VGGVVANLAAIDRII-EAGSAHWRVSRMSCIDRNIIRIAVYEFNFAADVPAGVAINEAIE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A F D P FIN VLD + +
Sbjct: 109 LAKRFGSEDSPAFINGVLDAIRK 131
>gi|15827185|ref|NP_301448.1| transcription antitermination protein NusB [Mycobacterium leprae
TN]
gi|221229663|ref|YP_002503079.1| transcription antitermination protein NusB [Mycobacterium leprae
Br4923]
gi|18202776|sp|Q9CCR9|NUSB_MYCLE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772649|sp|B8ZUK7|NUSB_MYCLB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|13092733|emb|CAC30031.1| putative transcription termination protein [Mycobacterium leprae]
gi|219932770|emb|CAR70616.1| putative transcription termination protein [Mycobacterium leprae
Br4923]
Length = 190
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
R AR AV L++ + S EII + +
Sbjct: 3 NPVKGRHQARKRAVDLLFEAEARDLSPLEIIEVRSALAKSKLDVAPLHP--------YTV 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
V+ GV + ID LI S L + W RL + +ILR + EL+ VP V + E
Sbjct: 55 VVAQGVSEHTARIDELIISHL-QGWKLDRLPAVDRAILRVSIWELLYADDVPEPVAVDEA 113
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A + D P F+N +L KV
Sbjct: 114 VELAKELSTDDSPGFVNGLLGKV 136
>gi|258620990|ref|ZP_05716024.1| N utilization substance protein B [Vibrio mimicus VM573]
gi|261211383|ref|ZP_05925671.1| transcription termination protein NusB [Vibrio sp. RC341]
gi|262170766|ref|ZP_06038444.1| transcription termination protein NusB [Vibrio mimicus MB-451]
gi|262404600|ref|ZP_06081155.1| transcription termination protein NusB [Vibrio sp. RC586]
gi|258586378|gb|EEW11093.1| N utilization substance protein B [Vibrio mimicus VM573]
gi|260839338|gb|EEX65964.1| transcription termination protein NusB [Vibrio sp. RC341]
gi|261891842|gb|EEY37828.1| transcription termination protein NusB [Vibrio mimicus MB-451]
gi|262349632|gb|EEY98770.1| transcription termination protein NusB [Vibrio sp. RC586]
Length = 156
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + I ++ T Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
Length = 452
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ LY +D+ G Y A T + + + + +G +
Sbjct: 4 ARELALKVLYAVDVEG-----------AYGNLALTSVMGKYRPQGPERSLLTELCYGTLR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R ID +++ + + + +ILR V +++ +P +E V +A +
Sbjct: 53 RLNTIDWVLAKFIKR--PLCEQNPWIRNILRLAVYQILYLDRIPPAAATNEAVELAKKYA 110
Query: 139 YGDEPKFINAVLDKVSRKEE 158
F+NAVL +V R+++
Sbjct: 111 PPSMAGFVNAVLRRVVREKD 130
>gi|317047151|ref|YP_004114799.1| NusB antitermination factor [Pantoea sp. At-9b]
gi|316948768|gb|ADU68243.1| NusB antitermination factor [Pantoea sp. At-9b]
Length = 139
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDISYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRSDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + + R
Sbjct: 118 DSHKFVNGVLDKAAPQIRPNR 138
>gi|254516860|ref|ZP_05128918.1| transcription antitermination factor NusB [gamma proteobacterium
NOR5-3]
gi|219674365|gb|EED30733.1| transcription antitermination factor NusB [gamma proteobacterium
NOR5-3]
Length = 150
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR AR A+QALYQ + G ++I +E+ T + + VDLE+F+ +IH
Sbjct: 12 RRRKARHYALQALYQWHMAGARPSDIEAEFRT-----------DYDFEVVDLEYFQALIH 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV Q +D L+ L + LD I S+LR G EL + VP V+I+E V +A
Sbjct: 61 GVPPLAQELDSLLEPLLDRE--LRELDPIERSLLRMGGFELRDRIDVPYRVVINESVALA 118
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F + K+IN VLDK++R+
Sbjct: 119 KKFGAAESYKYINGVLDKLARQLRGPE 145
>gi|87121731|ref|ZP_01077618.1| NusB protein [Marinomonas sp. MED121]
gi|86162982|gb|EAQ64260.1| NusB protein [Marinomonas sp. MED121]
Length = 167
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
S R AR A+QA+YQ + EI +++ V+ D +FR
Sbjct: 22 SRSQLRSAARSFALQAVYQWQMNHAPVNEIEAQF-----------AVDHDLGTCDKAYFR 70
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + + +D L L + LD I + LR G EL E VP V I+E
Sbjct: 71 ELLQGVTAKAKSLDDLFEELLDR--PLAELDPIELATLRIGSYELAERLDVPYRVAINES 128
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V +A F + K++N +LDK++++ +
Sbjct: 129 VELAKSFGASESHKYVNGILDKLAQRVRREEIAA 162
>gi|255524173|ref|ZP_05391133.1| NusB antitermination factor [Clostridium carboxidivorans P7]
gi|296186630|ref|ZP_06855032.1| transcription antitermination factor NusB [Clostridium
carboxidivorans P7]
gi|255512158|gb|EET88438.1| NusB antitermination factor [Clostridium carboxidivorans P7]
gi|296048667|gb|EFG88099.1| transcription antitermination factor NusB [Clostridium
carboxidivorans P7]
Length = 155
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD------------VESVYL 62
R +R ++ L+Q+ I ++++ + +EL
Sbjct: 2 NRRKSRELVMKLLFQMTINKEDFKDVVANLKENIELDKSELQITGIEGKNEIDPENIDLK 61
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+D+E+ ++ GV + K+ ID I L W +RL + +ILR E + ++P
Sbjct: 62 DIDMEYVIRVLKGVQENKESIDSAIEKHL-INWKLNRLSKLDVAILRVCTYEFLYEDNIP 120
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
V I+E + +A + FIN VL + +++
Sbjct: 121 KNVSINEAIELAKRYSGDKSAAFINGVLGSMIKEK 155
>gi|323140958|ref|ZP_08075870.1| transcription antitermination factor NusB [Phascolarctobacterium
sp. YIT 12067]
gi|322414561|gb|EFY05368.1| transcription antitermination factor NusB [Phascolarctobacterium
sp. YIT 12067]
Length = 154
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-----------HV 64
R +AR A+QAL+QID G + + E V+ +
Sbjct: 3 RRLAREVALQALFQIDFTGNEVEQAVDAALDEHEELHPEAAVDKALDQHKELGAASARNY 62
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPV 123
++ V+++GV++ K+ ID ++SC W+ R+ +ILR V E+ ++
Sbjct: 63 VKKYSMVLVNGVVENKEAIDATLNSC-ATDWTVERMPATDRNILRVAVFEMRHEKPALAA 121
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
V I+E V IA + + P+FIN VL K++RK
Sbjct: 122 GVAINEAVEIAKAYGTEESPRFINGVLGKLARK 154
>gi|254821798|ref|ZP_05226799.1| transcription antitermination protein NusB [Mycobacterium
intracellulare ATCC 13950]
Length = 169
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R AR AV L++ + G S E++ T L + + +
Sbjct: 3 RPVKGRHQARKRAVDLLFEAEARGLSPAEVVDVR--------TGLAEANPEIAPLQPYTA 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ GV + H+D LISS L + W+ RL + +ILR V EL+ VP V + E
Sbjct: 55 AVARGVGEHAAHVDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAVDEA 113
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A + D P F+N VL V
Sbjct: 114 VQLAKELSTDDSPGFVNGVLGHV 136
>gi|317122010|ref|YP_004102013.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
gi|315591990|gb|ADU51286.1| NusB antitermination factor [Thermaerobacter marianensis DSM 12885]
Length = 237
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 15/152 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q L+Q + G + E L + + GV R+
Sbjct: 18 EIALQVLFQWEAAGNPLEAGLEW-----------AAGEYDPGEEVLAFAAELCRGVTRRR 66
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFF 138
ID LI+ W RL + ++LR G+ EL+ VP V I+E V +A +
Sbjct: 67 LDIDGLIARY-ARDWDLERLARVDRNVLRLGIYELLYAGRPDVPPPVAINEAVELAKRYS 125
Query: 139 YGDEPKFINAVLDKVSRKEEIKR-SGCVSAIT 169
D +F+N +L +++R + SG V+
Sbjct: 126 SEDAARFVNGILGQLARDRGLATGSGGVAPAA 157
>gi|89099252|ref|ZP_01172130.1| transcription antitermination protein NusB [Bacillus sp. NRRL
B-14911]
gi|89086098|gb|EAR65221.1| transcription antitermination protein NusB [Bacillus sp. NRRL
B-14911]
Length = 130
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ +E I + + +++
Sbjct: 2 KRRTAREKALQALFQIDVSQADPSEAIDHVLEGEEGDE---------------YLTLVVT 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ K+ ID LI L EKW RL + ++LR GV EL VP V+I E + IA
Sbjct: 47 GVLENKEEIDSLIKQYL-EKWKLERLATVDRNLLRQGVYELKYSKEVPANVVIDEAIEIA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F + +FIN VL KV
Sbjct: 106 KIFGDDNSSRFINGVLSKV 124
>gi|187927756|ref|YP_001898243.1| transcription antitermination protein NusB [Ralstonia pickettii
12J]
gi|238691779|sp|B2U7E9|NUSB_RALPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|187724646|gb|ACD25811.1| NusB antitermination factor [Ralstonia pickettii 12J]
Length = 155
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT +++ K + R AR A+Q LYQ + + + +
Sbjct: 1 MTQDNSQAKAKAPAKSARRRARELALQGLYQWLLNRNDPGVVEAHLQD-----------A 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V + F + K++N VLDK++ +
Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLATQVRAVEVAA 153
>gi|325266364|ref|ZP_08133042.1| transcription antitermination factor NusB [Kingella denitrificans
ATCC 33394]
gi|324982157|gb|EGC17791.1| transcription antitermination factor NusB [Kingella denitrificans
ATCC 33394]
Length = 148
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 15/160 (9%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + KK K R AR AVQALYQ I E+ + + +
Sbjct: 1 MSEPKKTKK--SPRRRAREFAVQALYQTAINKIPAEEVAKNTREH-----------TDFK 47
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ D E F + G +++ I L + + + ++L V EL P
Sbjct: 48 NADDELFTAVFFGAHRQQREYMQQIRPHLDRDENL--ISPVERAVLLLAVHELAAMPETP 105
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V+I+E + + F D KFIN++LDK++ +
Sbjct: 106 YPVVINEAIELTKTFGGTDSHKFINSILDKLAAELRPNDP 145
>gi|258405547|ref|YP_003198289.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
gi|257797774|gb|ACV68711.1| NusB antitermination factor [Desulfohalobium retbaense DSM 5692]
Length = 147
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
R + R A Q LY ++ + T+ + E E+ ++
Sbjct: 4 STKSARRLGRQTAFQVLYSLNFQESHGNGLALLQRTFTHLIEQEEVGEAA-----ADFAW 58
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + + +D LIS ++ W R+ I SILR + E+ +P +V I+E
Sbjct: 59 ELVQGVWENRDELDELISRH-SQHWRVGRIAKIELSILRLALYEMYFRSDIPPKVAINEG 117
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
V +A +F F+N +LD ++
Sbjct: 118 VELAKEFGDEQSRGFVNGILDAAAK 142
>gi|254492114|ref|ZP_05105289.1| transcription antitermination factor NusB [Methylophaga thiooxidans
DMS010]
gi|224462666|gb|EEF78940.1| transcription antitermination factor NusB [Methylophaga thiooxydans
DMS010]
Length = 150
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AAVQALYQ + + + E+ T + +D ++F +I
Sbjct: 6 PRTKARRAAVQALYQALVNNETPQKAGLEFVTAEYA-----------DKIDRKYFTTLIE 54
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + +Q ID +S + +D + S+LR V E + +P V+++E V +A
Sbjct: 55 GTIKYQQAIDAELSE--AVDRDLNAVDPVEISVLRLAVFEFMHLPEIPYRVVLNEAVELA 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F K++N VLDK+ +
Sbjct: 113 KSFGGEQGHKYVNGVLDKMGARLRPHE 139
>gi|229524269|ref|ZP_04413674.1| transcription termination protein NusB [Vibrio cholerae bv.
albensis VL426]
gi|229337850|gb|EEO02867.1| transcription termination protein NusB [Vibrio cholerae bv.
albensis VL426]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + I ++ T Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|157369317|ref|YP_001477306.1| transcription antitermination protein NusB [Serratia proteamaculans
568]
gi|166918812|sp|A8GAN8|NUSB_SERP5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157321081|gb|ABV40178.1| NusB antitermination factor [Serratia proteamaculans 568]
Length = 138
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIVYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL VP +V I+E + +A F
Sbjct: 60 GLLDSLMAPVLSRQ--LEELGQVERAVLRIALYELKMREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ K+
Sbjct: 118 DSHKFVNGVLDKVAPSIRKKK 138
>gi|89093481|ref|ZP_01166429.1| NusB protein [Oceanospirillum sp. MED92]
gi|89082171|gb|EAR61395.1| NusB protein [Oceanospirillum sp. MED92]
Length = 159
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 1 MTIQDNK----KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ +NK K L+ +R AR A+QALY + G E+ +++
Sbjct: 1 MSENENKPAKKKKPSLTTQRRNARSYALQALYSWTLAGQPLNELEAQF-----------R 49
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
V++ D+ F ++H + K +D L + L + LD I ++LR G EL
Sbjct: 50 VDNDMRDTDIRLFSELLHSIAGGKSELDQLYTDFLDR--NVDELDPIELNVLRIGAYELS 107
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ VP V I+E V +A F D K++N VLDK++++ +
Sbjct: 108 KRFEVPYRVAINESVELAKTFGATDSHKYVNGVLDKLAQRVRMAE 152
>gi|15642265|ref|NP_231898.1| transcription antitermination protein NusB [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121586175|ref|ZP_01675966.1| N utilization substance protein B [Vibrio cholerae 2740-80]
gi|121729760|ref|ZP_01682199.1| N utilization substance protein B [Vibrio cholerae V52]
gi|147673228|ref|YP_001217781.1| transcription antitermination protein NusB [Vibrio cholerae O395]
gi|153217373|ref|ZP_01951124.1| N utilization substance protein B [Vibrio cholerae 1587]
gi|153803017|ref|ZP_01957603.1| N utilization substance protein B [Vibrio cholerae MZO-3]
gi|153824256|ref|ZP_01976923.1| N utilization substance protein B [Vibrio cholerae B33]
gi|153828248|ref|ZP_01980915.1| N utilization substance protein B [Vibrio cholerae 623-39]
gi|227082391|ref|YP_002810942.1| N utilization substance protein B [Vibrio cholerae M66-2]
gi|229507660|ref|ZP_04397165.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
gi|229512145|ref|ZP_04401624.1| transcription termination protein NusB [Vibrio cholerae B33]
gi|229513908|ref|ZP_04403370.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
gi|229519280|ref|ZP_04408723.1| transcription termination protein NusB [Vibrio cholerae RC9]
gi|229522212|ref|ZP_04411629.1| transcription termination protein NusB [Vibrio cholerae TM
11079-80]
gi|229528732|ref|ZP_04418122.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
gi|229607164|ref|YP_002877812.1| transcription antitermination protein NusB [Vibrio cholerae
MJ-1236]
gi|254286062|ref|ZP_04961023.1| N utilization substance protein B [Vibrio cholerae AM-19226]
gi|254849396|ref|ZP_05238746.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
gi|255747039|ref|ZP_05420984.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
gi|262161417|ref|ZP_06030527.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
gi|262168266|ref|ZP_06035963.1| transcription termination protein NusB [Vibrio cholerae RC27]
gi|262190236|ref|ZP_06048510.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
gi|297580910|ref|ZP_06942835.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
gi|298500359|ref|ZP_07010164.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
gi|22095970|sp|Q9KPU5|NUSB_VIBCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|172047603|sp|A5F5Z6|NUSB_VIBC3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772665|sp|C3LQ39|NUSB_VIBCM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|9656829|gb|AAF95411.1| N utilization substance protein B [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549587|gb|EAX59611.1| N utilization substance protein B [Vibrio cholerae 2740-80]
gi|121628511|gb|EAX60997.1| N utilization substance protein B [Vibrio cholerae V52]
gi|124113619|gb|EAY32439.1| N utilization substance protein B [Vibrio cholerae 1587]
gi|124121460|gb|EAY40203.1| N utilization substance protein B [Vibrio cholerae MZO-3]
gi|126518222|gb|EAZ75447.1| N utilization substance protein B [Vibrio cholerae B33]
gi|146315111|gb|ABQ19650.1| N utilization substance protein B [Vibrio cholerae O395]
gi|148876337|gb|EDL74472.1| N utilization substance protein B [Vibrio cholerae 623-39]
gi|150423972|gb|EDN15912.1| N utilization substance protein B [Vibrio cholerae AM-19226]
gi|227010279|gb|ACP06491.1| N utilization substance protein B [Vibrio cholerae M66-2]
gi|227014163|gb|ACP10373.1| N utilization substance protein B [Vibrio cholerae O395]
gi|229332506|gb|EEN97992.1| transcription termination protein NusB [Vibrio cholerae 12129(1)]
gi|229341137|gb|EEO06142.1| transcription termination protein NusB [Vibrio cholerae TM
11079-80]
gi|229343969|gb|EEO08944.1| transcription termination protein NusB [Vibrio cholerae RC9]
gi|229349089|gb|EEO14046.1| transcription termination protein NusB [Vibrio cholerae TMA 21]
gi|229352110|gb|EEO17051.1| transcription termination protein NusB [Vibrio cholerae B33]
gi|229355165|gb|EEO20086.1| transcription termination protein NusB [Vibrio cholerae BX 330286]
gi|229369819|gb|ACQ60242.1| transcription termination protein NusB [Vibrio cholerae MJ-1236]
gi|254845101|gb|EET23515.1| transcription antitermination protein NusB [Vibrio cholerae MO10]
gi|255735441|gb|EET90841.1| transcription termination protein NusB [Vibrio cholera CIRS 101]
gi|262023158|gb|EEY41862.1| transcription termination protein NusB [Vibrio cholerae RC27]
gi|262028728|gb|EEY47382.1| transcription termination protein NusB [Vibrio cholerae INDRE 91/1]
gi|262033881|gb|EEY52347.1| transcription termination protein NusB [Vibrio cholerae CT 5369-93]
gi|297534736|gb|EFH73572.1| transcription antitermination protein NusB [Vibrio cholerae RC385]
gi|297541052|gb|EFH77106.1| transcription antitermination factor NusB [Vibrio cholerae MAK 757]
gi|327484782|gb|AEA79189.1| Transcription termination protein NusB [Vibrio cholerae LMA3894-4]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + I ++ T Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D + ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LAGVVLNHNELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|319762696|ref|YP_004126633.1| transcription antitermination factor nusb [Alicycliphilus
denitrificans BC]
gi|317117257|gb|ADU99745.1| transcription antitermination factor NusB [Alicycliphilus
denitrificans BC]
Length = 181
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+QALYQ + G T I D S + D
Sbjct: 30 RKAGSKSGRSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSGFHKADAA 78
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ +QH+D LI+ L + + I +++ GV E C VP V+I
Sbjct: 79 HYDALLHGCIETEQHMDALIAPLLDR--KMAEISPIEHAVMWIGVYEFQHCPDVPWRVVI 136
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E + +A +F D K++N +L+ ++ +
Sbjct: 137 NECIELAKEFGGTDGHKYVNGILNGLAPQLRTAE 170
>gi|258592181|emb|CBE68490.1| N utilization substance protein B homolog (Protein nusB) [NC10
bacterium 'Dutch sediment']
Length = 143
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+ LYQ++ E+ ++ F AD E +
Sbjct: 1 MGKRHRARELALSLLYQLEFYPLEAFEV----QSAAFWADHPAGPE------IRSLTDEL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ++ ID +++S E W SRL ++ +LR EL+ P +V I E +
Sbjct: 51 VQGTLQHQKPIDEVLASH-VEHWILSRLALVDLCVLRLAAFELLFYGKTPWKVAIDEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D F+N VLDK++
Sbjct: 110 LAKAFGGKDSGAFVNGVLDKLA 131
>gi|27904889|ref|NP_778015.1| transcription antitermination protein NusB [Buchnera aphidicola
str. Bp (Baizongia pistaciae)]
gi|29427633|sp|P59452|NUSB_BUCBP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|27904287|gb|AAO27120.1| N utilization substance protein B [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 144
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R AR AVQALY I ++I+ ++ +D +F
Sbjct: 3 SKTKTRRKAREYAVQALYSWQISKNDIYDVINHFKKN-----------KTINEIDQIYFY 51
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+I G+ +++D L+ L+ + L I +ILR EL + + +P +V I+E
Sbjct: 52 ELIIGITKNLKYLDELMRPYLSR--TIQELGQIEKAILRISFFELDKRYDIPFKVTINES 109
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +A F D KFIN VLDK S K S
Sbjct: 110 IELAKLFGAKDSHKFINGVLDKASLKLRKNNS 141
>gi|332288213|ref|YP_004419065.1| transcription antitermination protein NusB [Gallibacterium anatis
UMN179]
gi|330431109|gb|AEC16168.1| transcription antitermination protein NusB [Gallibacterium anatis
UMN179]
Length = 145
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ +K K +R AR VQALY I S I + +L
Sbjct: 1 MNPQQKTEKKPSKRRRARECTVQALYSWFISKNSPESI-----------ELDLVTNDETK 49
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D+ +FR + +G ++ +++ +S L L I +IL EL +P
Sbjct: 50 GADVVYFRKLFNGTVNNLDNLEQEYASFLDR--KIEELGTIERAILDCATFELKYVDDIP 107
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+V+I+E + +A F D K+IN++LDK++
Sbjct: 108 YKVVINEAIEVAKTFGASDSHKYINSILDKLA 139
>gi|258627344|ref|ZP_05722128.1| N utilization substance protein B [Vibrio mimicus VM603]
gi|262166342|ref|ZP_06034079.1| transcription termination protein NusB [Vibrio mimicus VM223]
gi|258580382|gb|EEW05347.1| N utilization substance protein B [Vibrio mimicus VM603]
gi|262026058|gb|EEY44726.1| transcription termination protein NusB [Vibrio mimicus VM223]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDL 66
+K + R AR A+QA+Y I + I ++ T Y + D+
Sbjct: 1 MKPAA-RRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDV 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+FR ++ GV+ +D + ++ LDM+ ++LR + E+ VP +V+
Sbjct: 60 SYFRDLLAGVVLNHTELDSKLRPFVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVV 117
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E + +A F D KF+N VLDK +
Sbjct: 118 INEAIELAKVFAAEDSHKFVNGVLDKAA 145
>gi|257869052|ref|ZP_05648705.1| antitermination protein NusB [Enterococcus gallinarum EG2]
gi|257803216|gb|EEV32038.1| antitermination protein NusB [Enterococcus gallinarum EG2]
Length = 150
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 3/152 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + + + ++ H +
Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNK---DLTKQDAIMHAIELEHHELIDEEQEHFVPAYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV K+ +D +I S L W RL + +ILR + E++ +VP V ++E
Sbjct: 58 DQLVAGVCQYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMVYVDNVPNRVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A F KF+N +L V+ + E K
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSNVNSEIESKN 149
>gi|254498159|ref|ZP_05110911.1| transcription termination factor NusB [Legionella drancourtii
LLAP12]
gi|254352625|gb|EET11408.1| transcription termination factor NusB [Legionella drancourtii
LLAP12]
Length = 147
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+QALYQ + G +EI +++ + + VD+++F +++G
Sbjct: 9 KRKARKLALQALYQWFMSGSEVSEIEAQF-----------RLINNMSKVDVDYFCRLLYG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + ++ S L + L+ I ++LR G EL C VP +V++ E + +
Sbjct: 58 IPEHINELENSFSPFLDRE--VHELNPIELTVLRLGSFELFHCPEVPYKVVLDEAISLTK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+F D +++N VL+ ++++
Sbjct: 116 EFGSQDGYRYVNGVLNNLAQQVRSVE 141
>gi|27363793|ref|NP_759321.1| transcription antitermination protein NusB [Vibrio vulnificus
CMCP6]
gi|37679049|ref|NP_933658.1| transcription antitermination protein NusB [Vibrio vulnificus
YJ016]
gi|320157202|ref|YP_004189581.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
MO6-24/O]
gi|29611804|sp|Q8DFA0|NUSB_VIBVU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39931709|sp|Q7MN52|NUSB_VIBVY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|27359910|gb|AAO08848.1| transcription antitermination factor NusB [Vibrio vulnificus CMCP6]
gi|37197791|dbj|BAC93629.1| transcription termination factor [Vibrio vulnificus YJ016]
gi|319932514|gb|ADV87378.1| 6,7-dimethyl-8-ribityllumazine synthase [Vibrio vulnificus
MO6-24/O]
Length = 155
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+QA+Y I + I +++ Y + D+ +FR +
Sbjct: 10 RRNARQFALQAIYSWQITKENVATIEAQFLAGEKYDEEEHRAAEPALAAPETDVAYFRDL 69
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D I ++ LDM+ ++LR + E+ VP +V+I+E +
Sbjct: 70 LTGVVLSHTELDSKIRPYVSR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIE 127
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D KF+N VLDK +
Sbjct: 128 LAKVFAAEDSHKFVNGVLDKAA 149
>gi|296133218|ref|YP_003640465.1| NusB antitermination factor [Thermincola sp. JR]
gi|296031796|gb|ADG82564.1| NusB antitermination factor [Thermincola potens JR]
Length = 142
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 12/152 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+Q L+QI++ G + + E ++ R ++
Sbjct: 2 SRRKAREAALQVLFQIEMAGVEEEKAYEY-----------IFSEFNIGENAQKFCRELVQ 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + +ID +I + +W R+ + +I+R + E++ VP V I+E + +
Sbjct: 51 GTLRNRAYIDDIIREV-SNEWDLYRMANVDRNIIRMALYEMLFREDVPKNVAINEAIELG 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
DF D KFIN +L V++ E +
Sbjct: 110 KDFSTADSGKFINGILGYVAKNMEQFKRTEPG 141
>gi|86159160|ref|YP_465945.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
gi|197123232|ref|YP_002135183.1| NusB antitermination factor [Anaeromyxobacter sp. K]
gi|220918021|ref|YP_002493325.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
gi|119372275|sp|Q2ILH8|NUSB_ANADE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689890|sp|B4UIM1|NUSB_ANASK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772609|sp|B8JEW3|NUSB_ANAD2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|85775671|gb|ABC82508.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-C]
gi|196173081|gb|ACG74054.1| NusB antitermination factor [Anaeromyxobacter sp. K]
gi|219955875|gb|ACL66259.1| NusB antitermination factor [Anaeromyxobacter dehalogenans 2CP-1]
Length = 142
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ RR AR A+QALYQID+ + +S + + E+ +
Sbjct: 1 MTSRRTRARERALQALYQIDVAAEGIDDALSRFWKSFEPVEREVM----------DLAEG 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV ++ +D I ++ W R+ + ++LR V EL+ VPV+V+I+E +
Sbjct: 51 LVRGVAQHRRAVDEAI-EAVSTNWRLDRMAKVDRNVLRLAVFELLRTD-VPVKVVINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ + F+N VLDKV+ R G
Sbjct: 109 ELGKKYGSESSGAFVNGVLDKVASGLPPARRGE 141
>gi|71909351|ref|YP_286938.1| NusB antitermination factor [Dechloromonas aromatica RCB]
gi|119390763|sp|Q479L3|NUSB_DECAR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71848972|gb|AAZ48468.1| NusB antitermination factor [Dechloromonas aromatica RCB]
Length = 163
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 2 TIQDNKKDLK--LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
+ ++ +D+K R AR +Q LYQ + G I +
Sbjct: 6 SDSEHPQDVKAPPKSARRRAREFVLQGLYQWRVGGADEASIEAY-----------APEME 54
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D E+F + GV+ +++ + +S+ + F+ L + IL G E++
Sbjct: 55 GFAKADREFFVGTLRGVISQQEKLIEQVSTHIDR--PFNELSPVEACILMLGSFEMLNHA 112
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P VII+E + + F D K++N VLDKV+ I R V+A Q
Sbjct: 113 ETPYRVIINEAIELTKAFGGTDGHKYVNGVLDKVA---AILRPDEVAARKQ 160
>gi|323705298|ref|ZP_08116873.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
gi|323535200|gb|EGB24976.1| NusB antitermination factor [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 139
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ DI +I ++ E + ++
Sbjct: 2 NRTQAREWLVKLLYQYDISKLEPQKIFDKFL------------EDNDPEDEKDYIENTFF 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ +ID I L W +R+ I +I+R E++ +P V I+E V IA
Sbjct: 50 GVIKNVDNIDEKIKKYLKN-WDINRIAKIDLAIMRCSFYEILYSTDIPSSVSINEAVEIA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ P FIN +L + R
Sbjct: 109 KKYSTEKSPAFINGILGNLVRDI 131
>gi|54293711|ref|YP_126126.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
gi|54296754|ref|YP_123123.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
gi|148360619|ref|YP_001251826.1| transcription termination factor NusB [Legionella pneumophila str.
Corby]
gi|296106315|ref|YP_003618015.1| N utilization substance protein B [Legionella pneumophila 2300/99
Alcoy]
gi|81601476|sp|Q5WYH2|NUSB_LEGPL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81601958|sp|Q5X720|NUSB_LEGPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215694|sp|A5IGI0|NUSB_LEGPC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|53750539|emb|CAH11941.1| hypothetical protein lpp0793 [Legionella pneumophila str. Paris]
gi|53753543|emb|CAH14998.1| hypothetical protein lpl0764 [Legionella pneumophila str. Lens]
gi|148282392|gb|ABQ56480.1| transcription termination factor NusB [Legionella pneumophila str.
Corby]
gi|295648216|gb|ADG24063.1| N utilization substance protein B [Legionella pneumophila 2300/99
Alcoy]
gi|307609522|emb|CBW99020.1| hypothetical protein LPW_08051 [Legionella pneumophila 130b]
Length = 147
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ AR A+QALYQ + G EI +++ T + VD E+F ++
Sbjct: 7 RGKRRARKFALQALYQWLMSGTDLHEIEAQFRT-----------INNMDKVDGEYFCRLL 55
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+G+ + ++ + L + + L+ I ++LR G EL C +P +VI+ E V +
Sbjct: 56 YGIPTHVEALEASLLPYLDRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSL 113
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+F + +++N VL+ ++++
Sbjct: 114 TKEFGSQEGYRYVNGVLNNLAKQVRSVE 141
>gi|325569721|ref|ZP_08145768.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
12755]
gi|325157277|gb|EGC69442.1| N utilization substance protein B [Enterococcus casseliflavus ATCC
12755]
Length = 154
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 3/153 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + + + ++ H +
Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNK---DLTKQDAIMHAIELEHHELIDEEQEHFVPVYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E
Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKAGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +A F KF+N +L V+++ E K +
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKNN 150
>gi|226942829|ref|YP_002797902.1| transcription antitermination protein NusB [Azotobacter vinelandii
DJ]
gi|226717756|gb|ACO76927.1| transcription antitermination factor NusB [Azotobacter vinelandii
DJ]
Length = 131
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QALYQ + G EI +++ V++ + VD +F I+HGV +K I
Sbjct: 1 MQALYQWHVAGQPLNEIEAQF-----------RVDNDFSTVDGAYFHEILHGVPRQKTEI 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D + L + +D + +ILR EL VP V+I+E + +A F D
Sbjct: 50 DEAFAPLLDR--PLAEVDPVELAILRLSTYELSNRLDVPYRVVINEGIELAKVFGATDGH 107
Query: 144 KFINAVLDKVSRKEEIKR 161
KF+N VLDK++ +
Sbjct: 108 KFVNGVLDKLAPRLRAAE 125
>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
14863]
gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 459
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R AA++ALY +DI Y A S + + +GV
Sbjct: 10 RTGREAALRALYDVDIK-----------AAYANLALDHHLSRSQLDGRERALATELAYGV 58
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
R+ +D I ++D + +ILR +++ +P + + V +A
Sbjct: 59 TRRRATLDWAIGQVAAR--PLEKMDPWVRNILREAAYQILYMDRIPPAAAVDQAVELARQ 116
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
+ + KF+N VL + R+
Sbjct: 117 YGHEGVAKFVNGVLRNLIRRL 137
>gi|1303915|dbj|BAA12571.1| YqhZ [Bacillus subtilis]
Length = 131
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + E I +F ++H
Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDE---------------EKTDPFFEQLVH 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A
Sbjct: 47 GVLEHQDQLDEMISKHLVN-WKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F KF+N VL +
Sbjct: 106 KRFGDDKATKFVNGVLSNI 124
>gi|220929324|ref|YP_002506233.1| NusB antitermination factor [Clostridium cellulolyticum H10]
gi|254772626|sp|B8I3B0|NUSB_CLOCE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219999652|gb|ACL76253.1| NusB antitermination factor [Clostridium cellulolyticum H10]
Length = 145
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R A++ LYQ++I E I+ + D E+ + I+ G
Sbjct: 3 RRASRETAMKLLYQLEIQKTDRDEQINMALE-----------DESLTKNDREYIKGIVDG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ++ +D +I W +RL I S+LR G+ E++ +P V ++E V +A
Sbjct: 52 VYEKTPVLDGIIEKK-ATGWKINRLSKIDLSVLRIGIYEILYRDDIPFSVSVNEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSR 155
+ D F+N +L KVS+
Sbjct: 111 KYSNEDAGAFVNGLLAKVSK 130
>gi|257875394|ref|ZP_05655047.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
gi|257809560|gb|EEV38380.1| antitermination protein NusB [Enterococcus casseliflavus EC20]
Length = 154
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 3/153 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + + + ++ H +
Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNK---DLTKQDAIMHAIELEHHELIDEEQEHFVPVYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E
Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +A F KF+N +L V+++ E K S
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETKAS 150
>gi|257865766|ref|ZP_05645419.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
gi|257872101|ref|ZP_05651754.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
gi|257799700|gb|EEV28752.1| antitermination protein NusB [Enterococcus casseliflavus EC30]
gi|257806265|gb|EEV35087.1| antitermination protein NusB [Enterococcus casseliflavus EC10]
Length = 154
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A+QAL+ +D + + + ++ H +
Sbjct: 1 MSKELSRHEIRKMALQALFPLDFNK---DLTKQDAIMHAIELEHHELIDEEQEHFVPVYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV K+ +D +I S L W RL + +ILR + E+I +VP V ++E
Sbjct: 58 DQLVAGVCHYKEALDEVIQSHLKSGWKIQRLSKMDVTILRIALYEMIYVDNVPNRVALNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A F KF+N +L V+++ E K
Sbjct: 118 AIELAKTFSDDQSRKFVNGILSTVNQELETK 148
>gi|224824226|ref|ZP_03697334.1| NusB antitermination factor [Lutiella nitroferrum 2002]
gi|224603645|gb|EEG09820.1| NusB antitermination factor [Lutiella nitroferrum 2002]
Length = 148
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQ +Y+ ++ +I + L ++ D FR
Sbjct: 1 MKTSRRRAREFAVQGIYEWELNPDRPASLI----------EKHLRENDYFVKADEALFRT 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV+ + I + + + ++L LEL + P VII+E +
Sbjct: 51 LLFGVLKDAAELSPKIDRYY--ERPADEVSPVERAVLLMAALELTQHPETPYPVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
I F D KF+N VLDK++
Sbjct: 109 EITKTFGGTDGHKFVNGVLDKLAADVRPDEVAS 141
>gi|309780817|ref|ZP_07675558.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
gi|308920499|gb|EFP66155.1| transcription antitermination factor NusB [Ralstonia sp. 5_7_47FAA]
Length = 155
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT +++ K + R AR A+Q LYQ + + + +
Sbjct: 1 MTQDNSQAKAKAPAKSARRRARELALQGLYQWLLNRNDPGVVEAHLQD-----------A 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++HG + + + + L + L + + L G EL+ C
Sbjct: 50 QGFNKADRAHFDALLHGAIREETTLTEAFTPYLDR--PVAELSPVERAALLVGAYELVHC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +V+I+E V + F + K++N VLDK++ +
Sbjct: 108 VDIPYKVVINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 153
>gi|170760171|ref|YP_001787214.1| transcription antitermination protein NusB [Clostridium botulinum
A3 str. Loch Maree]
gi|238688744|sp|B1KT54|NUSB_CLOBM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169407160|gb|ACA55571.1| N utilization substance protein B [Clostridium botulinum A3 str.
Loch Maree]
Length = 141
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES-VYLHVDLEWFRVII 73
R +R A++ L+Q + G + E + + R D E D ES VD+++ + II
Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEDKEKDYESVDLKDVDIDYVKRII 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
G+ K+ ID I L W RL + SILR EL +P V ++E + +
Sbjct: 62 KGIEKNKEEIDGKIKGNLKN-WKIERLSKVDLSILRLCTYELKFEEDIPKRVSVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
A + FIN VL K+
Sbjct: 121 AKKYSGEKSATFINGVLGKMI 141
>gi|113868812|ref|YP_727301.1| transcription antitermination protein NusB [Ralstonia eutropha H16]
gi|122946671|sp|Q0K7T8|NUSB_RALEH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|113527588|emb|CAJ93933.1| transcription termination factor [Ralstonia eutropha H16]
Length = 172
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A+Q LYQ + I + + D E F
Sbjct: 31 PKSARRRSRELALQGLYQWLLNRNDIGAIQAHL-----------HDAQGFNKADREHFDA 79
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + + + L L + + L G EL+ C +P +V+I+E V
Sbjct: 80 LLNGAVREEARLTAAFEPFLDR--KVEELSPVERAALLVGSYELVHCLDIPYKVVINEAV 137
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ F + K++N VLDK++ +
Sbjct: 138 ELTKTFGGVEGYKYVNGVLDKLAAQVRAAEVAA 170
>gi|108757895|ref|YP_632923.1| transcription antitermination factor NusB [Myxococcus xanthus DK
1622]
gi|119390787|sp|Q1D350|NUSB_MYXXD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|108461775|gb|ABF86960.1| transcription antitermination factor NusB [Myxococcus xanthus DK
1622]
Length = 140
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALYQ+++ +T E + A + + + +++ R +
Sbjct: 1 MGARRTGRERALQALYQLEMATATTAEALE-------SAWSAAEESNKRDPDAVKFAREL 53
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID LI + W R+ I ++LR G+ EL +P +V I+E V
Sbjct: 54 VEGVQSHRDEIDQLI-ERHSHNWRLDRMSRIDRNVLRLGIFELKYRPDIPRKVSINEAVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+ +F + F+N +LD+V+
Sbjct: 113 LGKNFGNEESSAFVNGLLDRVA 134
>gi|121534502|ref|ZP_01666325.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
gi|121306995|gb|EAX47914.1| NusB antitermination factor [Thermosinus carboxydivorans Nor1]
Length = 141
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+Q L+Q+D ++ R E+ R ++
Sbjct: 2 SRRKAREIALQTLFQLDFNDTDPVAALAALVQDR----------DDVSKNAQEYARQLVT 51
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133
G D ID +I + ++W R+ + +I+R + E+ +P V+I+E V +
Sbjct: 52 GTKDHLAEIDAII-AGQAKEWKLERMAGVDRNIVRMAIYEMRYGQEKLPPNVVINEAVEL 110
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A F + +F+N +L + +K+
Sbjct: 111 AKIFSTEESGRFVNGILGALVKKK 134
>gi|94311627|ref|YP_584837.1| transcription antitermination protein NusB [Cupriavidus
metallidurans CH34]
gi|119390804|sp|Q1LJV8|NUSB_RALME RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|93355479|gb|ABF09568.1| transcription termination factor, N utilization substance protein
B-like protein(Protein nusB) [Cupriavidus metallidurans
CH34]
Length = 171
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 13/156 (8%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+ R +R A+Q LYQ + I + + D
Sbjct: 24 TEPKAPPKSARRRSRELALQGLYQWLLNRNDIGAIQAHL-----------HDAQGFNKAD 72
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E F ++ G + + + L + L + + L G EL+ C +P +V
Sbjct: 73 REHFDALLGGAVREEARLTAAFEPFLDR--TVDELSPVERAALLVGSYELVHCLDIPYKV 130
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+I+E V + F + K++N VLDK++ +
Sbjct: 131 VINEAVELTKTFGGVEGYKYVNGVLDKLAAQVRAPE 166
>gi|296101538|ref|YP_003611684.1| transcription antitermination protein NusB [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295055997|gb|ADF60735.1| transcription antitermination protein NusB [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 139
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLS-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|115377906|ref|ZP_01465091.1| transcription antitermination factor NusB [Stigmatella aurantiaca
DW4/3-1]
gi|310822844|ref|YP_003955202.1| n utilization substance protein b [Stigmatella aurantiaca DW4/3-1]
gi|115365066|gb|EAU64116.1| transcription antitermination factor NusB [Stigmatella aurantiaca
DW4/3-1]
gi|309395916|gb|ADO73375.1| N utilization substance protein B [Stigmatella aurantiaca DW4/3-1]
Length = 141
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALYQ+++ ++ A E + + + +
Sbjct: 1 MGARRTGRERALQALYQLEMTPSTS------VHEALASAWAASSEEGKPDPEAVRFAQEL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R+ +D LI + W R+ I ++LR GV EL +P +V I+E V
Sbjct: 55 VEGVQTRRAEVDQLIEKH-SHNWRLDRMSRIDRNVLRLGVFELKYRPDIPKKVSINEAVE 113
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+ +F + F+N +LD+V+
Sbjct: 114 LGKNFGTEESSAFVNGLLDRVA 135
>gi|311280694|ref|YP_003942925.1| NusB antitermination factor [Enterobacter cloacae SCF1]
gi|308749889|gb|ADO49641.1| NusB antitermination factor [Enterobacter cloacae SCF1]
Length = 139
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|163747437|ref|ZP_02154789.1| transcription antitermination factor NusB [Oceanibulbus indolifex
HEL-45]
gi|161379290|gb|EDQ03707.1| transcription antitermination factor NusB [Oceanibulbus indolifex
HEL-45]
Length = 158
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 1 MTIQ----DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT + K+ +K +RL AVQAL+Q++ + + E+ +RF A E D
Sbjct: 1 MTSNALSGNQKRKMK-----SASRLYAVQALFQMEHSAQTVDVVRHEFIDHRFGAVYEGD 55
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
D++ F ++ ++ + ID + + + KW+ +R+D L ++ RA E
Sbjct: 56 E---MQEGDVDHFSRVLEDAVNYQAPIDQMANRAIVAKWAIARIDPTLRALFRAAGAEFR 112
Query: 117 ECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIK 160
P V+I EYV +AH FF EP F+NAVLD ++R+ +
Sbjct: 113 H-DETPPRVVIKEYVDVAHAFFPEGREPSFVNAVLDHMAREARPE 156
>gi|229916254|ref|YP_002884900.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
gi|259514838|sp|C4L3F7|NUSB_EXISA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229467683|gb|ACQ69455.1| NusB antitermination factor [Exiguobacterium sp. AT1b]
Length = 128
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+QI++ E I ++ ++
Sbjct: 2 KRHEAREKAIQTLFQIEVSKLEVDEAIEFALD---------------GEESDPFYEQLVT 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID L+ L W RL + +ILR EL+ ++P V I+E V +A
Sbjct: 47 GTLEHIEDIDALLVENLKN-WRLDRLGNVERTILRMATFELLYVETIPENVTINEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F + K +N VL + +++
Sbjct: 106 KSFGDEEAGKLVNGVLGNIIKED 128
>gi|221135088|ref|ZP_03561391.1| transcription antitermination protein NusB [Glaciecola sp.
HTCC2999]
Length = 145
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 14/156 (8%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
++ +K + R AR A+Q +Y + G + + + L + +D
Sbjct: 2 SEAKMKPAA-RRKARELALQGIYSWQMNGNTIESV-----------ELHLATTNDMSKID 49
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
L +F+ ++ + +D+ I L LD I +ILR LEL + VP +V
Sbjct: 50 LAFFQELLRDTAKKVVELDVAIKPYLGRLP--EELDPIEKAILRLATLELTQRIDVPYKV 107
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+I+E + +A F + KF+N VLDK +
Sbjct: 108 VINEAIELAKSFGAEESHKFVNGVLDKAVKTLRRHE 143
>gi|312139563|ref|YP_004006899.1| transcriptional antiterminator factor nusb [Rhodococcus equi 103S]
gi|325672553|ref|ZP_08152249.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
33707]
gi|311888902|emb|CBH48215.1| transcriptional antiterminator factor NusB [Rhodococcus equi 103S]
gi|325556430|gb|EGD26096.1| transcription antitermination protein NusB [Rhodococcus equi ATCC
33707]
Length = 167
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + ++ E ++L + +
Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDVDPVDLADER--------SDLAGRDDSVAPVAPYTV 57
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E
Sbjct: 58 TVVQGVAENLDRLDQVIESHL-QDWTLDRLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A + D P F+N VL +V
Sbjct: 117 VELAKELSTDDSPGFVNGVLGQVV 140
>gi|255971431|ref|ZP_05422017.1| antitermination protein NusB [Enterococcus faecalis T1]
gi|255974044|ref|ZP_05424630.1| antitermination protein NusB [Enterococcus faecalis T2]
gi|256617900|ref|ZP_05474746.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
gi|256761733|ref|ZP_05502313.1| antitermination protein NusB [Enterococcus faecalis T3]
gi|256957069|ref|ZP_05561240.1| antitermination protein NusB [Enterococcus faecalis DS5]
gi|256960159|ref|ZP_05564330.1| antitermination protein NusB [Enterococcus faecalis Merz96]
gi|256962598|ref|ZP_05566769.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
gi|257077865|ref|ZP_05572226.1| antitermination protein NusB [Enterococcus faecalis JH1]
gi|257081230|ref|ZP_05575591.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
gi|257083886|ref|ZP_05578247.1| antitermination protein NusB [Enterococcus faecalis Fly1]
gi|257086336|ref|ZP_05580697.1| antitermination protein NusB [Enterococcus faecalis D6]
gi|257089386|ref|ZP_05583747.1| antitermination protein nusB [Enterococcus faecalis CH188]
gi|257415595|ref|ZP_05592589.1| antitermination protein NusB [Enterococcus faecalis AR01/DG]
gi|257418568|ref|ZP_05595562.1| transcription antitermination protein nusB [Enterococcus faecalis
T11]
gi|257421226|ref|ZP_05598216.1| transcription antitermination protein nusB [Enterococcus faecalis
X98]
gi|294780567|ref|ZP_06745930.1| transcription antitermination factor NusB [Enterococcus faecalis
PC1.1]
gi|300859628|ref|ZP_07105716.1| transcription antitermination factor NusB [Enterococcus faecalis
TUSoD Ef11]
gi|255962449|gb|EET94925.1| antitermination protein NusB [Enterococcus faecalis T1]
gi|255966916|gb|EET97538.1| antitermination protein NusB [Enterococcus faecalis T2]
gi|256597427|gb|EEU16603.1| antitermination protein NusB [Enterococcus faecalis ATCC 4200]
gi|256682984|gb|EEU22679.1| antitermination protein NusB [Enterococcus faecalis T3]
gi|256947565|gb|EEU64197.1| antitermination protein NusB [Enterococcus faecalis DS5]
gi|256950655|gb|EEU67287.1| antitermination protein NusB [Enterococcus faecalis Merz96]
gi|256953094|gb|EEU69726.1| antitermination protein NusB [Enterococcus faecalis HIP11704]
gi|256985895|gb|EEU73197.1| antitermination protein NusB [Enterococcus faecalis JH1]
gi|256989260|gb|EEU76562.1| antitermination protein NusB [Enterococcus faecalis E1Sol]
gi|256991916|gb|EEU79218.1| antitermination protein NusB [Enterococcus faecalis Fly1]
gi|256994366|gb|EEU81668.1| antitermination protein NusB [Enterococcus faecalis D6]
gi|256998198|gb|EEU84718.1| antitermination protein nusB [Enterococcus faecalis CH188]
gi|257157423|gb|EEU87383.1| antitermination protein NusB [Enterococcus faecalis ARO1/DG]
gi|257160396|gb|EEU90356.1| transcription antitermination protein nusB [Enterococcus faecalis
T11]
gi|257163050|gb|EEU93010.1| transcription antitermination protein nusB [Enterococcus faecalis
X98]
gi|294452394|gb|EFG20833.1| transcription antitermination factor NusB [Enterococcus faecalis
PC1.1]
gi|295113845|emb|CBL32482.1| transcription antitermination factor NusB [Enterococcus sp. 7L76]
gi|300850446|gb|EFK78195.1| transcription antitermination factor NusB [Enterococcus faecalis
TUSoD Ef11]
gi|323480217|gb|ADX79656.1| transcription antitermination factor NusB [Enterococcus faecalis
62]
Length = 150
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R R A+QAL+ +D + Y D V + +
Sbjct: 3 KTELTRHEIREKALQALFPLDFN---ADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLD 59
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++ GV RK +D +I++ L WS RL I ILR + E++ VP V ++E
Sbjct: 60 LLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIVALNEA 119
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V ++ + KF+N VL V ++ + +
Sbjct: 120 VELSKKYSDDRSRKFVNGVLSNVMKEIDSE 149
>gi|29375559|ref|NP_814713.1| transcription antitermination protein NusB [Enterococcus faecalis
V583]
gi|256852630|ref|ZP_05558001.1| transcription antitermination protein NusB [Enterococcus faecalis
T8]
gi|39931895|sp|Q836W8|NUSB_ENTFA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|29343020|gb|AAO80783.1| N utilization substance protein B [Enterococcus faecalis V583]
gi|256711975|gb|EEU27012.1| transcription antitermination protein NusB [Enterococcus faecalis
T8]
Length = 154
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
K+ K R R A+QAL+ +D + Y D V +
Sbjct: 2 EKRMSKTELTRHEIREKALQALFPLDFN---ADLTKQDAIDYALAYDNREIVSEDGEDLV 58
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ +++ GV RK +D +I++ L WS RL I ILR + E++ VP V
Sbjct: 59 PTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVPNIV 118
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++E V ++ + KF+N VL V ++ + +
Sbjct: 119 ALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 153
>gi|15639999|ref|NP_219452.1| transcription antitermination protein NusB [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189026238|ref|YP_001934010.1| transcription antitermination protein NusB [Treponema pallidum
subsp. pallidum SS14]
gi|7387973|sp|O83979|NUSB_TREPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689355|sp|B2S4Q2|NUSB_TREPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|3323342|gb|AAC65965.1| N utilization substance protein B (nusB) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018813|gb|ACD71431.1| N utilization substance protein B [Treponema pallidum subsp.
pallidum SS14]
gi|291060372|gb|ADD73107.1| transcription antitermination factor NusB [Treponema pallidum
subsp. pallidum str. Chicago]
Length = 141
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A QAL+ D G + + R DL + R++ G
Sbjct: 10 RRRARILAFQALFAWDAAGITPETLTQFTWLRRN---------PPPSTQDLGFSRLLFLG 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID +SS L E W F RL+ + +ILR L+ +P V+I E V IA
Sbjct: 61 TLEHLREIDGCVSSRL-EHWDFVRLNKVDKAILRLSAYSLLFQKDIPPVVVIHEAVSIAR 119
Query: 136 DFFYGDEPKFINAVLDKVSR 155
DF D +F+N VLD +++
Sbjct: 120 DFGTDDSFRFVNGVLDNIAK 139
>gi|328955583|ref|YP_004372916.1| NusB antitermination factor [Coriobacterium glomerans PW2]
gi|328455907|gb|AEB07101.1| NusB antitermination factor [Coriobacterium glomerans PW2]
Length = 198
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+K++ R +AR A+Q L+Q + + CS E++ + + + L
Sbjct: 1 MSIKVNRGRTLARSQALQLLFQAEALMCSLDEVL----------EGDYLLSQGPLEP--- 47
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVI 126
+ ++ G ID + + ++ W SR+ ++LR + E+ V+
Sbjct: 48 YALELVRGCYAHLDRIDSALCAV-SQNWELSRMPGSDRNLLRLAIYEMRLADEPIEDAVV 106
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
I+E V IA + + F+N VL ++SR EE+ + ++ +
Sbjct: 107 INEAVEIAKAYGTDESAGFVNGVLGEISRAEELPDADRLTRAS 149
>gi|225075389|ref|ZP_03718588.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
NRL30031/H210]
gi|224953207|gb|EEG34416.1| hypothetical protein NEIFLAOT_00394 [Neisseria flavescens
NRL30031/H210]
Length = 142
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQA+YQ I + EI + S ++D E F
Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKN-----------IHELSQTSNMDEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G IS L L I ++L EL P VII+E +
Sbjct: 50 LFFGAQTHAAEYMEKISPLLDRDE--KDLSPIERAVLLVACHELSTMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LD+++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEP 138
>gi|156935035|ref|YP_001438951.1| transcription antitermination protein NusB [Cronobacter sakazakii
ATCC BAA-894]
gi|166215688|sp|A7MFG4|NUSB_ENTS8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|156533289|gb|ABU78115.1| hypothetical protein ESA_02886 [Cronobacter sakazakii ATCC BAA-894]
Length = 139
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPHIRPNK 138
>gi|320536419|ref|ZP_08036456.1| transcription antitermination factor NusB [Treponema phagedenis
F0421]
gi|320146729|gb|EFW38308.1| transcription antitermination factor NusB [Treponema phagedenis
F0421]
Length = 136
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R+ A QAL+ D S E++ + + + ++
Sbjct: 1 MQIGRRRGRILAFQALFAWDFGQSSPEELVQF---------EWFETKEPVSEEAFLFPKM 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G ++ + ID I W F RL+ +I+R GV L+ P ++I E V
Sbjct: 52 LFLGTLEHLEEIDTHI-KNNLHNWDFDRLNKADKAIIRLGVYSLLFQKDTPSAIVIDEAV 110
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+A F D KF+NA+LD +++
Sbjct: 111 NLARSFGTDDSFKFVNAILDSIAK 134
>gi|28378299|ref|NP_785191.1| transcription antitermination protein NusB [Lactobacillus plantarum
WCFS1]
gi|32171607|sp|Q88WM9|NUSB_LACPL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28271134|emb|CAD64039.1| transcription termination factor NusB [Lactobacillus plantarum
WCFS1]
Length = 139
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A QAL+ ++ + + + L+ E +
Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEETDAVEIPAYLST 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + +D I L++KWS RL ILR EL VP +V ++E +
Sbjct: 52 LVTGVREHQVELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPTKVAVNEAI 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ F KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137
>gi|239827671|ref|YP_002950295.1| transcription antitermination protein NusB [Geobacillus sp. WCH70]
gi|239807964|gb|ACS25029.1| NusB antitermination factor [Geobacillus sp. WCH70]
Length = 133
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+QAL+Q+D+ E + + R +
Sbjct: 1 MMKRHEAREKALQALFQVDVGHIPPEEALQNV---------------TGGKEVDPFLRQL 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V
Sbjct: 46 VIGVTEHQEEIDALLRANL-EKWTLERVANVDRAILRMATYEMKYVDDVPVKVSLDEAVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A F +F+N VL KV
Sbjct: 105 LAKKFGDTKSGRFVNGVLSKV 125
>gi|227517900|ref|ZP_03947949.1| transcription antitermination protein NusB [Enterococcus faecalis
TX0104]
gi|227555087|ref|ZP_03985134.1| transcription antitermination protein NusB [Enterococcus faecalis
HH22]
gi|229546824|ref|ZP_04435549.1| transcription antitermination protein NusB [Enterococcus faecalis
TX1322]
gi|229548918|ref|ZP_04437643.1| transcription antitermination protein NusB [Enterococcus faecalis
ATCC 29200]
gi|293382527|ref|ZP_06628461.1| transcription antitermination factor NusB [Enterococcus faecalis
R712]
gi|293387873|ref|ZP_06632412.1| transcription antitermination factor NusB [Enterococcus faecalis
S613]
gi|307268058|ref|ZP_07549446.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4248]
gi|307271988|ref|ZP_07553255.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0855]
gi|307275459|ref|ZP_07556601.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2134]
gi|307278973|ref|ZP_07560032.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0860]
gi|307289420|ref|ZP_07569374.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0109]
gi|307290060|ref|ZP_07569984.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0411]
gi|312900448|ref|ZP_07759755.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0470]
gi|312904540|ref|ZP_07763698.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0635]
gi|312906870|ref|ZP_07765867.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 512]
gi|312952750|ref|ZP_07771612.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0102]
gi|312978875|ref|ZP_07790601.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 516]
gi|227074654|gb|EEI12617.1| transcription antitermination protein NusB [Enterococcus faecalis
TX0104]
gi|227175755|gb|EEI56727.1| transcription antitermination protein NusB [Enterococcus faecalis
HH22]
gi|229305939|gb|EEN71935.1| transcription antitermination protein NusB [Enterococcus faecalis
ATCC 29200]
gi|229307989|gb|EEN73976.1| transcription antitermination protein NusB [Enterococcus faecalis
TX1322]
gi|291080075|gb|EFE17439.1| transcription antitermination factor NusB [Enterococcus faecalis
R712]
gi|291082720|gb|EFE19683.1| transcription antitermination factor NusB [Enterococcus faecalis
S613]
gi|306498902|gb|EFM68396.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0411]
gi|306499675|gb|EFM69038.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0109]
gi|306504360|gb|EFM73571.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0860]
gi|306507847|gb|EFM76975.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2134]
gi|306511335|gb|EFM80338.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0855]
gi|306515699|gb|EFM84226.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4248]
gi|310627124|gb|EFQ10407.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 512]
gi|310629266|gb|EFQ12549.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0102]
gi|310632053|gb|EFQ15336.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0635]
gi|311288312|gb|EFQ66868.1| transcription antitermination factor NusB [Enterococcus faecalis
DAPTO 516]
gi|311292424|gb|EFQ70980.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0470]
gi|315026954|gb|EFT38886.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2137]
gi|315029667|gb|EFT41599.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4000]
gi|315034207|gb|EFT46139.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0027]
gi|315144361|gb|EFT88377.1| transcription antitermination factor NusB [Enterococcus faecalis
TX2141]
gi|315147929|gb|EFT91945.1| transcription antitermination factor NusB [Enterococcus faecalis
TX4244]
gi|315149499|gb|EFT93515.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0012]
gi|315153054|gb|EFT97070.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0031]
gi|315156826|gb|EFU00843.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0043]
gi|315157613|gb|EFU01630.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0312]
gi|315162959|gb|EFU06976.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0645]
gi|315165157|gb|EFU09174.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1302]
gi|315168057|gb|EFU12074.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1341]
gi|315171915|gb|EFU15932.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1342]
gi|315173308|gb|EFU17325.1| transcription antitermination factor NusB [Enterococcus faecalis
TX1346]
gi|315574278|gb|EFU86469.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309B]
gi|315577406|gb|EFU89597.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0630]
gi|315581567|gb|EFU93758.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0309A]
gi|327534564|gb|AEA93398.1| transcription antitermination factor NusB [Enterococcus faecalis
OG1RF]
Length = 156
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ K+ K R R A+QAL+ +D + Y D V
Sbjct: 1 MKMEKRMSKTELTRHEIREKALQALFPLDFN---ADLTKQDAIDYALAYDNREIVSEDGE 57
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ + +++ GV RK +D +I++ L WS RL I ILR + E++ VP
Sbjct: 58 DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V ++E V ++ + KF+N VL V ++ + +
Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155
>gi|152968941|ref|YP_001334050.1| transcription antitermination protein NusB [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238893353|ref|YP_002918087.1| transcription antitermination protein NusB [Klebsiella pneumoniae
NTUH-K2044]
gi|330006911|ref|ZP_08305783.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
gi|166215693|sp|A6T5E9|NUSB_KLEP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|150953790|gb|ABR75820.1| transcription antitermination protein NusB [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545669|dbj|BAH62020.1| transcription antitermination protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|328535665|gb|EGF62114.1| transcription antitermination factor NusB [Klebsiella sp. MS 92-3]
Length = 139
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|119474641|ref|ZP_01614994.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2143]
gi|119450844|gb|EAW32077.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2143]
Length = 158
Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
NK++ + R AR +QALYQ + + +I ++ + + V
Sbjct: 6 SNKQEFNPAA-RRKARHYGMQALYQWQMTKYAVKDIELQFLA-----------DYDFSQV 53
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D+E+F I+H V + ++ + L LD I S+LR G ELI+ +P +
Sbjct: 54 DVEYFHDIVHHVPANLEELEAAFTPYLDRAMG--DLDPIELSLLRLGSYELIKRIDIPYK 111
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V+I+E V +A F D K+IN VLDK++ +
Sbjct: 112 VVINEAVSLAKKFGATDGHKYINGVLDKLAAQVRTIE 148
>gi|320540317|ref|ZP_08039969.1| transcription antitermination protein [Serratia symbiotica str.
Tucson]
gi|320029637|gb|EFW11664.1| transcription antitermination protein [Serratia symbiotica str.
Tucson]
Length = 138
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ T E VD+ +FR + GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLT-----------EQDVNGVDIAYFRELFSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+ L+ + L + ++LR + EL VP +V I+E + +A F
Sbjct: 60 GMLDTLMVPYLSRQ--LDELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + K+
Sbjct: 118 DSHKFVNGVLDKAAPTIRKKK 138
>gi|73748962|ref|YP_308201.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
gi|147669729|ref|YP_001214547.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
gi|289432959|ref|YP_003462832.1| NusB antitermination factor [Dehalococcoides sp. GT]
gi|119390765|sp|Q3ZYI9|NUSB_DEHSC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035888|sp|A5FQ51|NUSB_DEHSB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|73660678|emb|CAI83285.1| N utilization substance protein B [Dehalococcoides sp. CBDB1]
gi|146270677|gb|ABQ17669.1| NusB antitermination factor [Dehalococcoides sp. BAV1]
gi|288946679|gb|ADC74376.1| NusB antitermination factor [Dehalococcoides sp. GT]
Length = 143
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR +QALY+ D+ G + +++ T E+ ++E+
Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ENPQTEENVEFIFR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + V+ K +D I + W +L I ++LR + E+I + VPV+V I+E V
Sbjct: 50 LTNAVVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+A F +FIN VL VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132
>gi|327392955|dbj|BAK10377.1| N utilization substance protein B NusB [Pantoea ananatis AJ13355]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRSDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +R
Sbjct: 118 DSHKFVNGVLDKAGPQIRPQR 138
>gi|319794181|ref|YP_004155821.1| nusb antitermination factor [Variovorax paradoxus EPS]
gi|315596644|gb|ADU37710.1| NusB antitermination factor [Variovorax paradoxus EPS]
Length = 178
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 13/159 (8%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ R AR A+QALYQ + T+I D + +
Sbjct: 21 TSTGARKASAKSNRSRAREFALQALYQHLVGRNDPTDI-----------DHFTRDLAGFH 69
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + ++HG +D + +D LI L F + I +++ GV E C VP
Sbjct: 70 KADAAHYDALLHGSIDNAEQLDALIRPLLDR--KFEEISPIEHAVMWIGVYEFQNCPDVP 127
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V+++E + +A +F D K++NAVL+ ++ +
Sbjct: 128 WRVVLNECIELAKEFGGTDGHKYVNAVLNGLAPQLRPLE 166
>gi|298369791|ref|ZP_06981107.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
014 str. F0314]
gi|298281251|gb|EFI22740.1| transcription antitermination factor NusB [Neisseria sp. oral taxon
014 str. F0314]
Length = 142
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQALYQ + E + D F
Sbjct: 1 MKTPRRRARELAVQALYQAAVNNIPAAEAAKNIREMA-----------EFGKADEGLFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G D I L L I ++L EL P VII+E +
Sbjct: 50 LVIGTADNAAAYMQQIRPLLDRDE--KDLSPIERAVLLMACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LD+++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDRLAVQLRPNDP 138
>gi|146310545|ref|YP_001175619.1| transcription antitermination protein NusB [Enterobacter sp. 638]
gi|166918808|sp|A4W788|NUSB_ENT38 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145317421|gb|ABP59568.1| NusB antitermination factor [Enterobacter sp. 638]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELAKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + ++
Sbjct: 118 DSHKFVNGVLDKAAPAIRPRK 138
>gi|31793715|ref|NP_856208.1| transcription antitermination protein NusB [Mycobacterium bovis
AF2122/97]
gi|121638417|ref|YP_978641.1| transcription antitermination protein NusB [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|215427926|ref|ZP_03425845.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T92]
gi|215431478|ref|ZP_03429397.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis EAS054]
gi|219558534|ref|ZP_03537610.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T17]
gi|224990911|ref|YP_002645598.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|260187545|ref|ZP_05765019.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis CPHL_A]
gi|260201657|ref|ZP_05769148.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T46]
gi|260205850|ref|ZP_05773341.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis K85]
gi|289444068|ref|ZP_06433812.1| transcription antitermination factor NusB [Mycobacterium
tuberculosis T46]
gi|289448181|ref|ZP_06437925.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
CPHL_A]
gi|289570699|ref|ZP_06450926.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
T17]
gi|289575238|ref|ZP_06455465.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
K85]
gi|289751150|ref|ZP_06510528.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
T92]
gi|289754643|ref|ZP_06514021.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis EAS054]
gi|39931755|sp|Q7TYC8|NUSB_MYCBO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215697|sp|A1KLN0|NUSB_MYCBP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772648|sp|C1AF01|NUSB_MYCBT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|31619309|emb|CAD94747.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
bovis AF2122/97]
gi|121494065|emb|CAL72543.1| N utilization substance protein nusB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224774024|dbj|BAH26830.1| transcription antitermination protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289416987|gb|EFD14227.1| transcription antitermination factor NusB [Mycobacterium
tuberculosis T46]
gi|289421139|gb|EFD18340.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
CPHL_A]
gi|289539669|gb|EFD44247.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
K85]
gi|289544453|gb|EFD48101.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
T17]
gi|289691737|gb|EFD59166.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
T92]
gi|289695230|gb|EFD62659.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis EAS054]
Length = 156
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ ++ G S E++ +
Sbjct: 2 SDRKPVRGRHQARKRAVDLLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP-------- 53
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++
Sbjct: 54 YTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVV 112
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 113 DEAVQLAKELSTDDSPGFVNGVLGQV 138
>gi|319760371|ref|YP_004124309.1| N utilization substance protein B-like protein [Candidatus
Blochmannia vafer str. BVAF]
gi|318039085|gb|ADV33635.1| N utilization substance protein B-like protein [Candidatus
Blochmannia vafer str. BVAF]
Length = 140
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +ARL A+QALY EI + + + D+ +FR + G
Sbjct: 6 RRLARLCALQALYSWQFSKNDLIEIENYIVS-----------IQNIQNFDISYFRELYIG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V++ +D L+ + + S+L + EL +C+ +P +V+++E + +A
Sbjct: 55 VINCISDLDKLMIPY--LFRDLKTIGYVEYSVLLIALFELTQCYDIPYKVVMNEAIELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
F KFIN VL+K+ ++
Sbjct: 113 IFGSEKSYKFINGVLNKIVTEK 134
>gi|291616524|ref|YP_003519266.1| NusB [Pantoea ananatis LMG 20103]
gi|291151554|gb|ADD76138.1| NusB [Pantoea ananatis LMG 20103]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRVSLYELSKRSDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +R
Sbjct: 118 DSHKFVNGVLDKAGPQIRPQR 138
>gi|260596785|ref|YP_003209356.1| transcription antitermination protein NusB [Cronobacter turicensis
z3032]
gi|260215962|emb|CBA28587.1| N utilization substance protein B homolog [Cronobacter turicensis
z3032]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 GYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPYIRPNK 138
>gi|295839941|ref|ZP_06826874.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
gi|197696775|gb|EDY43708.1| transcription antitermination factor NusB [Streptomyces sp. SPB74]
Length = 144
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEADQRGTDVLTVLADWVRHSRSDTQQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID +I+ + W R+ ++ +I+R G EL+ P V++ E V
Sbjct: 53 VEGYAAHARRIDEVIAKY-SVDWPLDRMPVVDRNIVRLGAHELVWVDGTPDAVVMDEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRF 132
>gi|329898127|ref|ZP_08272329.1| Transcription termination protein NusB [gamma proteobacterium
IMCC3088]
gi|328920907|gb|EGG28339.1| Transcription termination protein NusB [gamma proteobacterium
IMCC3088]
Length = 147
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 13/152 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R AR VQALY+ + S+T+I +E+ ++ + HVDLE+F+
Sbjct: 8 ISAERHKARHYTVQALYRWHMNEQSSTDIEAEF-----------RIDYDFSHVDLEYFQA 56
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++HGV+ ID + L K LD + +ILR G+ EL E VP +V+I+E V
Sbjct: 57 LLHGVVKTHASIDAYLEPLLDRKL--DDLDAVELAILRMGLFELKERLDVPFKVVINEAV 114
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ F D K+IN VLDK +R G
Sbjct: 115 SLTRKFGATDGHKYINGVLDKAARGLRTVELG 146
>gi|315031736|gb|EFT43668.1| transcription antitermination factor NusB [Enterococcus faecalis
TX0017]
Length = 156
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ K+ K R R A+QAL+ +D + Y D V
Sbjct: 1 MKMEKRMSKTELTRHEIREKALQALFPLDFN---ADLTKQDAIDYALAYDNREIVSEDSE 57
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ + +++ GV RK +D +I++ L WS RL I ILR + E++ VP
Sbjct: 58 DLVPTYLDLLVGGVCSRKAELDEVITNHLGNNWSMQRLAKIDIVILRLAIFEMLYVSDVP 117
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V ++E V ++ + KF+N VL V ++ + +
Sbjct: 118 NIVALNEAVELSKKYSDDRSRKFVNGVLSNVMKEIDSE 155
>gi|294788786|ref|ZP_06754027.1| transcription antitermination factor NusB [Simonsiella muelleri
ATCC 29453]
gi|294483268|gb|EFG30954.1| transcription antitermination factor NusB [Simonsiella muelleri
ATCC 29453]
Length = 156
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 13/157 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR VQALYQ + EI + + + + D E F +
Sbjct: 8 KSPRRRAREFVVQALYQAALNQKPAPEIANFLREH-----------TDFKRADAELFDAL 56
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G ++ +LI L ++ I +IL EL P V+I+E +
Sbjct: 57 FFGTNANQRAYMMLIRPHLDRDEKL--INPIERAILLMATHELKTMPETPHAVVINEAIE 114
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+ F D KF+N++LDK++ + + +
Sbjct: 115 VTKTFGGTDSHKFVNSILDKLAVEIRENLQAEQAESS 151
>gi|296170770|ref|ZP_06852342.1| N utilization substance protein B [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894585|gb|EFG74322.1| N utilization substance protein B [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 168
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+ + R AR AV L++ + G E++ T + +
Sbjct: 2 SRPARPVKGRHQARKRAVDLLFEAEARGLGPAEVVDVRATLA--------AANPDVAPLQ 53
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ GV + HID LISS L + W+ RL + +ILR V EL+ VP V
Sbjct: 54 PYTVAAARGVGEHAAHIDDLISSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVA 112
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ E V +A + + P F+N VL +V
Sbjct: 113 VDEAVQLAKELSTDESPAFVNGVLGQV 139
>gi|311069033|ref|YP_003973956.1| transcription antitermination protein NusB [Bacillus atrophaeus
1942]
gi|310869550|gb|ADP33025.1| transcription antitermination protein NusB [Bacillus atrophaeus
1942]
Length = 131
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + E I + +F +++
Sbjct: 2 KRRTAREKALQALFQIDVSDIAPNEAIEHALDDQKTD---------------PFFEELVY 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+D + +D +IS L W R+ + ++LR V E++ +PV V ++E + +A
Sbjct: 47 GVIDHQVQLDEMISKHLVN-WKLDRIANVDRAVLRLAVYEMVYVEDIPVNVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F KF+N VL + E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129
>gi|304395478|ref|ZP_07377361.1| NusB antitermination factor [Pantoea sp. aB]
gi|304356772|gb|EFM21136.1| NusB antitermination factor [Pantoea sp. aB]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSNNDIADVEYQFLA-----------EQDVKDVDITYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLYELSKRNDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + R
Sbjct: 118 DSHKFVNGVLDKAGPQIRPTR 138
>gi|319639180|ref|ZP_07993931.1| N utilization substance protein B [Neisseria mucosa C102]
gi|317399364|gb|EFV80034.1| N utilization substance protein B [Neisseria mucosa C102]
Length = 142
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQA+YQ I + EI + S ++D E F
Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKN-----------IHELSQSSNMDEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + IS L L I ++L EL P VII+E +
Sbjct: 50 LFFGAQTHAEEYMEKISPLLDRDE--KDLSPIERAVLLVACHELSTMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LD+++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEP 138
>gi|253995875|ref|YP_003047939.1| NusB antitermination factor [Methylotenera mobilis JLW8]
gi|253982554|gb|ACT47412.1| NusB antitermination factor [Methylotenera mobilis JLW8]
Length = 178
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 20/167 (11%)
Query: 2 TIQDNKKDLKLS-------HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T KK S R +R ++A+Y+ + +++ +
Sbjct: 19 TTASAKKPASRSGGKKSGSQNRRKSRELVLKAVYRGMLNDSELSQVFR-----------D 67
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ + Y D +F+ ++ V + ID I + + L + +ILR E
Sbjct: 68 MRDDPDYNKADEAYFKHLLQAVTENLTAIDGKIVGFIDR--TLEELSPVEHAILRIAGCE 125
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L+ S+P V+I+E V +A F D K+IN VLDK +
Sbjct: 126 LMFDLSIPYRVVINEGVELAKVFGGTDGHKYINGVLDKFAADVRAAE 172
>gi|294102024|ref|YP_003553882.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
gi|293617004|gb|ADE57158.1| NusB antitermination factor [Aminobacterium colombiense DSM 12261]
Length = 158
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R +R A+Q LY +DI ++ + Y F + V + +++
Sbjct: 8 QKRRRSREIAIQILYALDIRNS--EKVNEMFSLYPFGDEEPDVV---------SYASLLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + + ID LI + W R+ + + LR + E I +PV V ISE V +
Sbjct: 57 KGVWEARFEIDTLIRKHVVG-WRPERMVAVDRAALRLAIYEGIIKQMIPVPVAISEAVEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A F + +F+N VL K+ R
Sbjct: 116 AKTFGTDESGRFVNGVLGKIVR 137
>gi|91774848|ref|YP_544604.1| NusB antitermination factor [Methylobacillus flagellatus KT]
gi|119390784|sp|Q1H424|NUSB_METFK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91708835|gb|ABE48763.1| NusB antitermination factor [Methylobacillus flagellatus KT]
Length = 154
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + K K R +R ++ +Y + T+ II EL +
Sbjct: 1 MPAEAKKPAPKAGRSRRKSRELVLKGIYLGLMNQKDTSVIIR-----------ELADDPD 49
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D E+FR ++ GV + +D ++ L + S L I +IL ELI +
Sbjct: 50 FDRADYEYFRQLLEGVAESIDELDARLAGLLDRQ--VSELSPIEHAILCIAAYELIHDVT 107
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P V I+E V +A + D K++N VLDK++ +
Sbjct: 108 IPYRVAINEGVELAKLYGGTDGHKYVNGVLDKIAAEARPDE 148
>gi|224370206|ref|YP_002604370.1| NusB [Desulfobacterium autotrophicum HRM2]
gi|259514822|sp|C0QKW6|NUSB_DESAH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|223692923|gb|ACN16206.1| NusB [Desulfobacterium autotrophicum HRM2]
Length = 143
Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QALY D+ S E+++ + + E +F ++ G
Sbjct: 4 RRQARELALQALYYFDVDKGSPDELLALFCSNF---------EDRIDESIRPFFLDLVKG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + +D L++ + W SR+ ++ +I+R + E+++ +P V I+E V I
Sbjct: 55 VTQARAEVDDLMNRS-SSNWKVSRMPIVDRNIMRMAIFEMLKQPDIPPTVSINEAVEIGK 113
Query: 136 DFFYGDEPKFINAVLDKV 153
F FIN VLDK+
Sbjct: 114 RFGTRGSGAFINGVLDKI 131
>gi|319779127|ref|YP_004130040.1| Transcription termination protein NusB [Taylorella equigenitalis
MCE9]
gi|317109151|gb|ADU91897.1| Transcription termination protein NusB [Taylorella equigenitalis
MCE9]
Length = 144
Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R AR VQ LY + S D+ + + + DL ++
Sbjct: 7 TSARHTARELVVQGLYSWLLSNESQDIA---------SVDSHIREQENFDFADLNLYKTS 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ + + ++ S L + +I+ EL+ P V+I+E +
Sbjct: 58 LYGVIQNADSLREEFAPFISRSAS--ELSPVEHAIMLLATYELLHFPETPYRVVINEAIE 115
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A +F D KFIN LDK++ K +
Sbjct: 116 LAKEFGGTDGFKFINGALDKLAEKIRVHE 144
>gi|254556506|ref|YP_003062923.1| transcription antitermination protein NusB [Lactobacillus plantarum
JDM1]
gi|308180449|ref|YP_003924577.1| transcription antitermination protein NusB [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254045433|gb|ACT62226.1| transcription antitermination protein NusB [Lactobacillus plantarum
JDM1]
gi|308045940|gb|ADN98483.1| transcription antitermination protein NusB [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 139
Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A QAL+ ++ + + + L+ E +
Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQL---------LNPEEADAVEIPAYLST 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + +D I L++KWS RL ILR EL VP +V ++E +
Sbjct: 52 LVTGVREHQAELDAQIQPYLSQKWSLDRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ F KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137
>gi|238787982|ref|ZP_04631778.1| N utilization substance protein B [Yersinia frederiksenii ATCC
33641]
gi|238723930|gb|EEQ15574.1| N utilization substance protein B [Yersinia frederiksenii ATCC
33641]
Length = 138
Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK++ K+
Sbjct: 118 DSHKFVNGVLDKIAPMVRKKK 138
>gi|302392489|ref|YP_003828309.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
gi|302204566|gb|ADL13244.1| NusB antitermination factor [Acetohalobium arabaticum DSM 5501]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AVQ LYQIDI + + + E + II
Sbjct: 6 SRHEARKIAVQTLYQIDINDEGLEKNLEMLTNRIEGLELEDT-----------FLEEIIT 54
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ID ++ E W SR+ + +ILR + E++ +P+EV I E V +A
Sbjct: 55 GTYQNLSEIDKELNES-AEGWKVSRMGKVDRNILRLAIYEILYVDDIPIEVSIDEAVELA 113
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
+F PKFIN VL +V K+E
Sbjct: 114 KEFIADKSPKFINGVLGRVVSKQEE 138
>gi|254293744|ref|YP_003059767.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
gi|254042275|gb|ACT59070.1| NusB antitermination factor [Hirschia baltica ATCC 49814]
Length = 163
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 1 MTIQD--NKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT + +K + + R ARLAAVQALYQI+ G + +I +Y D E
Sbjct: 1 MTNEPAIDKDAARKLRKLSRSGARLAAVQALYQIEQTGRAGRAVIEDYCEDGIGLDDEGR 60
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
D E FR + GV++ I+L I L + W RLD +ILRAGV EL+
Sbjct: 61 PIEA---ADPEIFRNTVEGVIESLDDINLAIVKRLADGWKIERLDATSRAILRAGVYELM 117
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ +P ++I+ EYV IAH FF EP+FINA+L+ V K +
Sbjct: 118 KRDDLPAQIILDEYVSIAHAFFDDAEPRFINALLENVREDVRDKPA 163
>gi|297195528|ref|ZP_06912926.1| transcription antitermination protein NusB [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152834|gb|EFH32015.1| transcription antitermination protein NusB [Streptomyces
pristinaespiralis ATCC 25486]
Length = 142
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G + +++++ + + + E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGATVHTVLADWVRHARTDERQ--------PPVAEYTMDL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID LI + W+ R+ ++ +ILR G EL+ P V+I E V
Sbjct: 53 VEGYAEHADRIDELI-ATYAVGWTIDRMPVVDRNILRLGAYELVWKDETPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L +
Sbjct: 112 LAKEFSTDESPAFVNGLLGRF 132
>gi|190572778|ref|YP_001970623.1| transcription antitermination protein NusB [Stenotrophomonas
maltophilia K279a]
gi|229620370|sp|B2FNL4|NUSB_STRMK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|190010700|emb|CAQ44309.1| putative N utilization substance protein B (protein nusb)
[Stenotrophomonas maltophilia K279a]
Length = 159
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 1 MTIQDNKKDL-KLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD 52
M K K R R AR AVQA+Y I G + +I+++
Sbjct: 1 MNKNTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQF-------- 52
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
E DL +F ++HGV+D ++ ID + L +D I ++LR
Sbjct: 53 ---AHEQAREIADLAYFEALLHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAG 107
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
EL VP V+I+E + A F ++N VLD+ + + SG
Sbjct: 108 YELRYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESG 158
>gi|29654709|ref|NP_820401.1| transcription antitermination protein NusB [Coxiella burnetii RSA
493]
gi|161829811|ref|YP_001597256.1| transcription antitermination protein NusB [Coxiella burnetii RSA
331]
gi|212212219|ref|YP_002303155.1| transcription antitermination protein NusB [Coxiella burnetii
CbuG_Q212]
gi|39931899|sp|Q83BT5|NUSB_COXBU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035886|sp|A9KBN6|NUSB_COXBN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035887|sp|A9N8T6|NUSB_COXBR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238055350|sp|B6IZ82|NUSB_COXB2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|29541977|gb|AAO90915.1| N utilization substance protein B [Coxiella burnetii RSA 493]
gi|161761678|gb|ABX77320.1| transcription antitermination factor NusB [Coxiella burnetii RSA
331]
gi|212010629|gb|ACJ18010.1| N utilization substance protein B [Coxiella burnetii CbuG_Q212]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR A+QALYQ +IS++ E D+ +F+
Sbjct: 2 INKTRHNARRYALQALYQWFFCETKPDALISQF-----------MEEHDLSDTDVAYFKE 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G + ID L+++ L S L+ + S+LR + EL+ VP +V+I E +
Sbjct: 51 VVTGTIQHVAIIDELMTAHLDR--KISALNPVELSVLRLSIYELLHRKEVPYKVVIDEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +F K++NA+LD +S +
Sbjct: 109 ELVKEFGAEAGHKYVNAILDVLSSEIR 135
>gi|206577191|ref|YP_002240116.1| transcription antitermination factor NusB [Klebsiella pneumoniae
342]
gi|288936865|ref|YP_003440924.1| NusB antitermination factor [Klebsiella variicola At-22]
gi|290510079|ref|ZP_06549449.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
gi|238055476|sp|B5Y0X5|NUSB_KLEP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|206566249|gb|ACI08025.1| transcription antitermination factor NusB [Klebsiella pneumoniae
342]
gi|288891574|gb|ADC59892.1| NusB antitermination factor [Klebsiella variicola At-22]
gi|289776795|gb|EFD84793.1| transcription antitermination factor NusB [Klebsiella sp. 1_1_55]
Length = 139
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|307718673|ref|YP_003874205.1| N-utilization substance protein B [Spirochaeta thermophila DSM
6192]
gi|306532398|gb|ADN01932.1| N-utilization substance protein B [Spirochaeta thermophila DSM
6192]
gi|315185797|gb|EFU19563.1| NusB antitermination factor [Spirochaeta thermophila DSM 6578]
Length = 136
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A QAL+ D G E+ S + + ++++ G
Sbjct: 4 RRKARILAFQALFASDGGGGDGLEVFSFPWA-----------DGEIPEEVRTFAQLLLRG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ +D LI L E W F R+ +ILR V L+ +P VII E V IA
Sbjct: 53 TLEHLPEVDDLIKKHL-EHWDFGRIARTDRAILRMSVYALLYQKEIPARVIIDEAVEIAK 111
Query: 136 DFFYGDEPKFINAVLDKVSR 155
F D +F+N VLD + +
Sbjct: 112 QFGTQDSYRFVNGVLDAIRK 131
>gi|22124909|ref|NP_668332.1| transcription antitermination protein NusB [Yersinia pestis KIM 10]
gi|45440599|ref|NP_992138.1| transcription antitermination protein NusB [Yersinia pestis biovar
Microtus str. 91001]
gi|51595286|ref|YP_069477.1| transcription antitermination protein NusB [Yersinia
pseudotuberculosis IP 32953]
gi|108808666|ref|YP_652582.1| transcription antitermination protein NusB [Yersinia pestis
Antiqua]
gi|108811072|ref|YP_646839.1| transcription antitermination protein NusB [Yersinia pestis
Nepal516]
gi|145600075|ref|YP_001164151.1| transcription antitermination protein NusB [Yersinia pestis
Pestoides F]
gi|149364973|ref|ZP_01887008.1| N utilization substance protein B [Yersinia pestis CA88-4125]
gi|153950126|ref|YP_001402075.1| transcription antitermination protein NusB [Yersinia
pseudotuberculosis IP 31758]
gi|162421924|ref|YP_001607525.1| transcription antitermination protein NusB [Yersinia pestis Angola]
gi|165926545|ref|ZP_02222377.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165935993|ref|ZP_02224563.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011125|ref|ZP_02232023.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212965|ref|ZP_02239000.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398502|ref|ZP_02304026.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421645|ref|ZP_02313398.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423478|ref|ZP_02315231.1| transcription antitermination factor NusB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170025473|ref|YP_001721978.1| transcription antitermination protein NusB [Yersinia
pseudotuberculosis YPIII]
gi|186894303|ref|YP_001871415.1| transcription antitermination protein NusB [Yersinia
pseudotuberculosis PB1/+]
gi|218930211|ref|YP_002348086.1| transcription antitermination protein NusB [Yersinia pestis CO92]
gi|229838786|ref|ZP_04458945.1| transcription antitermination protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896060|ref|ZP_04511230.1| transcription antitermination protein [Yersinia pestis Pestoides A]
gi|229899354|ref|ZP_04514497.1| transcription antitermination protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901299|ref|ZP_04516421.1| transcription antitermination protein [Yersinia pestis Nepal516]
gi|270489488|ref|ZP_06206562.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
gi|294504909|ref|YP_003568971.1| transcription antitermination protein NusB [Yersinia pestis
Z176003]
gi|22095956|sp|Q8ZC42|NUSB_YERPE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81640219|sp|Q66DV7|NUSB_YERPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390849|sp|Q1C4I5|NUSB_YERPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390850|sp|Q1CL91|NUSB_YERPN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215730|sp|A4TPG6|NUSB_YERPP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166918813|sp|A7FLE7|NUSB_YERP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238687286|sp|A9R2J9|NUSB_YERPG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238688409|sp|B1JIE1|NUSB_YERPY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238691415|sp|B2K6T4|NUSB_YERPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21957745|gb|AAM84583.1|AE013703_13 transcription termination; L factor [Yersinia pestis KIM 10]
gi|45435456|gb|AAS61015.1| N utilization substance protein B [Yersinia pestis biovar Microtus
str. 91001]
gi|51588568|emb|CAH20176.1| transcription termination; L factor [Yersinia pseudotuberculosis IP
32953]
gi|108774720|gb|ABG17239.1| N utilization substance protein B [Yersinia pestis Nepal516]
gi|108780579|gb|ABG14637.1| N utilization substance protein B [Yersinia pestis Antiqua]
gi|115348822|emb|CAL21776.1| N utilization substance protein B [Yersinia pestis CO92]
gi|145211771|gb|ABP41178.1| N utilization substance protein B [Yersinia pestis Pestoides F]
gi|149291386|gb|EDM41460.1| N utilization substance protein B [Yersinia pestis CA88-4125]
gi|152961621|gb|ABS49082.1| transcription antitermination factor NusB [Yersinia
pseudotuberculosis IP 31758]
gi|162354739|gb|ABX88687.1| transcription antitermination factor NusB [Yersinia pestis Angola]
gi|165916138|gb|EDR34745.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921473|gb|EDR38670.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990125|gb|EDR42426.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205752|gb|EDR50232.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960564|gb|EDR56585.1| transcription antitermination factor NusB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051006|gb|EDR62414.1| transcription antitermination factor NusB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057648|gb|EDR67394.1| transcription antitermination factor NusB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752007|gb|ACA69525.1| NusB antitermination factor [Yersinia pseudotuberculosis YPIII]
gi|186697329|gb|ACC87958.1| NusB antitermination factor [Yersinia pseudotuberculosis PB1/+]
gi|229681228|gb|EEO77322.1| transcription antitermination protein [Yersinia pestis Nepal516]
gi|229687756|gb|EEO79829.1| transcription antitermination protein [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695152|gb|EEO85199.1| transcription antitermination protein [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700983|gb|EEO89012.1| transcription antitermination protein [Yersinia pestis Pestoides A]
gi|262362975|gb|ACY59696.1| transcription antitermination protein NusB [Yersinia pestis
D106004]
gi|262366895|gb|ACY63452.1| transcription antitermination protein NusB [Yersinia pestis
D182038]
gi|270337992|gb|EFA48769.1| transcription antitermination factor NusB [Yersinia pestis KIM D27]
gi|294355368|gb|ADE65709.1| transcription antitermination protein NusB [Yersinia pestis
Z176003]
gi|320016368|gb|ADV99939.1| transcription antitermination protein [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ ++
Sbjct: 118 DSHKFVNGVLDKVAPTVRKRK 138
>gi|116327424|ref|YP_797144.1| transcription antitermination protein NusB [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
gi|116331982|ref|YP_801700.1| transcription antitermination protein NusB [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
gi|122280285|sp|Q04Q78|NUSB_LEPBJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|122284775|sp|Q054N4|NUSB_LEPBL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116120168|gb|ABJ78211.1| Transcription antitermination protein [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116125671|gb|ABJ76942.1| Transcription antitermination protein [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R AV ALYQ+++ G E++ + + ++ I
Sbjct: 1 MSARRTSREIAVMALYQLELTGPPLKEVLKFKW-----------YDKKTEPEERDFAVSI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ ++ ID LI ++ W FSR+ ++ +ILR V L+ VP V I E V
Sbjct: 50 VNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSVFALLYSWEVPKNVTIDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ +F + +F+N +LD + + E
Sbjct: 109 LTKEFESEESARFVNGILDAILKNE 133
>gi|317492962|ref|ZP_07951386.1| transcription antitermination factor NusB [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316919084|gb|EFV40419.1| transcription antitermination factor NusB [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 139
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY I ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQISKNDIADVEYQFLS-----------EQDVKDVDISYFRELLSGVATNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+++D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 EYLDGLMAPVLSRQ--LEELGQVERAVLRISLFELSKREDVPYKVAINEGIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131
>gi|218888175|ref|YP_002437496.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
gi|226738898|sp|B8DJF1|NUSB_DESVM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|218759129|gb|ACL10028.1| NusB antitermination factor [Desulfovibrio vulgaris str. 'Miyazaki
F']
Length = 165
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 15/175 (8%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC-----ADTEL 55
M Q K R R A Q LY + ++ + A+ E
Sbjct: 1 MANQGKKPT------RRSERALAFQVLYGLSFTPATSEGALRAAYAASPDVADRNAEDEK 54
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ +IHGV + +D + S ++ W R+ + ++LR V E+
Sbjct: 55 ADRQAPATAPQGYAWEVIHGVWKTQAELDEAV-SGFSQNWRVERMGRVELTLLRIAVYEM 113
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ VP +V ++E + ++ F + FIN +LD V+R SG ++ Q
Sbjct: 114 LFRDDVPAKVAMNEAIELSKQFGDDNSRGFINGILDAVAR---AVESGRLTPKGQ 165
>gi|221310355|ref|ZP_03592202.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. 168]
gi|221314679|ref|ZP_03596484.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. NCIB 3610]
gi|221319602|ref|ZP_03600896.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. JH642]
gi|221323878|ref|ZP_03605172.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. SMY]
gi|255767541|ref|NP_390312.2| transcription antitermination protein NusB [Bacillus subtilis
subsp. subtilis str. 168]
gi|321311916|ref|YP_004204203.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
gi|251757301|sp|P54520|NUSB_BACSU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|225185169|emb|CAB14363.2| transcription termination factor NusB [Bacillus subtilis subsp.
subtilis str. 168]
gi|291484874|dbj|BAI85949.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. natto BEST195]
gi|320018190|gb|ADV93176.1| transcription antitermination protein NusB [Bacillus subtilis BSn5]
Length = 131
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + E I +F ++H
Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDE---------------EKTDPFFEQLVH 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A
Sbjct: 47 GVLEHQDQLDEMISKHLVN-WKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F KF+N VL + E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129
>gi|297616617|ref|YP_003701776.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
12680]
gi|297144454|gb|ADI01211.1| NusB antitermination factor [Syntrophothermus lipocalidus DSM
12680]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR A + L+Q+D+ G S + + E+ L + R ++
Sbjct: 2 SRSLARETAFKVLFQVDLAGASPRDALQHLTA-----------ETPLADRYLAFARELVD 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ + ID IS + +WS SR+ + +I+R V E++ PV V+I+E V +A
Sbjct: 51 KTLEHVKTIDSYISKY-SPEWSISRMATVDRNIMRMAVCEMLYTEIDPV-VVINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + FINA+LD++ ++
Sbjct: 109 KKYGDENSSSFINAILDRIMGEK 131
>gi|291326906|ref|ZP_06126293.2| transcription antitermination factor NusB [Providencia rettgeri DSM
1131]
gi|291312467|gb|EFE52920.1| transcription antitermination factor NusB [Providencia rettgeri DSM
1131]
Length = 149
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G E+ E+ E VD+ +FR ++ GV
Sbjct: 22 ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELLSGVATNA 70
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 71 TKLDQLMAPYLSRQ--LEELGQVEKAILRVSMFELSFREDVPYKVAINEGIELAKVFGAE 128
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + K+
Sbjct: 129 DSHKFVNGVLDKAAPAVRRKK 149
>gi|118470676|ref|YP_887353.1| transcription antitermination protein NusB [Mycobacterium smegmatis
str. MC2 155]
gi|166215698|sp|A0QWR5|NUSB_MYCS2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|118171963|gb|ABK72859.1| transcription antitermination factor NusB [Mycobacterium smegmatis
str. MC2 155]
Length = 160
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR AV L++ + G + + D + + ++
Sbjct: 8 RGRHQARKRAVDLLFEAEARGLTAEAVADSRAALAEDQDDVAPLNP--------YTVLVA 59
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + HID LIS+ L + W+ RL + +ILR V EL+ VP V + E V +
Sbjct: 60 RGVTEHAAHIDDLISAHL-QGWTLERLPAVDRAILRVAVWELLHAEDVPEPVAVDEAVEL 118
Query: 134 AHDFFYGDEPKFINAVLDKV 153
A + + P F+N VL +V
Sbjct: 119 AKELSTDESPGFVNGVLGQV 138
>gi|270308448|ref|YP_003330506.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
gi|270154340|gb|ACZ62178.1| transcription antitermination factor NusB [Dehalococcoides sp. VS]
Length = 143
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR +QALY+ D+ G + +++ T E+ + E+
Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLRRLLT-----------ETPQTEENTEFIFR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + V+ K+ +D I + W +L I ++LR + E+I + VPV+V I+E V
Sbjct: 50 LTNAVVKHKELLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPVKVAINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+A F +FIN VL VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132
>gi|108799326|ref|YP_639523.1| transcription antitermination protein NusB [Mycobacterium sp. MCS]
gi|119868442|ref|YP_938394.1| transcription antitermination protein NusB [Mycobacterium sp. KMS]
gi|126434984|ref|YP_001070675.1| transcription antitermination protein NusB [Mycobacterium sp. JLS]
gi|119390786|sp|Q1B9G7|NUSB_MYCSS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215699|sp|A3PZ57|NUSB_MYCSJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215700|sp|A1UFJ6|NUSB_MYCSK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|108769745|gb|ABG08467.1| NusB antitermination factor [Mycobacterium sp. MCS]
gi|119694531|gb|ABL91604.1| NusB antitermination factor [Mycobacterium sp. KMS]
gi|126234784|gb|ABN98184.1| NusB antitermination factor [Mycobacterium sp. JLS]
Length = 162
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D + R AR AV L++ + G + E+ + +L +
Sbjct: 2 SDRRPDRGRHQARKRAVDLLFEAEARGLTAAEVATSR--------NKLAGTQPDVTALNP 53
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV D + HID LIS+ L + W+ RL + +ILR V EL+ VP V +
Sbjct: 54 YTVTVARGVTDHRDHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAV 112
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A D P F+N VL +V
Sbjct: 113 DEAVELAKQLSTDDSPGFVNGVLGQV 138
>gi|238760660|ref|ZP_04621785.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
gi|238701125|gb|EEP93717.1| N utilization substance protein B [Yersinia aldovae ATCC 35236]
Length = 138
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVHA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMEPFLSRQ--LEELGQVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ K+
Sbjct: 118 DSHKFVNGVLDKVAPTVRKKK 138
>gi|229493670|ref|ZP_04387455.1| transcription antitermination factor NusB [Rhodococcus erythropolis
SK121]
gi|229319631|gb|EEN85467.1| transcription antitermination factor NusB [Rhodococcus erythropolis
SK121]
Length = 165
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + + ++L V+ + +
Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVALA--------SERSDLSVKDDAVAPVAAYTV 57
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E
Sbjct: 58 TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A D P F+N +L +V
Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140
>gi|258654403|ref|YP_003203559.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
gi|258557628|gb|ACV80570.1| NusB antitermination factor [Nakamurella multipartita DSM 44233]
Length = 144
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 7/142 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+ L+ + G ++SE D ++ +
Sbjct: 1 MSARSKSRKRALDVLFAAEARGVDPLVVLSERMEEPTGPDRHS------WTPIGDYAEGL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ + +D L++ + W+ R+ + +ILR V EL+ VP V+++E V
Sbjct: 55 VRGFVEHQDRVDTLLAEH-SRGWTVDRMPAVDRAILRIAVYELLYSTEVPPAVVVNEAVD 113
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
A D P+F+N VL +++
Sbjct: 114 SAKILSTDDSPRFVNGVLGQIA 135
>gi|162455551|ref|YP_001617918.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
gi|189035908|sp|A9ET18|NUSB_SORC5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|161166133|emb|CAN97438.1| N utilization substance protein B [Sorangium cellulosum 'So ce 56']
Length = 140
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R AA+Q L+ ++ G S +++ + E+ + +
Sbjct: 1 MGARSTGREAALQMLFAVEAGGSSAPRVVATFWR-----------ETPGDPEGRAYADEV 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + +D I + W R+ + ++LR G EL+ VP VI+ E V
Sbjct: 50 VVGVAEDLAAVDEAIRKA-STNWRLERMARVDRNVLRLGAWELMNRPEVPRAVILDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+A + + F+N VLD+++
Sbjct: 109 LAKRYGSEESGAFVNGVLDRIAENL 133
>gi|120403637|ref|YP_953466.1| transcription antitermination protein NusB [Mycobacterium
vanbaalenii PYR-1]
gi|166215702|sp|A1T8G0|NUSB_MYCVP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119956455|gb|ABM13460.1| NusB antitermination factor [Mycobacterium vanbaalenii PYR-1]
Length = 163
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 8/146 (5%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ + G + E+ ++ +
Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALAEKRTDDIATLNP------- 54
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV HID LIS+ L + W+ RL + +ILR V EL+ VP V +
Sbjct: 55 YTVTVAQGVTAHAAHIDDLISAHL-QGWTLDRLPAVDRAILRVAVWELLHAEDVPEPVAV 113
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A D P F+N VL +V
Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139
>gi|298245582|ref|ZP_06969388.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
gi|297553063|gb|EFH86928.1| NusB antitermination factor [Ktedonobacter racemifer DSM 44963]
Length = 147
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR+ A+Q LY+ D++ EI+ + R +E+ +
Sbjct: 1 MPGIRRQARMVALQTLYEYDMVHHDPLEILQRHAEERN-----------LHAKVVEYAQE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV ID I S +W ++ + +ILR + E++ ++VP + I+E V
Sbjct: 50 LAEGVCKHLADIDAHIQSA-AREWPLQQMARVDKNILRLAIYEILFNNTVPAKAAINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A F +FIN VL + + + + + +
Sbjct: 109 ELAKLFGSDTSSRFINGVLGTIFNRAQQQ----PTPKAE 143
>gi|220702382|pdb|3D3B|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
gi|220702384|pdb|3D3C|A Chain A, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
gi|220702386|pdb|3D3C|B Chain B, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex.
gi|220702388|pdb|3D3C|C Chain C, Structural And Functional Analysis Of The E. Coli Nusb-S10
Transcription Antitermination Complex
Length = 141
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 61
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 62 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 120 DSHKFVNGVLDKAAPVIRPNK 140
>gi|90415724|ref|ZP_01223658.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2207]
gi|90333047|gb|EAS48217.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2207]
Length = 146
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR VQALY D+ +I +E+ V++ VD E F
Sbjct: 1 MSKPKMRQKARRLLVQALYSWDMGKTDLIDIEAEF-----------HVDNNMATVDTELF 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+ GV ID L +LD + +ILR E++ VP +V+I+E
Sbjct: 50 HEILFGVPKHMTEIDAAYEPYLDRDQD--QLDPVSQAILRLSTYEMLHRIDVPYKVVINE 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V +A F D K+IN +LD+V+ +
Sbjct: 108 GVNLAKTFGPTDAFKYINGILDRVAIAKRSIEVAA 142
>gi|16763798|ref|NP_459413.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56414427|ref|YP_151502.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62179029|ref|YP_215446.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|157146968|ref|YP_001454287.1| transcription antitermination protein NusB [Citrobacter koseri ATCC
BAA-895]
gi|161504397|ref|YP_001571509.1| transcription antitermination protein NusB [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161615394|ref|YP_001589359.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167551771|ref|ZP_02345524.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992268|ref|ZP_02573366.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168232391|ref|ZP_02657449.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168237531|ref|ZP_02662589.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240241|ref|ZP_02665173.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168261149|ref|ZP_02683122.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168465508|ref|ZP_02699390.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168818971|ref|ZP_02830971.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194445003|ref|YP_002039660.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194449230|ref|YP_002044453.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194470791|ref|ZP_03076775.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194735835|ref|YP_002113451.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249816|ref|YP_002145400.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197265909|ref|ZP_03165983.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197363347|ref|YP_002142984.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198243030|ref|YP_002214372.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200390221|ref|ZP_03216832.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204926733|ref|ZP_03217935.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205351729|ref|YP_002225530.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207855899|ref|YP_002242550.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224582256|ref|YP_002636054.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|237730392|ref|ZP_04560873.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
gi|238911449|ref|ZP_04655286.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|283834267|ref|ZP_06354008.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
29220]
gi|22095957|sp|Q8ZRD3|NUSB_SALTY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|75484594|sp|Q57SE6|NUSB_SALCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81599425|sp|Q5PFS9|NUSB_SALPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215680|sp|A8AK38|NUSB_CITK8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035901|sp|A9MM45|NUSB_SALAR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035902|sp|A9MX13|NUSB_SALPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689944|sp|B5BDB4|NUSB_SALPK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689999|sp|B5EXF9|NUSB_SALA4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690220|sp|B4T8Q9|NUSB_SALHS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690323|sp|B5FKS3|NUSB_SALDC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690385|sp|B5QTG6|NUSB_SALEP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690477|sp|B5R6R9|NUSB_SALG2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690694|sp|B4TM98|NUSB_SALSV RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238693540|sp|B4SWR0|NUSB_SALNS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772653|sp|C0Q7U3|NUSB_SALPC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|16418923|gb|AAL19372.1| transcription termination; L factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|56128684|gb|AAV78190.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62126662|gb|AAX64365.1| transcription termination; L factor [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157084173|gb|ABV13851.1| hypothetical protein CKO_02745 [Citrobacter koseri ATCC BAA-895]
gi|160865744|gb|ABX22367.1| hypothetical protein SARI_02508 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161364758|gb|ABX68526.1| hypothetical protein SPAB_03165 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403666|gb|ACF63888.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194407534|gb|ACF67753.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194457155|gb|EDX45994.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194711337|gb|ACF90558.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195631893|gb|EDX50413.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094824|emb|CAR60357.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197213519|gb|ACH50916.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197244164|gb|EDY26784.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197289580|gb|EDY28943.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197937546|gb|ACH74879.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199602666|gb|EDZ01212.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204323398|gb|EDZ08593.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205271510|emb|CAR36328.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323516|gb|EDZ11355.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329474|gb|EDZ16238.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205333370|gb|EDZ20134.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205340408|gb|EDZ27172.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343985|gb|EDZ30749.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349770|gb|EDZ36401.1| transcription termination/antitermination factor NusB [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206707702|emb|CAR31986.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224466783|gb|ACN44613.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|226905931|gb|EEH91849.1| transcription antitermination protein NusB [Citrobacter sp. 30_2]
gi|261245701|emb|CBG23497.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992129|gb|ACY87014.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|291069789|gb|EFE07898.1| transcription antitermination factor NusB [Citrobacter youngae ATCC
29220]
gi|301157029|emb|CBW16512.1| N utilization substance protein B [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911451|dbj|BAJ35425.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320084694|emb|CBY94485.1| N utilization substance protein B homolog Protein nusB [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321225145|gb|EFX50206.1| Transcription termination protein NusB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614698|gb|EFY11627.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618804|gb|EFY15692.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322623511|gb|EFY20350.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629191|gb|EFY25970.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631911|gb|EFY28665.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637352|gb|EFY34054.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642037|gb|EFY38647.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647856|gb|EFY44331.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322652534|gb|EFY48888.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653304|gb|EFY49637.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660547|gb|EFY56783.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664699|gb|EFY60892.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669248|gb|EFY65398.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670793|gb|EFY66926.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678968|gb|EFY75023.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681996|gb|EFY78021.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322685175|gb|EFY81172.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322713490|gb|EFZ05061.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323128737|gb|ADX16167.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194477|gb|EFZ79672.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323196986|gb|EFZ82128.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203971|gb|EFZ88988.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323206944|gb|EFZ91897.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210838|gb|EFZ95710.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214529|gb|EFZ99280.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323223086|gb|EGA07429.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323227035|gb|EGA11216.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230147|gb|EGA14267.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233885|gb|EGA17974.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238421|gb|EGA22479.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244109|gb|EGA28118.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246269|gb|EGA30252.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251895|gb|EGA35758.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323257892|gb|EGA41571.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261095|gb|EGA44687.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264975|gb|EGA48474.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323272538|gb|EGA55945.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326622120|gb|EGE28465.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326626764|gb|EGE33107.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332987366|gb|AEF06349.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 139
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPVIRPNK 138
>gi|254391339|ref|ZP_05006543.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|294811554|ref|ZP_06770197.1| Transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|326440061|ref|ZP_08214795.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|197705030|gb|EDY50842.1| transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
gi|294324153|gb|EFG05796.1| Transcription antitermination protein NusB [Streptomyces
clavuligerus ATCC 27064]
Length = 142
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D S +++++ + + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRDVSVQTVLADWIRHSRTDTRQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI + E W R+ ++ +ILR G EL+ P V+I E V
Sbjct: 53 VEGYAQYAPRIDELI-ATYAEGWDLDRMPVVDRNILRLGTYELVWVDGTPDAVVIDEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L +
Sbjct: 112 LAKEFSTDESPAFVNGLLGRF 132
>gi|118617385|ref|YP_905717.1| transcription antitermination protein NusB [Mycobacterium ulcerans
Agy99]
gi|118569495|gb|ABL04246.1| N utilization substance protein NusB [Mycobacterium ulcerans Agy99]
Length = 173
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ K R AR AV +++ + G EI TEL +
Sbjct: 5 RPGKPVKGRHQARKRAVDLMFEAEARGLGPGEIADLR--------TELAETKPDVAPLHP 56
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + G+ + HID LI+S L + W+ RL + +ILR V EL+ VP V +
Sbjct: 57 YTAAVARGIGEHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141
>gi|256827876|ref|YP_003156604.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
gi|256577052|gb|ACU88188.1| NusB antitermination factor [Desulfomicrobium baculatum DSM 4028]
Length = 154
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
++H R R A Q +Y + S +I ++ + + E D +
Sbjct: 1 MTHNRRHQRRFAFQVIYSLVFGQKMSKDSLIKSFDNF------WTEEEFDMERQD-SYAW 53
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV D ID +I+ ++ W +R+ + +ILR + E++ C +P++V ++E
Sbjct: 54 TLVEGVFDNYDSIDEIITQH-SQHWKLNRIAKVELTILRLSLFEMLFCPDIPIKVAMNEA 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A DF + F+N VLD ++ +
Sbjct: 113 IELAKDFGDDNSKTFVNGVLDAAAKGAQRNE 143
>gi|149177355|ref|ZP_01855960.1| transcription antitermination protein NusB [Planctomyces maris DSM
8797]
gi|148843880|gb|EDL58238.1| transcription antitermination protein NusB [Planctomyces maris DSM
8797]
Length = 171
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR VQ LYQID+ S EI E + + +
Sbjct: 4 RKQARFLVVQMLYQIDLNPDISINEIREMIEEH------------GRNKTARTFAWELFT 51
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM+ KQ +D I E W+ R+ + +ILR G EL+ P V+I E V +A
Sbjct: 52 GVMEFKQQLDEHIVRV-AENWTLKRMAVTDRNILRLGTYELLHTD-TPPAVVIDEAVELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+F +F+N +LDKV ++++
Sbjct: 110 REFGSAHSSQFVNGILDKVVQRKD 133
>gi|238026450|ref|YP_002910681.1| transcription antitermination protein NusB [Burkholderia glumae
BGR1]
gi|237875644|gb|ACR27977.1| NusB antitermination factor [Burkholderia glumae BGR1]
Length = 145
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 13/153 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A Q LYQ + ST EI D +L Y D E
Sbjct: 2 KKSARRQSRELATQGLYQWLLSNASTGEI-----------DAQLRGAQGYDKADRELLET 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ + +++ CL +L + ++L EL P V+I+E V
Sbjct: 51 ILYGVIREHADLAAVLTPCLDR--PLEQLSPVERAVLLIATFELKHQIETPYRVVINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ F D K++N V DK++ K +
Sbjct: 109 ELTKTFGGSDGYKYVNGVADKLALKLRPDEAAA 141
>gi|300767235|ref|ZP_07077147.1| transcription antitermination factor NusB [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495054|gb|EFK30210.1| transcription antitermination factor NusB [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 139
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 9/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A QAL+ ++ + + + AD +
Sbjct: 1 MSLTRHEIREKAFQALFALNANPDADENQLFQQLLNPEEADAVEIP---------AYLST 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + +D I L++KWS +RL ILR EL VP +V ++E +
Sbjct: 52 LVTGVREHQAELDAQIQPYLSQKWSLNRLAKTDLIILRIAFFELQFVDDVPAKVAVNEAI 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ F KF++ VL KV + +
Sbjct: 112 ELTKAFSDDRSRKFVSGVLGKVVKNQ 137
>gi|300312879|ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator
protein [Herbaspirillum seropedicae SmR1]
gi|300075664|gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator
protein [Herbaspirillum seropedicae SmR1]
Length = 156
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 14/162 (8%)
Query: 1 MTIQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ + + + R AR A+Q LYQ + I + +
Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAH-----------IREAH 49
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D E F ++ G + + + ++ + L + + L G EL
Sbjct: 50 GFDKADAEHFDTLLTGAIRDAEKLRAGLAPLIDR--PIKELSPVEHAALLIGAYELQNHI 107
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P +V+I+E V + F D K++N VLD+ + +
Sbjct: 108 EIPYKVVINEAVELTKSFGGIDGHKYVNGVLDRFAAQTRATE 149
>gi|111024096|ref|YP_707068.1| transcription antitermination protein NusB [Rhodococcus jostii
RHA1]
gi|119390812|sp|Q0S0M6|NUSB_RHOSR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110823626|gb|ABG98910.1| N utilization substance protein B [Rhodococcus jostii RHA1]
Length = 169
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + ++ +E EL + + +
Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + +D +I S L + W+ RL + +ILR V EL VP V + E
Sbjct: 58 TVVTGVAENLDRLDEVIRSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A + P F+N +L +V
Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140
>gi|262042439|ref|ZP_06015599.1| transcription termination/antitermination factor NusB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|259040214|gb|EEW41325.1| transcription termination/antitermination factor NusB [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
Length = 139
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E +VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSHNDIADVEYQFLA-----------EQDVKYVDVLYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|194364362|ref|YP_002026972.1| transcription antitermination protein NusB [Stenotrophomonas
maltophilia R551-3]
gi|238693436|sp|B4SJC1|NUSB_STRM5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|194347166|gb|ACF50289.1| NusB antitermination factor [Stenotrophomonas maltophilia R551-3]
Length = 159
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 45/171 (26%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 1 MTIQDNKKDL-KLSHR-------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD 52
M K K R R AR AVQA+Y I G + +I+++
Sbjct: 1 MNKNTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQF-------- 52
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
E DL +F ++HGV+D ++ ID + L +D I ++LR
Sbjct: 53 ---AHEQAREIADLAYFEALMHGVLDNRRDIDEALGPYLDRG--IEEVDAIERAVLRLAG 107
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
EL VP V+I+E + A F ++N VLD+ + + SG
Sbjct: 108 YELRYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVELRKVESG 158
>gi|238752770|ref|ZP_04614239.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
gi|238709028|gb|EEQ01277.1| N utilization substance protein B [Yersinia rohdei ATCC 43380]
Length = 138
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDISYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK++ K+
Sbjct: 118 DSHKFVNGVLDKLAPTIRKKK 138
>gi|226949184|ref|YP_002804275.1| N utilization substance protein B [Clostridium botulinum A2 str.
Kyoto]
gi|254772625|sp|C1FPB3|NUSB_CLOBJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226844538|gb|ACO87204.1| N utilization substance protein B [Clostridium botulinum A2 str.
Kyoto]
Length = 143
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD---TELDVESVYLHVDLEWFRV 71
R +R A++ L+Q + G + E + + R + + VD+++ +
Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
II G+ + K+ ID I L W RL + SILR EL +P V I+E +
Sbjct: 62 IIKGIEENKEEIDEKIKGNLKN-WKIERLSKVDLSILRLCTYELKFEEDIPNRVSINEAI 120
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A + FIN VL K+
Sbjct: 121 ELAKKYSGEKSATFINGVLGKMI 143
>gi|226366336|ref|YP_002784119.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
gi|254772652|sp|C1B4I5|NUSB_RHOOB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226244826|dbj|BAH55174.1| transcription antitermination protein NusB [Rhodococcus opacus B4]
Length = 169
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 9/144 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + ++ +E EL + + +
Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVDLATER--------AELSGKDDSVAPVAPYTV 57
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + +D +ISS L + W+ RL + +ILR V EL VP V + E
Sbjct: 58 TVVTGVAENLDRLDEVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A + P F+N +L +V
Sbjct: 117 VELAKQLSTDESPGFVNGILGQVV 140
>gi|312880056|ref|ZP_07739856.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
gi|310783347|gb|EFQ23745.1| NusB antitermination factor [Aminomonas paucivorans DSM 12260]
Length = 156
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 15/157 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ +R +R A+Q Y++D+ S ++++ + ++
Sbjct: 6 MPQKRRRSREIALQLGYEMDVRERLSVEDVLAAF------------PLEEEDPEIRDYAC 53
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ + K ID L+ L W R+ + + +R +LE + VP+ V ISE
Sbjct: 54 ALVSALDRHKGAIDELLREQLVG-WRPERMVAVDRAAIRLALLEGVFEKLVPLAVAISEA 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V +A F D +F+N VL ++ R E ++G +
Sbjct: 113 VELAKTFGTEDSGRFVNGVLGRIVRSLEP-KAGSDAP 148
>gi|226306485|ref|YP_002766445.1| transcription antitermination protein NusB [Rhodococcus
erythropolis PR4]
gi|259514883|sp|C0ZZC1|NUSB_RHOE4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226185602|dbj|BAH33706.1| transcription antitermination protein NusB [Rhodococcus
erythropolis PR4]
Length = 165
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR AV L++ + + ++L V+ + +
Sbjct: 6 KKLGARHKARKRAVDFLFEAEARDLDPVALA--------SERSDLSVKDDAVAPVAAYTV 57
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + ID +ISS L + W+ RL + +ILR V EL VP V + E
Sbjct: 58 TLVSGVAENLDRIDQVISSHL-QDWTLERLPAVDRAILRIAVWELFHATDVPPVVAVDEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A D P F+N +L +V
Sbjct: 117 VELAKQLSTDDSPGFVNGILGQVV 140
>gi|297623354|ref|YP_003704788.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
gi|297164534|gb|ADI14245.1| NusB antitermination factor [Truepera radiovictrix DSM 17093]
Length = 165
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 4/155 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---SVYLHVDLEWFRVI 72
R AR A +AL+Q + G E+ + E L + +
Sbjct: 3 RRRARELAFRALFQSERGGEPLLEVWEGIRDDVTEQPPDEAEEAYGDPLEEEGLAFAERL 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ +D +S L E W+F+++ ++LR + E++ VP EV I V
Sbjct: 63 LRAFHTHREEVDARLSEAL-EGWTFAQMAQTDLAVLRLALTEILFEPEVPKEVTIEVAVR 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
IA + + +F+N VL ++ R+ G A
Sbjct: 122 IAKRYGGEESGRFVNGVLGRLYREVRGDAPGGEGA 156
>gi|308371048|ref|ZP_07667079.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu003]
gi|308373441|ref|ZP_07667582.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu005]
gi|308377044|ref|ZP_07668414.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu008]
gi|308378420|ref|ZP_07668745.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu009]
gi|308405376|ref|ZP_07669465.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu012]
gi|308330008|gb|EFP18859.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu003]
gi|308337652|gb|EFP26503.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu005]
gi|308349124|gb|EFP37975.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu008]
gi|308352601|gb|EFP41452.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu009]
gi|308365233|gb|EFP54084.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu012]
Length = 249
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ ++ G S E++ +
Sbjct: 2 SDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP-------- 53
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++
Sbjct: 54 YTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVV 112
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 113 DEAVQLAKELSTDDSPGFVNGVLGQV 138
>gi|238650352|ref|YP_002916204.1| transcription antitermination protein NusB [Rickettsia peacockii
str. Rustic]
gi|259514892|sp|C4K0Q5|NUSB_RICPU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238624450|gb|ACR47156.1| transcription antitermination protein NusB [Rickettsia peacockii
str. Rustic]
Length = 156
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|238021694|ref|ZP_04602120.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
gi|237866308|gb|EEP67350.1| hypothetical protein GCWU000324_01597 [Kingella oralis ATCC 51147]
Length = 145
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AVQALYQ+ + E+ + + Y H D E F I
Sbjct: 3 VSPRRRAREFAVQALYQVALNKIPAPEVAQH-----------IRESNDYRHADGELFTAI 51
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G + ++ +I L + ++ I S+L V EL P VII+E +
Sbjct: 52 FFGAHNNQREYMQIIRPLLDRDENL--INPIERSVLLVAVHELKAMPETPYPVIINEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KFIN +LDK+ +
Sbjct: 110 VTKTFGGTDSHKFINGILDKLVAQLRPNDP 139
>gi|256379255|ref|YP_003102915.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
gi|255923558|gb|ACU39069.1| NusB antitermination factor [Actinosynnema mirum DSM 43827]
Length = 139
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV +Y+ D G ++S+ V S + E+ +
Sbjct: 1 MGARTKARKRAVDVIYEADQRGVDAVTLLSDR------------VGSTDVPPINEYTVSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID LIS +E W+ R+ + ++LR G+ EL+ VP V I E V
Sbjct: 49 VEGVTAHRARIDDLISEH-SEGWTLQRMPAVDRAVLRVGLYELLWAADVPDAVAIDEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P+F+N VL +++
Sbjct: 108 LAKGLSTDDSPRFVNGVLGRIA 129
>gi|193214274|ref|YP_001995473.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
gi|238692701|sp|B3QV72|NUSB_CHLT3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|193087751|gb|ACF13026.1| NusB antitermination factor [Chloroherpeton thalassium ATCC 35110]
Length = 211
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A+Q LY ++ ++ AD + ++
Sbjct: 1 MIISRRQIRELAMQVLYAYEVRKEKVDKVAKGIIPEDVVADIKA----------KDFIFK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
II+ V+ Q ID I+ + W +R+ +I +++R + E++ VP +V I+E +
Sbjct: 51 IINSVIQNIQDIDTHIAKH-ADNWELNRMAIIDKNLMRIAIAEMLYLDDVPPKVSINEAI 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
IA + KF+N +LD + + K
Sbjct: 110 EIAKRYSTDKSSKFVNGILDATYNEVKSK 138
>gi|37527753|ref|NP_931098.1| transcription antitermination protein NusB [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|39931724|sp|Q7N0J0|NUSB_PHOLL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|36787189|emb|CAE16269.1| N utilization substance protein B [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 138
Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G S ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSGNSIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 AKLDALMAPYLSRQ--LEELGQVEKAILRIAMFELSYRDDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|261380112|ref|ZP_05984685.1| transcription antitermination factor NusB [Neisseria subflava
NJ9703]
gi|284797333|gb|EFC52680.1| transcription antitermination factor NusB [Neisseria subflava
NJ9703]
Length = 142
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQA+YQ I + EI S ++D E F
Sbjct: 1 MKSPRRRARELAVQAIYQAGINKTAAPEIAKNIREL-----------SQAPNMDEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + IS L L I ++L EL P VII+E +
Sbjct: 50 LFFGAQTHAEEYMEKISPLLDRDE--KDLSPIERAVLLVACHELSTMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LD+++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDQLASRIRPDEP 138
>gi|238783631|ref|ZP_04627652.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
gi|238715509|gb|EEQ07500.1| N utilization substance protein B [Yersinia bercovieri ATCC 43970]
Length = 138
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK++ K+
Sbjct: 118 DSHKFVNGVLDKLAPTVRKKK 138
>gi|307326792|ref|ZP_07605984.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
gi|306887555|gb|EFN18549.1| NusB antitermination factor [Streptomyces violaceusniger Tu 4113]
Length = 150
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G + +++++ D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGATVQIVLADWIRLARTDDRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI + W+ R+ ++ +ILR G EL+ P V+I E V
Sbjct: 53 VEGYAQHIDRIDELI-ATYAVGWTLDRMPVVDRNILRLGAYELVWEDETPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L ++
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRI 132
>gi|256832560|ref|YP_003161287.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
gi|256686091|gb|ACV08984.1| NusB antitermination factor [Jonesia denitrificans DSM 20603]
Length = 138
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV LY+ D S +++ + ++ +
Sbjct: 1 MAARSKARKRAVNILYEADQRNLSAAQVLDIRLA-----------DPGVPSALPQYAVDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ ++ ID I + W R+ + +ILR G EL+ VP V I E V
Sbjct: 50 VEGVILHRERIDE-ILETYSRGWPLRRMPAVDRAILRLGTWELLYNDDVPDIVAIDEAVD 108
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + D P F+N +L +V
Sbjct: 109 LARELSTEDSPSFVNGLLGRV 129
>gi|148379847|ref|YP_001254388.1| N utilization substance protein B [Clostridium botulinum A str.
ATCC 3502]
gi|153933180|ref|YP_001384144.1| transcription antitermination protein NusB [Clostridium botulinum A
str. ATCC 19397]
gi|153934479|ref|YP_001387685.1| transcription antitermination protein NusB [Clostridium botulinum A
str. Hall]
gi|153938662|ref|YP_001391208.1| transcription antitermination protein NusB [Clostridium botulinum F
str. Langeland]
gi|168180474|ref|ZP_02615138.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
gi|168184572|ref|ZP_02619236.1| N utilization substance protein B [Clostridium botulinum Bf]
gi|170757090|ref|YP_001781437.1| transcription antitermination protein NusB [Clostridium botulinum
B1 str. Okra]
gi|237795301|ref|YP_002862853.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
657]
gi|166215682|sp|A7FUU1|NUSB_CLOB1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215683|sp|A5I310|NUSB_CLOBH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215684|sp|A7GEJ8|NUSB_CLOBL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229620057|sp|B1IMN9|NUSB_CLOBK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|259514805|sp|C3KXC7|NUSB_CLOB6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|148289331|emb|CAL83427.1| N utilization substance protein b [Clostridium botulinum A str.
ATCC 3502]
gi|152929224|gb|ABS34724.1| N utilization substance protein B [Clostridium botulinum A str.
ATCC 19397]
gi|152930393|gb|ABS35892.1| N utilization substance protein B [Clostridium botulinum A str.
Hall]
gi|152934558|gb|ABS40056.1| N utilization substance protein B [Clostridium botulinum F str.
Langeland]
gi|169122302|gb|ACA46138.1| N utilization substance protein B [Clostridium botulinum B1 str.
Okra]
gi|182668651|gb|EDT80629.1| N utilization substance protein B [Clostridium botulinum NCTC 2916]
gi|182672364|gb|EDT84325.1| N utilization substance protein B [Clostridium botulinum Bf]
gi|229261715|gb|ACQ52748.1| N utilization substance protein B [Clostridium botulinum Ba4 str.
657]
gi|295319244|gb|ADF99621.1| N utilization substance protein B [Clostridium botulinum F str.
230613]
gi|322806136|emb|CBZ03704.1| transcription termination protein NusB [Clostridium botulinum
H04402 065]
Length = 143
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD---TELDVESVYLHVDLEWFRV 71
R +R A++ L+Q + G + E + + R + + VD+++ +
Sbjct: 2 NRRKSREVAMRLLFQTTLNGENLEEALENLKDVRESEEITKEKDYESVDLKDVDIDYVKR 61
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
II G+ + K+ ID I L W RL + SILR EL +P V ++E +
Sbjct: 62 IIKGIEENKEEIDEKIKGNLKN-WKIERLSKVDLSILRLCTYELKFEEDIPNRVSVNEAI 120
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A + FIN VL K+
Sbjct: 121 ELAKKYSGEKSATFINGVLGKMI 143
>gi|71892016|ref|YP_277746.1| transcription antitermination protein NusB [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|119372278|sp|Q493G9|NUSB_BLOPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71796122|gb|AAZ40873.1| L factor [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 144
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR +QALY + EI T E ++ +F +
Sbjct: 5 SRRRARECTLQALYSWQVSKNDVKEIERYVVT-----------EQDIQDCNISYFHELYI 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ + +D L+ L+ + +L I S+LR + EL +C+ +P +V I+E + +
Sbjct: 54 GVISCAEELDKLMIPHLSR--NLEKLGYIEHSVLRIALFELTKCNDIPYKVAINEAIELV 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F KFIN VLDK++ +
Sbjct: 112 KIFGAEKSHKFINGVLDKIANQL 134
>gi|15842067|ref|NP_337104.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis CDC1551]
gi|13882348|gb|AAK46918.1| N utilization substance protein B [Mycobacterium tuberculosis
CDC1551]
Length = 290
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ ++ G S E++ +
Sbjct: 2 SDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP-------- 53
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++
Sbjct: 54 YTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVV 112
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 113 DEAVQLAKELSTDDSPGFVNGVLGQV 138
>gi|330824837|ref|YP_004388140.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
gi|329310209|gb|AEB84624.1| NusB antitermination factor [Alicycliphilus denitrificans K601]
Length = 181
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+QALYQ + G T I D S + D
Sbjct: 30 RKAGSKSGRSRAREFALQALYQHLVGGNDATAI-----------DLFTRDLSGFHKADAA 78
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ QH+D LI+ L + + I +++ GV E C VP V+I
Sbjct: 79 HYDALLHGCIETAQHMDALIAPLLDR--KMAEISPIEHAVMWIGVYEFQHCPDVPWRVVI 136
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+E + +A +F D K++N +L+ ++ +
Sbjct: 137 NECIELAKEFGGTDGHKYVNGILNGLAPQLR 167
>gi|148264233|ref|YP_001230939.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
gi|189035890|sp|A5G3J8|NUSB_GEOUR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|146397733|gb|ABQ26366.1| NusB antitermination factor [Geobacter uraniireducens Rf4]
Length = 145
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALY D+ T ++ + +
Sbjct: 1 MSSRREGRELALQALYSSDVEVMDGTTVLKRIMENFGDGSEPAVDAHSRS---FSFAAEL 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ + ID I ++ WS SR+ + +ILR V EL +P V I+E +
Sbjct: 58 VNGVVANRAAIDQRIEEK-SKNWSISRMARVDLNILRLAVFELFYRPDIPKNVTINEAIE 116
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D P FIN +LD+++
Sbjct: 117 VAKKFGADDSPAFINGILDEIA 138
>gi|15892127|ref|NP_359841.1| transcription antitermination protein NusB [Rickettsia conorii str.
Malish 7]
gi|20139047|sp|Q92J65|NUSB_RICCN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|15619255|gb|AAL02742.1| N utilization substance protein B [Rickettsia conorii str. Malish
7]
Length = 156
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNAITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|296333411|ref|ZP_06875864.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675083|ref|YP_003866755.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296149609|gb|EFG90505.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413327|gb|ADM38446.1| transcription antitermination protein NusB [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 131
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ + E I +F ++H
Sbjct: 2 KRRTAREKALQALFQIDVSDIAVNEAIEHALDE---------------EKTDPFFEQLVH 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + +D +IS L W R+ + +ILR E+ +PV V ++E + +A
Sbjct: 47 GVLEHQVQLDEMISKHLVN-WKLDRIANVDRAILRLAAYEMAYAEDIPVNVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F KF+N VL + E
Sbjct: 106 KRFGDDKATKFVNGVLSNIKSDIE 129
>gi|270263549|ref|ZP_06191818.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
gi|270042433|gb|EFA15528.1| putative N-utilization protein B [Serratia odorifera 4Rx13]
Length = 140
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ T E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLT-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL VP +V I+E + +A F
Sbjct: 60 GLLDGLMAPFLSRQ--LEELGQVERAVLRIALFELKMREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + K
Sbjct: 118 DSHKFVNGVLDKAAPSIRKKN 138
>gi|116333616|ref|YP_795143.1| transcription antitermination protein NusB [Lactobacillus brevis
ATCC 367]
gi|122269697|sp|Q03RR0|NUSB_LACBA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116098963|gb|ABJ64112.1| NusB antitermination factor [Lactobacillus brevis ATCC 367]
Length = 142
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A Q L+ ++ + + + + L + L ++
Sbjct: 1 MTLTRHQIRERAFQMLFALNANPEADHDALYQRV---------LTDDPNQLVPVPDYLAT 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + +D I L+ W R+ ILR E+ VP V ++E +
Sbjct: 52 LVNGVLAHQSELDAQIDQYLSTGWQLKRIAKTDLVILRMAFYEIEHVDDVPNRVAVNEAL 111
Query: 132 CIAHDFFYGDEPKFINAVL 150
+A +F +FIN VL
Sbjct: 112 ELAKNFSDDRSRRFINGVL 130
>gi|78485740|ref|YP_391665.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
gi|119390843|sp|Q31FT2|NUSB_THICR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78364026|gb|ABB41991.1| NusB antitermination factor [Thiomicrospira crunogena XCL-2]
Length = 161
Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 13/151 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R R A+QALYQ + T +II ++ E + D+ F+
Sbjct: 19 KSVSVRTQTRRVALQALYQWQVNHSETVDIIKQF-----------SEEGRLVDTDVALFQ 67
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++ V + +D L + L +R+D + +I+R GV EL +P V+I+E
Sbjct: 68 EIVNEVANHAADLDELYAPFLDRA--VARIDPVEKNIMRMGVFELQNKLEIPYRVVINES 125
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V +A F D K+IN +LDK +
Sbjct: 126 VELAKRFGAEDSHKYINGILDKAAEGLRSLE 156
>gi|326317709|ref|YP_004235381.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323374545|gb|ADX46814.1| NusB antitermination factor [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 186
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 13/163 (7%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T + R +R A+QALYQ + T I D S +
Sbjct: 25 TTSTGARKAASKSARSRSRAFALQALYQHIVGRNEATAI-----------DVFTRDLSGF 73
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++HG ++ + +D LI+ + + I + + GV E C V
Sbjct: 74 HKADAAHYDALLHGCIENAETLDALITP--KLDRTLEEISPIEHATMWIGVYEFQHCLDV 131
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
P V+I+E V +A +F D K++N VL+ ++
Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLAPTLRAAEVAA 174
>gi|46579608|ref|YP_010416.1| N utilization substance protein B [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602904|ref|YP_967304.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
gi|81566935|sp|Q72CT6|NUSB_DESVH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215687|sp|A1VEL1|NUSB_DESVV RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|46449023|gb|AAS95675.1| N utilization substance protein B [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563133|gb|ABM28877.1| NusB antitermination factor [Desulfovibrio vulgaris DP4]
gi|311233412|gb|ADP86266.1| NusB antitermination factor [Desulfovibrio vulgaris RCH1]
Length = 153
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 6/151 (3%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K + R AR A Q LY + + E Y D S
Sbjct: 1 MTTKGTPSRRAARALAFQILYGLGFS--PAASVKQLREAYASSPDVADKGRSPQPE---G 55
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ +I G+ + +ID +I ++ W R+ + ++LR V E++ VP +V I
Sbjct: 56 FAWELIEGIWTEQANIDEVIG-LFSQNWRIDRIGRVELTLLRIAVYEMLYRIDVPPKVAI 114
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+E + ++ F + FIN +LD ++ E
Sbjct: 115 NEALELSKQFGDANARGFINGILDAAAKALE 145
>gi|266618676|pdb|3IMQ|A Chain A, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
gi|266618678|pdb|3IMQ|B Chain B, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
gi|266618680|pdb|3IMQ|C Chain C, Crystal Structure Of The Nusb101-S10(Delta Loop) Complex
Length = 141
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 13 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 61
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 62 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 119
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
+ KF+N VLDK + +
Sbjct: 120 NSHKFVNGVLDKAAPVIRPNK 140
>gi|157964229|ref|YP_001499053.1| transcription antitermination protein NusB [Rickettsia massiliae
MTU5]
gi|166918810|sp|A8F0S0|NUSB_RICM5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157844005|gb|ABV84506.1| N utilization substance protein B [Rickettsia massiliae MTU5]
Length = 156
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|34580842|ref|ZP_00142322.1| N utilization substance protein B [Rickettsia sibirica 246]
gi|229586404|ref|YP_002844905.1| transcription antitermination protein NusB [Rickettsia africae
ESF-5]
gi|259514889|sp|C3PMK2|NUSB_RICAE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28262227|gb|EAA25731.1| N utilization substance protein B [Rickettsia sibirica 246]
gi|228021454|gb|ACP53162.1| N utilization substance protein B [Rickettsia africae ESF-5]
Length = 156
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|332670495|ref|YP_004453503.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
gi|332339533|gb|AEE46116.1| NusB antitermination factor [Cellulomonas fimi ATCC 484]
Length = 138
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D G ++++ E ++ +
Sbjct: 1 MGARTKARKRALDVLFEADQRGLDPVTLLAQRVA-----------EPGTEAALPQYSVDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ R++ ID L+ + W+ R+ + ++LR G E++ VP V + E V
Sbjct: 50 VEGVIARRERIDELL-ATHAHGWTIERMPAVDRALLRLGTWEILFNDDVPDAVAVDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + P F+N +L ++
Sbjct: 109 LARSLSTDESPSFVNGLLGRIV 130
>gi|15800145|ref|NP_286157.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 EDL933]
gi|15829723|ref|NP_308496.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. Sakai]
gi|16128401|ref|NP_414950.1| transcription antitermination protein [Escherichia coli str. K-12
substr. MG1655]
gi|24111794|ref|NP_706304.1| transcription antitermination protein NusB [Shigella flexneri 2a
str. 301]
gi|26246422|ref|NP_752461.1| transcription antitermination protein NusB [Escherichia coli
CFT073]
gi|30061911|ref|NP_836082.1| transcription antitermination protein NusB [Shigella flexneri 2a
str. 2457T]
gi|74310985|ref|YP_309404.1| transcription antitermination protein NusB [Shigella sonnei Ss046]
gi|82542904|ref|YP_406851.1| transcription antitermination protein NusB [Shigella boydii Sb227]
gi|82775679|ref|YP_402026.1| transcription antitermination protein NusB [Shigella dysenteriae
Sd197]
gi|89107286|ref|AP_001066.1| transcription antitermination protein [Escherichia coli str. K-12
substr. W3110]
gi|91209485|ref|YP_539471.1| transcription antitermination protein NusB [Escherichia coli UTI89]
gi|110640677|ref|YP_668405.1| transcription antitermination protein NusB [Escherichia coli 536]
gi|110804438|ref|YP_687958.1| transcription antitermination protein NusB [Shigella flexneri 5
str. 8401]
gi|157154883|ref|YP_001461598.1| transcription antitermination protein NusB [Escherichia coli
E24377A]
gi|157159937|ref|YP_001457255.1| transcription antitermination protein NusB [Escherichia coli HS]
gi|170021212|ref|YP_001726166.1| transcription antitermination protein NusB [Escherichia coli ATCC
8739]
gi|170080002|ref|YP_001729322.1| transcription antitermination protein [Escherichia coli str. K-12
substr. DH10B]
gi|170681155|ref|YP_001742553.1| transcription antitermination protein NusB [Escherichia coli
SMS-3-5]
gi|170767720|ref|ZP_02902173.1| transcription termination/antitermination factor NusB [Escherichia
albertii TW07627]
gi|187730987|ref|YP_001879125.1| transcription antitermination protein NusB [Shigella boydii CDC
3083-94]
gi|187776230|ref|ZP_02801288.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4196]
gi|188024918|ref|ZP_02774897.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4113]
gi|188493154|ref|ZP_03000424.1| transcription termination/antitermination factor NusB [Escherichia
coli 53638]
gi|189010625|ref|ZP_02808286.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4076]
gi|189402368|ref|ZP_02781962.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4401]
gi|189403130|ref|ZP_02793371.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4486]
gi|189404015|ref|ZP_02786626.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4501]
gi|189404842|ref|ZP_02811267.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC869]
gi|189405926|ref|ZP_02825303.2| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC508]
gi|191166701|ref|ZP_03028528.1| transcription termination/antitermination factor NusB [Escherichia
coli B7A]
gi|191173527|ref|ZP_03035054.1| transcription termination/antitermination factor NusB [Escherichia
coli F11]
gi|193065231|ref|ZP_03046304.1| transcription termination/antitermination factor NusB [Escherichia
coli E22]
gi|193068719|ref|ZP_03049680.1| transcription termination/antitermination factor NusB [Escherichia
coli E110019]
gi|194428830|ref|ZP_03061365.1| transcription termination/antitermination factor NusB [Escherichia
coli B171]
gi|194432551|ref|ZP_03064837.1| transcription termination/antitermination factor NusB [Shigella
dysenteriae 1012]
gi|194438929|ref|ZP_03071014.1| transcription termination/antitermination factor NusB [Escherichia
coli 101-1]
gi|195938519|ref|ZP_03083901.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. EC4024]
gi|208809341|ref|ZP_03251678.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4206]
gi|208815911|ref|ZP_03257090.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4045]
gi|208822969|ref|ZP_03263287.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4042]
gi|209396859|ref|YP_002269060.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4115]
gi|209917629|ref|YP_002291713.1| transcription antitermination protein NusB [Escherichia coli SE11]
gi|215485497|ref|YP_002327928.1| transcription antitermination protein NusB [Escherichia coli
O127:H6 str. E2348/69]
gi|217325689|ref|ZP_03441773.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. TW14588]
gi|218552979|ref|YP_002385892.1| transcription antitermination protein NusB [Escherichia coli IAI1]
gi|218557325|ref|YP_002390238.1| transcription antitermination protein NusB [Escherichia coli S88]
gi|218688279|ref|YP_002396491.1| transcription antitermination protein NusB [Escherichia coli ED1a]
gi|218693876|ref|YP_002401543.1| transcription antitermination protein NusB [Escherichia coli 55989]
gi|218698675|ref|YP_002406304.1| transcription antitermination protein NusB [Escherichia coli IAI39]
gi|218703698|ref|YP_002411217.1| transcription antitermination protein NusB [Escherichia coli
UMN026]
gi|227884576|ref|ZP_04002381.1| N utilization substance B [Escherichia coli 83972]
gi|237707590|ref|ZP_04538071.1| transcription termination [Escherichia sp. 3_2_53FAA]
gi|238899704|ref|YP_002925500.1| transcription antitermination protein [Escherichia coli BW2952]
gi|253774599|ref|YP_003037430.1| transcription antitermination protein NusB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160482|ref|YP_003043590.1| transcription antitermination protein NusB [Escherichia coli B str.
REL606]
gi|254791599|ref|YP_003076436.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. TW14359]
gi|256020383|ref|ZP_05434248.1| transcription antitermination protein NusB [Shigella sp. D9]
gi|256023967|ref|ZP_05437832.1| transcription antitermination protein NusB [Escherichia sp.
4_1_40B]
gi|260842614|ref|YP_003220392.1| transcription antitermination protein NusB [Escherichia coli
O103:H2 str. 12009]
gi|260853636|ref|YP_003227527.1| transcription antitermination protein NusB [Escherichia coli
O26:H11 str. 11368]
gi|260866574|ref|YP_003232976.1| transcription antitermination protein NusB [Escherichia coli
O111:H- str. 11128]
gi|261223895|ref|ZP_05938176.1| transcription antitermination protein [Escherichia coli O157:H7
str. FRIK2000]
gi|261256391|ref|ZP_05948924.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. FRIK966]
gi|291281322|ref|YP_003498140.1| N utilization substance protein B-like protein [Escherichia coli
O55:H7 str. CB9615]
gi|293403535|ref|ZP_06647626.1| N utilization substance protein B [Escherichia coli FVEC1412]
gi|293408562|ref|ZP_06652401.1| transcription antitermination factor NusB [Escherichia coli B354]
gi|293413670|ref|ZP_06656319.1| transcription antitermination factor NusB [Escherichia coli B185]
gi|293418483|ref|ZP_06660918.1| transcription antitermination factor NusB [Escherichia coli B088]
gi|297517701|ref|ZP_06936087.1| transcription antitermination protein NusB [Escherichia coli OP50]
gi|298379147|ref|ZP_06989028.1| N utilization substance protein B [Escherichia coli FVEC1302]
gi|300818260|ref|ZP_07098471.1| transcription antitermination factor NusB [Escherichia coli MS
107-1]
gi|300820345|ref|ZP_07100497.1| transcription antitermination factor NusB [Escherichia coli MS
119-7]
gi|300900482|ref|ZP_07118649.1| transcription antitermination factor NusB [Escherichia coli MS
198-1]
gi|300903319|ref|ZP_07121247.1| transcription antitermination factor NusB [Escherichia coli MS
84-1]
gi|300918204|ref|ZP_07134811.1| transcription antitermination factor NusB [Escherichia coli MS
115-1]
gi|300924136|ref|ZP_07140128.1| transcription antitermination factor NusB [Escherichia coli MS
182-1]
gi|300930289|ref|ZP_07145702.1| transcription antitermination factor NusB [Escherichia coli MS
187-1]
gi|300937025|ref|ZP_07151891.1| transcription antitermination factor NusB [Escherichia coli MS
21-1]
gi|300947933|ref|ZP_07162081.1| transcription antitermination factor NusB [Escherichia coli MS
116-1]
gi|300957981|ref|ZP_07170146.1| transcription antitermination factor NusB [Escherichia coli MS
175-1]
gi|300988032|ref|ZP_07178512.1| transcription antitermination factor NusB [Escherichia coli MS
45-1]
gi|300997397|ref|ZP_07181737.1| transcription antitermination factor NusB [Escherichia coli MS
200-1]
gi|301022595|ref|ZP_07186467.1| transcription antitermination factor NusB [Escherichia coli MS
69-1]
gi|301025697|ref|ZP_07189213.1| transcription antitermination factor NusB [Escherichia coli MS
196-1]
gi|301049616|ref|ZP_07196567.1| transcription antitermination factor NusB [Escherichia coli MS
185-1]
gi|301301564|ref|ZP_07207699.1| transcription antitermination factor NusB [Escherichia coli MS
124-1]
gi|301647338|ref|ZP_07247150.1| transcription antitermination factor NusB [Escherichia coli MS
146-1]
gi|306813118|ref|ZP_07447311.1| transcription antitermination protein NusB [Escherichia coli NC101]
gi|307137059|ref|ZP_07496415.1| transcription antitermination protein NusB [Escherichia coli H736]
gi|307312209|ref|ZP_07591845.1| NusB antitermination factor [Escherichia coli W]
gi|309787003|ref|ZP_07681615.1| transcription antitermination factor NusB [Shigella dysenteriae
1617]
gi|309794859|ref|ZP_07689280.1| transcription antitermination factor NusB [Escherichia coli MS
145-7]
gi|312964562|ref|ZP_07778818.1| transcription antitermination factor NusB [Escherichia coli
2362-75]
gi|312970511|ref|ZP_07784692.1| transcription antitermination factor NusB [Escherichia coli
1827-70]
gi|331640933|ref|ZP_08342068.1| transcription antitermination factor NusB [Escherichia coli H736]
gi|331645589|ref|ZP_08346693.1| transcription antitermination factor NusB [Escherichia coli M605]
gi|331651350|ref|ZP_08352375.1| transcription antitermination factor NusB [Escherichia coli M718]
gi|331656470|ref|ZP_08357432.1| transcription antitermination factor NusB [Escherichia coli TA206]
gi|331661793|ref|ZP_08362716.1| transcription antitermination factor NusB [Escherichia coli TA143]
gi|331666765|ref|ZP_08367639.1| transcription antitermination factor NusB [Escherichia coli TA271]
gi|331671961|ref|ZP_08372757.1| transcription antitermination factor NusB [Escherichia coli TA280]
gi|331676083|ref|ZP_08376795.1| transcription antitermination factor NusB [Escherichia coli H591]
gi|331681809|ref|ZP_08382442.1| transcription antitermination factor NusB [Escherichia coli H299]
gi|332281562|ref|ZP_08393975.1| transcription termination/antitermination factor NusB [Shigella sp.
D9]
gi|67469828|sp|P0A780|NUSB_ECOLI RecName: Full=N utilization substance protein B; Short=Protein nusB
gi|67469829|sp|P0A781|NUSB_ECOL6 RecName: Full=N utilization substance protein B; Short=Protein nusB
gi|67469832|sp|P0A782|NUSB_ECO57 RecName: Full=N utilization substance protein B; Short=Protein nusB
gi|67469833|sp|P0A783|NUSB_SHIFL RecName: Full=N utilization substance protein B; Short=Protein nusB
gi|119390769|sp|Q0TKM5|NUSB_ECOL5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390770|sp|Q1RFC4|NUSB_ECOUT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390822|sp|Q325I5|NUSB_SHIBS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390823|sp|Q32JH0|NUSB_SHIDS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390824|sp|Q3Z4Z3|NUSB_SHISS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|122957627|sp|Q0T7H3|NUSB_SHIF8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166918806|sp|A7ZIG9|NUSB_ECO24 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166918807|sp|A7ZX68|NUSB_ECOHS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035889|sp|B1J033|NUSB_ECOLC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738899|sp|B7MD74|NUSB_ECO45 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738900|sp|B7NJ81|NUSB_ECO7I RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738901|sp|B7M3Q5|NUSB_ECO8A RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738902|sp|B7N8W8|NUSB_ECOLU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738903|sp|B1LJG6|NUSB_ECOSM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229620059|sp|B1XF04|NUSB_ECODH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238055351|sp|B5Z3S0|NUSB_ECO5E RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238055352|sp|B6HZL7|NUSB_ECOSE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689513|sp|B2U4L9|NUSB_SHIB3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772637|sp|B7UJN9|NUSB_ECO27 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772638|sp|B7L650|NUSB_ECO55 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772639|sp|B7MQD1|NUSB_ECO81 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|259514826|sp|C4ZTH3|NUSB_ECOBW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|9257110|pdb|1EY1|A Chain A, Solution Structure Of Escherichia Coli Nusb
gi|12513271|gb|AAG54765.1|AE005221_2 transcription termination; L factor [Escherichia coli O157:H7 str.
EDL933]
gi|26106820|gb|AAN79005.1|AE016756_188 N utilization substance protein B [Escherichia coli CFT073]
gi|146976|gb|AAA24228.1| nusB [Escherichia coli]
gi|581148|emb|CAA45737.1| nusB (ssyB) [Escherichia coli K-12]
gi|581149|emb|CAA25289.1| unnamed protein product [Escherichia coli]
gi|1773100|gb|AAB40172.1| N utilization substance protein B [Escherichia coli]
gi|1786618|gb|AAC73519.1| transcription antitermination protein [Escherichia coli str. K-12
substr. MG1655]
gi|13359926|dbj|BAB33892.1| transcription termination factor NusB [Escherichia coli O157:H7
str. Sakai]
gi|15027052|emb|CAC44764.1| N utilisation substance protein B [Expression vector
pNCO113-nusB/nusE]
gi|24050582|gb|AAN42011.1| transcription termination factor NusB [Shigella flexneri 2a str.
301]
gi|30040155|gb|AAP15888.1| transcription termination factor NusB [Shigella flexneri 2a str.
2457T]
gi|73854462|gb|AAZ87169.1| transcription termination; L factor [Shigella sonnei Ss046]
gi|81239827|gb|ABB60537.1| NusB [Shigella dysenteriae Sd197]
gi|81244315|gb|ABB65023.1| NusB [Shigella boydii Sb227]
gi|85674556|dbj|BAE76196.1| transcription antitermination protein [Escherichia coli str. K12
substr. W3110]
gi|91071059|gb|ABE05940.1| FJECB transcription termination; L factor [Escherichia coli UTI89]
gi|110342269|gb|ABG68506.1| N utilization substance protein B [Escherichia coli 536]
gi|110613986|gb|ABF02653.1| transcription termination L factor [Shigella flexneri 5 str. 8401]
gi|157065617|gb|ABV04872.1| transcription termination/antitermination factor NusB [Escherichia
coli HS]
gi|157076913|gb|ABV16621.1| transcription termination/antitermination factor NusB [Escherichia
coli E24377A]
gi|169756140|gb|ACA78839.1| NusB antitermination factor [Escherichia coli ATCC 8739]
gi|169887837|gb|ACB01544.1| transcription antitermination protein [Escherichia coli str. K-12
substr. DH10B]
gi|170123208|gb|EDS92139.1| transcription termination/antitermination factor NusB [Escherichia
albertii TW07627]
gi|170518873|gb|ACB17051.1| transcription termination/antitermination factor NusB [Escherichia
coli SMS-3-5]
gi|187427979|gb|ACD07253.1| transcription termination/antitermination factor NusB [Shigella
boydii CDC 3083-94]
gi|187768302|gb|EDU32146.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4196]
gi|188015850|gb|EDU53972.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4113]
gi|188488353|gb|EDU63456.1| transcription termination/antitermination factor NusB [Escherichia
coli 53638]
gi|188999358|gb|EDU68344.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4076]
gi|189356022|gb|EDU74441.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4401]
gi|189362518|gb|EDU80937.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4486]
gi|189368081|gb|EDU86497.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4501]
gi|189373730|gb|EDU92146.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC869]
gi|189377377|gb|EDU95793.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC508]
gi|190903212|gb|EDV62934.1| transcription termination/antitermination factor NusB [Escherichia
coli B7A]
gi|190906236|gb|EDV65848.1| transcription termination/antitermination factor NusB [Escherichia
coli F11]
gi|192927205|gb|EDV81826.1| transcription termination/antitermination factor NusB [Escherichia
coli E22]
gi|192958082|gb|EDV88524.1| transcription termination/antitermination factor NusB [Escherichia
coli E110019]
gi|194413133|gb|EDX29420.1| transcription termination/antitermination factor NusB [Escherichia
coli B171]
gi|194419112|gb|EDX35195.1| transcription termination/antitermination factor NusB [Shigella
dysenteriae 1012]
gi|194422223|gb|EDX38225.1| transcription termination/antitermination factor NusB [Escherichia
coli 101-1]
gi|208729142|gb|EDZ78743.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4206]
gi|208732559|gb|EDZ81247.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4045]
gi|208737162|gb|EDZ84846.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4042]
gi|209158259|gb|ACI35692.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. EC4115]
gi|209744064|gb|ACI70339.1| transcription termination factor NusB [Escherichia coli]
gi|209744066|gb|ACI70340.1| transcription termination factor NusB [Escherichia coli]
gi|209744068|gb|ACI70341.1| transcription termination factor NusB [Escherichia coli]
gi|209744070|gb|ACI70342.1| transcription termination factor NusB [Escherichia coli]
gi|209744072|gb|ACI70343.1| transcription termination factor NusB [Escherichia coli]
gi|209910888|dbj|BAG75962.1| N utilization substance protein B [Escherichia coli SE11]
gi|215263569|emb|CAS07899.1| transcription antitermination protein NusB [Escherichia coli
O127:H6 str. E2348/69]
gi|217321910|gb|EEC30334.1| transcription termination/antitermination factor NusB [Escherichia
coli O157:H7 str. TW14588]
gi|218350608|emb|CAU96300.1| transcription antitermination protein [Escherichia coli 55989]
gi|218359747|emb|CAQ97288.1| transcription antitermination protein [Escherichia coli IAI1]
gi|218364094|emb|CAR01759.1| transcription antitermination protein [Escherichia coli S88]
gi|218368661|emb|CAR16400.1| transcription antitermination protein [Escherichia coli IAI39]
gi|218425843|emb|CAR06649.1| transcription antitermination protein [Escherichia coli ED1a]
gi|218430795|emb|CAR11669.1| transcription antitermination protein [Escherichia coli UMN026]
gi|222032211|emb|CAP74950.1| N utilization substance protein B [Escherichia coli LF82]
gi|226898800|gb|EEH85059.1| transcription termination [Escherichia sp. 3_2_53FAA]
gi|227838662|gb|EEJ49128.1| N utilization substance B [Escherichia coli 83972]
gi|238863676|gb|ACR65674.1| transcription antitermination protein [Escherichia coli BW2952]
gi|242376194|emb|CAQ30885.1| transcription antitermination protein NusB, subunit of NusB-NusE
complex [Escherichia coli BL21(DE3)]
gi|253325643|gb|ACT30245.1| NusB antitermination factor [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972383|gb|ACT38054.1| transcription antitermination protein NusB [Escherichia coli B str.
REL606]
gi|253976593|gb|ACT42263.1| transcription antitermination protein NusB [Escherichia coli
BL21(DE3)]
gi|254590999|gb|ACT70360.1| transcription antitermination protein [Escherichia coli O157:H7
str. TW14359]
gi|257752285|dbj|BAI23787.1| transcription antitermination protein NusB [Escherichia coli
O26:H11 str. 11368]
gi|257757761|dbj|BAI29258.1| transcription antitermination protein NusB [Escherichia coli
O103:H2 str. 12009]
gi|257762930|dbj|BAI34425.1| transcription antitermination protein NusB [Escherichia coli
O111:H- str. 11128]
gi|260450397|gb|ACX40819.1| NusB antitermination factor [Escherichia coli DH1]
gi|281177586|dbj|BAI53916.1| N utilization substance protein B [Escherichia coli SE15]
gi|281599748|gb|ADA72732.1| N utilization substance protein B [Shigella flexneri 2002017]
gi|284920225|emb|CBG33284.1| N utilization substance protein B [Escherichia coli 042]
gi|290761195|gb|ADD55156.1| N utilization substance protein B-like protein [Escherichia coli
O55:H7 str. CB9615]
gi|291325011|gb|EFE64426.1| transcription antitermination factor NusB [Escherichia coli B088]
gi|291429388|gb|EFF02408.1| N utilization substance protein B [Escherichia coli FVEC1412]
gi|291433728|gb|EFF06701.1| transcription antitermination factor NusB [Escherichia coli B185]
gi|291471740|gb|EFF14223.1| transcription antitermination factor NusB [Escherichia coli B354]
gi|294491145|gb|ADE89901.1| transcription termination/antitermination factor NusB [Escherichia
coli IHE3034]
gi|298280260|gb|EFI21764.1| N utilization substance protein B [Escherichia coli FVEC1302]
gi|299880009|gb|EFI88220.1| transcription antitermination factor NusB [Escherichia coli MS
196-1]
gi|300298609|gb|EFJ54994.1| transcription antitermination factor NusB [Escherichia coli MS
185-1]
gi|300304216|gb|EFJ58736.1| transcription antitermination factor NusB [Escherichia coli MS
200-1]
gi|300315317|gb|EFJ65101.1| transcription antitermination factor NusB [Escherichia coli MS
175-1]
gi|300355963|gb|EFJ71833.1| transcription antitermination factor NusB [Escherichia coli MS
198-1]
gi|300397476|gb|EFJ81014.1| transcription antitermination factor NusB [Escherichia coli MS
69-1]
gi|300404614|gb|EFJ88152.1| transcription antitermination factor NusB [Escherichia coli MS
84-1]
gi|300407584|gb|EFJ91122.1| transcription antitermination factor NusB [Escherichia coli MS
45-1]
gi|300414655|gb|EFJ97965.1| transcription antitermination factor NusB [Escherichia coli MS
115-1]
gi|300419589|gb|EFK02900.1| transcription antitermination factor NusB [Escherichia coli MS
182-1]
gi|300452533|gb|EFK16153.1| transcription antitermination factor NusB [Escherichia coli MS
116-1]
gi|300457856|gb|EFK21349.1| transcription antitermination factor NusB [Escherichia coli MS
21-1]
gi|300461861|gb|EFK25354.1| transcription antitermination factor NusB [Escherichia coli MS
187-1]
gi|300527130|gb|EFK48199.1| transcription antitermination factor NusB [Escherichia coli MS
119-7]
gi|300529151|gb|EFK50213.1| transcription antitermination factor NusB [Escherichia coli MS
107-1]
gi|300843061|gb|EFK70821.1| transcription antitermination factor NusB [Escherichia coli MS
124-1]
gi|301074483|gb|EFK89289.1| transcription antitermination factor NusB [Escherichia coli MS
146-1]
gi|305853881|gb|EFM54320.1| transcription antitermination protein NusB [Escherichia coli NC101]
gi|306907711|gb|EFN38213.1| NusB antitermination factor [Escherichia coli W]
gi|307552321|gb|ADN45096.1| N utilization substance protein B [Escherichia coli ABU 83972]
gi|307628115|gb|ADN72419.1| transcription antitermination protein NusB [Escherichia coli UM146]
gi|308121512|gb|EFO58774.1| transcription antitermination factor NusB [Escherichia coli MS
145-7]
gi|308924581|gb|EFP70076.1| transcription antitermination factor NusB [Shigella dysenteriae
1617]
gi|309700678|emb|CBI99974.1| N utilization substance protein B [Escherichia coli ETEC H10407]
gi|310337160|gb|EFQ02298.1| transcription antitermination factor NusB [Escherichia coli
1827-70]
gi|312290796|gb|EFR18673.1| transcription antitermination factor NusB [Escherichia coli
2362-75]
gi|312944993|gb|ADR25820.1| transcription antitermination protein NusB [Escherichia coli O83:H1
str. NRG 857C]
gi|313646967|gb|EFS11424.1| transcription antitermination factor NusB [Shigella flexneri 2a
str. 2457T]
gi|315059693|gb|ADT74020.1| transcription antitermination protein [Escherichia coli W]
gi|315135098|dbj|BAJ42257.1| N utilization substance protein B-like protein [Escherichia coli
DH1]
gi|315256241|gb|EFU36209.1| transcription antitermination factor NusB [Escherichia coli MS
85-1]
gi|315289869|gb|EFU49259.1| transcription antitermination factor NusB [Escherichia coli MS
110-3]
gi|315294205|gb|EFU53556.1| transcription antitermination factor NusB [Escherichia coli MS
153-1]
gi|315299582|gb|EFU58830.1| transcription antitermination factor NusB [Escherichia coli MS
16-3]
gi|315616644|gb|EFU97261.1| transcription antitermination factor NusB [Escherichia coli 3431]
gi|320173766|gb|EFW48949.1| Transcription termination protein NusB [Shigella dysenteriae CDC
74-1112]
gi|320181602|gb|EFW56517.1| Transcription termination protein NusB [Shigella boydii ATCC 9905]
gi|320186045|gb|EFW60790.1| Transcription termination protein NusB [Shigella flexneri CDC
796-83]
gi|320192829|gb|EFW67469.1| Transcription termination protein NusB [Escherichia coli O157:H7
str. EC1212]
gi|320197146|gb|EFW71763.1| Transcription termination protein NusB [Escherichia coli WV_060327]
gi|320201657|gb|EFW76233.1| Transcription termination protein NusB [Escherichia coli EC4100B]
gi|320638408|gb|EFX08122.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. G5101]
gi|320643788|gb|EFX12911.1| transcription antitermination protein NusB [Escherichia coli
O157:H- str. 493-89]
gi|320649139|gb|EFX17717.1| transcription antitermination protein NusB [Escherichia coli
O157:H- str. H 2687]
gi|320656032|gb|EFX23948.1| transcription antitermination protein NusB [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320661182|gb|EFX28613.1| transcription antitermination protein NusB [Escherichia coli O55:H7
str. USDA 5905]
gi|320665158|gb|EFX32251.1| transcription antitermination protein NusB [Escherichia coli
O157:H7 str. LSU-61]
gi|323152116|gb|EFZ38409.1| transcription antitermination factor NusB [Escherichia coli
EPECa14]
gi|323160477|gb|EFZ46425.1| transcription antitermination factor NusB [Escherichia coli
E128010]
gi|323164207|gb|EFZ50014.1| transcription antitermination factor NusB [Shigella sonnei 53G]
gi|323170498|gb|EFZ56148.1| transcription antitermination factor NusB [Escherichia coli LT-68]
gi|323178321|gb|EFZ63899.1| transcription antitermination factor NusB [Escherichia coli 1180]
gi|323184758|gb|EFZ70129.1| transcription antitermination factor NusB [Escherichia coli 1357]
gi|323191334|gb|EFZ76597.1| transcription antitermination factor NusB [Escherichia coli
RN587/1]
gi|323379741|gb|ADX52009.1| NusB antitermination factor [Escherichia coli KO11]
gi|323938601|gb|EGB34850.1| transcription antitermination protein NusB [Escherichia coli E1520]
gi|323943222|gb|EGB39378.1| transcription antitermination protein NusB [Escherichia coli E482]
gi|323945317|gb|EGB41373.1| transcription antitermination protein NusB [Escherichia coli H120]
gi|323952972|gb|EGB48840.1| transcription antitermination protein NusB [Escherichia coli H252]
gi|323958609|gb|EGB54312.1| transcription antitermination protein NusB [Escherichia coli H263]
gi|323963402|gb|EGB58964.1| transcription antitermination protein NusB [Escherichia coli H489]
gi|323965098|gb|EGB60557.1| transcription antitermination protein NusB [Escherichia coli M863]
gi|323972266|gb|EGB67476.1| transcription antitermination protein NusB [Escherichia coli TA007]
gi|323976103|gb|EGB71196.1| transcription antitermination protein NusB [Escherichia coli
TW10509]
gi|324010093|gb|EGB79312.1| transcription antitermination factor NusB [Escherichia coli MS
57-2]
gi|324010676|gb|EGB79895.1| transcription antitermination factor NusB [Escherichia coli MS
60-1]
gi|324016678|gb|EGB85897.1| transcription antitermination factor NusB [Escherichia coli MS
117-3]
gi|324116900|gb|EGC10813.1| transcription antitermination protein NusB [Escherichia coli E1167]
gi|326341177|gb|EGD64969.1| Transcription termination protein NusB [Escherichia coli O157:H7
str. 1044]
gi|326346048|gb|EGD69787.1| Transcription termination protein NusB [Escherichia coli O157:H7
str. 1125]
gi|327254737|gb|EGE66353.1| transcription antitermination factor NusB [Escherichia coli
STEC_7v]
gi|330910210|gb|EGH38720.1| transcription termination protein NusB [Escherichia coli AA86]
gi|331037731|gb|EGI09951.1| transcription antitermination factor NusB [Escherichia coli H736]
gi|331045751|gb|EGI17877.1| transcription antitermination factor NusB [Escherichia coli M605]
gi|331051091|gb|EGI23143.1| transcription antitermination factor NusB [Escherichia coli M718]
gi|331054718|gb|EGI26727.1| transcription antitermination factor NusB [Escherichia coli TA206]
gi|331060215|gb|EGI32179.1| transcription antitermination factor NusB [Escherichia coli TA143]
gi|331065989|gb|EGI37873.1| transcription antitermination factor NusB [Escherichia coli TA271]
gi|331070950|gb|EGI42309.1| transcription antitermination factor NusB [Escherichia coli TA280]
gi|331076141|gb|EGI47423.1| transcription antitermination factor NusB [Escherichia coli H591]
gi|331081011|gb|EGI52176.1| transcription antitermination factor NusB [Escherichia coli H299]
gi|332086022|gb|EGI91186.1| transcription antitermination factor NusB [Shigella dysenteriae
155-74]
gi|332094566|gb|EGI99612.1| transcription antitermination factor NusB [Shigella boydii 5216-82]
gi|332098578|gb|EGJ03544.1| transcription antitermination factor NusB [Shigella boydii 3594-74]
gi|332103914|gb|EGJ07260.1| transcription termination/antitermination factor NusB [Shigella sp.
D9]
gi|332341779|gb|AEE55113.1| transcription antitermination factor protein NusB [Escherichia coli
UMNK88]
gi|332760696|gb|EGJ90984.1| transcription antitermination factor NusB [Shigella flexneri
4343-70]
gi|332761743|gb|EGJ92022.1| transcription antitermination factor NusB [Shigella flexneri
2747-71]
gi|332764293|gb|EGJ94529.1| transcription antitermination factor NusB [Shigella flexneri K-671]
gi|332768521|gb|EGJ98704.1| transcription antitermination factor NusB [Shigella flexneri
2930-71]
gi|333007978|gb|EGK27454.1| transcription antitermination factor NusB [Shigella flexneri K-218]
gi|333008611|gb|EGK28079.1| transcription antitermination factor NusB [Shigella flexneri VA-6]
gi|333010858|gb|EGK30284.1| transcription antitermination factor NusB [Shigella flexneri K-272]
gi|333021357|gb|EGK40610.1| transcription antitermination factor NusB [Shigella flexneri K-227]
gi|333022014|gb|EGK41259.1| transcription antitermination factor NusB [Shigella flexneri K-304]
gi|1096319|prf||2111328A NusB protein
Length = 139
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPVIRPNK 138
>gi|123443366|ref|YP_001007340.1| transcription antitermination protein NusB [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332160727|ref|YP_004297304.1| transcription antitermination protein NusB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|166215729|sp|A1JNS2|NUSB_YERE8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|122090327|emb|CAL13193.1| N utilization substance protein B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604606|emb|CBY26104.1| transcription termination protein NusB [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664957|gb|ADZ41601.1| transcription antitermination protein NusB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330863853|emb|CBX73946.1| N utilization substance protein B homolog [Yersinia enterocolitica
W22703]
Length = 138
Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ ++
Sbjct: 118 DSHKFVNGVLDKVAPTVRKRK 138
>gi|223933712|ref|ZP_03625687.1| NusB antitermination factor [Streptococcus suis 89/1591]
gi|253752490|ref|YP_003025631.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis SC84]
gi|253754316|ref|YP_003027457.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis P1/7]
gi|253756250|ref|YP_003029390.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis BM407]
gi|302024430|ref|ZP_07249641.1| transcription antitermination protein NusB [Streptococcus suis
05HAS68]
gi|330833433|ref|YP_004402258.1| transcription antitermination protein NusB [Streptococcus suis ST3]
gi|223897628|gb|EEF64014.1| NusB antitermination factor [Streptococcus suis 89/1591]
gi|251816779|emb|CAZ52422.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis SC84]
gi|251818714|emb|CAZ56550.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis BM407]
gi|251820562|emb|CAR47318.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus suis P1/7]
gi|319758898|gb|ADV70840.1| transcription antitermination protein NusB [Streptococcus suis
JS14]
gi|329307656|gb|AEB82072.1| transcription antitermination protein NusB [Streptococcus suis ST3]
Length = 139
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + R R A+QA+ ++ Y R E +
Sbjct: 1 MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDR--------EEEQEGVEIPLFLLN 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E +
Sbjct: 53 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 112
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A +F KF+N VL + ++E
Sbjct: 113 ELAKEFSDESSAKFVNGVLSQFIKEE 138
>gi|124268133|ref|YP_001022137.1| putative N utilization substance B [Methylibium petroleiphilum PM1]
gi|124260908|gb|ABM95902.1| putative N utilization substance B (transcriptional
antiterminator)(l factor) transcription regulator
protein [Methylibium petroleiphilum PM1]
Length = 176
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 14/155 (9%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+K + S RR +R A+Q LYQ + G I + + + D
Sbjct: 25 RKPAQKSSRRR-SREFALQGLYQWLVSGSEAVVIEAH-----------MRELDGFKQADA 72
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
F ++HG + +D +++ + K + L I +L G EL C +P V
Sbjct: 73 AHFDALLHGCVAEAAALDAVLARHVDRKTT--ELSPIEHGVLMIGAYELKHCIDIPYRVA 130
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+E V +A F D K++N VLDK +
Sbjct: 131 INEAVELAKSFGGTDGHKYVNGVLDKAAADLRPLE 165
>gi|183982195|ref|YP_001850486.1| N utilization substance protein NusB [Mycobacterium marinum M]
gi|183175521|gb|ACC40631.1| N utilization substance protein NusB [Mycobacterium marinum M]
Length = 173
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ K R AR AV +++ + G EI TEL +
Sbjct: 5 RPGKPVKGRHQARKRAVDLMFEAEARGLGPGEIADLR--------TELAETKPDVAPLHP 56
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + G+ HID LI+S L + W+ RL + +ILR V EL+ VP V +
Sbjct: 57 YTAAVARGIDQHAAHIDDLITSHL-QGWTLDRLPAVDRAILRVAVWELLYADDVPEPVAV 115
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 116 DEAVELAKELSTDDSPSFVNGVLGQV 141
>gi|51244954|ref|YP_064838.1| transcription termination factor (NusB) [Desulfotalea psychrophila
LSv54]
gi|81642559|sp|Q6AP93|NUSB_DESPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|50875991|emb|CAG35831.1| probable transcription termination factor (NusB) [Desulfotalea
psychrophila LSv54]
Length = 141
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AA+Q LYQ D I S E + + + +
Sbjct: 1 MSIRRFAREAALQFLYQDDFIPESADTPGELKERF-----EQFCEIYQVNKKGRTYALNL 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV+ ++ ID LI W SR+ ++LR E+ C VP EV I+E V
Sbjct: 56 IAGVLADQEAIDRLIEEA-AVNWRMSRISATDRNLLRVATFEINFCDDVPAEVAINEAVE 114
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + PKF+N VLD V
Sbjct: 115 IAKRFCGDESPKFVNGVLDAV 135
>gi|24213164|ref|NP_710645.1| transcription antitermination protein NusB [Leptospira interrogans
serovar Lai str. 56601]
gi|32171656|sp|Q8F8T8|NUSB_LEPIN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|61214188|sp|Q72V97|NUSB_LEPIC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|24193877|gb|AAN47663.1| transcription antitermination protein NusB [Leptospira interrogans
serovar Lai str. 56601]
Length = 138
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R AV ALYQ+++ E++ + + ++ I
Sbjct: 1 MSARRTSREIAVMALYQLELTQPPLKEVLKFKW-----------YDKKTEPEERDFAVSI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ ++ ID LI ++ W FSR+ ++ +ILR + L+ VP V I E V
Sbjct: 50 VNGVVKNQEQIDTLIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ +F + +F+N VLD + + E
Sbjct: 109 LTKEFESEESARFVNGVLDAILKNE 133
>gi|157692931|ref|YP_001487393.1| transcription antitermination protein NusB [Bacillus pumilus
SAFR-032]
gi|166918803|sp|A8FF16|NUSB_BACP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157681689|gb|ABV62833.1| transcription antitermination protein NusB [Bacillus pumilus
SAFR-032]
Length = 131
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+QID+ E I+ + +F ++
Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E + +A
Sbjct: 47 GVLEQKDKLDDMISQHLVN-WKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F PKF+N VL + +
Sbjct: 106 KLFGDDKAPKFVNGVLSNIKNDLK 129
>gi|114771638|ref|ZP_01449042.1| transcription antitermination factor NusB [alpha proteobacterium
HTCC2255]
gi|114547710|gb|EAU50600.1| transcription antitermination factor NusB [alpha proteobacterium
HTCC2255]
Length = 151
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +KK +K +RL AVQAL+Q++ E+ ++ +RF A E
Sbjct: 1 MT---SKKQMK-----SASRLYAVQALFQMEASEQGMNEVRDQFVNHRFGATLEG---EE 49
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y+ ++E F ++ ++++ ID + L KW R+D L ++ R E I
Sbjct: 50 YVEGNVELFEQLLFTAVNQQAAIDQMTDRALVAKWPIDRIDPTLRALFRTAGAEFII-DD 108
Query: 121 VPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKR 161
P +V I E+V +A FF E +F+NA+LD ++R+ +
Sbjct: 109 TPPKVAIVEFVDVAKAFFPDGNETRFVNAILDHMAREVHPDK 150
>gi|315639636|ref|ZP_07894776.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
gi|315484597|gb|EFU75053.1| N utilization substance protein B [Enterococcus italicus DSM 15952]
Length = 150
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R AVQ+L+ +D ST + + + ++ + ++
Sbjct: 1 MSKELSRHDIREMAVQSLFPLDF---STEFSKQDAIAHAIEVNQYDLLDEEEENFVPDYL 57
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV + K +D I S L W RL + +ILR + E+ VP +V+++E
Sbjct: 58 DWLVSGVCEHKNELDKEIESFLRPGWKIGRLAKMDVTILRLAIFEMQHAEDVPNKVVLNE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ + F KF+N VL ++ K E
Sbjct: 118 AIELTKTFSDDQSRKFVNGVLSSINNKLEA 147
>gi|74318210|ref|YP_315950.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
gi|119390844|sp|Q3SGU8|NUSB_THIDA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|74057705|gb|AAZ98145.1| NusB antitermination factor [Thiobacillus denitrificans ATCC 25259]
Length = 145
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R +AR +Q +Y I G T I + + + + D +FR
Sbjct: 1 MAGSRKVAREFTLQGIYAWMIGGADVTLIAANLKE-----------DEQFKRADEAYFRT 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + + I+ L + L I SIL G EL+ C VP V I+E V
Sbjct: 50 LLYGVLKEEDMLSSRIAPLLDRA--VAELSPIERSILLIGAYELLHCPDVPWRVAINESV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F D K+IN VLDK+++
Sbjct: 108 ELAKKFGGTDGHKYINGVLDKLAQDVRAVE 137
>gi|242278127|ref|YP_002990256.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
gi|242121021|gb|ACS78717.1| NusB antitermination factor [Desulfovibrio salexigens DSM 2638]
Length = 155
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 10/155 (6%)
Query: 10 LKLSHR---RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+++S R R+ A Q LY + + E + + +
Sbjct: 1 MQMSQTKGLRRKGRVLAFQVLYGLSFVPPHGGWTTERIYNQSPAVIRETEEDLIL----- 55
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ R ++ G+ + ++ +D +I ++ W R+ + +ILR V EL+ +P++V
Sbjct: 56 -FARELLIGIWNAQEELDEVIGRY-SKHWKIERIAKVELAILRLAVYELVHKPDIPLKVG 113
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+E + +A F G+ FIN +LD V+R + +
Sbjct: 114 INEGIELAKKFGDGNSRNFINGILDAVARDIDTGK 148
>gi|194290431|ref|YP_002006338.1| transcription antitermination protein nusb [Cupriavidus taiwanensis
LMG 19424]
gi|193224266|emb|CAQ70275.1| antitermination factor (N UTILIZATION SUBSTANCE B) (TRANSCRIPTIONAL
ANTITERMINATOR) [Cupriavidus taiwanensis LMG 19424]
Length = 172
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A+Q LYQ + I + + D E F
Sbjct: 31 PKSARRRSRELALQGLYQWLLNRNDIGAIQAHL-----------HDAQGFNKADREHFDA 79
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + + + L S L + + L G EL+ C +P +V+I+E V
Sbjct: 80 LLNGAVREEARLTAAFEPFLDR--SVDELSPVERAALLVGSYELVHCLDIPYKVVINEAV 137
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ F + K++N VLDK++ +
Sbjct: 138 ELTKTFGGVEGYKYVNGVLDKLAAQVRAAEVAA 170
>gi|134098647|ref|YP_001104308.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
gi|291003667|ref|ZP_06561640.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
gi|166918811|sp|A4FBF8|NUSB_SACEN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|133911270|emb|CAM01383.1| NusB antitermination factor [Saccharopolyspora erythraea NRRL 2338]
Length = 148
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 18/160 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV LY+ D+ G ++S V S L E+ +
Sbjct: 1 MGARNKARKRAVDVLYEADLRGEDAVTLLSGR------------VGSPDLPPVNEYTVTL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYV 131
+ GV +Q ID L+ E W+ +R+ + ++LR G+ EL+ VP V I E V
Sbjct: 49 VEGVTANRQRIDELLVEH-AEGWTLARMPAVDRAVLRLGLYELLWRSDDVPPAVAIDEAV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGCVSA 167
+ D P+F+N VL +++ R R A
Sbjct: 108 ELVKALSTDDSPRFVNGVLGRIAGIGDRLRSTLRGANPGA 147
>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
Length = 453
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ ++ + + Y A +L + +D + I++GV+
Sbjct: 6 ARELALLV-----------SKAVEDEGAYANLALNKLLEQYQPGKLDRAFATEIVYGVLR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID +++ L + + + + +ILR G +++ VP +E V +A +
Sbjct: 55 NLNTIDWVLAHFLKQ--PLASQTVWIRNILRMGTYQIMFMPRVPDSAACNESVNLAKKYG 112
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
+ PKF+N VL V+R++
Sbjct: 113 HQGAPKFVNGVLRNVARQQHSLE 135
>gi|256826969|ref|YP_003150928.1| transcription antitermination factor NusB [Cryptobacterium curtum
DSM 15641]
gi|256583112|gb|ACU94246.1| transcription antitermination factor NusB [Cryptobacterium curtum
DSM 15641]
Length = 162
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ H R +AR AVQ LY+ +I +EI+ R A + +
Sbjct: 1 MAKRHERTLARRMAVQVLYEGEITDTLASEIV-----LRPDAVPDGGALP-------AYA 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV + ID I++ +E WS R+ ++ +I+R V E+ C VP+ V I+E
Sbjct: 49 VSLVEGVCAHRVAIDNKIAAA-SENWSVGRMPLVDRAIMRLAVFEMTHCDDVPLSVSINE 107
Query: 130 YVCIAHDFFY-GDEPKFINAVLDKVSRKEEI 159
V +A +F D +F+N +L +++R++
Sbjct: 108 AVELAKEFGGADDSARFVNGILGRIARQDNE 138
>gi|183601040|ref|ZP_02962533.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
gi|188019378|gb|EDU57418.1| hypothetical protein PROSTU_04661 [Providencia stuartii ATCC 25827]
Length = 138
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G + +++ E+ E VD+ +FR ++ GV +
Sbjct: 11 ECAVQAIYSWQLSGNNVSDVEYEFIA-----------EQDMSDVDVIYFRELLSGVANNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 AKLDQLMAPFLSRQ--LEELGQVEKAILRVAMYELSYREDVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + K+
Sbjct: 118 DSHKFVNGVLDKAAPSVRRKK 138
>gi|253990956|ref|YP_003042312.1| transcription antitermination protein NusB [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782406|emb|CAQ85570.1| N utilization substance protein B [Photorhabdus asymbiotica]
Length = 139
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSGNDIADVELQFLS-----------EQDVTGVDVTYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 VKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSYRDDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|121605810|ref|YP_983139.1| transcription antitermination protein NusB [Polaromonas
naphthalenivorans CJ2]
gi|120594779|gb|ABM38218.1| NusB antitermination factor [Polaromonas naphthalenivorans CJ2]
Length = 173
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K R AR A+QALYQ + I D + D
Sbjct: 24 KKAADKSARTRAREFALQALYQHLVGQNGADSI-----------DAFTRDLVGFHKADSA 72
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ ++ +D I+ L + + + +IL G E C VP V+I
Sbjct: 73 HYDALLHGCIESEKALDENITPLLDR--KMAEISPVEHAILWIGAYEFTNCLDVPYRVVI 130
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+E + +A F D K++N VL K++
Sbjct: 131 NECIELAKAFGGTDGHKYVNGVLHKMAPSLRASEVAA 167
>gi|149181858|ref|ZP_01860347.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
gi|148850397|gb|EDL64558.1| transcription antitermination protein NusB [Bacillus sp. SG-1]
Length = 133
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+Q+D+ G + E ++ E+ +++
Sbjct: 2 KRRTAREKALQALFQMDMSGMTADEALTNVYE---------------DTPSDEYLENLVN 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K+ ID LI L EKWSF RL + +ILR V EL+E VP +V+I+E + IA
Sbjct: 47 GATENKEKIDGLIKENL-EKWSFDRLAKVDRNILRVAVYELLEADDVPSKVVINEAIEIA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ KFIN VL KV
Sbjct: 106 KTYGDDQSGKFINGVLSKV 124
>gi|302533374|ref|ZP_07285716.1| transcription antitermination factor NusB [Streptomyces sp. C]
gi|302442269|gb|EFL14085.1| transcription antitermination factor NusB [Streptomyces sp. C]
Length = 143
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G E+++++ + D + V + +
Sbjct: 1 MAARSNARKRAFQILFEADQRGVPVREVLADWIRHSRSDDRQPPVN--------AFTMDL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G D+ + ID LI W R+ ++ +ILR G ELI P V I E V
Sbjct: 53 VEGYADKVKRIDDLIV-TYAVDWELDRMPVVDRNILRLGAYELIWVDETPDAVAIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+A +F D P F+N +L + + R G
Sbjct: 112 LAKEFSTDDSPAFVNGLLARFKDLKPSLRRGE 143
>gi|157828080|ref|YP_001494322.1| transcription antitermination protein NusB [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165932780|ref|YP_001649569.1| transcription antitermination protein NusB [Rickettsia rickettsii
str. Iowa]
gi|166215712|sp|A8GQY9|NUSB_RICRS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035898|sp|B0BWD7|NUSB_RICRO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157800561|gb|ABV75814.1| transcription antitermination protein NusB [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165907867|gb|ABY72163.1| N utilization substance protein B [Rickettsia rickettsii str. Iowa]
Length = 156
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKLVFENIHKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|295399119|ref|ZP_06809101.1| NusB antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110278|ref|YP_003988594.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
gi|294978585|gb|EFG54181.1| NusB antitermination factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215379|gb|ADP73983.1| NusB antitermination factor [Geobacillus sp. Y4.1MC1]
Length = 132
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ E + + R ++
Sbjct: 2 KRHEAREKALQALFQIDVGRIPPEEALQNVM---------------GGEEADSFLRQLVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + ++ ID L+ + L EKW+ R+ + +ILR E+ VPV+V + E V +A
Sbjct: 47 GVTEHQEEIDELLRANL-EKWTLERVANVDRAILRMAAYEMKYLDDVPVKVSLDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F +F+N VL KV
Sbjct: 106 KKFGDTKSGRFVNGVLSKV 124
>gi|227327507|ref|ZP_03831531.1| transcription antitermination protein NusB [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 139
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ +
Sbjct: 118 DSHKFVNGVLDKVAPSVRKGK 138
>gi|300715571|ref|YP_003740374.1| N utilization substance protein B [Erwinia billingiae Eb661]
gi|299061407|emb|CAX58517.1| N utilization substance protein B [Erwinia billingiae Eb661]
Length = 139
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + +++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDISDVEYQFLA-----------EQDVKDVDISYFRELLVGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRQ--LEELGQVEKAILRISLFELSKRADVPYKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPYIRPNK 138
>gi|283784235|ref|YP_003364100.1| N utilization substance protein B [Citrobacter rodentium ICC168]
gi|282947689|emb|CBG87244.1| N utilization substance protein B [Citrobacter rodentium ICC168]
Length = 139
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVMYFRELLSGVATNS 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPVIRPNK 138
>gi|242240313|ref|YP_002988494.1| transcription antitermination protein NusB [Dickeya dadantii
Ech703]
gi|242132370|gb|ACS86672.1| NusB antitermination factor [Dickeya dadantii Ech703]
Length = 139
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E D+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGADITYFRELLTGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ + L + +ILR V EL + VP +V I+E + +A F
Sbjct: 60 ERLDALMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|57233932|ref|YP_181990.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
gi|119390764|sp|Q3Z709|NUSB_DEHE1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|57224380|gb|AAW39437.1| N utilization substance protein B [Dehalococcoides ethenogenes 195]
Length = 143
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR +QALY+ D+ G + +++ T E+ + E+
Sbjct: 1 MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLT-----------ETPQTEENAEFIFR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + ++ K +D I + W +L I ++LR + E+I + VP++V I+E V
Sbjct: 50 LTNAIVKHKDLLDENIRQFASA-WPVEQLSYIDRNVLRLAIFEIIHENDVPIKVAINEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+A F +FIN VL VS+
Sbjct: 109 ELAKSFGGNSSARFINGVLSSVSK 132
>gi|169824540|ref|YP_001692151.1| transcription terminator [Finegoldia magna ATCC 29328]
gi|297588522|ref|ZP_06947165.1| transcription antitermination factor NusB [Finegoldia magna ATCC
53516]
gi|303233660|ref|ZP_07320314.1| transcription antitermination factor NusB [Finegoldia magna
BVS033A4]
gi|238687751|sp|B0S1M1|NUSB_FINM2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|167831345|dbj|BAG08261.1| transcription terminator [Finegoldia magna ATCC 29328]
gi|297573895|gb|EFH92616.1| transcription antitermination factor NusB [Finegoldia magna ATCC
53516]
gi|302495094|gb|EFL54846.1| transcription antitermination factor NusB [Finegoldia magna
BVS033A4]
Length = 137
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R +A+Q +Y++++ G + I E+ Y+ D+E+F+ I+
Sbjct: 2 SRRQSRKSAMQLIYEMNMNGDYDKQRIEEFCKYQN-----------INKNDIEFFKEIVL 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ I +I T++W+ R++ + SIL+ GV E++ S P V I+E V +A
Sbjct: 51 NFIEHIDDIVNII-ENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
++ FIN +L V +++E
Sbjct: 110 KEYSTEKSYSFINGILGSVLKRKE 133
>gi|301330723|ref|ZP_07223325.1| transcription antitermination factor NusB [Escherichia coli MS
78-1]
gi|300843384|gb|EFK71144.1| transcription antitermination factor NusB [Escherichia coli MS
78-1]
Length = 139
Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPVIRPNK 138
>gi|110597193|ref|ZP_01385482.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
DSM 13031]
gi|110341384|gb|EAT59849.1| transcription antitermination factor NusB [Chlorobium ferrooxidans
DSM 13031]
Length = 191
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY I+I T D ++F +
Sbjct: 28 MKTYRRQIREKILQALYTIEIRETDIDSAAGWLLTQEILDDANAM----------KFFNL 77
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + + ++ ID I+ T W SR+ +I +ILR + E++ C +P +V I+E +
Sbjct: 78 LLKSIKENREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAI 136
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + + +
Sbjct: 137 EIAKKFTSTDKSSKFVNGILDAIFNELKAE 166
>gi|261822526|ref|YP_003260632.1| transcription antitermination protein NusB [Pectobacterium wasabiae
WPP163]
gi|261606539|gb|ACX89025.1| NusB antitermination factor [Pectobacterium wasabiae WPP163]
Length = 139
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDIAYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDQLMAPFLSRH--IDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPSVRKGK 138
>gi|146321671|ref|YP_001201382.1| transcription antitermination protein NusB [Streptococcus suis
98HAH33]
gi|145692477|gb|ABP92982.1| Transcription termination factor [Streptococcus suis 98HAH33]
gi|292559096|gb|ADE32097.1| Antitermination protein NusB [Streptococcus suis GZ1]
Length = 140
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + R R A+QA+ ++ Y R E +
Sbjct: 2 MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDR--------EEEQEGVEIPLFLLN 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV D + +D +SS L W+ RL +I +I+R G+ E++ P V ++E +
Sbjct: 54 LVNGVADYRDDLDKELSSRLKAGWTLDRLTLIDKNIMRLGLFEILHFEETPDRVAVNEAI 113
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A +F KF+N VL + ++E
Sbjct: 114 ELAKEFSDESSAKFVNGVLSQFIKEE 139
>gi|73540472|ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha
JMP134]
gi|119390803|sp|Q474N5|NUSB_RALEJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|72117885|gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134]
Length = 167
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R +R A+Q LYQ + I + + D E F
Sbjct: 26 PKSARRRSRELALQGLYQWLLNRNDIGAIQAHL-----------HDAQGFNKADSEHFDA 74
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + + + L L + + L G EL+ C +P +V+I+E V
Sbjct: 75 LLNGAVREEARLTAAFEPFLDR--KVEELSPVERAALLVGSYELVHCVDIPYKVVINEAV 132
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ F + K++N VLDK++ +
Sbjct: 133 ELTKTFGGVEGYKYVNGVLDKLAAQVRSAEVAA 165
>gi|42527164|ref|NP_972262.1| transcription antitermination protein NusB [Treponema denticola
ATCC 35405]
gi|81570229|sp|Q73M53|NUSB_TREDE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|41817588|gb|AAS12173.1| N utilization substance protein B [Treponema denticola ATCC 35405]
Length = 136
Score = 99.5 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R+ A QAL D+ G ++ + + + + + + YL + ++
Sbjct: 1 MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNEDSIKDPNGYL-----FPKM 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G ++ ID +I L W RL+ + +ILR V LI P ++I E +
Sbjct: 52 MVLGTIENITEIDKVIQENLDN-WVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A DF D KF+NAVLD +
Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSI 132
>gi|171779279|ref|ZP_02920250.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282335|gb|EDT47762.1| hypothetical protein STRINF_01127 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 142
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R R A QAL+ ++ G F + VE + +
Sbjct: 6 TNSRRDLRERAFQALFSLEFGGEYLQAAE-------FAYTYDKTVEEDEEVQVPVFLLNL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV D + +D I + L WS RL + ++LR G+ E+ P V ++E +
Sbjct: 59 VKGVCDLQSELDQQIEAHLKSGWSLERLTLTDKALLRLGLYEVKYFEETPGRVAVNEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KF+N +L
Sbjct: 119 IAKKYSDETSAKFVNGLL 136
>gi|117923480|ref|YP_864097.1| NusB antitermination factor [Magnetococcus sp. MC-1]
gi|117607236|gb|ABK42691.1| NusB antitermination factor [Magnetococcus sp. MC-1]
Length = 165
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M + +K K R R +R A+Q LY +I +
Sbjct: 1 MAHKSDKSGKSRNTMRRGGRSKSREIALQVLYGCEIAHDPVGPALRNMLE---------- 50
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ +D ++F + GV ++ +D I WS R ++ +ILR G+ EL+
Sbjct: 51 -DPHSEGMDQDYFSQLTLGVEAEREVLDSWIGRAGAA-WSMDRFSVVDHNILRLGIYELL 108
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ VP VI++E + ++ F + +F+N V+DKV+ + + +
Sbjct: 109 KQPEVPHRVILNEAIELSKRFGGEESSRFVNGVMDKVANLVREEDAAPM 157
>gi|325290021|ref|YP_004266202.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
gi|324965422|gb|ADY56201.1| NusB antitermination factor [Syntrophobotulus glycolicus DSM 8271]
Length = 146
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR A++ LYQID+ G + E + + +I
Sbjct: 2 SRRLARETALKVLYQIDMTGE---------ISEMDKNIEYWAGEFNLPEKHQPFTKQLIE 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + +K+ ID +I +W+ R+ ++ +++R E++ + P V ++E + +A
Sbjct: 53 GTLSKKEEIDHMIGQN-AHEWALDRMSVVDRNLMRLASYEMLYLRNTPQRVSLNEAIELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F D KFIN +LD + +EE +
Sbjct: 112 KKFGGDDSAKFINGILDNLMTQEEKEW 138
>gi|196248859|ref|ZP_03147559.1| NusB antitermination factor [Geobacillus sp. G11MC16]
gi|196211735|gb|EDY06494.1| NusB antitermination factor [Geobacillus sp. G11MC16]
Length = 130
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ E I + VD + R ++
Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIGNV--------------TGSGEVD-PFLRQLVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A
Sbjct: 47 GVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124
>gi|194335654|ref|YP_002017448.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
gi|238693383|sp|B4SCZ7|NUSB_PELPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|194308131|gb|ACF42831.1| NusB antitermination factor [Pelodictyon phaeoclathratiforme BU-1]
Length = 171
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY I+I T AD ++F +
Sbjct: 1 MKTYRRQIREKILQALYTIEIRDTDIDSAAGWLLTEEILADPNAM----------KFFNM 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + + + ID I T W SR+ +I +I+R + E++ C +P +V I+E +
Sbjct: 51 LLKNIKEHMEEIDRYIVKH-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + +
Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAIFNDLKNE 139
>gi|52080965|ref|YP_079756.1| transcription antitermination protein NusB [Bacillus licheniformis
ATCC 14580]
gi|52786341|ref|YP_092170.1| transcription antitermination protein NusB [Bacillus licheniformis
ATCC 14580]
gi|319645077|ref|ZP_07999310.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
gi|81609065|sp|Q65HI7|NUSB_BACLD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|52004176|gb|AAU24118.1| NusB [Bacillus licheniformis ATCC 14580]
gi|52348843|gb|AAU41477.1| NusB [Bacillus licheniformis ATCC 14580]
gi|317392886|gb|EFV73680.1| N utilization substance protein B [Bacillus sp. BT1B_CT2]
Length = 129
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q+L+QID+ E + + +F +++
Sbjct: 2 KRRTAREKALQSLFQIDVSDIEPNEAMQHALDGQESD---------------AFFEQLVY 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ K+ ID +I L W RL + +ILR E+I +PV V ++E + +A
Sbjct: 47 GVLENKEKIDEMIKRHLVN-WKLDRLANVDRAILRLSAYEMIFLDDIPVNVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F KF+N VL + E
Sbjct: 106 KQFGDDKSAKFVNGVLSNIKSDLE 129
>gi|194016988|ref|ZP_03055601.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
7061]
gi|194011594|gb|EDW21163.1| transcription antitermination factor NusB [Bacillus pumilus ATCC
7061]
Length = 131
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+QID+ E I+ + +F ++
Sbjct: 2 KRRTAREKALQTLFQIDVSNIDPKEAITHALDEQESD---------------PFFEELVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+++K +D +IS L W R+ + +ILR V E++ +PV V ++E + +A
Sbjct: 47 GVLEQKDKLDDMISQHLVN-WKLDRIANVDRAILRLSVYEMVYQEDIPVSVSMNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F KF+N VL + +
Sbjct: 106 KLFGDDKASKFVNGVLSNIKNDLK 129
>gi|332297436|ref|YP_004439358.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
gi|332180539|gb|AEE16227.1| NusB antitermination factor [Treponema brennaborense DSM 12168]
Length = 138
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R+ A QAL+ D+ G S E+++ E DV + L + R++I G
Sbjct: 3 RRKGRILAFQALFSWDVGGMSVDELLAFPW-------MEADVLAKTDEGSLSFARLLIAG 55
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ ID LI + L W F R++ + ++LR V L+ H + ++I E + IA
Sbjct: 56 TIEHIDEIDSLIKAHLDS-WDFERINKVDLAVLRISVYPLLYQHDIHPSIVIDEAIDIAK 114
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+F GD +FINAVLD + +
Sbjct: 115 EFGSGDSFRFINAVLDNIRKD 135
>gi|238755140|ref|ZP_04616487.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
gi|238706700|gb|EEP99070.1| N utilization substance protein B [Yersinia ruckeri ATCC 29473]
Length = 138
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSKNDIADVELQFLS-----------EQDVKDVDITYFRELLSGVAVNV 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D ++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 TALDASMAPYLSRQ--LEELGQVEKAILRLAIFELSKRDDVPYKVAINEAIELAKIFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDKV+
Sbjct: 118 DSHKFVNGVLDKVA 131
>gi|50954771|ref|YP_062059.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|71648799|sp|Q6AF91|NUSB_LEIXX RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|50951253|gb|AAT88954.1| transcription termination factor [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 144
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L+ D+ S + + E + R I
Sbjct: 1 MSARTKARKRALDLLFSADVRQIS--------LAHALAVEAERAANEPAREASWLYAREI 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+D ++ ID I + W+ +R+ + +ILR GV EL+ VP V ISE V
Sbjct: 53 VDGVIDNQEEIDEQI-ETYAQGWTLARMPAVDRAILRIGVWELLFNDQVPDGVAISEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
A D F+N +L K+++ +
Sbjct: 112 AATVLSTDDSAGFVNGLLAKIAQNK 136
>gi|20807741|ref|NP_622912.1| transcription antitermination protein NusB [Thermoanaerobacter
tengcongensis MB4]
gi|22095940|sp|Q8RAD1|NUSB_THETN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|20516294|gb|AAM24516.1| Transcription termination factor [Thermoanaerobacter tengcongensis
MB4]
Length = 140
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ D+ +I + E E+ +
Sbjct: 2 NRTEAREWVVKMLYQYDVSKLPLEKIFENF------------YEEHDPGEQKEYIEGTVR 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID I ++ W R+ I +ILR + E++ ++PV + I+E V IA
Sbjct: 50 GTVEHLEEIDREIEKY-SKDWPLYRMPRIDLAILRCSMYEMLY-GNIPVSISINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D P FIN +L R++ ++
Sbjct: 108 KKYSTDDSPSFINGLLGAFVREKGLEE 134
>gi|329116212|ref|ZP_08244929.1| transcription antitermination factor NusB [Streptococcus parauberis
NCFD 2020]
gi|326906617|gb|EGE53531.1| transcription antitermination factor NusB [Streptococcus parauberis
NCFD 2020]
Length = 143
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ +++ G E +F D + VE + ++
Sbjct: 7 NSRRDLRERAFQALFNMELGG-------EFLEASQFAYDYDKIVEEGEKSDVPAFLLNLV 59
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GV D K +D LI+ L WS RL + ++LR G+ E+ P V ++E + I
Sbjct: 60 NGVNDHKVELDQLITENLKTGWSIERLTLSDKTMLRLGLYEIKYFEETPDRVALNEIIEI 119
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + KFIN +L + +
Sbjct: 120 AKKYSDETSAKFINGLLSQFVK 141
>gi|331701511|ref|YP_004398470.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
gi|329128854|gb|AEB73407.1| NusB antitermination factor [Lactobacillus buchneri NRRL B-30929]
Length = 137
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 11/146 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A Q L+ ++ + + + ++ Y E+
Sbjct: 1 MELTRHQIREIAFQTLFALNTNDQT--DWKDFF---------QVLTSGKYGDDYPEYLHQ 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+I GV++ K ID I L WS R+ IL + E++ +P +V I+E +
Sbjct: 50 LISGVLEHKSEIDHTIEKYLASSWSLERIARTDLIILEIAIYEMVYVDDMPAKVSINEAI 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A F KF+N +L +
Sbjct: 110 ELAKKFSDDRSRKFVNGILSHALEEL 135
>gi|56420932|ref|YP_148250.1| transcription antitermination protein NusB [Geobacillus
kaustophilus HTA426]
gi|297529436|ref|YP_003670711.1| NusB antitermination factor [Geobacillus sp. C56-T3]
gi|81557844|sp|Q5KXA4|NUSB_GEOKA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|56380774|dbj|BAD76682.1| transcription termination factor [Geobacillus kaustophilus HTA426]
gi|297252688|gb|ADI26134.1| NusB antitermination factor [Geobacillus sp. C56-T3]
Length = 130
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ E + + +D + R ++
Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEALHNV--------------TGGGDID-PFLRQLVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A
Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124
>gi|330838907|ref|YP_004413487.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
gi|329746671|gb|AEC00028.1| NusB antitermination factor [Selenomonas sputigena ATCC 35185]
Length = 140
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+Q L+Q+++ +E SE + D ++ V D + ++
Sbjct: 2 SRRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVR 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133
G + ID I++ T W R+ + +I+R + E+ V V + I+E V +
Sbjct: 60 GTREHLAAIDEEIAAS-THDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVEL 118
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A F D +++N +L ++R
Sbjct: 119 AKKFGTDDSSRYVNGILGGLAR 140
>gi|261417744|ref|YP_003251426.1| transcription antitermination protein NusB [Geobacillus sp.
Y412MC61]
gi|319767444|ref|YP_004132945.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
gi|261374201|gb|ACX76944.1| NusB antitermination factor [Geobacillus sp. Y412MC61]
gi|317112310|gb|ADU94802.1| NusB antitermination factor [Geobacillus sp. Y412MC52]
Length = 130
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ E + + +D + R ++
Sbjct: 2 KRHEAREKALQALFQIDVGRIPPDEALHNV--------------TGGGDID-PFLRQLVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ ++ ID L+ + L EKW+ R+ + +ILR E+ VPV V + E V +A
Sbjct: 47 GVVEHQEEIDELLRANL-EKWTLERVANVDRAILRMATYEMKYADDVPVSVSLDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F F+N VL KV
Sbjct: 106 KTFGDWKSGSFVNGVLSKV 124
>gi|238765184|ref|ZP_04626116.1| N utilization substance protein B [Yersinia kristensenii ATCC
33638]
gi|238696618|gb|EEP89403.1| N utilization substance protein B [Yersinia kristensenii ATCC
33638]
Length = 138
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPVLSRQ--LEELGQVERAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAA 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ ++
Sbjct: 118 DSHKFVNGVLDKVAPMVRKRK 138
>gi|78188395|ref|YP_378733.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
gi|119390755|sp|Q3ATI5|NUSB_CHLCH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78170594|gb|ABB27690.1| NusB antitermination factor [Chlorobium chlorochromatii CaD3]
Length = 169
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ G + E T AD ++F +
Sbjct: 1 MKTYRRQIREKILQALYTVELRGITLDEAAGWLLTEEILADPNAM----------KFFNL 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + ++ ID I+ T W SR+ +I +I+R + E++ C +P +V I+E +
Sbjct: 51 LLSSIKAHREEIDNYIAQQ-TFNWDMSRIAIIDKNIIRMALTEILYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + K + +
Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAIFNKLKTE 139
>gi|269926747|ref|YP_003323370.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
gi|269790407|gb|ACZ42548.1| NusB antitermination factor [Thermobaculum terrenum ATCC BAA-798]
Length = 153
Score = 99.1 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R AR A+Q LY+ + EI+ E + +
Sbjct: 10 QQRHQARALAMQVLYEAETTRKQPYEILQRRRN-----------EENIPEQVHAYASDLA 58
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV ++ D LI+ T W+ ++ + +ILR V E++ + VP+ I+E V +
Sbjct: 59 IGVWQNRKEYDSLITRF-TPTWTIDQMAKVDRNILRIAVHEMLRRNDVPIAAAINEAVEL 117
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
A ++ PKF+N VL ++ E SG ++ + +
Sbjct: 118 AKEYGAEASPKFVNGVLGAIADAIESS-SGGIAPVRE 153
>gi|331269441|ref|YP_004395933.1| transcription antitermination factor NusB [Clostridium botulinum
BKT015925]
gi|329125991|gb|AEB75936.1| transcription antitermination factor NusB [Clostridium botulinum
BKT015925]
Length = 135
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L+++ I EII ++ ++ VD E+ II
Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEIIHNFKEN---------TDTNLKDVDFEYINKIIQ 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + ID I LT+ W +RL + +ILR E++ VP +V ++E + +A
Sbjct: 53 GVQDNIEDIDSKIEENLTK-WKLNRLSKMDLTILRISTYEIMFMEDVPEKVAVNEGIELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ + P FIN VL + +
Sbjct: 112 KKYSAENSPAFINGVLGNMIK 132
>gi|257055582|ref|YP_003133414.1| transcription antitermination factor NusB [Saccharomonospora
viridis DSM 43017]
gi|256585454|gb|ACU96587.1| transcription antitermination factor NusB [Saccharomonospora
viridis DSM 43017]
Length = 153
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 1 MTIQD--NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M + ++ + + R +R AV+ LY+ + ++SE
Sbjct: 1 MNNESRASRTARRGTFSRRASRQRAVELLYEAALRKTDPATLMSERL------------G 48
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
S + ++ ++ GV + ++ ID L++ + WS R+ + ++LR G+ EL+
Sbjct: 49 SPDVDPISDYTITLVEGVSENRERIDELLAEY-AQGWSLERMPPVDLAVLRVGLYELLWL 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
VP V I E V IA D P+F+N VL ++
Sbjct: 108 DDVPDPVAIDEAVGIAKQLSTDDSPRFVNGVLGRI 142
>gi|288906084|ref|YP_003431306.1| antitermination protein NusB [Streptococcus gallolyticus UCN34]
gi|306832123|ref|ZP_07465277.1| transcription antitermination factor NusB [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325979049|ref|YP_004288765.1| transcription antitermination factor NusB [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288732810|emb|CBI14386.1| putative antitermination protein NusB [Streptococcus gallolyticus
UCN34]
gi|304425562|gb|EFM28680.1| transcription antitermination factor NusB [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178977|emb|CBZ49021.1| transcription antitermination factor NusB [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 142
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R R A QAL+ ++ G +F + +E + +
Sbjct: 6 TNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLLNL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV D + ID I + L WS RL + ++LR G+ E+ P V ++E +
Sbjct: 59 VKGVQDFQSEIDQQIETHLKSGWSLERLTLTDRTLLRLGLYEIKYFEETPGRVAVNEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KF+N +L
Sbjct: 119 IAKKYSDDTSAKFVNGLL 136
>gi|290474696|ref|YP_003467576.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
gi|289174009|emb|CBJ80796.1| transcription termination; L factor [Xenorhabdus bovienii SS-2004]
Length = 138
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSKNDIADVEFQFLS-----------EQDVTGVDITYFRELLTGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 AKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117
Query: 141 DEPKFINAVLDK---VSRKEE 158
D KF+N VLDK +RK++
Sbjct: 118 DSHKFVNGVLDKAGPAARKKK 138
>gi|284991570|ref|YP_003410124.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
gi|284064815|gb|ADB75753.1| NusB antitermination factor [Geodermatophilus obscurus DSM 43160]
Length = 135
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 14/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV LY+ D+ G E++ E + +
Sbjct: 1 MAARSKARKRAVDVLYEADLRGSDPLELLRERVALA-------------SPPIPDHAVRL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + +D LI WS RL + +ILR V EL+ VP V+I E V
Sbjct: 48 VEGVAEHAARVDELIDRH-ARGWSIHRLPDVDRAILRMAVFELLWVDDVPDAVVIDEAVE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P ++N VL V
Sbjct: 107 LARSLSTDDSPAYVNGVLGGVL 128
>gi|254383581|ref|ZP_04998931.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
gi|194342476|gb|EDX23442.1| transcription antitermination protein NusB [Streptomyces sp. Mg1]
Length = 144
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G ++++++ + D + V + +
Sbjct: 1 MAARSNARKRAFQILFEADQRGVPVRDVLADWIRHARSDDRQPPVS--------AFTMDL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G D+ ID LI W R+ ++ +I+R G ELI P V I E V
Sbjct: 53 VEGYADKVNRIDDLII-TYAVDWDLDRMPVVDRNIVRLGAYELIWVDDTPDAVAIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L +
Sbjct: 112 LAKEFSTDESPSFVNGLLARF 132
>gi|226329105|ref|ZP_03804623.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
gi|225202291|gb|EEG84645.1| hypothetical protein PROPEN_03008 [Proteus penneri ATCC 35198]
Length = 137
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G ++ E+ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D + L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 TRLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|256391589|ref|YP_003113153.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
gi|256357815|gb|ACU71312.1| NusB antitermination factor [Catenulispora acidiphila DSM 44928]
Length = 145
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 6/150 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR A++ L++ D+ G ++++ + E + +
Sbjct: 1 MASPRSKARQRALEILFEADLRGVDPRTVLADTQARIRAQGPEGTI-----PQVQPYAAT 55
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV++ ID L+ +E W+ R+ + ++LR GV EL+ VP V++ E V
Sbjct: 56 LVEGVLEHVDKIDDLLDEH-SEGWALDRMPTVDRNVLRIGVYELLWQSDVPDAVVLDEAV 114
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + P+F+N +L +++ ++ +
Sbjct: 115 SLARLMSTDESPQFVNGLLARIAEVKDSLK 144
>gi|227530526|ref|ZP_03960575.1| transcription antitermination protein NusB [Lactobacillus vaginalis
ATCC 49540]
gi|227349532|gb|EEJ39823.1| transcription antitermination protein NusB [Lactobacillus vaginalis
ATCC 49540]
Length = 136
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R R A Q L+ + T+I ++ + +
Sbjct: 1 MMPNRHAIREEAFQILFAKQSNPDATLTDIYESLPSHA--------------DKIPAYLQ 46
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + ++ +D I+ L W +RL ILR + E+ VP V I+E
Sbjct: 47 TLVEGVSEHQEKLDEQITQLLASGWEINRLAQTDLVILRLALYEIQFVDEVPTVVAINEA 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +A + KFIN L K R+ E
Sbjct: 107 LELAKTYSNDKSRKFINGALGKFERQLESN 136
>gi|291532856|emb|CBL05969.1| transcription antitermination factor NusB [Megamonas hypermegale
ART12/1]
Length = 131
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+Q+L+Q+D C I ++ D ++ R+++
Sbjct: 2 SRRQAREIALQSLFQLDFNECEVDSAIENVLSH-----------KKLHEADCDFVRILVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133
G + + ID +I+ ++ W R+ I +I+R + E+ + + I+E V +
Sbjct: 51 GTRENLESIDKMIAEK-SKDWKIERMSGIDRNIVRLAIFEMKFSSDKLVPNIAINEAVEL 109
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A F D +F+N +L + +
Sbjct: 110 AKKFGTDDSARFVNGILGSMIK 131
>gi|225023290|ref|ZP_03712482.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
23834]
gi|224943935|gb|EEG25144.1| hypothetical protein EIKCOROL_00142 [Eikenella corrodens ATCC
23834]
Length = 145
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 13/155 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K R AR AVQALYQ + E+ + A D E
Sbjct: 1 MKPKNRTPRRRAREFAVQALYQAALNQLPDAEVAKNIRENEYFA-----------KADNE 49
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
F I GV +++ + +I L L I C++L A EL + P VII
Sbjct: 50 LFTAIFFGVQAKRRELMQIIRPLLDRDE--KDLSPIECAVLLAAAFELRDMPETPYPVII 107
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+E + + F D KF+N +LDK++ +
Sbjct: 108 NEAIEVTKTFGGIDGHKFVNGILDKLAAELRPNDP 142
>gi|54025601|ref|YP_119843.1| transcription antitermination protein NusB [Nocardia farcinica IFM
10152]
gi|81602600|sp|Q5YTL2|NUSB_NOCFA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54017109|dbj|BAD58479.1| putative transcription termination factor [Nocardia farcinica IFM
10152]
Length = 169
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 11/156 (7%)
Query: 1 MTIQ--DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q D K K R AR AV L++ + ++++E +L
Sbjct: 1 MAEQPADKKSTFKKLGARHKARRRAVDLLFEAEARDVDAADLLTER--------ADLATR 52
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + R ++ GV D + +D I S L + W+ SRL + +ILR V EL
Sbjct: 53 DQSVAPLHAYTRTLVEGVADELERVDGTIESYL-QDWTLSRLPAVDRAILRVAVWELFHA 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP V + E V +A + D P F+N VL +V
Sbjct: 112 TDVPPVVAVDEAVELAKELSTDDSPSFVNGVLGQVV 147
>gi|309789561|ref|ZP_07684142.1| NusB antitermination factor [Oscillochloris trichoides DG6]
gi|308228297|gb|EFO81944.1| NusB antitermination factor [Oscillochloris trichoides DG6]
Length = 150
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R+AA+Q L+++D + V+ +
Sbjct: 1 MASLRHRVRIAALQVLFEVDATDHPIDVVYERRL-----------VDEELPAEGERFLNQ 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE--LIECHSVPVEVIISE 129
I+ G + + ++D +I W +++ + +ILR + E + E PV+ +I+E
Sbjct: 50 IVFGSWEHRSYLDGVIEEA-APNWPVTQMPGVDKAILRIAIFELLIDEVEQTPVKAVINE 108
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A F + +FIN VL V +
Sbjct: 109 AVELAKHFGSDNSSRFINGVLGTVVNRYR 137
>gi|310816559|ref|YP_003964523.1| putative N utilization substance protein B [Ketogulonicigenium
vulgare Y25]
gi|308755294|gb|ADO43223.1| putative N utilization substance protein B [Ketogulonicigenium
vulgare Y25]
Length = 147
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R ARL AVQAL+Q++ G + T + E+E +RF A + + D+ FR ++
Sbjct: 2 RSAARLYAVQALFQMEAAGVTVTRVTREFEDFRFGASIDG---EELVEGDVTLFRTLMQD 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID + L KW +R+D L ++ RA E P +V+I E++ IA
Sbjct: 59 AVNNQAQIDQMTDRALVSKWPIARIDPTLRALFRAAGAEF-MLKETPAKVVIVEFMDIAS 117
Query: 136 DFF-YGDEPKFINAVLDKVSRKEEIKRSGC 164
F EPKF+NAVLD ++R+
Sbjct: 118 AFSADPKEPKFVNAVLDHMAREANPADFAE 147
>gi|325474207|gb|EGC77395.1| N utilization substance protein B [Treponema denticola F0402]
Length = 136
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R+ A QAL D+ G ++ + + + + + + YL + ++
Sbjct: 1 MSVGRRRGRILAFQALVAWDVGGA----VLDDLLNFSWQNENSIKDPNSYL-----FPKM 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G ++ ID +I L W RL+ + +ILR V LI P ++I E +
Sbjct: 52 MVLGTIENITEIDKVIQENLDN-WVIDRLNSVDKAILRLSVYSLIYQKDTPPPIVIDEAI 110
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A DF D KF+NAVLD +
Sbjct: 111 NLAKDFGTDDSYKFVNAVLDSI 132
>gi|313889626|ref|ZP_07823269.1| transcription antitermination factor NusB [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121923|gb|EFR45019.1| transcription antitermination factor NusB [Streptococcus
pseudoporcinus SPIN 20026]
Length = 143
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ ++ G E+ RF D + + + + ++
Sbjct: 7 NSRRDLRERAFQALFNMEHGG-------DFLESSRFAYDYDKVSDQDHPLDVPAFLLTLV 59
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GV + K+ +D +I L + WS RL + ++LR G+ E+ P V ++E + I
Sbjct: 60 NGVNNHKEELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A + KFIN +L + +
Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143
>gi|153208973|ref|ZP_01947179.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
Goat Q177']
gi|165924151|ref|ZP_02219983.1| transcription antitermination factor NusB [Coxiella burnetii RSA
334]
gi|212219014|ref|YP_002305801.1| transcription antitermination protein NusB [Coxiella burnetii
CbuK_Q154]
gi|238055349|sp|B6J8Q7|NUSB_COXB1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|120575573|gb|EAX32197.1| transcription antitermination factor NusB [Coxiella burnetii 'MSU
Goat Q177']
gi|165916410|gb|EDR35014.1| transcription antitermination factor NusB [Coxiella burnetii RSA
334]
gi|212013276|gb|ACJ20656.1| utilization substance protein B [Coxiella burnetii CbuK_Q154]
Length = 138
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 13/147 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR A+QALYQ +IS++ E ++ +F+
Sbjct: 2 INKTRHNARRYALQALYQWFFCETKPDALISQF-----------MEEHDLSDTEVAYFKE 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G + ID L+++ L S L+ + S+LR + EL+ VP +V+I E +
Sbjct: 51 VVTGTIQHVAIIDELMTAHLDR--KISALNPVELSVLRLSIYELLHRKEVPYKVVIDEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +F K++NA+LD +S +
Sbjct: 109 ELVKEFGAEAGHKYVNAILDVLSSEIR 135
>gi|167628417|ref|YP_001678916.1| transcription antitermination factor nusb [Heliobacterium
modesticaldum Ice1]
gi|238687883|sp|B0TEI6|NUSB_HELMI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|167591157|gb|ABZ82905.1| transcription antitermination factor nusb [Heliobacterium
modesticaldum Ice1]
Length = 206
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A+Q L+ D+ + E + R ++
Sbjct: 2 SRRQGRETALQTLFMADVGRMEPAYALQY-----------ASEEFGISEAAAAFARELVE 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ++ ID I ++W+ R+ + ++LR + E++ +P+ I+E + +A
Sbjct: 51 GAVANRETIDGNIRRL-AKEWNLERMPHVDRNLLRVAIFEMLFREDIPLNAAINEAIELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+ + KF+N +L +++R+ R SA
Sbjct: 110 KIYANEESAKFVNGILGQLARELREARGEKTSAQ 143
>gi|320160865|ref|YP_004174089.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
gi|319994718|dbj|BAJ63489.1| antitermination protein NusB [Anaerolinea thermophila UNI-1]
Length = 155
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A++ALY+ID+ +++ E ++ ++ R I
Sbjct: 1 MKLRTRARAVALEALYEIDLTNHLPGDVLE-----------ERIKDAKLQDELADFAREI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +D+ I+ +W ++ +I +ILR + E PV+V I+E V
Sbjct: 50 VMGVLPITHQLDVQIAKH-APEWPLDQVAVIDRNILRIALWEFAVGQCTPVKVAINEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS-RKEEIK 160
+A + +F+N VL ++ R+ EIK
Sbjct: 109 LAKKYGSDSSARFVNGVLGSLADRETEIK 137
>gi|15609670|ref|NP_217049.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis H37Rv]
gi|148662371|ref|YP_001283894.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis H37Ra]
gi|148823728|ref|YP_001288482.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis F11]
gi|167967008|ref|ZP_02549285.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis H37Ra]
gi|215404474|ref|ZP_03416655.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis 02_1987]
gi|215412305|ref|ZP_03421065.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis 94_M4241A]
gi|215446785|ref|ZP_03433537.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T85]
gi|218754265|ref|ZP_03533061.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis GM 1503]
gi|253798387|ref|YP_003031388.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
KZN 1435]
gi|254232655|ref|ZP_04925982.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis C]
gi|254366739|ref|ZP_04982782.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|254551582|ref|ZP_05142029.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289553678|ref|ZP_06442888.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
KZN 605]
gi|289746319|ref|ZP_06505697.1| N utilization substance protein nusB [Mycobacterium tuberculosis
02_1987]
gi|289758663|ref|ZP_06518041.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T85]
gi|289762701|ref|ZP_06522079.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis GM 1503]
gi|294994358|ref|ZP_06800049.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis 210]
gi|297635143|ref|ZP_06952923.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis KZN 4207]
gi|297732134|ref|ZP_06961252.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis KZN R506]
gi|298526007|ref|ZP_07013416.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis 94_M4241A]
gi|306776807|ref|ZP_07415144.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu001]
gi|306780573|ref|ZP_07418910.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu002]
gi|306789935|ref|ZP_07428257.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu004]
gi|313659467|ref|ZP_07816347.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis KZN V2475]
gi|7387976|sp|P95020|NUSB_MYCTU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215701|sp|A5U5N2|NUSB_MYCTA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|8569494|pdb|1EYV|A Chain A, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
gi|8569495|pdb|1EYV|B Chain B, The Crystal Structure Of Nusb From Mycobacterium
Tuberculosis
gi|1781069|emb|CAB06175.1| N UTILIZATION SUBSTANCE PROTEIN NUSB (NUSB PROTEIN) [Mycobacterium
tuberculosis H37Rv]
gi|124601714|gb|EAY60724.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis C]
gi|134152250|gb|EBA44295.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|148506523|gb|ABQ74332.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis H37Ra]
gi|148722255|gb|ABR06880.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
F11]
gi|253319890|gb|ACT24493.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
KZN 1435]
gi|289438310|gb|EFD20803.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
KZN 605]
gi|289686847|gb|EFD54335.1| N utilization substance protein nusB [Mycobacterium tuberculosis
02_1987]
gi|289710207|gb|EFD74223.1| N utilization substance protein nusB (nusb protein) [Mycobacterium
tuberculosis GM 1503]
gi|289714227|gb|EFD78239.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis T85]
gi|298495801|gb|EFI31095.1| transcription antitermination protein NusB [Mycobacterium
tuberculosis 94_M4241A]
gi|308214814|gb|EFO74213.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu001]
gi|308326587|gb|EFP15438.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu002]
gi|308333625|gb|EFP22476.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
SUMu004]
gi|323718889|gb|EGB28044.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
CDC1551A]
gi|326904148|gb|EGE51081.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
W-148]
gi|328458157|gb|AEB03580.1| N utilization substance protein B nusB [Mycobacterium tuberculosis
KZN 4207]
Length = 156
Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ ++ G S E++ +
Sbjct: 2 SDRKPVRGRHQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP-------- 53
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV + HID LI++ L W+ RL + +ILR V EL+ VP V++
Sbjct: 54 YTAAVARGVSEHAAHIDDLITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVV 112
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A + D P F+N VL +V
Sbjct: 113 DEAVQLAKELSTDDSPGFVNGVLGQV 138
>gi|332523180|ref|ZP_08399432.1| transcription antitermination factor NusB [Streptococcus porcinus
str. Jelinkova 176]
gi|332314444|gb|EGJ27429.1| transcription antitermination factor NusB [Streptococcus porcinus
str. Jelinkova 176]
Length = 143
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 7/144 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ ++ G E+ +F D + + + + ++
Sbjct: 7 NSRRDLRERAFQALFNMEHGG-------DFLESSQFAYDYDKVSDQDHPLDIPAFLLTLV 59
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GV + K +D +I L + WS RL + ++LR G+ E+ P V ++E + I
Sbjct: 60 NGVNNHKDELDAIIKENLKKGWSIERLTLSDRTMLRLGLYEIKYFDETPDRVALNEIIEI 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A + KFIN +L + +
Sbjct: 120 AKKYSDETSAKFINGLLSQFVKDN 143
>gi|322420503|ref|YP_004199726.1| NusB antitermination factor [Geobacter sp. M18]
gi|320126890|gb|ADW14450.1| NusB antitermination factor [Geobacter sp. M18]
Length = 145
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISE-YETYRFCADTELDVESVYLHVDLEWFRV 71
R R A+QALY D++ + +E++ D L S +
Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANTTLKRIFESFGEGEDPTLSANSKA----YAFASE 56
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E +
Sbjct: 57 LVNGVVTHLQEIDGRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAI 115
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A F D F+N +LD+++
Sbjct: 116 EVAKKFGADDSASFVNGILDEIA 138
>gi|145220268|ref|YP_001130977.1| NusB antitermination factor [Prosthecochloris vibrioformis DSM 265]
gi|189035896|sp|A4SG66|NUSB_PROVI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145206432|gb|ABP37475.1| NusB antitermination factor [Chlorobium phaeovibrioides DSM 265]
Length = 164
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ T AD + ++F +
Sbjct: 1 MKTYRRQIREKILQALYTLELRDTDIDSAAGWLLTPEILADPKAM----------KFFNL 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + + + ID I++ T W SR+ +I +ILR + EL+ C +P +V I+E +
Sbjct: 51 LLGNIKEHMEEIDRYIAAH-TFNWDMSRIAIIDKNILRMAMAELLYCDDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVS----RKEEIKRSGC 164
IA F KF+N +LD + + +I ++G
Sbjct: 110 EIAKKFSSTDKSSKFVNGILDAIFNALKEEGKINKNGR 147
>gi|239939930|ref|ZP_04691867.1| transcription antitermination protein NusB [Streptomyces
roseosporus NRRL 15998]
gi|239986415|ref|ZP_04707079.1| transcription antitermination protein NusB [Streptomyces
roseosporus NRRL 11379]
gi|291443361|ref|ZP_06582751.1| transcription antitermination protein NusB [Streptomyces
roseosporus NRRL 15998]
gi|291346308|gb|EFE73212.1| transcription antitermination protein NusB [Streptomyces
roseosporus NRRL 15998]
Length = 143
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ + D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGASVQSVLADWVRHSRTDDRQPPVG--------EFTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI W R+ ++ +ILR G ELI P V+I E V
Sbjct: 53 VEGYAQYADRIDDLIV-TYAVDWEIDRMPVVDRNILRLGAYELIWMDETPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPSFVNGLLARF 132
>gi|145224333|ref|YP_001135011.1| transcription antitermination protein NusB [Mycobacterium gilvum
PYR-GCK]
gi|315444665|ref|YP_004077544.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
gi|189035893|sp|A4TBX3|NUSB_MYCGI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145216819|gb|ABP46223.1| NusB antitermination factor [Mycobacterium gilvum PYR-GCK]
gi|315262968|gb|ADT99709.1| NusB antitermination factor [Mycobacterium sp. Spyr1]
Length = 164
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
D K R AR AV L++ + G + E+ ++ +
Sbjct: 2 PDRKGDRGRHQARKRAVDLLFEAEARGITAAEVAEARNALADNGADDIAPLNP------- 54
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + GV D HID LIS+ L + W+ RL + ++LR V EL+ VP V +
Sbjct: 55 YTVTVARGVTDHAAHIDDLISAHL-QGWTLDRLPAVDRAVLRVAVWELLHAVDVPEPVAV 113
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKV 153
E V +A D P F+N VL +V
Sbjct: 114 DEAVELAKQLSTDDSPGFVNGVLGQV 139
>gi|290961848|ref|YP_003493030.1| NusB family protein [Streptomyces scabiei 87.22]
gi|260651374|emb|CBG74496.1| putative NusB-family protein [Streptomyces scabiei 87.22]
Length = 144
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHAHNDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V
Sbjct: 53 VEGYSEHARRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L ++
Sbjct: 112 LAKEFSTDDSPSFVNGLLGRL 132
>gi|34497846|ref|NP_902061.1| transcription antitermination protein NusB [Chromobacterium
violaceum ATCC 12472]
gi|39931749|sp|Q7NVF2|NUSB_CHRVO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|34103702|gb|AAQ60063.1| N utilization substance protein B [Chromobacterium violaceum ATCC
12472]
Length = 149
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQ +Y+ ++ +I + L + D FR
Sbjct: 1 MKTARRRAREFAVQGIYEWELNPDRPASLI----------EKHLRENEYFAKADEALFRS 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ + + + + + ++L LEL + P VII+E +
Sbjct: 51 ILYGVLKDVELLSAQVGRYYERAED--EVSPVERAVLLMAALELTQSPETPYPVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I F D KF+N VLDK++ +
Sbjct: 109 EITKTFGGTDGHKFVNGVLDKLAAEVRGDE 138
>gi|268315608|ref|YP_003289327.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
gi|262333142|gb|ACY46939.1| NusB antitermination factor [Rhodothermus marinus DSM 4252]
Length = 165
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 15/156 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
H R R +QALY ++ + +I D E L + +
Sbjct: 1 MHSRREVRERVLQALYAYEVGHDTAEHVIDTVLRPALKDDREA----------LRFATQL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++ + D LI+ + W +R+ +I +LR + EL+ +P +V I+E +
Sbjct: 51 FLRTINYSEEADRLIADHVKN-WDLTRIALIDRLLLRMAICELLAFEDIPPKVSINEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKV----SRKEEIKRSGC 164
+A + +F+N VLD V R+ +K+SG
Sbjct: 110 LAKKYSTEKSGQFVNGVLDAVVLDLQRQGRLKKSGR 145
>gi|148655139|ref|YP_001275344.1| NusB antitermination factor [Roseiflexus sp. RS-1]
gi|166215713|sp|A5URZ1|NUSB_ROSS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|148567249|gb|ABQ89394.1| NusB antitermination factor [Roseiflexus sp. RS-1]
Length = 142
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A+Q L+++D S ++++ E + R
Sbjct: 1 MASLRRRVRAIALQILFELDATDHSPDQVVARRLE-----------EERLPPEGERFLRR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE--LIECHSVPVEVIISE 129
++ G + ++D +I W S++ + +ILR + E + E P++ II+E
Sbjct: 50 LVFGAWEHASYLDRIIEET-APNWPVSQMPGVDKAILRIALFEALIDEEEKTPLKAIINE 108
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V +A + + +F+N VL V + +R G
Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERRKG 142
>gi|317128425|ref|YP_004094707.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
gi|315473373|gb|ADU29976.1| NusB antitermination factor [Bacillus cellulosilyticus DSM 2522]
Length = 132
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR+ AVQ+LYQI++ G S + I +D + ++
Sbjct: 2 NRRVARVRAVQSLYQIEMTGVSPDQAIDTVLENGEISD--------------SFLSQLVE 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ ID L+ S L W+ SR+ + +ILR E+ +P+ V I+E + IA
Sbjct: 48 GTVEHLHEIDELLISALKN-WALSRISRVDRAILRMATYEMKCLDDIPMNVSINEAIDIA 106
Query: 135 HDF-FYGDEPKFINAVLDKVSRKE 157
F + KF+N +L ++ K
Sbjct: 107 KGFTGEEESGKFVNGILSNIATKL 130
>gi|261346385|ref|ZP_05974029.1| transcription antitermination factor NusB [Providencia rustigianii
DSM 4541]
gi|282565703|gb|EFB71238.1| transcription antitermination factor NusB [Providencia rustigianii
DSM 4541]
Length = 138
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G E+ E+ E VD+ +FR +I G+
Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFLA-----------EQDMSDVDVNYFRELISGIASNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+S L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 TKLDQLMSPYLSRQ--LEELGQVEKAILRVSMYELSYRQDVPFKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|85058631|ref|YP_454333.1| transcription antitermination protein NusB [Sodalis glossinidius
str. 'morsitans']
gi|119390825|sp|Q2NV97|NUSB_SODGM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|84779151|dbj|BAE73928.1| N utilization substance protein B [Sodalis glossinidius str.
'morsitans']
Length = 139
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + +I ++ E VD+ +FR + G
Sbjct: 11 ECAVQALYSWQLSHNDIADIEVQFLA-----------EQDTSDVDVAYFRDLYAGAATNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
Q +D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 QELDKLMAPYLSRQ--LEELGHVERAVLRIALFELSKRQDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
+ KFIN VLDKV+ + R
Sbjct: 118 ESHKFINGVLDKVAPQIRPNR 138
>gi|28211246|ref|NP_782190.1| transcription antitermination protein NusB [Clostridium tetani E88]
gi|32171611|sp|Q894G5|NUSB_CLOTE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28203686|gb|AAO36127.1| N utilization substance protein B [Clostridium tetani E88]
Length = 153
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 11/152 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT----------ELDVESVYLHV 64
+R +R +Q L+++ I + EII+ + + + V
Sbjct: 2 KRKKSREMTMQLLFEMMIKKENYVEIINTLKEALTEEEDINSILGEKKEMDEERIDLDEV 61
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
DLE+ + GV + + +D I L W+ +RL + +ILR E++ + VP
Sbjct: 62 DLEYLIHTLKGVEENSKVLDEHIEKYLKN-WTLNRLAKVDLAILRLCSYEILFSNEVPDN 120
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
V I+E V +A + P FINAVLDK++++
Sbjct: 121 VAINEGVELAKKYGDDKSPAFINAVLDKIAKQ 152
>gi|197283996|ref|YP_002149868.1| transcription antitermination protein NusB [Proteus mirabilis
HI4320]
gi|227358135|ref|ZP_03842476.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
gi|238693150|sp|B4EU20|NUSB_PROMH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|194681483|emb|CAR40329.1| N utilization substance protein B [Proteus mirabilis HI4320]
gi|227161471|gb|EEI46508.1| N utilization substance protein B [Proteus mirabilis ATCC 29906]
Length = 137
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G ++ E+ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSGNDIADVELEFLS-----------EQDTQGVDIAYFRELLVGVAINA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D + L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 ARLDKAMEPYLSRQ--LEELGQVEKAILRLAMFELSFREDVPYKVAINEAIELAKVFGAD 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|125973090|ref|YP_001037000.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|256004593|ref|ZP_05429571.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281417285|ref|ZP_06248305.1| sun protein [Clostridium thermocellum JW20]
gi|125713315|gb|ABN51807.1| sun protein [Clostridium thermocellum ATCC 27405]
gi|255991465|gb|EEU01569.1| sun protein [Clostridium thermocellum DSM 2360]
gi|281408687|gb|EFB38945.1| sun protein [Clostridium thermocellum JW20]
gi|316940689|gb|ADU74723.1| sun protein [Clostridium thermocellum DSM 1313]
Length = 455
Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + + R A++ LY DI Y + + + +D +
Sbjct: 1 MDMRTKVDKVRETALKILY--DINEKGA---------YSNISLNKYLNGQEFESIDRAFI 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++G + + ID LI + ++ + +ILR G+ +LI +P +E
Sbjct: 50 TDIVYGTLKWQYTIDYLIEKFSSV--KIKKISPWIFNILRMGIYQLIYTDKIPFFAACNE 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A + + K++NAVL ++R +E
Sbjct: 108 SVKLAAKYGHAASSKYVNAVLRNIARNKE 136
>gi|212709167|ref|ZP_03317295.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
30120]
gi|212688079|gb|EEB47607.1| hypothetical protein PROVALCAL_00200 [Providencia alcalifaciens DSM
30120]
Length = 138
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + G E+ E+ E VD+ +FR +I G+ +
Sbjct: 11 ECAVQAIYSWQLSGNPIAEVEYEFIA-----------EQDMSDVDVNYFRELISGIANNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L+S L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 TKLDQLMSPYLSRQ--LEELGQVEKAILRVAMYELSYRQDVPFKVAINEGIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVS 154
D KF+N VLDK +
Sbjct: 118 DSHKFVNGVLDKAA 131
>gi|15604037|ref|NP_220552.1| transcription antitermination protein NusB [Rickettsia prowazekii
str. Madrid E]
gi|3860728|emb|CAA14629.1| N UTILIZATION SUBSTANCE PROTEIN B (nusB) [Rickettsia prowazekii]
Length = 174
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+++ IAR+AAVQALYQ I +I+ ++ ++ + +
Sbjct: 19 SMSTNKINKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLS 78
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + ++L ++LR + EL+ C + P +V
Sbjct: 79 ISHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKV 138
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+I+EY IA+D E F+N++LDK++++
Sbjct: 139 VINEYTDIANDLLNEHEIGFVNSILDKIAQENN 171
>gi|238795564|ref|ZP_04639079.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
gi|238720683|gb|EEQ12484.1| N utilization substance protein B [Yersinia mollaretii ATCC 43969]
Length = 138
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + ++ ++ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSKNDIADVELQFLS-----------EQDVKDVDIAYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 ASLDALMAPFLSRQ--LEELGQVERAVLRIALFELSKREDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDKV+ ++
Sbjct: 118 DSHKFVNGVLDKVAPTVRKRK 138
>gi|325981170|ref|YP_004293572.1| NusB antitermination factor [Nitrosomonas sp. AL212]
gi|325530689|gb|ADZ25410.1| NusB antitermination factor [Nitrosomonas sp. AL212]
Length = 166
Score = 98.3 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
KK K RR IAR +Q +YQ G +T I + +L +
Sbjct: 9 NSPTEKKAEKYKSRRRIAREFVLQGIYQWRTAGGTTNFI-----------EQQLRESEEF 57
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
HVD + F ++ G + + ++ +I CL S L + +IL ELI +
Sbjct: 58 RHVDEKHFTHVLQGALQQVDELEKIIRPCLDR--SLDELSPVEFAILLLSTFELIHHPEI 115
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P I++E + +A + D K++N VLDK++ +
Sbjct: 116 PYRAILNEAIELARTYGGSDGHKYVNGVLDKLAAQLRSIE 155
>gi|218549924|ref|YP_002383715.1| transcription antitermination protein NusB [Escherichia fergusonii
ATCC 35469]
gi|226738904|sp|B7LMH1|NUSB_ESCF3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|218357465|emb|CAQ90104.1| transcription antitermination protein [Escherichia fergusonii ATCC
35469]
gi|324114635|gb|EGC08603.1| transcription antitermination protein NusB [Escherichia fergusonii
B253]
gi|325498301|gb|EGC96160.1| transcription antitermination protein NusB [Escherichia fergusonii
ECD227]
Length = 139
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV
Sbjct: 11 ECAVQALYSWQLSRNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATNT 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++D L+ L+ L + ++LR + EL + VP +V I+E + +A F
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALFELSKRSDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPVIRPNK 138
>gi|300087424|ref|YP_003757946.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527157|gb|ADJ25625.1| NusB antitermination factor [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 136
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RR AR+ A+++LY++D+ G ++I + + I
Sbjct: 1 MPRRHQARIVALKSLYEVDLTGHDPDKVIERRLLFA-----------ELGPELETLAQSI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ++ D LI + +L + +ILR + E+I + VPV V I+E V
Sbjct: 50 LAGTLAAREEADSLIYRL-APTYPVDQLAPVDRNILRLAIYEIIHDNKVPVRVAINEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A +F KFIN VL V+
Sbjct: 109 LAKEFGSDGSAKFINGVLSSVA 130
>gi|226941305|ref|YP_002796379.1| transcription antitermination protein NusB [Laribacter
hongkongensis HLHK9]
gi|254772644|sp|C1DB31|NUSB_LARHH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226716232|gb|ACO75370.1| NusB [Laribacter hongkongensis HLHK9]
Length = 165
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 13/154 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR AVQ +YQ + + I + D FR
Sbjct: 1 MKTPRRRAREFAVQGIYQWQLNALTPATIEKNLRDN-----------EQFAKADEALFRT 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV++ I+ I+S + + ++L EL + P+ VII+E +
Sbjct: 50 LLYGVLNDPVRIESAIASHFERAP--EDVSPVERAVLLMAAFELTQQAETPLAVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
IA F + +F+N VLDK + + + V
Sbjct: 108 EIAKTFGGAEGHRFVNGVLDKYAAEVRPEEFEAV 141
>gi|241767422|ref|ZP_04765122.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
gi|241361805|gb|EER58071.1| NusB antitermination factor [Acidovorax delafieldii 2AN]
Length = 174
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 13/161 (8%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ + R AR A+QALYQ + G I D + +
Sbjct: 25 SNGVRKAASKSNRSRAREFALQALYQHIVGGNEAAAI-----------DAFTRDLAGFHK 73
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + ++HG +D +D LI+ L + + I + + GV E C VP
Sbjct: 74 ADAAHYDAVLHGCIDAAADLDALITPLLDR--KMAEISPIERATMWIGVYEFQHCLDVPW 131
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
V+++E + +A +F D K++NAVL+ ++ +
Sbjct: 132 RVVLNECIELAKEFGGTDGHKYVNAVLNGLAPRLRAAEVAA 172
>gi|300721781|ref|YP_003711059.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
19061]
gi|297628276|emb|CBJ88837.1| transcription termination; L factor [Xenorhabdus nematophila ATCC
19061]
Length = 138
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQA+Y + S +I E+ + E VD+ +FR ++ GV
Sbjct: 11 ECAVQAIYSWQLSNNSIADIELEFLS-----------EQDVTGVDITYFRELLSGVAVNA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D L++ L+ + L + +ILR + EL VP +V I+E + +A F
Sbjct: 60 TKLDALMAPYLSRQ--LEELGQVEKAILRVAMFELSFRDDVPYKVAINEGIELAKTFGAE 117
Query: 141 DEPKFINAVLDK---VSRKEE 158
D KF+N VLDK +R+++
Sbjct: 118 DSHKFVNGVLDKAGPAARRKK 138
>gi|218781155|ref|YP_002432473.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
gi|226738896|sp|B8FJ78|NUSB_DESAA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|218762539|gb|ACL05005.1| NusB antitermination factor [Desulfatibacillum alkenivorans AK-01]
Length = 143
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+Q+L+ +D E + + ++F +
Sbjct: 1 MGKRRRARELALQSLFYVDSTSAPPLEALDLF-----------CQNFPPPKDLAQFFYEL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV++ + ID LI + W R+ + +++R E + C VP V I+E +
Sbjct: 50 AKGVINNQDEIDRLI-EQHSNNWKLYRMSAVDLNLMRIAAYEFLFCPDVPRRVSINEAID 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS----RKEEIKR 161
I F + FIN +LD + ++E+ ++
Sbjct: 109 IGKRFGTAESGAFINGILDSIHLHLGKEEKAEK 141
>gi|67459511|ref|YP_247135.1| transcription antitermination protein NusB [Rickettsia felis
URRWXCal2]
gi|75536082|sp|Q4UKG1|NUSB_RICFE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|67005044|gb|AAY61970.1| N utilization substance protein B [Rickettsia felis URRWXCal2]
Length = 156
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ T E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTALPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LR + EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRVSICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+I+EY IA+D E F+N++LDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSILDKIAQENN 153
>gi|297566828|ref|YP_003685800.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
gi|296851277|gb|ADH64292.1| NusB antitermination factor [Meiothermus silvanus DSM 9946]
Length = 156
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD---LEWFRVI 72
R AR A + L++ + G S E + + +S +D LE+ R +
Sbjct: 2 RRKARELAFKVLFEHAVGGVSLEEAWEHVSQNHDPEEASSERDSYDDPLDQGGLEFARRL 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID ++ + + + WSF ++ ++LR E++ P +I V
Sbjct: 62 LEGYQRHESEIDEVLGNTI-QGWSFGQMAKTDLAVLRLAAYEMLY-EPTPYAPLIEVAVK 119
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
IA + D +F+N VL ++ ++ E
Sbjct: 120 IAKRYGGEDSGRFVNGVLGRLLKRIENAE 148
>gi|121997687|ref|YP_001002474.1| NusB antitermination factor [Halorhodospira halophila SL1]
gi|166215692|sp|A1WVG0|NUSB_HALHL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|121589092|gb|ABM61672.1| NusB antitermination factor [Halorhodospira halophila SL1]
Length = 155
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
RR AR VQALYQ + G S +I ++ + +D+ +FR +I
Sbjct: 8 KRRSRARSKLVQALYQYAVTGASAEDIERQFLA------------AGLGDIDVAYFRELI 55
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GV DR +D +S+ L +LD + SILR G EL E VP V+I E V +
Sbjct: 56 YGVTDRAAELDEQLSALLDR--PLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVEL 113
Query: 134 AHDFFYGDEPKFINAVLDKV 153
A F ++IN VLD+
Sbjct: 114 ARRFGADQSHRYINGVLDRF 133
>gi|311894818|dbj|BAJ27226.1| putative N utilization substance protein B homolog [Kitasatospora
setae KM-6054]
Length = 145
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR A Q L++ D G S +++++ + + E+
Sbjct: 1 MATARSKARTRAFQILFEADHRGVSPERVLADWIARARDPRPDEGI-----PQVAEYTMQ 55
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G + ID LI S W+ R+ + +++R G ELI P V++ E V
Sbjct: 56 LVEGYAQHARTIDDLI-STYAVGWTIDRMPIADRNVIRLGAYELIWEDGTPDAVVLDEAV 114
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
IA +F + P F+N +L +
Sbjct: 115 EIAKEFSTDESPAFVNGLLARF 136
>gi|258515792|ref|YP_003192014.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
gi|257779497|gb|ACV63391.1| NusB antitermination factor [Desulfotomaculum acetoxidans DSM 771]
Length = 156
Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A+Q L+QI++ G E +S +E+ R ++
Sbjct: 2 SRREGRQIAMQILFQIEVGGIDPEEAFKN-----------TVADSTCPVPIMEFARQLVF 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID +IS ++ W R+ + +++R + E+ ++P+ V +E + +A
Sbjct: 51 GTLGHLKEIDRVISEI-SKGWRLDRIANVDKTLIRMALYEIFYEDNIPLNVSANEAIELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F + KF+N ++ KV +K + +G
Sbjct: 110 KIFGGEESGKFVNGIIGKVVQKPDEYLTGGAEE 142
>gi|253687422|ref|YP_003016612.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259514866|sp|C6DB34|NUSB_PECCP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|251754000|gb|ACT12076.1| NusB antitermination factor [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 139
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPSVRKGK 138
>gi|25028292|ref|NP_738346.1| transcription antitermination protein NusB [Corynebacterium
efficiens YS-314]
gi|32171659|sp|Q8FT35|NUSB_COREF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|23493576|dbj|BAC18546.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 188
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ ++++ K R AR AV L++ + II + +T D +
Sbjct: 1 MSESRQGYKRHGARYKARRRAVDILFEAESRDVDPVAIIDDRKTLSNAVDP-------VV 53
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
E+ II+GV ID L+S + + W RL + ++LR E++ VP
Sbjct: 54 APVAEYTEAIINGVAVELDTIDDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVP 113
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI--KRSGCVSAIT 169
V + E V IA + +INA LD ++ K + +R+ A++
Sbjct: 114 VTTAVVEAVEIASQYSTDKAGAYINATLDNMASKVDELRERAANPGAVS 162
>gi|283853206|ref|ZP_06370458.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
gi|283571379|gb|EFC19387.1| NusB antitermination factor [Desulfovibrio sp. FW1012B]
Length = 167
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 9/161 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++KK R AR A + LY + E R A DV
Sbjct: 9 MPESEDKKP---VASRRKARKQAFECLYGLIF-----ESAADERSLRRVFARCPHDVMEG 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ GV ++ +D LI ++ W SR+ + +ILR + E++
Sbjct: 61 EDGAGQAFAWELVQGVWQNQRELDALIVKF-SKNWKLSRIAKVELTILRLALYEILHRSD 119
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P+ V ++E + +A + + FIN +LD V++ +
Sbjct: 120 IPLRVALNEAIELAKRYGDENSRNFINGILDAVAKAVDSGE 160
>gi|78044961|ref|YP_360813.1| transcription antitermination factor NusB [Carboxydothermus
hydrogenoformans Z-2901]
gi|119390754|sp|Q3AAM1|NUSB_CARHZ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|77997076|gb|ABB15975.1| transcription antitermination factor NusB [Carboxydothermus
hydrogenoformans Z-2901]
Length = 144
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A +AL+ +D T + + + + +++ R ++
Sbjct: 2 NRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKL------VDFSRELVR 55
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+++K+ +D +I W F RL + ++LR + E++ + + V I E V +A
Sbjct: 56 GVIEKKERLDEIIRRR-AIGWDFKRLAKVDKTLLRLALYEMLYRPDIDIPVSIDEAVELA 114
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + PKFIN +L V+ +
Sbjct: 115 KVYGEEESPKFINGILGYVAEHIDEFW 141
>gi|33519701|ref|NP_878533.1| transcription antitermination protein NusB [Candidatus Blochmannia
floridanus]
gi|39931819|sp|Q7VRI1|NUSB_BLOFL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|33504046|emb|CAD83307.1| transcription termination; L factor [Candidatus Blochmannia
floridanus]
Length = 138
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R ARL A+QALY + T I + + + ++ +F + G
Sbjct: 6 RRFARLCALQALYAWQLSKNDYTMISNY-----------VIKIQNIQNFNISYFLTLYIG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + ++ L+ L+ +D I S+L + EL +C VP +V+I+E + +A
Sbjct: 55 VIHTIKELNTLMIPYLSRG--LKAIDYIEYSVLLIALFELTQCCDVPYKVVINEAIELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
F KFIN VLDK+ ++
Sbjct: 113 IFGSEKSHKFINGVLDKIITEK 134
>gi|306834238|ref|ZP_07467357.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
700338]
gi|304423587|gb|EFM26734.1| transcription antitermination factor NusB [Streptococcus bovis ATCC
700338]
Length = 142
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R R A QAL+ ++ G +F + +E + +
Sbjct: 6 TNSRRDLRERAFQALFSLEFGGEYLAAA-------QFAYTYDKTIEEDDTIDVPVFLLNL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV D K ID I + L WS RL + ++LR G+ E+ P V ++E +
Sbjct: 59 VKGVQDLKFEIDQQIETHLKSGWSLERLTLTDRALLRLGLYEIKYFEETPGRVAVNEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KF+N +L
Sbjct: 119 IAKKYSDDTSAKFVNGLL 136
>gi|91788748|ref|YP_549700.1| transcription antitermination protein NusB [Polaromonas sp. JS666]
gi|119390795|sp|Q129J0|NUSB_POLSJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91697973|gb|ABE44802.1| NusB antitermination factor [Polaromonas sp. JS666]
Length = 187
Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K R AR A+QALYQ + I D + D
Sbjct: 40 KKAADKSARTRAREFALQALYQHLVGRNDADSI-----------DAFTRDLVGFHKADSA 88
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ +D +I+ L + + + ++L G E +C VP V+I
Sbjct: 89 HYDALLHGCIEGASALDAVITPLLDR--PMAEISPVEHAVLWMGAYEFRQCLDVPYRVVI 146
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+E + +A F D K++N VL K++
Sbjct: 147 NECIELAKAFGGTDGHKYVNGVLHKMAPSLRAAEVAA 183
>gi|260222860|emb|CBA32850.1| N utilization substance protein B homolog [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 177
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 13/154 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+Q LYQ + + +I D + + D
Sbjct: 27 RKAASKSNRTRAREFALQGLYQSLVGRNAVDDI-----------DPFTRDLAGFSKADAV 75
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
F ++HG + + +D LI+ S + I +I+ G E+ C VP V++
Sbjct: 76 HFDALLHGCVAEAEALDALITP--ALDRPMSEISPIEHAIMWIGAYEMKHCLDVPWRVVL 133
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E + +A +F D K++N VL+ ++ +
Sbjct: 134 NECIELAKEFGGTDGHKYVNGVLNGIAPQLRAIE 167
>gi|168186196|ref|ZP_02620831.1| transcription antitermination factor NusB [Clostridium botulinum C
str. Eklund]
gi|169295703|gb|EDS77836.1| transcription antitermination factor NusB [Clostridium botulinum C
str. Eklund]
Length = 133
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L+++ I +EI+ ++ ++ +VD + I++
Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKNFKEN---------TDTNMENVDFVYINKIVN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ K+ ID I LT+ W +RL I +ILR E++ +P +V ++E + +A
Sbjct: 53 GIEQNKEDIDKRIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ + P F+N VL + R
Sbjct: 112 KKYSADNSPAFVNGVLGNMIR 132
>gi|20141624|sp|Q9ZE01|NUSB_RICPR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|292571756|gb|ADE29671.1| N utilization substance protein B [Rickettsia prowazekii Rp22]
Length = 155
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+++ IAR+AAVQALYQ I +I+ ++ ++ + + +
Sbjct: 1 MSTNKINKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNNSIDLPKNFKISLSI 60
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
F++++ V + +D +I + LT + ++L ++LR + EL+ C + P +V+
Sbjct: 61 SHFKMLVKSVFENINKLDEIIDNHLTNAKDSVHMPILLRALLRVSICELLFCSTTPAKVV 120
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
I+EY IA+D E F+N++LDK++++
Sbjct: 121 INEYTDIANDLLNEHEIGFVNSILDKIAQENN 152
>gi|182439837|ref|YP_001827556.1| transcription antitermination protein NusB [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326780501|ref|ZP_08239766.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
gi|238689031|sp|B1W456|NUSB_STRGG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|178468353|dbj|BAG22873.1| putative NusB-family protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660834|gb|EGE45680.1| NusB antitermination factor [Streptomyces cf. griseus XylebKG-1]
Length = 143
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQSVLADWVRLSRTDDRQPPVG--------EFTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI W R+ ++ SILR G ELI P V+I E V
Sbjct: 53 VEGYAQYADRIDDLIV-TYAVDWEIDRMPVVDRSILRLGAYELIWMDGTPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPSFVNGLLARF 132
>gi|157364365|ref|YP_001471132.1| transcription antitermination protein NusB [Thermotoga lettingae
TMO]
gi|254772664|sp|A8F7D4|NUSB_THELT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157314969|gb|ABV34068.1| NusB antitermination factor [Thermotoga lettingae TMO]
Length = 140
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RR R + ++Q + S ++ + +S + D
Sbjct: 1 MTRRSKMRDLVFKVIFQNEFRNDSIETVLEDIL---------HISKSGLMKAD---ITRY 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G+ + ID I S E WS RL ++ SILR EL+ VP+EV + E V
Sbjct: 49 VKGIYENLPSIDEKI-SLCLENWSLQRLSLVDRSILRLATYELLYESDVPIEVTLDEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
IA + + KF+N VLDKV++ +
Sbjct: 108 IAKKYGTENSSKFVNGVLDKVAKSFAPEE 136
>gi|251790668|ref|YP_003005389.1| transcription antitermination protein NusB [Dickeya zeae Ech1591]
gi|247539289|gb|ACT07910.1| NusB antitermination factor [Dickeya zeae Ech1591]
Length = 139
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F
Sbjct: 60 EKLDAQMAPYLSRQ--LEELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|152976586|ref|YP_001376103.1| transcription antitermination protein NusB [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189035878|sp|A7GSK0|NUSB_BACCN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|152025338|gb|ABS23108.1| NusB antitermination factor [Bacillus cytotoxicus NVH 391-98]
Length = 130
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LNPKVAVENTLDEGEETNEFLDSL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ K+ ID LI L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VGGFVEHKETIDELIRQNLKK-WKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|194333302|ref|YP_002015162.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
gi|238693314|sp|B4S517|NUSB_PROA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|194311120|gb|ACF45515.1| NusB antitermination factor [Prosthecochloris aestuarii DSM 271]
Length = 168
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R VQALY +D+ T T D + + +F+
Sbjct: 1 MKAHRRHIREKIVQALYTLDVRDTDTATAGDWLITPEISKDPKA----------IRFFKQ 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ ++D ++ ID IS T W SR+ +I +ILR + E++ +P +V I+E +
Sbjct: 51 LLGAIVDNREEIDQYISKH-TFNWDMSRIAIIDKNILRMAMAEILYFEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCV 165
IA F KF+N +LD V ++ +SG +
Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAVY--NDLNKSGKI 142
>gi|227113444|ref|ZP_03827100.1| transcription antitermination protein NusB [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 139
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDQLMAPFLSRQ--IEELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPSVRKGK 138
>gi|94264516|ref|ZP_01288303.1| NusB antitermination factor [delta proteobacterium MLMS-1]
gi|94265524|ref|ZP_01289272.1| NusB antitermination factor [delta proteobacterium MLMS-1]
gi|93453965|gb|EAT04311.1| NusB antitermination factor [delta proteobacterium MLMS-1]
gi|93455075|gb|EAT05302.1| NusB antitermination factor [delta proteobacterium MLMS-1]
Length = 135
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QALYQ +++G + + L + R ++ G
Sbjct: 6 RRKARELALQALYQGEMLGVGALDTLPSL-----------CENFEASRRALPYARELLAG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ W R+ I +++R V E+ VP V I E V +A
Sbjct: 55 IEAH-GEAIDAAIDAAAANWRLDRMSYIDRNLMRIAVYEMRWRDEVPAGVAIDEAVELAK 113
Query: 136 DFFYGDEPKFINAVLDKV 153
+ D P FIN +LD V
Sbjct: 114 RYGADDSPAFINGILDAV 131
>gi|23099336|ref|NP_692802.1| transcription antitermination protein NusB [Oceanobacillus
iheyensis HTE831]
gi|32171652|sp|Q8EQ42|NUSB_OCEIH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|22777565|dbj|BAC13837.1| transcriptional terminator [Oceanobacillus iheyensis HTE831]
Length = 126
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A Q L+Q+DI E++ + + R ++
Sbjct: 2 NRHKAREKAFQVLFQLDINETELEEVMETLKE---------------KERYDVFLRSLVE 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ K ID I S EKW+ R+ + +ILR +LE++ +P V I+E + +A
Sbjct: 47 GVIQHKSVIDEKI-STHLEKWTIDRIASVERTILRMAILEIMYIDDIPQNVSINEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVS 154
H F KF+N VL K+
Sbjct: 106 HTFGDEQSGKFVNGVLSKII 125
>gi|119356339|ref|YP_910983.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
gi|166215679|sp|A1BDT2|NUSB_CHLPD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119353688|gb|ABL64559.1| NusB antitermination factor [Chlorobium phaeobacteroides DSM 266]
Length = 165
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ + T D ++F +
Sbjct: 1 MKTYRRQIREKILQALYTLELRDTDIESAANWLLTKEIQEDPNAM----------KFFNL 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + + ++ ID I+ T W SR+ +I +ILR + EL+ C +P +V I+E +
Sbjct: 51 LLKNIKEHREEIDQYIARH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + + +
Sbjct: 110 EIAKKFSSTDKSSKFVNGILDAIFNELKAE 139
>gi|255658168|ref|ZP_05403577.1| transcription antitermination factor NusB [Mitsuokella multacida
DSM 20544]
gi|260849476|gb|EEX69483.1| transcription antitermination factor NusB [Mitsuokella multacida
DSM 20544]
Length = 143
Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+QAL+Q+D+ + + ET DT L D + ++H
Sbjct: 2 SRRQAREVALQALFQLDLNPAESADQEEMQETLAI--DTALGEAEAMSAHDRAFVAQLVH 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCI 133
G + ID I++ + +W R+ + ++ R E+ + I+E V +
Sbjct: 60 GTRANLEAIDAQIAAN-SREWKVERMAAVDRNLTRMATYEMCFAEEKLTPNIAINEAVEL 118
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A + D +++N +L + + +
Sbjct: 119 AKKYGTDDSSRYVNGILGAIMKSAQ 143
>gi|307129902|ref|YP_003881918.1| transcription antitermination protein [Dickeya dadantii 3937]
gi|306527431|gb|ADM97361.1| transcription antitermination protein [Dickeya dadantii 3937]
Length = 139
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDITYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D ++ L+ + L + +ILR V EL + VP +V I+E + +A F
Sbjct: 60 EKLDAQMAPYLSRQ--LDELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|94500355|ref|ZP_01306887.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
gi|94427390|gb|EAT12368.1| transcription antitermination protein NusB [Oceanobacter sp. RED65]
Length = 128
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QALYQ D+ G S + I +E+ T ++ VD E+FR I+ GV +
Sbjct: 1 MQALYQWDLAGASLSNIEAEFLT-----------DNDMSKVDTEYFRDILRGVPRELDDL 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ CL+ + + + +ILR G EL+ VP V+I+E V ++ F +
Sbjct: 50 DEKLAPCLSR--NMQEVTPVERAILRLGAYELLHRIDVPYRVVINESVELSKKFGANESH 107
Query: 144 KFINAVLDKVSRKEEIKR 161
KFIN LDK+++ +
Sbjct: 108 KFINGALDKLAQAVRVVE 125
>gi|51473361|ref|YP_067118.1| transcription antitermination protein NusB [Rickettsia typhi str.
Wilmington]
gi|51459673|gb|AAU03636.1| transcription termination protein NusB (N utilization substance
protein B) [Rickettsia typhi str. Wilmington]
Length = 173
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Query: 2 TIQDNKKDLKLS----HRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELD 56
++ K L +S +++ IAR+AAVQALYQ I +I+ +L
Sbjct: 10 NNKNYKFLLSMSTNKINKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDLP 69
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + F++++ V + +D +I + LT + ++L ++LR + EL+
Sbjct: 70 KNFKIS-LSISHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELL 128
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
C + P +V+I+EY IA+D E F+N++LDK++++
Sbjct: 129 FCSTTPAKVVINEYTDIANDLLNEHEIGFVNSILDKIAQENN 170
>gi|78357481|ref|YP_388930.1| transcription antitermination factor NusB [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|119390767|sp|Q30YL1|NUSB_DESDG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78219886|gb|ABB39235.1| transcription antitermination factor NusB [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 154
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R +R A Q LY ++ ++ E Y D + + + +
Sbjct: 7 NSSRRSSRALAFQVLYGLNFS--PAKDLAQLQEAYCASPDVSDRGGEAHP---VGFAWEL 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I G ++ +D +I+ + W R+ I +ILR V E++ VP +V I+E +
Sbjct: 62 IEGTWTNQKALDEIITRF-AQNWRVERIGKIELTILRLAVYEMLYRADVPPKVAINEGIE 120
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
++ F FIN +LD ++ E
Sbjct: 121 LSKQFGDDKSRNFINGILDAAAKALEA 147
>gi|120610904|ref|YP_970582.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
gi|120589368|gb|ABM32808.1| NusB antitermination factor [Acidovorax citrulli AAC00-1]
Length = 186
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T + R +R A+QALYQ + T I D S +
Sbjct: 25 TTSTGARKAASKSARSRSRAFALQALYQHIVGRNEATAI-----------DVFTRDLSGF 73
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++HG ++ +D LI+ + + I + + GV E C V
Sbjct: 74 HKADAAHYDALLHGCIENAGALDALIAP--KLDRTLEEISPIEHATMWIGVYEFQNCLDV 131
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P V+I+E V +A +F D K++N VL+ ++
Sbjct: 132 PWRVVINECVELAKEFGGTDGHKYVNGVLNGLAPTLRAAE 171
>gi|320011921|gb|ADW06771.1| NusB antitermination factor [Streptomyces flavogriseus ATCC 33331]
Length = 143
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI W R+ ++ SILR G EL+ S P V+I E V
Sbjct: 53 VEGYAQYADRIDDLIV-TYAVDWEIDRMPVVDRSILRLGAYELVWMDSTPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPAFVNGLLARF 132
>gi|239816087|ref|YP_002944997.1| NusB antitermination factor [Variovorax paradoxus S110]
gi|259514920|sp|C5CPZ2|NUSB_VARPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|239802664|gb|ACS19731.1| NusB antitermination factor [Variovorax paradoxus S110]
Length = 181
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+QALYQ + TEI D + + D
Sbjct: 29 RKASAKSNRSRAREFALQALYQHLVGRNDPTEI-----------DHFTRDLAGFHKADAA 77
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ + +D LI L F + I +++ GV E C VP V++
Sbjct: 78 HYDALLHGSIEGAEQLDALIRPLLDR--KFEEISPIEHAVMWIGVYEFQHCLDVPWRVVL 135
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+E + +A +F D K++NAVL+ ++ +
Sbjct: 136 NECIELAKEFGGTDGHKYVNAVLNGLAPQLRAAE 169
>gi|212638784|ref|YP_002315304.1| transcription antitermination protein NusB [Anoxybacillus
flavithermus WK1]
gi|212560264|gb|ACJ33319.1| Transcription termination factor [Anoxybacillus flavithermus WK1]
Length = 152
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
DN + L +R AR A+QAL+QID+ G E ++
Sbjct: 16 DNMIERVLVMKRHTAREKALQALFQIDVGGIEPHEAVANVIE----------------EE 59
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
+ +++ GV++ ++ ID L+ L EKW+ R+ + SILR V E+ +P+
Sbjct: 60 TDPFMEMLVFGVVEHQKEIDDLLRQHL-EKWTLERVANVDRSILRMAVFEMKYMDDIPLS 118
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
V + E + +A F +FIN VL K+
Sbjct: 119 VSMDEAIELAKVFGDEKSSRFINGVLAKI 147
>gi|83590364|ref|YP_430373.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
gi|119390785|sp|Q2RIA9|NUSB_MOOTA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|83573278|gb|ABC19830.1| NusB antitermination factor [Moorella thermoacetica ATCC 39073]
Length = 145
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+QAL+ ID+ G S + + E + + R ++ G
Sbjct: 3 RRAARAKALQALFAIDVGGTSPDMALEQVLE-----------EGELPPRAMTFTRELVEG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
M ++ ID +I W RL + +ILR + E+ PV V+I+E + +A
Sbjct: 52 TMAKRDAIDAIIRKY-AVGWRLERLAAVDRNILRMALYEMQYHRETPVRVVINEAIELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
+F + +F+N +LD +
Sbjct: 111 NFNNEEAGRFVNGLLDNARKDL 132
>gi|50120067|ref|YP_049234.1| transcription antitermination protein NusB [Pectobacterium
atrosepticum SCRI1043]
gi|81645878|sp|Q6D847|NUSB_ERWCT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|49610593|emb|CAG74038.1| N utilization substance protein B [Pectobacterium atrosepticum
SCRI1043]
Length = 139
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVEHQFLS-----------EQDVKDVDITYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDQLMAPFLSR--RIDELGQVEKAILRLAMFELSKREDVPYKVAINEAIELAKIFGAE 117
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK + +
Sbjct: 118 DSHKFVNGVLDKAAPSVRKGK 138
>gi|253682288|ref|ZP_04863085.1| transcription antitermination factor NusB [Clostridium botulinum D
str. 1873]
gi|253562000|gb|EES91452.1| transcription antitermination factor NusB [Clostridium botulinum D
str. 1873]
Length = 135
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L+++ I EII ++ ++ VD E+ II
Sbjct: 2 NRRKSREIAMKLLFEMSINKEELKEIIHNFKEN---------TDTSLKDVDFEYINKIIQ 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + ID I LT+ W +RL I +ILR E+I +P +V ++E + +A
Sbjct: 53 GVQDNIETIDSKIEENLTK-WKLNRLSKIDLTILRISTYEIIFVEDIPEKVAVNEGIELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ + P FIN VL + +
Sbjct: 112 KKYSAENSPAFINGVLGNMMK 132
>gi|296394716|ref|YP_003659600.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
gi|296181863|gb|ADG98769.1| NusB antitermination factor [Segniliparus rotundus DSM 44985]
Length = 157
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K + R AR AV+ L++ + E+ +E + + +
Sbjct: 10 KRAGSRRKARRRAVELLFEAEARDLDPAELAAERSAELVKDLSAPQL--------TPYAL 61
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++ GV D +D I L W+ RL + SILR V EL+ VP V + E
Sbjct: 62 LLLEGVRDNLDVVDQTIIDHLRGGWTLQRLPAVDRSILRIAVWELLFATEVPTAVAVDEA 121
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +A + D P FIN VL ++ + RS
Sbjct: 122 LELAKELSTDDSPSFINGVLGQLVALADQARSS 154
>gi|22537833|ref|NP_688684.1| transcription antitermination protein NusB [Streptococcus
agalactiae 2603V/R]
gi|25011777|ref|NP_736172.1| transcription antitermination protein NusB [Streptococcus
agalactiae NEM316]
gi|76787394|ref|YP_330307.1| transcription antitermination protein NusB [Streptococcus
agalactiae A909]
gi|76798712|ref|ZP_00780933.1| transcription antitermination factor NusB [Streptococcus agalactiae
18RS21]
gi|77406598|ref|ZP_00783645.1| transcription antitermination factor NusB [Streptococcus agalactiae
H36B]
gi|77409287|ref|ZP_00785993.1| transcription antitermination factor NusB [Streptococcus agalactiae
COH1]
gi|77412442|ref|ZP_00788747.1| transcription antitermination factor NusB [Streptococcus agalactiae
CJB111]
gi|77413939|ref|ZP_00790114.1| transcription antitermination factor NusB [Streptococcus agalactiae
515]
gi|54037925|sp|P65581|NUSB_STRA5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54041675|sp|P65580|NUSB_STRA3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390832|sp|Q3JZJ6|NUSB_STRA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|22534728|gb|AAN00557.1|AE014269_1 N utilization substance protein B [Streptococcus agalactiae
2603V/R]
gi|24413317|emb|CAD47396.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562451|gb|ABA45035.1| transcription antitermination factor NusB [Streptococcus agalactiae
A909]
gi|76585937|gb|EAO62474.1| transcription antitermination factor NusB [Streptococcus agalactiae
18RS21]
gi|77160024|gb|EAO71160.1| transcription antitermination factor NusB [Streptococcus agalactiae
515]
gi|77161506|gb|EAO72512.1| transcription antitermination factor NusB [Streptococcus agalactiae
CJB111]
gi|77172119|gb|EAO75282.1| transcription antitermination factor NusB [Streptococcus agalactiae
COH1]
gi|77174791|gb|EAO77613.1| transcription antitermination factor NusB [Streptococcus agalactiae
H36B]
gi|319745636|gb|EFV97936.1| transcription antitermination factor NusB [Streptococcus agalactiae
ATCC 13813]
Length = 144
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A Q L+ ++ G F + V + + +
Sbjct: 6 KDSRRDLRERAFQTLFSLETGGEFIDAAH-------FAYGYDKTVSEDKVLEVPIFLLNL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+D K +D LISS L WS RL ++ S+LR G+ E+ P V ++E +
Sbjct: 59 VNGVVDHKDELDTLISSHLKSGWSLERLTLVDKSLLRLGLYEIKYFDETPDRVALNEIIE 118
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + KF+N +L + E
Sbjct: 119 IAKKYSDETSAKFVNGLLSQFITNEN 144
>gi|206890845|ref|YP_002249638.1| transcription antitermination factor NusB [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|226738908|sp|B5YHQ2|NUSB_THEYD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|206742783|gb|ACI21840.1| transcription antitermination factor NusB [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 151
Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR +Q LY ++ + + E + E + + +I
Sbjct: 2 KRRKAREYVLQFLYACEMNENTQKICNYNFLQEEIEKFWERNYEEQNSDI-KSFANQLIE 60
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ ID + +KW+ R+ I +ILR + E++ +P +V I+E V IA
Sbjct: 61 GTIEHIDIIDKI-IQKYADKWNIERMITIDKNILRFSIYEILYRQDIPYQVTINEAVEIA 119
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + FIN +LD+++++E
Sbjct: 120 KKYSTKESAAFINGILDRIAKEE 142
>gi|271499577|ref|YP_003332602.1| NusB antitermination factor [Dickeya dadantii Ech586]
gi|270343132|gb|ACZ75897.1| NusB antitermination factor [Dickeya dadantii Ech586]
Length = 139
Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ + E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVELQFLS-----------EQDVKGVDIAYFRELLAGVATQA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D ++ L+ + + L + +ILR V EL + VP +V I+E + +A F
Sbjct: 60 EKLDAQMAPYLSRQ--LNELGQVERAILRLAVYELSKREDVPYKVAINEAIELAKVFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|294670752|ref|ZP_06735614.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307540|gb|EFE48783.1| hypothetical protein NEIELOOT_02461 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 143
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR VQALYQ + S EI + + + D + F
Sbjct: 2 KTSPRRRAREFTVQALYQAALNHASAPEIAKN-----------IREAADFKRADADLFTA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G +I L ++ I IL EL P VII+E +
Sbjct: 51 LFFGAHGNSAEYMQIIRPLLDRDE--KDINPIERGILLMACHELSAMPETPYPVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KFIN +LDK+S +
Sbjct: 109 EVTKTFGGTDSHKFINGILDKLSVQLRPNDP 139
>gi|329938937|ref|ZP_08288311.1| Transcription termination protein NusB [Streptomyces
griseoaurantiacus M045]
gi|329301822|gb|EGG45715.1| Transcription termination protein NusB [Streptomyces
griseoaurantiacus M045]
Length = 142
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWVSLSRSDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID L++ W+ R+ ++ +ILR G ELI P V++ E V
Sbjct: 53 VEGYAEHVTRIDELLAQY-AVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L ++
Sbjct: 112 LAKEFSTDESPGFVNGLLGRL 132
>gi|88856244|ref|ZP_01130904.1| transcription termination factor [marine actinobacterium PHSC20C1]
gi|88814563|gb|EAR24425.1| transcription termination factor [marine actinobacterium PHSC20C1]
Length = 137
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ +Y D+ G S E ++ ++ + + + +
Sbjct: 1 MGARSKARKRALDLMYGADVRGESINEALAT--------ESSRALSDPARATSWAYAQQV 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G+ + ID LI ++ W +R+ + ++LR + E++ VP V ISE V
Sbjct: 53 VVGITEHGDEIDELI-ETYSQGWPLNRMPAVDRALLRIALWEILYNDEVPAGVAISEAVE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
A D FIN +L +++ E
Sbjct: 112 SAKVHSTEDSAGFINGLLGRIAASNE 137
>gi|302380357|ref|ZP_07268827.1| transcription antitermination factor NusB [Finegoldia magna
ACS-171-V-Col3]
gi|302311847|gb|EFK93858.1| transcription antitermination factor NusB [Finegoldia magna
ACS-171-V-Col3]
Length = 137
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 12/144 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R +A+Q +Y++++ + I E+ Y+ D+E+F+ I+
Sbjct: 2 SRRQSRKSAMQLIYEMNMNEDYDKQRIEEFCKYQN-----------INKNDIEFFKEIVL 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ I +I T++W+ R++ + SIL+ GV E++ S P V I+E V +A
Sbjct: 51 NFIEHIDDIVNII-ENNTKQWNLDRINKLDLSILQVGVCEILYVESTPDSVAINEAVELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
++ FIN +L V +++E
Sbjct: 110 KEYSTEKSYSFINGILGSVLKRKE 133
>gi|189347470|ref|YP_001943999.1| NusB antitermination factor [Chlorobium limicola DSM 245]
gi|238692182|sp|B3EFQ8|NUSB_CHLL2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189341617|gb|ACD91020.1| NusB antitermination factor [Chlorobium limicola DSM 245]
Length = 164
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY I++ T D ++F +
Sbjct: 1 MKTYRRQIREKILQALYTIELRDTDIDSAAGWLLTQEILDDPNAM----------KFFNM 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+I + ID I T W SR+ +I +ILR + E++ C +P +V I+E +
Sbjct: 51 LIGSIKAHMSEIDCYI-ERHTFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
IA F KF+N +LD + + +
Sbjct: 110 EIAKKFSSTEKSSKFVNGILDAIFNELKT 138
>gi|225174889|ref|ZP_03728886.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
gi|225169529|gb|EEG78326.1| NusB antitermination factor [Dethiobacter alkaliphilus AHT 1]
Length = 138
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 12/147 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR A + L+Q DI IS+ E+ +E+ R ++
Sbjct: 2 SRRLAREIAFKTLFQYDIGKNEVEPTISQLIE-----------ENGLEGAGVEFSRQLVL 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID ++ L +KW RL + ++LR E++ +P V I+E + ++
Sbjct: 51 GTLKNLEAIDKALAGYL-QKWELGRLAAVDRNVLRLAAFEILYREDIPAAVTINEALELS 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F + KF+N VLDK++R E K
Sbjct: 110 KAFHSEEAAKFLNGVLDKLARHHEGKE 136
>gi|118443864|ref|YP_878051.1| transcription antitermination protein NusB [Clostridium novyi NT]
gi|166215685|sp|A0Q099|NUSB_CLONN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|118134320|gb|ABK61364.1| transcription antitermination factor NusB [Clostridium novyi NT]
Length = 133
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 10/141 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L+++ I +EI+ ++ ++ +VD + I++
Sbjct: 2 NRRKSREVAMKLLFEMSINKEEFSEILKNFKEN---------TDTNMENVDFIYINKIVN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ K+ ID I LT+ W +RL I +ILR E++ +P +V ++E + +A
Sbjct: 53 GIEQNKEDIDKKIEENLTK-WKLNRLSKIDLTILRISTYEIMFMEDIPNKVAVNEAIELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ + P F+N VL + +
Sbjct: 112 KKYSADNSPAFVNGVLGNMIK 132
>gi|322834070|ref|YP_004214097.1| NusB antitermination factor [Rahnella sp. Y9602]
gi|321169271|gb|ADW74970.1| NusB antitermination factor [Rahnella sp. Y9602]
Length = 137
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ E+ T E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSKNDIADVELEFLT-----------EQDVKDVDIAYFRELLAGVANSA 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ +D L++ L+ + L + +ILR + EL + VP +V I+E + +A F
Sbjct: 60 EKLDALMAPYLSRQ--LDELGQVERAILRLALFELSKRQDVPYKVAINEAIELAKTFGAE 117
Query: 141 DEPKFINAVLDK 152
D KF+N VLDK
Sbjct: 118 DSHKFVNGVLDK 129
>gi|282866212|ref|ZP_06275259.1| NusB antitermination factor [Streptomyces sp. ACTE]
gi|282558996|gb|EFB64551.1| NusB antitermination factor [Streptomyces sp. ACTE]
Length = 143
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ D + V E+ +
Sbjct: 1 MAARNKARKRAFQILFEADQRGESVQTVLADWVRLSRTDDRQPPVG--------EFTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI W R+ ++ SILR G ELI S P V+I E V
Sbjct: 53 VEGYAQYADRIDDLIV-TYAVDWEIDRMPVVDRSILRLGAYELIWMDSTPDAVVIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPSFVNGLLARF 132
>gi|225420435|ref|ZP_03762738.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
DSM 15981]
gi|225040922|gb|EEG51168.1| hypothetical protein CLOSTASPAR_06780 [Clostridium asparagiforme
DSM 15981]
Length = 197
Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV---------ESVYLHVDL 66
R R + L+ D S E+ + + Y + + + D
Sbjct: 3 RRELREHCFKMLFSADFYP-SAEEVKEQLKQYFNAPEEDDVDPKGDVTILHKVEIKEEDS 61
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ + G+MD+ ID I+ W R+ + +ILR + E+ S+P +V
Sbjct: 62 RYLEKRVAGIMDKIPEIDGQINEV-AAGWRTKRMGKVELTILRLALFEMKYDDSIPEKVA 120
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
I+E V +A F + P F+N +L K + K + G A
Sbjct: 121 INEAVELAKKFGGDESPSFVNGILAKFAGKAAGRTGGEAEA 161
>gi|227510480|ref|ZP_03940529.1| transcription antitermination protein NusB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513489|ref|ZP_03943538.1| transcription antitermination protein NusB [Lactobacillus buchneri
ATCC 11577]
gi|227524631|ref|ZP_03954680.1| transcription antitermination protein NusB [Lactobacillus hilgardii
ATCC 8290]
gi|227083362|gb|EEI18674.1| transcription antitermination protein NusB [Lactobacillus buchneri
ATCC 11577]
gi|227088115|gb|EEI23427.1| transcription antitermination protein NusB [Lactobacillus hilgardii
ATCC 8290]
gi|227190132|gb|EEI70199.1| transcription antitermination protein NusB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 137
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A Q L+ ++ + E E+ + Y ++
Sbjct: 1 MELTRHQIREIAFQTLFALNANKQTNKE-----------NFFEVLTDGKYGDEYPKYLDE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+D K+ +D LI L WS +R+ IL + E++ +P +V I+E +
Sbjct: 50 LTTGVVDHKEELDNLIEKYLKSGWSINRIAKTDLIILEIALYEMLHVDDLPAKVSINEAI 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A + KF+N +L +
Sbjct: 110 ELAKKYSDDRSRKFVNGILSHALEEL 135
>gi|322384328|ref|ZP_08058026.1| RNA-binding Sun-like protein/16S rRNA
adenosyl-L-methionine-dependent methyltransferase-like
protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321150830|gb|EFX44267.1| RNA-binding Sun-like protein/16S rRNA
adenosyl-L-methionine-dependent methyltransferase-like
protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 461
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 14/167 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ KK + AR AA+Q L +++ + Y ++ +
Sbjct: 2 NQKKPTTNILKVRTAREAALQVLLEVE-----------KEHAYSNLMLNKVLRHADLSRQ 50
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I++G + R ID ++ + + +L+ + +LR +L +P
Sbjct: 51 DAGLATEIVYGTIQRLNTIDCFLARFVKK--RLDKLEPWVKCLLRLSFYQLYYLDRIPDH 108
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSAITQ 170
++E V IA + +N VL V R++ ++ +S I +
Sbjct: 109 AAVNEAVKIAKKRGHQGISGMVNGVLRNVIRQKGDLLLPADLSPIRR 155
>gi|326203177|ref|ZP_08193043.1| sun protein [Clostridium papyrosolvens DSM 2782]
gi|325986823|gb|EGD47653.1| sun protein [Clostridium papyrosolvens DSM 2782]
Length = 467
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+AR A++ LY DI + Y + +D + +++G +
Sbjct: 23 LARETALKILY--DITEN---------QAYSNISVNRHLDNDKLREIDRSFATELVYGTV 71
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
ID +I + +L + ++LR GV +L+ +PV + V +A +
Sbjct: 72 KWLLQIDYIIGKYSSV--KLKKLSPWIKNVLRLGVYQLLHTDRIPVSAACNTAVELAKRY 129
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ +F+NAVL +S+ +
Sbjct: 130 GHQASSRFVNAVLRNISKNID 150
>gi|119896608|ref|YP_931821.1| transcription antitermination protein NusB [Azoarcus sp. BH72]
gi|166215662|sp|A1K279|NUSB_AZOSB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119669021|emb|CAL92934.1| putative N utilization substance protein B [Azoarcus sp. BH72]
Length = 155
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +YQ + G S + + E + + VD E F +++ G +D
Sbjct: 12 ELALQGVYQWLLSGNSPQVVEAHVEAEA----------ADFDKVDRELFVMLLRGTLDNV 61
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ S + L I +IL G EL P V+I+E + +A +
Sbjct: 62 GALQDEFSPFI--HRPIEELSPIERAILLLGTHELKHNIETPYRVVINEAIELAKAYGGT 119
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D +F+N VLDK++ +
Sbjct: 120 DGHRFVNGVLDKLAARLRSIE 140
>gi|317154514|ref|YP_004122562.1| transcription antitermination factor NusB [Desulfovibrio
aespoeensis Aspo-2]
gi|316944765|gb|ADU63816.1| transcription antitermination factor NusB [Desulfovibrio
aespoeensis Aspo-2]
Length = 151
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 11/154 (7%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY 61
+ NKK + R + R A Q LY + +I + +E VE
Sbjct: 1 MSGNKKGNRPG-IRRVGRTLAFQVLYGTHFDDPKNPVDIGTAFERN-------PMVEEQE 52
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
E+ R ++ GV ID I ++ W F R+ +I SILR + E++ +
Sbjct: 53 SETAREFARALVLGVDKNLARIDAAIGEH-SQHWKFDRIAVIELSILRLSLYEMLFTD-I 110
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
PV+ I+E + ++ F F+N +LD V+R
Sbjct: 111 PVKAAINEAIELSKLFGDEKSRGFVNGILDGVAR 144
>gi|157825345|ref|YP_001493065.1| transcription antitermination protein NusB [Rickettsia akari str.
Hartford]
gi|166215710|sp|A8GMD2|NUSB_RICAH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157799303|gb|ABV74557.1| transcription antitermination protein NusB [Rickettsia akari str.
Hartford]
Length = 156
Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + YR + ++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYRNDSSITNLTGNLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LRAG+ EL+ + P +V
Sbjct: 61 ISHFKILVKSVFENINKLDEIIDNHLTNDKDPAHMPILLRALLRAGIYELLFYPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+I+EY IA+D G E F+N+VLD +++++
Sbjct: 121 VINEYTDIANDMLNGYEIGFVNSVLDTIAKEKN 153
>gi|312866399|ref|ZP_07726617.1| transcription antitermination factor NusB [Streptococcus downei
F0415]
gi|311098093|gb|EFQ56319.1| transcription antitermination factor NusB [Streptococcus downei
F0415]
Length = 139
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 6/145 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A QA++ ++ + + + D + +
Sbjct: 1 MTESRHNLRERAFQAIFSLEFGQADFLQAA----NFAYSYDKQGQEGEELEVP--AFLLN 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ G +D ID LIS L EKWS RL + S+LR G+ E+ P +V ++E +
Sbjct: 55 LVKGTVDNLTEIDGLISENLKEKWSLERLTLTDRSLLRLGLYEIKYHEETPAKVALNEVI 114
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
+ + KFIN +L K
Sbjct: 115 ELTKAYSDQTSAKFINGILTKFVED 139
>gi|118579723|ref|YP_900973.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
gi|166215707|sp|A1ANJ5|NUSB_PELPD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|118502433|gb|ABK98915.1| NusB antitermination factor [Pelobacter propionicus DSM 2379]
Length = 143
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A+Q LY +D E++ + E + ++
Sbjct: 4 RRESRELALQMLYALDSNASVGPREMLQMF-----------REEQPVSDRLRLFAEELVQ 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ + ID I ++ WS SR+ + +I+R EL+ +P +V I+E + IA
Sbjct: 53 GVLEHRPAIDAAI-KARSKNWSLSRMPKVDLNIMRLATYELMFRGDIPKKVSINEAIEIA 111
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D P F+N +LD++
Sbjct: 112 RRFGDKDSPAFVNGILDEI 130
>gi|296129685|ref|YP_003636935.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
gi|296021500|gb|ADG74736.1| NusB antitermination factor [Cellulomonas flavigena DSM 20109]
Length = 138
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ + G E++++ VE ++ +
Sbjct: 1 MGARTKARKRALDVLFEAEQRGLDVAELLAKRV-----------VEPGTEASLPQYAVEL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ + ID L+ + + W+ +R+ + ++LR G E++ VP V + E V
Sbjct: 50 VEGVLEHAERIDELL-ATHSHGWTVARMPAVDRALLRLGAWEILWNDDVPDAVAVDEAVS 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + + P F+N +L ++
Sbjct: 109 LARELSTDESPAFVNGLLGRLV 130
>gi|319892510|ref|YP_004149385.1| Transcription termination protein NusB [Staphylococcus
pseudintermedius HKU10-03]
gi|317162206|gb|ADV05749.1| Transcription termination protein NusB [Staphylococcus
pseudintermedius HKU10-03]
gi|323464388|gb|ADX76541.1| transcription antitermination factor NusB [Staphylococcus
pseudintermedius ED99]
Length = 130
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A Q L+Q+++ T + ++ Y +D ++ + ++
Sbjct: 2 SRKQARSQAFQTLFQLEMKNTELT-----------IDEAISFIKEDYPDLDFDFIKWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L W+ +RL ILR E+ P +VII+E V +A
Sbjct: 51 GVKDHQHVLDETISPHLNG-WTIARLLKTDRIILRMATFEMNHSD-TPEKVIINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
F D KFIN VL + R
Sbjct: 109 KQFSDDDHYKFINGVLSHIKRN 130
>gi|260887340|ref|ZP_05898603.1| transcription antitermination factor NusB [Selenomonas sputigena
ATCC 35185]
gi|260862976|gb|EEX77476.1| transcription antitermination factor NusB [Selenomonas sputigena
ATCC 35185]
Length = 160
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+Q L+Q+++ +E SE + D ++ V D + ++
Sbjct: 22 SRRQAREAALQTLFQLELN--PPSEAASEEACQMWALDAAVEEMPVETKRDYSYAASLVR 79
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133
G + ID I++ T W R+ + +I+R + E+ V V + I+E V +
Sbjct: 80 GTREHLAAIDEEIAAS-THDWKLDRMTGVDRNIVRIALYEMKYGAEKVDVGIAINEAVEL 138
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A F D +++N +L ++R
Sbjct: 139 AKKFGTDDSSRYVNGILGGLAR 160
>gi|253575778|ref|ZP_04853113.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844821|gb|EES72834.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 506
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 13/143 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+Q L ++ G Y +S D +++G +
Sbjct: 55 ARSVALQVLTAVEQEG-----------AYSNLLLNGALQKSGLTGPDAGLATELVYGTIQ 103
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R ID + +T+ ++L + ++LR +L +P ++E V +A
Sbjct: 104 RLNTIDYFLEQFVTKG--LAKLAPWVRNLLRLSFYQLQYLDRIPPHAAVNEAVNLAKRKG 161
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
+ +N VL V R++E R
Sbjct: 162 HQGISGMVNGVLRNVLRRKEELR 184
>gi|238063911|ref|ZP_04608620.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
39149]
gi|237885722|gb|EEP74550.1| transcription antitermination factor nusB [Micromonospora sp. ATCC
39149]
Length = 136
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D+ E+++ Y L + +
Sbjct: 1 MPARRKARKRALDVLFEADLRDRPPVEVLAGYVER----------IEKPHPEHLGYAVGL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV ID LI+S E W+ R+ + ++ R V EL+ + V ISE V
Sbjct: 51 VEGVAAHLGRIDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDELDDAVAISEAVE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P+F+N VL +++
Sbjct: 110 LARQMSTDDSPRFLNGVLGRIA 131
>gi|119390814|sp|Q68XK6|NUSB_RICTY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 154
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+++ IAR+AAVQALYQ I +I+ +L + +
Sbjct: 1 MSTNKINKKSIARIAAVQALYQNILQNNYDMYDIMQNILACYHSNSIDLPKNFKIS-LSI 59
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
F++++ V + +D +I + LT + ++L ++LR + EL+ C + P +V+
Sbjct: 60 SHFKMLVKSVFENINKLDEIIDNHLTNDKDPVHMPILLRALLRVSICELLFCSTTPAKVV 119
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
I+EY IA+D E F+N++LDK++++
Sbjct: 120 INEYTDIANDLLNEHEIGFVNSILDKIAQENN 151
>gi|156743196|ref|YP_001433325.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
gi|189035899|sp|A7NP12|NUSB_ROSCS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|156234524|gb|ABU59307.1| NusB antitermination factor [Roseiflexus castenholzii DSM 13941]
Length = 142
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A+Q L+++D +++ E + R
Sbjct: 1 MASLRHRVRAIALQILFELDATDHPPDQVVGRRLE-----------EEQLPPEGERFLRR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE--LIECHSVPVEVIISE 129
++ G + H+D +I W S++ + +ILR + E + + P++ II+E
Sbjct: 50 LVFGAWEHAAHLDRIIEEA-APNWPVSQMPGVDKAILRIALFEALIDKEEKTPLKAIINE 108
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V +A + + +F+N VL V + + G
Sbjct: 109 AVELAKQYGSDNSSRFVNGVLGTVVSRYRERSKG 142
>gi|152991103|ref|YP_001356825.1| transcription antitermination protein NusB [Nitratiruptor sp.
SB155-2]
gi|166215704|sp|A6Q4Q9|NUSB_NITSB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|151422964|dbj|BAF70468.1| transcription antitermination factor NusB [Nitratiruptor sp.
SB155-2]
Length = 139
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 13/146 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A + LY D+ + + E + E+ +
Sbjct: 1 MATRHQAREAVIGLLYAYDLGNPEIKKFAEDILE-----------EKKIRNKQREFALAL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G ++ ID +I L E W R+ I +ILR GV EL + ++I+E V
Sbjct: 50 FKGTVEHLDTIDEMIKKHL-ESWDMERVGHIERAILRLGVYELFYTD-LDPAIVINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A PKFIN VLD ++++ +
Sbjct: 108 LAKKLGTDQSPKFINGVLDAIAKEVK 133
>gi|220928955|ref|YP_002505864.1| sun protein [Clostridium cellulolyticum H10]
gi|219999283|gb|ACL75884.1| sun protein [Clostridium cellulolyticum H10]
Length = 449
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+AR A++ LY DI Y + +D + +++G +
Sbjct: 5 LARETALKILY--DITEN---------HAYSNISVNRHLENDKLREIDRSFATELVYGTV 53
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
ID ++ + +L + +ILR G+ +L+ +PV + V +A +
Sbjct: 54 KWLLQIDYVLGKYSSV--KLKKLSPWIKNILRLGIYQLLHTDRIPVSAACNTGVELAKRY 111
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ +F+NAVL +++ +
Sbjct: 112 GHQASSRFVNAVLRNIAKSKN 132
>gi|110803071|ref|YP_699107.1| transcription antitermination protein NusB [Clostridium perfringens
SM101]
gi|119390760|sp|Q0SS00|NUSB_CLOPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110683572|gb|ABG86942.1| N utilization substance protein B [Clostridium perfringens SM101]
Length = 135
Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R +Q YQ++I + E + + + +DL + + +
Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMEN---------EDISKDDLDLAYIKSGLL 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + +
Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ FIN VLDKV + +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNIK 135
>gi|294501203|ref|YP_003564903.1| transcription antitermination factor NusB [Bacillus megaterium QM
B1551]
gi|295706550|ref|YP_003599625.1| transcription antitermination factor NusB [Bacillus megaterium DSM
319]
gi|294351140|gb|ADE71469.1| transcription antitermination factor NusB [Bacillus megaterium QM
B1551]
gi|294804209|gb|ADF41275.1| transcription antitermination factor NusB [Bacillus megaterium DSM
319]
Length = 130
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+Q D+ E I ++ ++
Sbjct: 2 KRHTARQKALQALFQHDLGQTEPMEAIGNVVQN---------------EKSDQFLESLVL 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV++ +Q ID L+ EKW+ R+ + ILR V E+ +P V ++E + +A
Sbjct: 47 GVVEHQQEIDELL-RNHLEKWTLDRVATVDRVILRIAVYEMKYEEEIPTSVTLNEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVS 154
F KFIN VL KV
Sbjct: 106 KTFGDDQSSKFINGVLSKVL 125
>gi|78187533|ref|YP_375576.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
gi|119390794|sp|Q3B298|NUSB_PELLD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78167435|gb|ABB24533.1| NusB antitermination factor [Chlorobium luteolum DSM 273]
Length = 163
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ T D ++F +
Sbjct: 1 MKTYRRQIREKILQALYTLELRETDIESAAGWLLTPEILEDPNAM----------KFFNL 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + D ++ ID I++ T W SR+ +I +ILR + EL+ C +P +V I+E +
Sbjct: 51 LLKSIKDNREEIDRYIAAH-TFNWDMSRIAIIDKNILRMALAELLYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + + +
Sbjct: 110 EIAKKFNSTDKSSKFVNGILDAIFNELKTE 139
>gi|240013567|ref|ZP_04720480.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
DGI18]
gi|240016006|ref|ZP_04722546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
FA6140]
gi|240120636|ref|ZP_04733598.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID24-1]
Length = 161
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 2 TIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
T+ N+ K+ + R +R AVQA+YQ I + EI S
Sbjct: 10 TVPPNRFKEKIMKTTRRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------SD 58
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D E F + G I L L+ I ++L EL
Sbjct: 59 FAKADEELFNKLFFGTQTNAADYIQKIRPLLDRDE--KDLNPIERAVLLTACHELSAMPE 116
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P VII+E + + F D KF+N +LDK++ +
Sbjct: 117 TPYPVIINEAIEVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 158
>gi|197119391|ref|YP_002139818.1| transcription antitermination factor NusB [Geobacter bemidjiensis
Bem]
gi|238690857|sp|B5E853|NUSB_GEOBB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|197088751|gb|ACH40022.1| transcription antitermination factor NusB [Geobacter bemidjiensis
Bem]
Length = 145
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALY D++ + + + + +
Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANTTLKRITESFSEGEEPTLSVNSKA---YAFASEL 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E +
Sbjct: 58 VNGVVSNLQAIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIE 116
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D F+N +LD+++
Sbjct: 117 VAKKFGADDSASFVNGILDEIA 138
>gi|78222837|ref|YP_384584.1| NusB antitermination factor [Geobacter metallireducens GS-15]
gi|119390772|sp|Q39V65|NUSB_GEOMG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78194092|gb|ABB31859.1| NusB antitermination factor [Geobacter metallireducens GS-15]
Length = 138
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R + R A+Q LY D + ++ D + +
Sbjct: 1 MGARRLGREIALQLLYSRDYTVGEASSLLEMV----------FDEAEPGTAAGRAFSDEL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ ++ ID I+ ++ W+ SR+ + +ILR + EL+ +P V I+E +
Sbjct: 51 VRGVLEHRETIDATITEK-SKNWAISRMAKVDLNILRLAIYELLYRGDIPKNVTINEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D P FIN +LD+V+
Sbjct: 110 VAKKFGTEDSPAFINGILDEVA 131
>gi|187935150|ref|YP_001886595.1| transcription antitermination factor NusB [Clostridium botulinum B
str. Eklund 17B]
gi|238691670|sp|B2TRN6|NUSB_CLOBB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|187723303|gb|ACD24524.1| transcription antitermination factor NusB [Clostridium botulinum B
str. Eklund 17B]
Length = 133
Score = 96.8 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++R A++ L+ + + + E + + ES +D+ + + I+
Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLENFIDNY---------ESDIKELDITYIKRILI 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I
Sbjct: 53 GVENNKDNIDESISKNLCN-WKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VLD + +K
Sbjct: 112 KKYSDEKSVSFVNGVLDNILKK 133
>gi|253699860|ref|YP_003021049.1| NusB antitermination factor [Geobacter sp. M21]
gi|259514841|sp|C6E3M6|NUSB_GEOSM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|251774710|gb|ACT17291.1| NusB antitermination factor [Geobacter sp. M21]
Length = 145
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALY D++ + + + + +
Sbjct: 1 MTTRREGRELALQALYSKDLVLQDANSTLKRITESFSEGEEPTLSVNSKA---YAFASEL 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ Q ID I+ ++ WS +R+ + +ILR V EL+ +P V ++E +
Sbjct: 58 VNGVVSNLQQIDSRIAEK-SKHWSMARMARVDLNILRLAVFELLYRPDIPKNVTMNEAIE 116
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D F+N +LD+++
Sbjct: 117 VAKKFGADDSASFVNGILDEIA 138
>gi|255020761|ref|ZP_05292820.1| Transcription termination protein NusB [Acidithiobacillus caldus
ATCC 51756]
gi|254969823|gb|EET27326.1| Transcription termination protein NusB [Acidithiobacillus caldus
ATCC 51756]
Length = 147
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A +QALYQ + EI ++ + + D +F I +
Sbjct: 2 AREALLQALYQWQLNPAPCGEIARQFLE----------DDERLVGADQRFFEDIWGRLCP 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D I+S + ++ + + +ILR G EL E P VII+E V ++ F
Sbjct: 52 VMETLDQAIASVILDRRWQDEVSEVERAILRLGAFELREERQTPYRVIINEAVELSKAFG 111
Query: 139 YGDEPKFINAVLDKVS---RKEEIKRS-GCVSA 167
+FIN VLD+++ R+ E++ G S
Sbjct: 112 AEQGHRFINGVLDRLAHQWRQAELENPDGDASP 144
>gi|169831182|ref|YP_001717164.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
gi|238688239|sp|B1I3I9|NUSB_DESAP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169638026|gb|ACA59532.1| NusB antitermination factor [Candidatus Desulforudis audaxviator
MP104C]
Length = 138
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R A+Q L+Q ++ S + D + + ++
Sbjct: 2 KRRRQRETALQVLFQAEVARISGERAFAR-----------TMELFGLNTEDFAYAQELVD 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ + +D +IS + +W R+ + +I+R + E+ +P+ V ++E + +A
Sbjct: 51 GVLAKVDRLDRIISRV-SHEWRLERMANVDRNIIRLALYEVFFRDDIPINVAVNEALELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F D +F+N +L KV + E R
Sbjct: 110 RTFGTEDSRRFVNGILGKVVEEPEEYRP 137
>gi|121634481|ref|YP_974726.1| transcription antitermination protein NusB [Neisseria meningitidis
FAM18]
gi|161869623|ref|YP_001598790.1| transcription antitermination protein NusB [Neisseria meningitidis
053442]
gi|254804565|ref|YP_003082786.1| transcription termination factor nusB-family protein [Neisseria
meningitidis alpha14]
gi|166215703|sp|A1KSU6|NUSB_NEIMF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035894|sp|A9M2W7|NUSB_NEIM0 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|120866187|emb|CAM09927.1| putative RNA polymerase antitermination factor [Neisseria
meningitidis FAM18]
gi|161595176|gb|ABX72836.1| N utilization substance protein B [Neisseria meningitidis 053442]
gi|254668107|emb|CBA04659.1| transcription termination factor nusB-family protein [Neisseria
meningitidis alpha14]
gi|254670531|emb|CBA06337.1| N utilization substance protein B [Neisseria meningitidis alpha153]
gi|308388870|gb|ADO31190.1| putative RNA polymerase antitermination factor [Neisseria
meningitidis alpha710]
gi|325131863|gb|EGC54563.1| transcription antitermination factor NusB [Neisseria meningitidis
M6190]
gi|325135725|gb|EGC58337.1| transcription antitermination factor NusB [Neisseria meningitidis
M0579]
gi|325137913|gb|EGC60488.1| transcription antitermination factor NusB [Neisseria meningitidis
ES14902]
gi|325141944|gb|EGC64384.1| transcription antitermination factor NusB [Neisseria meningitidis
961-5945]
gi|325197903|gb|ADY93359.1| transcription antitermination factor NusB [Neisseria meningitidis
G2136]
gi|325202521|gb|ADY97975.1| transcription antitermination factor NusB [Neisseria meningitidis
M01-240149]
gi|325207729|gb|ADZ03181.1| transcription antitermination factor NusB [Neisseria meningitidis
NZ-05/33]
Length = 141
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------PDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAADYIQKIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 138
>gi|239932425|ref|ZP_04689378.1| transcription antitermination protein NusB [Streptomyces ghanaensis
ATCC 14672]
gi|291440791|ref|ZP_06580181.1| transcription antitermination protein NusB [Streptomyces ghanaensis
ATCC 14672]
gi|291343686|gb|EFE70642.1| transcription antitermination protein NusB [Streptomyces ghanaensis
ATCC 14672]
Length = 144
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWIRHSRTDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + Q ID LI+ + W+ R+ ++ SILR G EL+ P V++ E V
Sbjct: 53 VEGYAEHAQRIDGLIAQY-SVGWTLDRMPVVDRSILRLGAYELLWVDETPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P FIN +L ++
Sbjct: 112 LAKEFSTDESPSFINGLLGRL 132
>gi|283782240|ref|YP_003372995.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
gi|283440693|gb|ADB19135.1| NusB antitermination factor [Pirellula staleyi DSM 6068]
Length = 136
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RR AR +Q LY+ D+ + + + R D EL +++ R +
Sbjct: 1 MARRSRAREVVLQILYEDDLNPDRSIAVSDVFLRRRLGDDVEL----------VDFARDL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R++ + ++ + W+ R+ + ++LR G E++ P V I+E V
Sbjct: 51 LRGVRGRRKEL-DVLLQQKADHWTLDRMAVTDRNVLRLGAYEILHT-QTPQRVAINEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A F P+F+N +LD+ +K+
Sbjct: 109 LAKRFGARQSPQFVNGILDRFLQKKR 134
>gi|257063533|ref|YP_003143205.1| transcription antitermination factor NusB [Slackia
heliotrinireducens DSM 20476]
gi|256791186|gb|ACV21856.1| transcription antitermination factor NusB [Slackia
heliotrinireducens DSM 20476]
Length = 183
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R + R AA+Q LY+ DI+G +++ + + E+ + R ++ G
Sbjct: 7 RTLGRRAALQVLYESDILGTPVDKVVD---------EGVVPEEAALND----YARRLLLG 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ID IS ++ W+ R+ ++ ++LR V E+ VPV V I+E V +A
Sbjct: 54 VASHITDIDRQISKS-SKNWAIDRMPLVDRALLRITVFEMQHVDEVPVAVSINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSR 155
DF D +F+N +L +++R
Sbjct: 113 DFGGDDTYRFVNGILGRIAR 132
>gi|159897280|ref|YP_001543527.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
gi|254772643|sp|A9AXI5|NUSB_HERA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|159890319|gb|ABX03399.1| NusB antitermination factor [Herpetosiphon aurantiacus ATCC 23779]
Length = 146
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R AA+QAL+++D +++ + + ++ ++F I++G
Sbjct: 10 RHRVRAAALQALFELDQTTHDLDSVVAR-----------ISDDEMFSAEGRDFFARIVNG 58
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC---HSVPVEVIISEYVC 132
+Q ID LI+ W ++ + ++LR + E++ PV+ +I+E V
Sbjct: 59 AWVNRQEIDDLIAKI-APSWPVHQMPGVDIAVLRIALFEILYDAAADKAPVKAVINEAVE 117
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F + +F+N VL V K E +
Sbjct: 118 LAKHFGSDNSGRFVNGVLSTVVNKPESEE 146
>gi|138895967|ref|YP_001126420.1| transcription antitermination protein NusB [Geobacillus
thermodenitrificans NG80-2]
gi|166215689|sp|A4IQS1|NUSB_GEOTN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|134267480|gb|ABO67675.1| N utilization substance protein B [Geobacillus thermodenitrificans
NG80-2]
Length = 130
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ E I + VD + R ++
Sbjct: 2 KRHEAREKALQALFQIDVGHIPPDEAIGNV--------------TGSGEVD-PFLRQLVF 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V++ + ID L+ S L EKW R+ + ILR E+ VPV V + E V +A
Sbjct: 47 DVIEHRAEIDELLRSNL-EKWKLERVANVDRVILRMATYEMKYVDDVPVSVSLDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
F F+N VL KV
Sbjct: 106 KKFGDWKSGSFVNGVLSKV 124
>gi|29833402|ref|NP_828036.1| transcription antitermination protein NusB [Streptomyces
avermitilis MA-4680]
gi|39931877|sp|Q827R4|NUSB_STRAW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|29610525|dbj|BAC74571.1| putative transcription termination protein [Streptomyces
avermitilis MA-4680]
Length = 144
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGVDVLTVLADWIRHSRTDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID LI S W+ R+ ++ +ILR G EL+ P V++ E V
Sbjct: 53 VEGYAKKVNRIDELI-SQYAVGWTLDRMPVVDRNILRLGTYELLWVDETPDAVVLDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L ++
Sbjct: 112 LAKEFSTDDSPAFVNGLLGRL 132
>gi|119716645|ref|YP_923610.1| transcription antitermination factor NusB [Nocardioides sp. JS614]
gi|166215705|sp|A1SJD8|NUSB_NOCSJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119537306|gb|ABL81923.1| NusB antitermination factor [Nocardioides sp. JS614]
Length = 135
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 14/145 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L+ D+ G + + + +
Sbjct: 1 MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTND-------------YTATL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ + ID L+SS + W+ R+ + ++LR GV EL+ VP V +SE +
Sbjct: 48 VRGVVEHQARIDELLSSY-SHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ D + P+F+N +L + R +
Sbjct: 107 LVTDLSTDESPQFVNGILGSIVRNK 131
>gi|301059426|ref|ZP_07200347.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
gi|300446462|gb|EFK10306.1| leucine--tRNA ligase [delta proteobacterium NaphS2]
Length = 1011
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A+Q L+ ++ E + + R ++ GV RK
Sbjct: 1 MALQVLFHLEYSDDDPLEACRLISENF-----------EMAEASVAFSRDLVSGVCQRKT 49
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D +I ++ W R+ + SILR E++ +P V + E V + F D
Sbjct: 50 ILDRVIGRS-SKHWRLERMARLDRSILRLATYEMLYLEDIPPRVSLDEAVELGKRFGSED 108
Query: 142 EPKFINAVLDKVSRKEEIKRSG 163
++IN VLD + +
Sbjct: 109 SGRYINGVLDNIFNTLDTLEDA 130
>gi|18310806|ref|NP_562740.1| transcription antitermination protein NusB [Clostridium perfringens
str. 13]
gi|110801167|ref|YP_696507.1| transcription antitermination protein NusB [Clostridium perfringens
ATCC 13124]
gi|168206122|ref|ZP_02632127.1| N utilization substance protein B [Clostridium perfringens E str.
JGS1987]
gi|168210813|ref|ZP_02636438.1| N utilization substance protein B [Clostridium perfringens B str.
ATCC 3626]
gi|168214398|ref|ZP_02640023.1| N utilization substance protein B [Clostridium perfringens CPE str.
F4969]
gi|169343548|ref|ZP_02864547.1| N utilization substance protein B [Clostridium perfringens C str.
JGS1495]
gi|182625668|ref|ZP_02953437.1| N utilization substance protein B [Clostridium perfringens D str.
JGS1721]
gi|22095945|sp|Q8XJD6|NUSB_CLOPE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390759|sp|Q0TPD3|NUSB_CLOP1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|18145487|dbj|BAB81530.1| probable N utilization substance protein B [Clostridium perfringens
str. 13]
gi|110675814|gb|ABG84801.1| N utilization substance protein B [Clostridium perfringens ATCC
13124]
gi|169298108|gb|EDS80198.1| N utilization substance protein B [Clostridium perfringens C str.
JGS1495]
gi|170662434|gb|EDT15117.1| N utilization substance protein B [Clostridium perfringens E str.
JGS1987]
gi|170711117|gb|EDT23299.1| N utilization substance protein B [Clostridium perfringens B str.
ATCC 3626]
gi|170714129|gb|EDT26311.1| N utilization substance protein B [Clostridium perfringens CPE str.
F4969]
gi|177909070|gb|EDT71545.1| N utilization substance protein B [Clostridium perfringens D str.
JGS1721]
Length = 135
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R +Q YQ++I + E + + + +DL + + +
Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMEN---------EDISKDDLDLAYIKSGLL 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + +
Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ FIN VLDKV + +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMQ 135
>gi|295106070|emb|CBL03613.1| transcription antitermination factor NusB [Gordonibacter pamelaeae
7-10-1-b]
Length = 160
Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
H R AR +A+ LY +I T+I E R+ A+ + + ++
Sbjct: 6 HERTRARRSALALLYTSEITDEGATKIA---EEGRYLAEDGPLPD---------YATALV 53
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + ID +++ +E W+ +R+ ++ SILR E++ VP V I+E V +
Sbjct: 54 RGVEAHRVAIDKHLAAT-SENWALARMPIVDRSILRLATYEMMYVDDVPTSVTINEAVEL 112
Query: 134 AHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAI 168
A DF D P+F+N VL ++++ + +++ SA
Sbjct: 113 AKDFGGEDESPRFVNGVLGRIAKILDEEKAAPKSAP 148
>gi|297198328|ref|ZP_06915725.1| transcription antitermination factor NusB [Streptomyces sviceus
ATCC 29083]
gi|197714379|gb|EDY58413.1| transcription antitermination factor NusB [Streptomyces sviceus
ATCC 29083]
Length = 144
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D +++++ + E E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRDADVLTVLADWIRHS--------REDTRQPPVSEYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + Q ID LI+ + W+ R+ ++ +ILR G ELI P V++ E V
Sbjct: 53 VEGYAEHAQRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWADETPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L ++
Sbjct: 112 LAKEFSTDESPSFVNGLLGRL 132
>gi|219847234|ref|YP_002461667.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
gi|254772623|sp|B8G2S7|NUSB_CHLAD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219541493|gb|ACL23231.1| NusB antitermination factor [Chloroflexus aggregans DSM 9485]
Length = 150
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++L+ +R R+AA+Q L+++D + +++ T + E+
Sbjct: 4 VRLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSAESAEFL 52
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE--LIECHSVPVEVII 127
R ++ G + + ++D +I W +++ + ++LR + E + E P++ +I
Sbjct: 53 RRLVFGTWEHRSYLDRIIEEA-APNWPVNQMPGVDKAVLRIALFELLIDEVEKTPIKAVI 111
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+E V +A +F + +F+N VL V + +R
Sbjct: 112 NEAVELAKEFGSDNSSRFVNGVLGTVVTRYLAEREA 147
>gi|15807061|ref|NP_295790.1| N-utilization substance protein B [Deinococcus radiodurans R1]
gi|22095974|sp|Q9RSQ7|NUSB_DEIRA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|6459861|gb|AAF11617.1|AE002043_2 N-utilization substance protein B [Deinococcus radiodurans R1]
Length = 192
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +K ++ R AR + L++ D + T E D
Sbjct: 1 MTR-RREKAVQPVGTRRAAREFVFRVLFEADRGDVPLQAVF----TRAEGVMREGDDTFP 55
Query: 61 YLHVD-LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
L D L + ++ G+ ++ ID ++ + W+F ++ ++LR EL+
Sbjct: 56 QLGPDALHFAEELVTGLERHREAIDDVLHRTI-RGWTFDQMAQTDLNVLRLATYELMYTP 114
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V I V IA F D +F+N VL +SR + +A
Sbjct: 115 EPHPPV-IESAVRIARKFGGDDSGRFVNGVLAGLSRNLREEVGESPAA 161
>gi|15644510|ref|NP_229562.1| transcription antitermination protein NusB [Thermotoga maritima
MSB8]
gi|7387977|sp|Q9X286|NUSB_THEMA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|52695948|pdb|1TZT|A Chain A, T. Maritima Nusb, P21
gi|52695949|pdb|1TZT|B Chain B, T. Maritima Nusb, P21
gi|52695950|pdb|1TZU|A Chain A, T. Maritima Nusb, P212121
gi|52695951|pdb|1TZV|A Chain A, T. Maritima Nusb, P3121, Form 1
gi|52695952|pdb|1TZW|A Chain A, T. Maritima Nusb, P3121, Form 2
gi|52695953|pdb|1TZX|A Chain A, T. Maritima Nusb, P3221
gi|52695954|pdb|1TZX|B Chain B, T. Maritima Nusb, P3221
gi|4982344|gb|AAD36829.1|AE001815_3 N utilization substance protein B [Thermotoga maritima MSB8]
gi|22859189|emb|CAD45556.1| N utilisation substance protein B [Expression vector
pNCO113-TM-nusB]
Length = 142
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R RLA +AL+Q + +I+ E + Y E R
Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKEDAR 48
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I G+ + ID LIS L EKWS +RL ++ ++LR EL+ +P+EV I E
Sbjct: 49 RYIRGIKENLSMIDDLISRYL-EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEA 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ IA + + KF+N +LD+++++ K
Sbjct: 108 IEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138
>gi|332686256|ref|YP_004456030.1| transcription termination protein NusB [Melissococcus plutonius
ATCC 35311]
gi|332370265|dbj|BAK21221.1| transcription termination protein NusB [Melissococcus plutonius
ATCC 35311]
Length = 158
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R R A+QAL+ +D T + Y D + ++ +
Sbjct: 3 KQKLTRREIREKALQALFPLDFN---TELTKQDAIDYALMLDNYEVISEDQENLIPTYLD 59
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV K +D +I L + W+F RL I ILR V E++ VP V ++E
Sbjct: 60 FLVDGVCSHKNELDQVIKRLLGKNWTFERLSKIDTVILRMAVFEMMYSSDVPAPVALNEA 119
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +A + + KF N +L V ++ E
Sbjct: 120 LELAKKYSDDNARKFTNGILANVLKEIE 147
>gi|302335896|ref|YP_003801103.1| NusB antitermination factor [Olsenella uli DSM 7084]
gi|301319736|gb|ADK68223.1| NusB antitermination factor [Olsenella uli DSM 7084]
Length = 165
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +AR A+Q L+Q + G S E++ + + G
Sbjct: 10 RTLARSQALQLLFQAEATGRSVFEVLEGDYALTQGPLD-------------PFGESLARG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D + +D +I + + WS SR+ + ++LR + E++E V + I E V +A
Sbjct: 57 VDDMRTDLDAII-AVTSSNWSISRMPSVDRNLLRLALYEMLEVDEVATPIAIDECVELAK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ + +F+N +L +V+ + E+ SA Q
Sbjct: 116 AYGTAESSRFVNGLLGRVAARLELGEDVISSARAQ 150
>gi|121611696|ref|YP_999503.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
gi|121556336|gb|ABM60485.1| NusB antitermination factor [Verminephrobacter eiseniae EF01-2]
Length = 176
Score = 96.0 bits (237), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+QALYQ + G +I D + + D ++ ++H
Sbjct: 33 PRSRAREFALQALYQHLVGGNDAADI-----------DEFTRGLAGFHKADAAHYQTLLH 81
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ID LI L + + I + + GV E C VP V+++E + +A
Sbjct: 82 GCIGAAADIDALIVPLLDRQ--LIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELA 139
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+F D K++NA+L+ ++ +
Sbjct: 140 KEFGGTDGHKYVNAMLNALAPRLRAAEVAA 169
>gi|222526903|ref|YP_002571374.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
gi|254772624|sp|B9LDT2|NUSB_CHLSY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|222450782|gb|ACM55048.1| NusB antitermination factor [Chloroflexus sp. Y-400-fl]
Length = 151
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+L+ +R R+AA+Q L+++D + +++ T + E+ R
Sbjct: 5 RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 53
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIIS 128
++ G + + ++D +I W +++ + ++LR + EL+ P++ +I+
Sbjct: 54 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 112
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F + +F+N VL V
Sbjct: 113 EAVELAKQFGSDNSSRFVNGVLGTVV 138
>gi|189485423|ref|YP_001956364.1| transcription antitermination factor NusB [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|170287382|dbj|BAG13903.1| transcription antitermination factor NusB [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 142
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 13/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR ++ LY +D I + + Y + +
Sbjct: 1 MGTRRKARECSLHMLYAVDNCNVPIESIYNSFAVYF-----------PKGEAYRMFALDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV D K+ +D LI + W R+ + +I+R E++ ++P+ VII E V
Sbjct: 50 FKGVCDNKEDLDSLI-KQCAKNWEIERMAAVDRNIIRLATYEIMATTNIPIRVIIDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I+ + D KF+N +LDK+ +K +++
Sbjct: 109 ISKKYSTKDSSKFVNGILDKL-KKIRTQKN 137
>gi|59800707|ref|YP_207419.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
FA 1090]
gi|194097970|ref|YP_002001018.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
NCCP11945]
gi|239998442|ref|ZP_04718366.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
35/02]
gi|240080146|ref|ZP_04724689.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
FA19]
gi|240112360|ref|ZP_04726850.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
MS11]
gi|240115100|ref|ZP_04729162.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID18]
gi|240117383|ref|ZP_04731445.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID1]
gi|240122940|ref|ZP_04735896.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID332]
gi|240125192|ref|ZP_04738078.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-92-679]
gi|240127648|ref|ZP_04740309.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-93-1035]
gi|254493161|ref|ZP_05106332.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
1291]
gi|260441085|ref|ZP_05794901.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
DGI2]
gi|268594303|ref|ZP_06128470.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
35/02]
gi|268596297|ref|ZP_06130464.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
FA19]
gi|268598417|ref|ZP_06132584.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
MS11]
gi|268600773|ref|ZP_06134940.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID18]
gi|268603079|ref|ZP_06137246.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID1]
gi|268681559|ref|ZP_06148421.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID332]
gi|268683788|ref|ZP_06150650.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-92-679]
gi|268686028|ref|ZP_06152890.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-93-1035]
gi|291044417|ref|ZP_06570126.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
DGI2]
gi|293399595|ref|ZP_06643748.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
F62]
gi|75432566|sp|Q5F9Y0|NUSB_NEIG1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690178|sp|B4RJT3|NUSB_NEIG2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|59717602|gb|AAW89007.1| putative transcription termination factor [Neisseria gonorrhoeae FA
1090]
gi|193933260|gb|ACF29084.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
NCCP11945]
gi|226512201|gb|EEH61546.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
1291]
gi|268547692|gb|EEZ43110.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
35/02]
gi|268550085|gb|EEZ45104.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
FA19]
gi|268582548|gb|EEZ47224.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
MS11]
gi|268584904|gb|EEZ49580.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID18]
gi|268587210|gb|EEZ51886.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID1]
gi|268621843|gb|EEZ54243.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
PID332]
gi|268624072|gb|EEZ56472.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-92-679]
gi|268626312|gb|EEZ58712.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
SK-93-1035]
gi|291011311|gb|EFE03307.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
DGI2]
gi|291610164|gb|EFF39286.1| transcription antitermination factor NusB [Neisseria gonorrhoeae
F62]
gi|317163726|gb|ADV07267.1| transcription antitermination protein NusB [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 141
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI S + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------SDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAADYIQKIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 138
>gi|188590523|ref|YP_001921552.1| transcription antitermination factor NusB [Clostridium botulinum E3
str. Alaska E43]
gi|238689705|sp|B2V4R8|NUSB_CLOBA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|188500804|gb|ACD53940.1| transcription antitermination factor NusB [Clostridium botulinum E3
str. Alaska E43]
Length = 133
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++R A++ L+ + + + E + + ES +D+ + + I+
Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLGNFIDNY---------ESDIKELDITYIKRILI 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I
Sbjct: 53 GVENNKDNIDEAISKNLCN-WKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133
>gi|227515668|ref|ZP_03945717.1| transcription antitermination protein NusB [Lactobacillus fermentum
ATCC 14931]
gi|260663543|ref|ZP_05864433.1| transcription antitermination factor NusB [Lactobacillus fermentum
28-3-CHN]
gi|227085971|gb|EEI21283.1| transcription antitermination protein NusB [Lactobacillus fermentum
ATCC 14931]
gi|260552084|gb|EEX25137.1| transcription antitermination factor NusB [Lactobacillus fermentum
28-3-CHN]
Length = 139
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ +R R A Q L+ + ++ + E E V +
Sbjct: 1 MTFKRRKIREVAFQTLFAM------ASDPEVDREQLYKELLPLAPQEEV-----PAYLEE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + D I L WS SR++ ILR + E+ VPV V I E +
Sbjct: 50 LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+ F KFIN VL +
Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131
>gi|239978405|ref|ZP_04700929.1| transcription antitermination protein NusB [Streptomyces albus
J1074]
gi|291450301|ref|ZP_06589691.1| transcription antitermination protein NusB [Streptomyces albus
J1074]
gi|291353250|gb|EFE80152.1| transcription antitermination protein NusB [Streptomyces albus
J1074]
Length = 142
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEADQRSTDVLTVLADWIRHARSDTRQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ++ ID LI+ W+ R+ ++ +ILR G ELI + P V++ E V
Sbjct: 53 VEGYAEHERRIDELIAQY-AVDWTLDRMPVVDRNILRLGAYELIWVDTTPDAVVLDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F D P F+N +L +
Sbjct: 112 LAKEFSTDDSPAFVNGLLARF 132
>gi|262196667|ref|YP_003267876.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
gi|262080014|gb|ACY15983.1| NusB antitermination factor [Haliangium ochraceum DSM 14365]
Length = 150
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 11/150 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q LY +D+ E Y D +D E+ ++ R +I
Sbjct: 6 RRRARSYALQVLYALDLN--PLEEPTRALLEYAGRFDLRIDEEAG------DFARSLIEQ 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ID I + W R+ + ++LR V EL + V+I+E V +A
Sbjct: 58 VYPHLERIDERI-QTASRNWRIERMSRVDRNVLRLAVGELSQPDGAAARVVINEAVELAK 116
Query: 136 DFFYGDEPKFINAVLDKV--SRKEEIKRSG 163
F + P F+N +LD+V ++++ +G
Sbjct: 117 RFGTTESPAFVNGILDRVDQHKRDDANPNG 146
>gi|145219990|ref|YP_001130699.1| sun protein [Prosthecochloris vibrioformis DSM 265]
gi|145206154|gb|ABP37197.1| sun protein [Chlorobium phaeovibrioides DSM 265]
Length = 445
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A L ++ + ++ ES D + +++GV
Sbjct: 2 TSARELAFTLLQALETGN-----------RHSDSLLHDMLQESSLSRTDRAFATSLVNGV 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + +D +I + + + + +ILR G +L+ VP +++E V +A
Sbjct: 51 LRYRLQLDFVIGHFYS--HNLQKASPAIRNILRLGAWQLLFLDRVPAWAVVNESVRLARR 108
Query: 137 FFYGDEPKFINAVLDKVS 154
F K +NAVL K+S
Sbjct: 109 FKGERMAKLVNAVLRKIS 126
>gi|331697319|ref|YP_004333558.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
gi|326952008|gb|AEA25705.1| NusB antitermination factor [Pseudonocardia dioxanivorans CB1190]
Length = 139
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ + G E++ E+ ++ ++
Sbjct: 1 MRARTKARKRALDILFESEARGDDPLEVLRNR------------RETDDAPPVSDYAALL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ ++ ID L++ E W+ +R+ + ++LR GV EL+ + V I+E V
Sbjct: 49 VQGVVEHRERIDQLLAEH-AEGWTVARMPAVDRTLLRIGVFELLWVDEIDDPVAITEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A D P+F+N VL +++ E R+
Sbjct: 108 LARTLSTDDSPRFLNGVLGRIADIAEHLRA 137
>gi|256847385|ref|ZP_05552831.1| transcription antitermination factor NusB [Lactobacillus
coleohominis 101-4-CHN]
gi|256716049|gb|EEU31024.1| transcription antitermination factor NusB [Lactobacillus
coleohominis 101-4-CHN]
Length = 137
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R+AA Q L+ + I S + A ++ ++
Sbjct: 1 MSFSRHTIRIAAFQTLFAL-INNPSADK----------GALYAEVLKLGSKETAPQYLDE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + +D +IS+ LT W+ RL ILR + EL +P ++I+E +
Sbjct: 50 LVSGVQEHQADLDAIISNYLTNNWTIDRLARPNLVILRIALYELQYEKELPAPIVINEAL 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
+A F +FIN VL ++
Sbjct: 110 ELAKSFSDDKSRRFINGVLGHYEKE 134
>gi|168215452|ref|ZP_02641077.1| N utilization substance protein B [Clostridium perfringens NCTC
8239]
gi|182382114|gb|EDT79593.1| N utilization substance protein B [Clostridium perfringens NCTC
8239]
Length = 135
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R +Q YQ++I + E + + + +DL + + +
Sbjct: 2 NRVKSREYLLQLAYQMEITSETALETFNSFMEN---------EDISKDDLDLAYIKSGLL 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + K+ +D LI S L + W +R+ + SILR E++ VP +V I+E + +
Sbjct: 53 GIEENKEKLDSLIESQLVK-WKLNRISKVNLSILRISTYEILFAEDVPGKVSINEAIELC 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ FIN VLDKV + +
Sbjct: 112 KKYSDNKSVSFINGVLDKVYKNMK 135
>gi|300784648|ref|YP_003764939.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
gi|299794162|gb|ADJ44537.1| transcription antiterminator NusB [Amycolatopsis mediterranei U32]
Length = 151
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 13/153 (8%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + + R AR AV+ LY+ ++++ V +
Sbjct: 1 MPTSKPHPNRGGAISRRQARRRAVEMLYEAVQRDTDAVTLLADR------------VGAT 48
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ ++ GV RK ID L++ + W+ R+ + ++LR GV EL+
Sbjct: 49 EVDPIGDYTITLVEGVTGRKTQIDELLAEH-AQGWTLERMPKVDLAVLRVGVYELLWAED 107
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
VP V I E V +A + D P+F+N VL ++
Sbjct: 108 VPDPVAIDEAVGLAKELSTDDSPRFVNGVLGRI 140
>gi|187779509|ref|ZP_02995982.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
15579]
gi|187773134|gb|EDU36936.1| hypothetical protein CLOSPO_03105 [Clostridium sporogenes ATCC
15579]
Length = 143
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD---TELDVESVYLHVDLEWFRV 71
R +R A++ L+Q + + + + R + + VD+++ +
Sbjct: 2 NRRKSREVAMRLLFQTTLNEENLEVALENLKDVRESEESAKEKDYESVDLKDVDIDYVKR 61
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
II G+ + K+ ID I L W RL + SILR EL +P +V ++E +
Sbjct: 62 IIKGIEENKEEIDEKIKGNLKN-WKIERLSKVDLSILRLCTYELKFEEDIPSKVSVNEAI 120
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A + FIN VL K+
Sbjct: 121 ELAKKYSGEKAATFINGVLGKMI 143
>gi|294055107|ref|YP_003548765.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
45221]
gi|293614440|gb|ADE54595.1| NusB antitermination factor [Coraliomargarita akajimensis DSM
45221]
Length = 153
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+++ + +R R AVQ LYQ ++ A +
Sbjct: 1 MENEDPKVNKRSQRRDCRTCAVQFLYQWEMNKPD----------ELNDAIAVFFEGQGFS 50
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ +IHG +D ID I S W+F R+ I SILR + EL+ +P
Sbjct: 51 RNYYAFSEELIHGALDNIAKIDDEIMSH-ANNWTFDRIAKIDLSILRLAIYELLYRTDIP 109
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V I+E + ++ F D +FIN +LDK+ K++I R
Sbjct: 110 PIVSINEAIDLSKVFSNPDSKRFINGILDKM--KDKINRP 147
>gi|302525862|ref|ZP_07278204.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
gi|302434757|gb|EFL06573.1| transcription antitermination factor NusB [Streptomyces sp. AA4]
Length = 152
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AV+ LY+ ++++ V +V + ++ ++
Sbjct: 16 SRRQARRRAVEMLYEAAQRSADPVTLLADR------------VGAVEVDPVADYTITVVE 63
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ ID L++ ++ W+ R+ + ++LR GV E++ VP V I E V +A
Sbjct: 64 GVTAHRERIDELLAEH-SQGWTLERMPPVDLAVLRVGVYEMLWSADVPDAVAIDEAVGLA 122
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ D P+F+N VL ++
Sbjct: 123 KELSTDDSPRFVNGVLGRI 141
>gi|251778082|ref|ZP_04821002.1| transcription antitermination factor NusB [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082397|gb|EES48287.1| transcription antitermination factor NusB [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 133
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++R A++ L+ + + + E + + ES +D+ + + I+
Sbjct: 2 NRKLSREKAMELLFGMTLNTDNCEETLENFIDNY---------ESDIKELDITYIKRILI 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K +ID IS L W R+ + ILR V EL+ +P V I+E + I
Sbjct: 53 GVENNKDNIDEAISKNLCN-WKIDRISKVNLCILRLAVYELLHDEEIPNRVAINEALEIT 111
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ FIN VLD + +K
Sbjct: 112 KKYSDEKSVSFINGVLDNILKK 133
>gi|150020739|ref|YP_001306093.1| transcription antitermination protein NusB [Thermosipho
melanesiensis BI429]
gi|166215726|sp|A6LLA7|NUSB_THEM4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|149793260|gb|ABR30708.1| NusB antitermination factor [Thermosipho melanesiensis BI429]
Length = 141
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A ++L+Q D + + E
Sbjct: 1 MLKSRHKMREAIFKSLFQWDFNKEEI------------LEEISKEHIVSLEPNLQELAVN 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G+ + ID +IS L W+ RL + +ILR G ELI +P+EV + E +
Sbjct: 49 YLKGIRENIDVIDEIISKYLKN-WTLERLSVTDRNILRLGTYELIYVDDIPIEVTLDEMI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + + KF+N VLDK+++ E K
Sbjct: 108 ELGKTYGTENSGKFVNGVLDKIAKAEAPKE 137
>gi|219681813|ref|YP_002468199.1| transcription antitermination protein NusB [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|257471515|ref|ZP_05635514.1| transcription antitermination protein NusB [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|254772618|sp|B8D9P0|NUSB_BUCA5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772619|sp|B8D7Z2|NUSB_BUCAT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219622101|gb|ACL30257.1| transcription antitermination protein NusB [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624656|gb|ACL30811.1| transcription antitermination protein NusB [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311086189|gb|ADP66271.1| transcription antitermination protein NusB [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311087353|gb|ADP67433.1| transcription antitermination protein NusB [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
Length = 143
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A+Q LY +I + E + E ++D+ +F
Sbjct: 1 MKPSF-RRKARACALQVLYSWEISHNNIKESAIYFL-----------KEKNKKNIDIVYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+I G+ ++ID L+ S L I +ILR EL + + +P +V I+E
Sbjct: 49 YELIIGITYDCKNIDNLMKPY--LFRSLKELGHIERAILRISFYELHKRNDIPYKVSINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
+ +A F D KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129
>gi|220904887|ref|YP_002480199.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254772632|sp|B8J194|NUSB_DESDA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219869186|gb|ACL49521.1| NusB antitermination factor [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 164
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 7/158 (4%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT-ELDVESVYLHVDLEWFRVIIH 74
R R A Q LY + + ++R D ES + ++
Sbjct: 9 RRGERELAFQVLYGLSFT--PARSLEELRRSFRMSPDNLARSEESGVPVEACGFSWELVE 66
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV +D IS + W R+ + ++LR EL+ VP +V I+E + ++
Sbjct: 67 GVWSNSSALDETISRF-SHNWRVDRMGRVELTLLRLAAYELVFRADVPPKVAINEALELS 125
Query: 135 HDFFYGDEPKFINAVLDKVSR---KEEIKRSGCVSAIT 169
F G+ FIN +LD V++ E++R S +
Sbjct: 126 RQFGEGNAKNFINGILDAVAKALENGELQRCAAPSNTS 163
>gi|261392944|emb|CAX50529.1| N utilization substance protein B (NusB protein) [Neisseria
meningitidis 8013]
gi|325127809|gb|EGC50717.1| transcription antitermination factor NusB [Neisseria meningitidis
N1568]
Length = 141
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI S + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------SDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAAEYIQQIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 138
>gi|119384293|ref|YP_915349.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
gi|119374060|gb|ABL69653.1| NusB antitermination factor [Paracoccus denitrificans PD1222]
Length = 166
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
L AVQAL+Q++ G S + E+ +R + E D + V D F I+ + +
Sbjct: 26 LYAVQALFQMEAAGQSADRVQREFLNWRIGREDE-DDDIVSAEADQALFTRIVDDAVTWQ 84
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
ID + L KW R+D +L S+ RA EL+ P +V+I+EYV +A FF
Sbjct: 85 SKIDQMTDRALVAKWPIDRIDPVLRSVFRAAGAELV-TPKTPPKVVITEYVRLAQTFFAE 143
Query: 141 -DEPKFINAVLDKVSRKEEIK 160
E KF+NAVLD ++R+ +
Sbjct: 144 GRESKFVNAVLDHMAREARPE 164
>gi|172040644|ref|YP_001800358.1| transcription antitermination protein NusB [Corynebacterium
urealyticum DSM 7109]
gi|171851948|emb|CAQ04924.1| N utilization substance protein B [Corynebacterium urealyticum DSM
7109]
Length = 248
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 19/172 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
K R AR AV L++ + +I+ E + ++ E+
Sbjct: 36 FKRRGARYKARRRAVDILFEAEFRDIDPVDIMEERAELAKDQENQI-------KPIPEYT 88
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I+ GV ID I+ LT W+ R+ + +++R EL+ VP V +SE
Sbjct: 89 SQIVPGVASNLDAIDDAIAVHLTSDWTLDRIPAVDRAVMRVAAWELMFNADVPHRVALSE 148
Query: 130 YVCIAHDFFYGDEPKFINAVLDKV------------SRKEEIKRSGCVSAIT 169
+ +A ++ + P ++NAVLD V + + E ++SG S T
Sbjct: 149 GIELASEYSHVKAPDYVNAVLDGVATDADAAMADRLAAQREQEQSGSESGTT 200
>gi|39996792|ref|NP_952743.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
gi|81702305|sp|Q74CI1|NUSB_GEOSL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39983680|gb|AAR35070.1| N utilization substance protein B [Geobacter sulfurreducens PCA]
gi|298505803|gb|ADI84526.1| transcription termination factor NusB [Geobacter sulfurreducens
KN400]
Length = 138
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R + R A+Q LY D ++ + +
Sbjct: 1 MGARRLGRELALQMLYSRDYAAGEAAPLLELVLD----------ESEPGAAAGRSFADDL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ +Q ID I+ ++ WS R+ + SILR + EL+ +P V I+E +
Sbjct: 51 VRGVLEHRQEIDTAIT-GASKNWSIGRMARVDLSILRMAMYELLFRSDIPKNVTINEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F D P FIN +LD+++
Sbjct: 110 VAKKFGTEDSPAFINGILDEIA 131
>gi|300854298|ref|YP_003779282.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
gi|300434413|gb|ADK14180.1| nusB-like protein [Clostridium ljungdahlii DSM 13528]
Length = 158
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE----------SVYLHV 64
R +R ++ L+++ I +++ E + + +V
Sbjct: 2 NRKKSRELIMKLLFEMSINREDFRSVLANLEDNLEKKIESKETDGAEEVYSENIDKLKNV 61
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D+E+ + ++ G+ + K +D I L W+ +RL + +ILR E + +P +
Sbjct: 62 DMEYVKRVVKGIEENKDSLDKEIEKYL-RNWTLNRLPKVDAAILRICTYEFLYEQDIPEK 120
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V I+E + +A + FIN VL + + + I +
Sbjct: 121 VSINEAIELAKKYSSEKSAPFINGVLGNMIKDKSISKQ 158
>gi|89901446|ref|YP_523917.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
gi|119390807|sp|Q21V17|NUSB_RHOFD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|89346183|gb|ABD70386.1| NusB antitermination factor [Rhodoferax ferrireducens T118]
Length = 177
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 14/160 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T +K S R AR A+QALYQ + + ++I D + +
Sbjct: 22 TSTGARKAGSKSD-RSRAREFALQALYQSLVGKNTVSDI-----------DAFTRDLAGF 69
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D F ++ G ++ +D F+ + I SI+ G EL C V
Sbjct: 70 SKADSLHFDTLLQGCTEQAAALDA--LLLPLLDRKFAEISPIEHSIMWIGAFELQHCLDV 127
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P V+++E V +A +F D K++NAVL+ ++
Sbjct: 128 PWRVVLNECVELAKEFGGTDGHKYVNAVLNSLAPSLRAAE 167
>gi|184155740|ref|YP_001844080.1| transcription antitermination protein NusB [Lactobacillus fermentum
IFO 3956]
gi|238692985|sp|B2GD68|NUSB_LACF3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|183227084|dbj|BAG27600.1| transcription termination factor [Lactobacillus fermentum IFO 3956]
Length = 139
Score = 96.0 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ +R R A Q L+ + ++ + E E V +
Sbjct: 1 MTFKRRRIREVAFQTLFAM------VSDPEVDREQLYKELLPLAPQEEV-----PAYLEE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + + D I L WS SR++ ILR + E+ VPV V I E +
Sbjct: 50 LVTGVSEHQAEFDQEIEGSLAAGWSLSRVEKPNLIILRLALYEMKYVDDVPVAVAIDEAL 109
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+ F KFIN VL +
Sbjct: 110 EMTKKFSDDKSRKFINGVLGHI 131
>gi|15615348|ref|NP_243651.1| transcription antitermination protein NusB [Bacillus halodurans
C-125]
gi|20139208|sp|Q9K965|NUSB_BACHD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|10175406|dbj|BAB06504.1| transcriptional terminator [Bacillus halodurans C-125]
Length = 134
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++RL AVQALYQ+D+I S + I + ++
Sbjct: 2 NRRLSRLRAVQALYQMDVIDTSMEKAIESVLDE--------------GEEASSFMSDLVS 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ++ + + + + W+ R+ + +ILR + EL +P V +E + +A
Sbjct: 48 GTVTHQEEL-DRLYADHLQGWTVDRIGNVDRAILRMALYELYYVDDIPKNVSFNEAIELA 106
Query: 135 HDFFYGDEPKFINAVLDK 152
F D +FIN VL K
Sbjct: 107 KAFGGEDAGRFINGVLSK 124
>gi|170288851|ref|YP_001739089.1| NusB antitermination factor [Thermotoga sp. RQ2]
gi|281412471|ref|YP_003346550.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
gi|238688836|sp|B1LAQ8|NUSB_THESQ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|170176354|gb|ACB09406.1| NusB antitermination factor [Thermotoga sp. RQ2]
gi|281373574|gb|ADA67136.1| NusB antitermination factor [Thermotoga naphthophila RKU-10]
Length = 142
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R RLA +AL+Q + +I+ E + Y E R
Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKEDAR 48
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+EV I E
Sbjct: 49 RYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEVTIDEA 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ IA + + KF+N +LD+++++ K
Sbjct: 108 IEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138
>gi|254434713|ref|ZP_05048221.1| transcription antitermination factor NusB [Nitrosococcus oceani
AFC27]
gi|207091046|gb|EDZ68317.1| transcription antitermination factor NusB [Nitrosococcus oceani
AFC27]
Length = 136
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q LYQ ++G +I E+ +D +F+ ++ GV R+ +
Sbjct: 1 MQGLYQWQLMGQDVDKIDIEFIV------------QDIRGIDHAYFQELLRGVPQRQGEL 48
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D + L + +D + C+ILR G EL+ +P V+++E + +A F
Sbjct: 49 DECLGPFLDR--PINEVDPVECAILRIGAFELLCRPEIPYRVVLNEAIELAKRFGAEHGH 106
Query: 144 KFINAVLDKVSRKEEIKR 161
+++N +LDKV++K
Sbjct: 107 RYVNGILDKVAQKVRATE 124
>gi|328881138|emb|CCA54377.1| Transcription termination protein NusB [Streptomyces venezuelae
ATCC 10712]
Length = 145
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G S +++++ D + V ++ +
Sbjct: 1 MAARSKARKRAFQILFEADQRGASVQQVLADQVRLARSDDRQPPVS--------DFTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ID LI + W R+ + +I+R G E+I P V I E V
Sbjct: 53 VEGYAAHVARIDELI-ATYAVDWDLDRMPVADRNIVRLGAYEVIWEDGTPDAVAIDEAVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L +
Sbjct: 112 LAKEFSTDESPTFVNGLLARF 132
>gi|288957855|ref|YP_003448196.1| N utilization substance protein B [Azospirillum sp. B510]
gi|288910163|dbj|BAI71652.1| N utilization substance protein B [Azospirillum sp. B510]
Length = 196
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQID+ ++ E+ +R + + ++ D + F I+ G + R+ +D ++
Sbjct: 53 YQIDLAQAPVENVVGEFVAHRLGEEIDG---DKFVAGDPQLFADIVRGAIHRRAEVDGVL 109
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L ++ RL+++L +ILRAG E+ ++ISEYV +A FF G EP +N
Sbjct: 110 GAALDPRFPLDRLELLLRAILRAGAYEIAVHLDTHPRILISEYVDVARAFFSGREPAMVN 169
Query: 148 AVLDKVSRKEEIKRSGCVSA 167
VLD V+R
Sbjct: 170 GVLDHVARALRADDLAKPDP 189
>gi|311086765|gb|ADP66846.1| transcription antitermination protein NusB [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
Length = 143
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A+Q LY +I + E + E ++D+ +F
Sbjct: 1 MKPSF-RRKARACALQVLYSWEISHNNIKESAIYFL-----------KEKNKKNIDIVYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+I G+ ++ID L+ S L I +ILR EL + + +P +V I+E
Sbjct: 49 YELIIGITYDCKNIDNLMKPY--LFRSLKELGHIERAILRISFYELHKRNDIPYKVSINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
+ +A F D KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129
>gi|299139121|ref|ZP_07032297.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
gi|298598801|gb|EFI54963.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX8]
Length = 141
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+Q L+Q D+ E+ + R D E F
Sbjct: 1 MGTRRKSRELAMQMLFQGDLGKQKPEEVEELFWASREDVDDETRG-----------FADD 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+H + +++ + + W R+ ++ ++LR V E++ P VII+E +
Sbjct: 50 LHRLATQREDEVDALIQKHAQNWRLERMPVVDRNLLRTAVAEMVGYPKTPAAVIINETLE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
IA + + F+N VLD + R+
Sbjct: 110 IARRYAAPESIHFLNGVLDAIGREL 134
>gi|169831743|ref|YP_001717725.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
gi|169638587|gb|ACA60093.1| sun protein [Candidatus Desulforudis audaxviator MP104C]
Length = 452
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ G Y A E +D + + +G +
Sbjct: 6 AREIALHVLKAVEADG-----------AYANLALNRALEEFRPSKLDRAFATELAYGTLR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D ++S + + +ILR G +L VP E V +A +
Sbjct: 55 TLNTLDWIVSRY--LQQPLGDQTVWSRNILRLGAYQLFYMDKVPAGAACFEAVELAKKYG 112
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+F+N VL V+R ++
Sbjct: 113 TPGTARFVNGVLRNVARHKDE 133
>gi|302866812|ref|YP_003835449.1| transcription antitermination factor NusB [Micromonospora
aurantiaca ATCC 27029]
gi|315503227|ref|YP_004082114.1| nusb antitermination factor [Micromonospora sp. L5]
gi|302569671|gb|ADL45873.1| transcription antitermination factor NusB [Micromonospora
aurantiaca ATCC 27029]
gi|315409846|gb|ADU07963.1| NusB antitermination factor [Micromonospora sp. L5]
Length = 144
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ R AR A+ L++ D+ E+++ Y + L +
Sbjct: 5 PKQQMPARRKARKRALDVLFEADLRDRPPVEVLAGYLERIEQPRPDH----------LGY 54
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ GV ID I+S E W+ R+ ++ ++ R V EL+ + V IS
Sbjct: 55 AVGLVEGVAAHLDRIDETIASY-AEGWTLERMPVVDRNLARIAVYELLYVDEIDDAVAIS 113
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A D P+F+N +L +++
Sbjct: 114 EAVELARQMSTDDSPRFLNGILGRIA 139
>gi|222055768|ref|YP_002538130.1| NusB antitermination factor [Geobacter sp. FRC-32]
gi|254772641|sp|B9M1E7|NUSB_GEOSF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|221565057|gb|ACM21029.1| NusB antitermination factor [Geobacter sp. FRC-32]
Length = 145
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+QALY D T + + + + +
Sbjct: 1 MSSRREGRELALQALYSSDAESLGGTFALKKIMDNFA---DGSEPSLDVHGRSFTFATEL 57
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV+ + ID I ++ WS +R+ + +ILR V EL +P V I+E +
Sbjct: 58 VNGVLSNSEAIDRKIEEK-SKNWSIARMAKVDLNILRLAVFELFYRPDIPKNVTINEAIE 116
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F D P FIN +LD+++ K
Sbjct: 117 VAKKFGAEDSPAFINGILDEIASSLPDKE 145
>gi|146297126|ref|YP_001180897.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|254772620|sp|A4XLC1|NUSB_CALS8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145410702|gb|ABP67706.1| NusB antitermination factor [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 142
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
H+R R ++ LY I EL+ + + +D E+ + +
Sbjct: 1 MHKRRKTRELCMKILYAYRFQNNEYDII------EFLNKFKELNPDENFKEIDEEYLKKL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ +Q ID LI ++ W SR+ M+ ++R + EL+ +P+ V I E V
Sbjct: 55 LTGVIRNQQLIDNLIEKY-SKDWPLSRIPMVELELMRIAIYELLFEEEIPISVAIDEAVD 113
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
++ F P F+N +L ++
Sbjct: 114 LSSIFGVEKAPSFVNGILGSIA 135
>gi|289523061|ref|ZP_06439915.1| transcription antitermination factor NusB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503604|gb|EFD24768.1| transcription antitermination factor NusB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 151
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 14 HRRGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+Q LY +DI + E ++ + + + +
Sbjct: 4 QQRRRAREIALQLLYALDIRNDQTPDEAMALF------------PFDGESEEVMNYAIWL 51
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + ++ ID LI W R+ + +R + E + VP+ V ISE +
Sbjct: 52 VKEIWGKRVEIDNLI-RMHITGWRPERMVTVDLEAIRLALFEGVYSKVVPIPVAISEAIE 110
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A F + +F+N VL K+ R
Sbjct: 111 LAKRFGTENSGRFVNGVLGKIVR 133
>gi|116515210|ref|YP_802839.1| hypothetical protein BCc_285 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285394|sp|Q057F3|NUSB_BUCCC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116257064|gb|ABJ90746.1| transcription termination [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 142
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R AR A+Q LY I F + + ++ +D +F
Sbjct: 1 MKSKRRKARELAIQVLYSWQISKKIV----------LFETEKYVIEQNKKYSLDKIYFHK 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ GV+ +ID +I +++K + RLD I +ILR E+I+ +P +VII+E +
Sbjct: 51 IVTGVIKNIFYIDKIIKKNISKKKN--RLDYIEQAILRLASYEIIKRLDIPYKVIINEGI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + KFIN++LDK+ + +
Sbjct: 109 ELAKIYGSNKSHKFINSILDKIITNKNNIK 138
>gi|218961705|ref|YP_001741480.1| N utilization substance protein B [Candidatus Cloacamonas
acidaminovorans]
gi|167730362|emb|CAO81274.1| N utilization substance protein B [Candidatus Cloacamonas
acidaminovorans]
Length = 153
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 4/147 (2%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--VDLEWFR 70
+R AR AVQ LY ++ L +
Sbjct: 1 MGQRRKAREMAVQCLYSLEFSEVEKDYREYGLLNEYPDILLSLAEAEHIQPNSPVYAFAD 60
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ + + ++ I ++ W + ++ SIL EL+ P V+I+E
Sbjct: 61 ELVKNTIINIEQVESEIDKL-SDNWELEDIALLDRSILCLAAYELLFTD-TPAPVVINEA 118
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ IA F KFIN +LD ++++
Sbjct: 119 IEIAKKFSSEASGKFINGILDALNKEI 145
>gi|309378212|emb|CBX23156.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 141
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI S + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------SDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAAEYIRQIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPNEP 138
>gi|193214990|ref|YP_001996189.1| sun protein [Chloroherpeton thalassium ATCC 35110]
gi|193088467|gb|ACF13742.1| sun protein [Chloroherpeton thalassium ATCC 35110]
Length = 443
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AVQAL ++++ + ++ + + VD + I++G +
Sbjct: 3 KAREIAVQALREVEVNHAKSDTALNHF-----------FSITALEPVDRAFTMQIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ID +I + + ++D+ + +ILR G +L+ VP ++E V +A
Sbjct: 52 REKMKIDHVIKQFY--RHDYDKMDIDVKNILRIGAYQLLFLSKVPRWAAVNESVELAKKL 109
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+N VL +S E
Sbjct: 110 KGQFLGNLVNGVLRNISNNLE 130
>gi|25008871|sp|Q8K9A2|NUSB_BUCAP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21623355|gb|AAM67990.1| N utilization substance protein B [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 138
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q LY +I + + E+ E ++D+ +F +I G
Sbjct: 8 RRKARACALQMLYSWEISQNNIKDSAIEFL-----------KEKNKKNIDIIYFYELIIG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + ID L+ L+ S L I +ILR EL + +P +V I+E + +A
Sbjct: 57 ITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKVSINEGIELAK 114
Query: 136 DFFYGDEPKFINAVLDKVS 154
F D KFIN VLDK +
Sbjct: 115 LFGSEDSHKFINGVLDKAA 133
>gi|189424280|ref|YP_001951457.1| NusB antitermination factor [Geobacter lovleyi SZ]
gi|238692133|sp|B3E757|NUSB_GEOLS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189420539|gb|ACD94937.1| NusB antitermination factor [Geobacter lovleyi SZ]
Length = 142
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q LY D + S + + + E+ ++ G
Sbjct: 4 RREARELALQMLYAQDTLQGSLRDTLRGF-----------REGVETGERTREFAEALVQG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
VM+ ++ ID I + ++ W+ SR+ + +I+R EL+ +P +V I+E + IA
Sbjct: 53 VMEHREAIDQAIVAR-SKNWALSRMPRVDLNIMRMAAYELMFKRDIPKKVSINEAIEIAK 111
Query: 136 DFFYGDEPKFINAVLDKV 153
+ + P F+N +LD++
Sbjct: 112 KYGDKESPAFVNGILDEL 129
>gi|68536104|ref|YP_250809.1| transcription antitermination protein NusB [Corynebacterium
jeikeium K411]
gi|119390762|sp|Q4JVG6|NUSB_CORJK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|68263703|emb|CAI37191.1| N utilization substance protein B [Corynebacterium jeikeium K411]
Length = 202
Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 1 MTIQ---DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
MT + DNK S +R AR AV L++ + EI+ E + +
Sbjct: 1 MTEERTADNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSAN 60
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
++ E+ + I+ GV +D I+ L+ W RL + ++LR
Sbjct: 61 QV-------KPVPEYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAW 113
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
EL VP +V + E V +A ++ + P +I+AVLD +++ +++
Sbjct: 114 ELKFNDDVPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINKDLQLQ 160
>gi|218767806|ref|YP_002342318.1| transcription antitermination protein NusB [Neisseria meningitidis
Z2491]
gi|296315043|ref|ZP_06864984.1| transcription antitermination factor NusB [Neisseria polysaccharea
ATCC 43768]
gi|313668841|ref|YP_004049125.1| RNA polymerase antitermination factor [Neisseria lactamica ST-640]
gi|22095968|sp|Q9JVD5|NUSB_NEIMA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|121051814|emb|CAM08120.1| putative RNA polymerase antitermination factor [Neisseria
meningitidis Z2491]
gi|296838251|gb|EFH22189.1| transcription antitermination factor NusB [Neisseria polysaccharea
ATCC 43768]
gi|313006303|emb|CBN87766.1| putative RNA polymerase antitermination factor [Neisseria lactamica
020-06]
gi|319410056|emb|CBY90390.1| N utilization substance protein B (NusB protein) [Neisseria
meningitidis WUE 2594]
Length = 141
Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------PDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAAEYIRQIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 138
>gi|84688074|ref|ZP_01015933.1| putative N utilization substance protein B [Maritimibacter
alkaliphilus HTCC2654]
gi|84663924|gb|EAQ10429.1| putative N utilization substance protein B [Rhodobacterales
bacterium HTCC2654]
Length = 168
Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 3 IQDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
K+ + +R +RL AVQAL+Q++ G + E+E +RF A+ E
Sbjct: 9 TDRPKRKMTPELKRRMKSASRLYAVQALFQMEAAGQGYDRVRKEFEDHRFGAEYEEG--- 65
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ +++ FR I+ +DR+ ID + L KW +R+D L ++ RA EL+
Sbjct: 66 EFEEGNVDLFRAILGEAVDRQAKIDQMTDRALVAKWPIARIDPTLRALFRAAGAELVLGD 125
Query: 120 SVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIK 160
P +V+I E+V +A FF EPKF NAVLD ++R+ +
Sbjct: 126 -TPPKVVIVEFVEVAKAFFPEGHEPKFTNAVLDHMAREARPE 166
>gi|30264257|ref|NP_846634.1| transcription antitermination protein NusB [Bacillus anthracis str.
Ames]
gi|47529700|ref|YP_021049.1| transcription antitermination protein NusB [Bacillus anthracis str.
'Ames Ancestor']
gi|47569441|ref|ZP_00240122.1| transcription antitermination factor nusB [Bacillus cereus G9241]
gi|49187084|ref|YP_030336.1| transcription antitermination protein NusB [Bacillus anthracis str.
Sterne]
gi|49478572|ref|YP_038243.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141314|ref|YP_085515.1| transcription antitermination protein NusB [Bacillus cereus E33L]
gi|65321567|ref|ZP_00394526.1| COG0781: Transcription termination factor [Bacillus anthracis str.
A2012]
gi|118479373|ref|YP_896524.1| transcription antitermination protein NusB [Bacillus thuringiensis
str. Al Hakam]
gi|165873007|ref|ZP_02217629.1| N utilization substance protein B [Bacillus anthracis str. A0488]
gi|167634649|ref|ZP_02392969.1| N utilization substance protein B [Bacillus anthracis str. A0442]
gi|167638629|ref|ZP_02396905.1| N utilization substance protein B [Bacillus anthracis str. A0193]
gi|170687525|ref|ZP_02878742.1| N utilization substance protein B [Bacillus anthracis str. A0465]
gi|170709044|ref|ZP_02899474.1| N utilization substance protein B [Bacillus anthracis str. A0389]
gi|177654829|ref|ZP_02936586.1| N utilization substance protein B [Bacillus anthracis str. A0174]
gi|190565849|ref|ZP_03018768.1| N utilization substance protein B [Bacillus anthracis
Tsiankovskii-I]
gi|196034887|ref|ZP_03102294.1| N utilization substance protein B [Bacillus cereus W]
gi|196041593|ref|ZP_03108885.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
gi|196046394|ref|ZP_03113620.1| N utilization substance protein B [Bacillus cereus 03BB108]
gi|206976312|ref|ZP_03237220.1| N utilization substance protein B [Bacillus cereus H3081.97]
gi|217961672|ref|YP_002340242.1| transcription antitermination protein NusB [Bacillus cereus AH187]
gi|218905318|ref|YP_002453152.1| N utilization substance protein B [Bacillus cereus AH820]
gi|222097628|ref|YP_002531685.1| transcription antitermination protein nusb [Bacillus cereus Q1]
gi|225866164|ref|YP_002751542.1| N utilization substance protein B [Bacillus cereus 03BB102]
gi|227816958|ref|YP_002816967.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
gi|228916818|ref|ZP_04080383.1| N utilization substance protein B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929228|ref|ZP_04092255.1| N utilization substance protein B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935505|ref|ZP_04098323.1| N utilization substance protein B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947899|ref|ZP_04110186.1| N utilization substance protein B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229031831|ref|ZP_04187819.1| N utilization substance protein B [Bacillus cereus AH1271]
gi|229123702|ref|ZP_04252897.1| N utilization substance protein B [Bacillus cereus 95/8201]
gi|229604290|ref|YP_002868476.1| N utilization substance protein B [Bacillus anthracis str. A0248]
gi|254683946|ref|ZP_05147806.1| transcription antitermination protein NusB [Bacillus anthracis str.
CNEVA-9066]
gi|254721781|ref|ZP_05183570.1| transcription antitermination protein NusB [Bacillus anthracis str.
A1055]
gi|254736294|ref|ZP_05194000.1| transcription antitermination protein NusB [Bacillus anthracis str.
Western North America USA6153]
gi|254741332|ref|ZP_05199019.1| transcription antitermination protein NusB [Bacillus anthracis str.
Kruger B]
gi|254754034|ref|ZP_05206069.1| transcription antitermination protein NusB [Bacillus anthracis str.
Vollum]
gi|254757905|ref|ZP_05209932.1| transcription antitermination protein NusB [Bacillus anthracis str.
Australia 94]
gi|301055675|ref|YP_003793886.1| transcription antitermination protein NusB [Bacillus anthracis CI]
gi|39931872|sp|Q81M49|NUSB_BACAN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81613591|sp|Q6HDY3|NUSB_BACHK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81686283|sp|Q635A2|NUSB_BACCZ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215664|sp|A0RIH4|NUSB_BACAH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226737438|sp|B7JM33|NUSB_BACC0 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226738895|sp|B7HNU5|NUSB_BACC7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772611|sp|C3P7W1|NUSB_BACAA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772612|sp|C3LJV6|NUSB_BACAC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772613|sp|C1ERQ5|NUSB_BACC3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772614|sp|B9IXH5|NUSB_BACCQ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|30258902|gb|AAP28120.1| N utilization substance protein B [Bacillus anthracis str. Ames]
gi|47504848|gb|AAT33524.1| N utilization substance protein B [Bacillus anthracis str. 'Ames
Ancestor']
gi|47553856|gb|EAL12226.1| transcription antitermination factor nusB [Bacillus cereus G9241]
gi|49181011|gb|AAT56387.1| N utilization substance protein B [Bacillus anthracis str. Sterne]
gi|49330128|gb|AAT60774.1| N utilization substance protein B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974783|gb|AAU16333.1| N utilization substance protein B [Bacillus cereus E33L]
gi|118418598|gb|ABK87017.1| N utilization substance protein B [Bacillus thuringiensis str. Al
Hakam]
gi|164711290|gb|EDR16845.1| N utilization substance protein B [Bacillus anthracis str. A0488]
gi|167513477|gb|EDR88847.1| N utilization substance protein B [Bacillus anthracis str. A0193]
gi|167530101|gb|EDR92836.1| N utilization substance protein B [Bacillus anthracis str. A0442]
gi|170126071|gb|EDS94968.1| N utilization substance protein B [Bacillus anthracis str. A0389]
gi|170668720|gb|EDT19466.1| N utilization substance protein B [Bacillus anthracis str. A0465]
gi|172080490|gb|EDT65576.1| N utilization substance protein B [Bacillus anthracis str. A0174]
gi|190562768|gb|EDV16734.1| N utilization substance protein B [Bacillus anthracis
Tsiankovskii-I]
gi|195992426|gb|EDX56387.1| N utilization substance protein B [Bacillus cereus W]
gi|196022864|gb|EDX61545.1| N utilization substance protein B [Bacillus cereus 03BB108]
gi|196027581|gb|EDX66196.1| N utilization substance protein B [Bacillus cereus NVH0597-99]
gi|206745508|gb|EDZ56907.1| N utilization substance protein B [Bacillus cereus H3081.97]
gi|217067907|gb|ACJ82157.1| N utilization substance protein B [Bacillus cereus AH187]
gi|218539371|gb|ACK91769.1| N utilization substance protein B [Bacillus cereus AH820]
gi|221241686|gb|ACM14396.1| N utilization substance protein B [Bacillus cereus Q1]
gi|225785990|gb|ACO26207.1| N utilization substance protein B [Bacillus cereus 03BB102]
gi|227003150|gb|ACP12893.1| N utilization substance protein B [Bacillus anthracis str. CDC 684]
gi|228659837|gb|EEL15482.1| N utilization substance protein B [Bacillus cereus 95/8201]
gi|228729449|gb|EEL80438.1| N utilization substance protein B [Bacillus cereus AH1271]
gi|228811886|gb|EEM58220.1| N utilization substance protein B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824257|gb|EEM70071.1| N utilization substance protein B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830518|gb|EEM76128.1| N utilization substance protein B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843005|gb|EEM88088.1| N utilization substance protein B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268698|gb|ACQ50335.1| N utilization substance protein B [Bacillus anthracis str. A0248]
gi|300377844|gb|ADK06748.1| transcription antitermination protein NusB [Bacillus cereus biovar
anthracis str. CI]
gi|324328096|gb|ADY23356.1| transcription antitermination protein NusB [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 130
Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ K+ ID I L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VVGFVENKEVIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|332992370|gb|AEF02425.1| transcription antitermination protein NusB [Alteromonas sp. SN2]
Length = 140
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 60/150 (40%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A+Q +Y + +I + L + VD+ +F+
Sbjct: 2 KVSARRKARELALQGIYSWQMSHNDIQQI-----------ELALATSNDMKKVDMAYFQA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV H+D I L LD I +ILR LEL E VP VII+E +
Sbjct: 51 LLRGVAHSASHLDTTIKPYLGRLP--EELDAIEKAILRIATLELTERKDVPYRVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F + KFIN LDK R
Sbjct: 109 ELAKSFGAEESHKFINGALDKAVRSLRKDE 138
>gi|55821710|ref|YP_140152.1| transcription antitermination protein NusB [Streptococcus
thermophilus LMG 18311]
gi|55823630|ref|YP_142071.1| transcription antitermination protein NusB [Streptococcus
thermophilus CNRZ1066]
gi|116628433|ref|YP_821052.1| transcription antitermination protein NusB [Streptococcus
thermophilus LMD-9]
gi|81558964|sp|Q5LY62|NUSB_STRT1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81560152|sp|Q5M2R7|NUSB_STRT2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|122266972|sp|Q03IW6|NUSB_STRTD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|55737695|gb|AAV61337.1| transcriptional termination factor [Streptococcus thermophilus LMG
18311]
gi|55739615|gb|AAV63256.1| transcriptional termination factor [Streptococcus thermophilus
CNRZ1066]
gi|116101710|gb|ABJ66856.1| Transcription termination factor [Streptococcus thermophilus LMD-9]
gi|312279051|gb|ADQ63708.1| Transcription antitermination factor NusB [Streptococcus
thermophilus ND03]
Length = 144
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A Q L+ ++ G + + F + ++ + +
Sbjct: 6 KDSRRDLRERAFQTLFALEFGGEALDQA-------YFAYTYDKPIDEETEVDLPSFLLSL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + +D I L E WS SRL M ++LR G+ E+ P V I+E +
Sbjct: 59 VTGVREELPQLDSQIEEKLKEGWSLSRLIMTDRTLLRLGLYEITSFEETPGRVAINEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KFIN VL
Sbjct: 119 IAKKYSDKTSAKFINGVL 136
>gi|229093241|ref|ZP_04224359.1| N utilization substance protein B [Bacillus cereus Rock3-42]
gi|228690215|gb|EEL44009.1| N utilization substance protein B [Bacillus cereus Rock3-42]
Length = 130
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ K+ ID I L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VIGFVENKEVIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|15617061|ref|NP_240274.1| transcription antitermination protein NusB [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|11134003|sp|P57535|NUSB_BUCAI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|25299794|pir||H84983 N utilization substance protein B [imported] - Buchnera sp.
(strain APS)
gi|10039126|dbj|BAB13160.1| N utilization substance protein B [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 143
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K S R AR A+Q LY +I + E + E ++D+ +F
Sbjct: 1 MKPSF-RRKARACALQVLYSWEISHNNIKESAIYFL-----------KEKNKKNIDIVYF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+I G+ ++ID L+ S L I +ILR EL + + +P +V I+E
Sbjct: 49 YELIIGITYDCKNIDNLMKPY--LFRSLKELGHIERAILRISFYELHKRNDIPYKVSINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDK 152
+ +A F D KFIN VLDK
Sbjct: 107 GIELAKLFGSEDSHKFINGVLDK 129
>gi|295111308|emb|CBL28058.1| transcription antitermination factor NusB [Synergistetes bacterium
SGP1]
Length = 180
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 23/177 (12%)
Query: 9 DLKLSHRRGIAR------------LAAVQALYQIDII-GCSTTEIISEYETYRFCADTEL 55
+ + +R AVQ LY ++ G E + + CA+ E
Sbjct: 8 PARRAQSHHRSRQERGYAARRRARELAVQFLYSMECGPGQDLEEALELFLGAESCAEAE- 66
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
E+ R ++ G R+ +D ++ S +T W R+ + ++LR V E
Sbjct: 67 ------PPAVKEYCRALVRGTWSRRTEVDEVLLSVVTN-WRPERMVAVDRAVLRLAVFEG 119
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSGCVSAITQ 170
++P + ISE V +A F D +F+N VL +V R+ E ++ G +
Sbjct: 120 FLDCALPFKSAISEAVNLARSFGTEDSARFVNGVLARVVRRLIPEERKEGGADGQGE 176
>gi|304413734|ref|ZP_07395178.1| transcription termination factor [Candidatus Regiella insecticola
LSR1]
gi|304283825|gb|EFL92219.1| transcription termination factor [Candidatus Regiella insecticola
LSR1]
Length = 182
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
LY + +I S + + E VD+ +F ++ GV +D L
Sbjct: 17 LYSWQLSKNDIADIQSYFLS-----------EQDMKEVDINYFGQLLSGVAVDTATLDRL 65
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
++ L+ + L I +ILR V EL + +P +V+I+E + +A F D KF+
Sbjct: 66 MAPYLSRQ--IEDLGQIEKAILRLAVFELSQRDDIPYKVVINEAIELAKIFGAEDSHKFV 123
Query: 147 NAVLDKVS---RKEEIKRSGCVSAIT 169
N VLDK++ RK + + V T
Sbjct: 124 NGVLDKIAPIIRKRKQLNTSQVIPTT 149
>gi|163941940|ref|YP_001646824.1| transcription antitermination protein NusB [Bacillus
weihenstephanensis KBAB4]
gi|229013400|ref|ZP_04170537.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
gi|229061872|ref|ZP_04199202.1| N utilization substance protein B [Bacillus cereus AH603]
gi|229620056|sp|A9VGW4|NUSB_BACWK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|163864137|gb|ABY45196.1| NusB antitermination factor [Bacillus weihenstephanensis KBAB4]
gi|228717433|gb|EEL69101.1| N utilization substance protein B [Bacillus cereus AH603]
gi|228747812|gb|EEL97678.1| N utilization substance protein B [Bacillus mycoides DSM 2048]
Length = 130
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G +D K+ ID I L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VVGFVDNKEEIDAAIRQNLKK-WKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|171463084|ref|YP_001797197.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192622|gb|ACB43583.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 169
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 4 QDNKKDLKLS-HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+D K K S R AR A+Q +YQ ++ + + +L + +
Sbjct: 15 KDAKPSPKRSLTPRRRAREYALQGVYQSLVMRRAGSIP------NGAAIAKQLSEDPAFR 68
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
L+ F+ I GV+ R ++ +I+ + L + + L G EL SVP
Sbjct: 69 RCQLDLFQSIFDGVLARTDELEAIITP--ALDRPINELSPVEHAALLIGAYELAADLSVP 126
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+V I+E V +A F D K++N VLD +++K +
Sbjct: 127 YKVAINEAVELAKTFGGTDGHKYVNGVLDLLAQKLRTAET 166
>gi|42783301|ref|NP_980548.1| transcription antitermination protein NusB [Bacillus cereus ATCC
10987]
gi|81568850|sp|Q731B1|NUSB_BACC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|42739229|gb|AAS43156.1| N utilization substance protein B [Bacillus cereus ATCC 10987]
Length = 130
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKIAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ K+ ID I L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VVGFVENKEVIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|325283641|ref|YP_004256182.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
gi|324315450|gb|ADY26565.1| NusB antitermination factor [Deinococcus proteolyticus MRP]
Length = 185
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 6/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++ + R AR A +AL++ + ++ + + +
Sbjct: 1 MTR-RRERSAAPTGSRRAAREFAFRALFESERGELPLEQV---FMRTAAQMHEGDETLTP 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + R + G+ + + + WSF ++ ++LR E++
Sbjct: 57 LTPDAIAFARSLAEGLDMHWDEVQAALQRTI-RGWSFEQMAQTDLNVLRLAAFEMMFTPE 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V I V IA F D +F+N VL +SR E
Sbjct: 116 PHPPV-IESAVRIARKFGGEDSGRFVNGVLGTLSRSLE 152
>gi|264679471|ref|YP_003279378.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
gi|299530553|ref|ZP_07043973.1| NusB antitermination factor [Comamonas testosteroni S44]
gi|262209984|gb|ACY34082.1| NusB antitermination factor [Comamonas testosteroni CNB-2]
gi|298721529|gb|EFI62466.1| NusB antitermination factor [Comamonas testosteroni S44]
Length = 178
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+Q LYQ + + +I D + + D+
Sbjct: 27 RKAGSKSNRSRAREFALQGLYQHIVGRNAVLDI-----------DRFTRDLAGFHKADVV 75
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++ G ++ + +D LI+ L + + I + + GV E C VP V++
Sbjct: 76 HYDALLRGCVENEAALDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPDVPWRVVL 133
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+E + +A +F D K++NAVL+ ++ +
Sbjct: 134 NECIELAKEFGGTDGHKYVNAVLNGLAPELRATEVA 169
>gi|322412645|gb|EFY03553.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 149
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
+ R R A QAL+ +++ G +F D + V+ ++L + +
Sbjct: 7 NSRRDLRERAFQALFSMEMGG-------DFLVASQFAYDYDKVVDEGNEALELPIFLLNL 59
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV D K+ +D IS L WS RL + ++LR G+ E+ + P V ++E +
Sbjct: 60 VNGVNDHKEELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
+A + KFIN +L + +
Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143
>gi|30410822|ref|NP_660779.2| transcription antitermination protein NusB [Buchnera aphidicola
str. Sg (Schizaphis graminum)]
Length = 142
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 7 KKDLKLSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+K + + R AR A+Q LY +I + + E+ E ++D
Sbjct: 2 RKQMIIKPNFRRKARACALQMLYSWEISQNNIKDSAIEFL-----------KEKNKKNID 50
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ +F +I G+ + ID L+ L+ S L I +ILR EL + +P +V
Sbjct: 51 IIYFYELIIGITYNCRSIDDLMKPYLSR--SLKELGQIEKAILRISFYELYKRKDIPYKV 108
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E + +A F D KFIN VLDK +
Sbjct: 109 SINEGIELAKLFGSEDSHKFINGVLDKAA 137
>gi|260578799|ref|ZP_05846706.1| N utilization substance protein B family protein (protein NusB)
[Corynebacterium jeikeium ATCC 43734]
gi|258603097|gb|EEW16367.1| N utilization substance protein B family protein (protein NusB)
[Corynebacterium jeikeium ATCC 43734]
Length = 205
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 1 MTIQ---DNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
MT + DNK S +R AR AV L++ + EI+ E + +
Sbjct: 1 MTEERTADNKAAKAASFKRHGSRYKARRRAVDILFEAEFRDIDPVEIVEERISLAKDSAN 60
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
++ E+ + I+ GV +D I+ L+ W RL + ++LR
Sbjct: 61 QV-------KPVPEYTQQIVPGVATNLDALDEAIALHLSSDWQLDRLPAVDRAVLRVAAW 113
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
EL VP +V + E V +A ++ + P +I+AVLD +++ +++
Sbjct: 114 ELKFNDDVPPQVAVVEGVELASEYSHDKAPSYIHAVLDGINKDLQLQ 160
>gi|163848950|ref|YP_001636994.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
J-10-fl]
gi|163670239|gb|ABY36605.1| transcription antitermination factor NusB [Chloroflexus aurantiacus
J-10-fl]
Length = 153
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+L+ +R R+AA+Q L+++D + +++ T + E+ R
Sbjct: 7 RLASQRHRVRIAALQILFEVDETDHAIDQVLERRLT-----------DEPMSQESAEFLR 55
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH--SVPVEVIIS 128
++ G + + ++D +I W +++ + ++LR + EL+ P++ +I+
Sbjct: 56 RLVFGAWEHRSYLDRIIEEA-APNWPVAQMPGVDKAVLRIALFELLIDDVERTPIKAVIN 114
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F + +F+N VL V
Sbjct: 115 EAVELAKQFGSDNSSRFVNGVLGTVV 140
>gi|300909746|ref|ZP_07127207.1| transcription antitermination factor NusB [Lactobacillus reuteri
SD2112]
gi|300893611|gb|EFK86970.1| transcription antitermination factor NusB [Lactobacillus reuteri
SD2112]
Length = 141
Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 12/151 (7%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K+S R + R A Q L+ + +I + YE + ++ +
Sbjct: 3 KMSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIPP----------YLL 50
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E
Sbjct: 51 TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + F KFIN L K R+
Sbjct: 111 LELTKTFSSDKSRKFINGALGKFERQVNTNN 141
>gi|15676581|ref|NP_273725.1| transcription antitermination protein NusB [Neisseria meningitidis
MC58]
gi|261377912|ref|ZP_05982485.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
14685]
gi|261401063|ref|ZP_05987188.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
23970]
gi|304388064|ref|ZP_07370193.1| transcription antitermination factor NusB [Neisseria meningitidis
ATCC 13091]
gi|22095969|sp|Q9K0D0|NUSB_NEIMB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|7225910|gb|AAF41101.1| N utilization substance protein B [Neisseria meningitidis MC58]
gi|254673604|emb|CBA09124.1| N utilization substance protein B [Neisseria meningitidis alpha275]
gi|269145771|gb|EEZ72189.1| transcription antitermination factor NusB [Neisseria cinerea ATCC
14685]
gi|269208952|gb|EEZ75407.1| transcription antitermination factor NusB [Neisseria lactamica ATCC
23970]
gi|304337921|gb|EFM04061.1| transcription antitermination factor NusB [Neisseria meningitidis
ATCC 13091]
gi|316983655|gb|EFV62636.1| transcription antitermination factor NusB [Neisseria meningitidis
H44/76]
gi|325129787|gb|EGC52595.1| transcription antitermination factor NusB [Neisseria meningitidis
OX99.30304]
gi|325133802|gb|EGC56458.1| transcription antitermination factor NusB [Neisseria meningitidis
M13399]
gi|325139868|gb|EGC62399.1| transcription antitermination factor NusB [Neisseria meningitidis
CU385]
gi|325143929|gb|EGC66239.1| transcription antitermination factor NusB [Neisseria meningitidis
M01-240013]
gi|325200631|gb|ADY96086.1| transcription antitermination factor NusB [Neisseria meningitidis
H44/76]
gi|325203770|gb|ADY99223.1| transcription antitermination factor NusB [Neisseria meningitidis
M01-240355]
gi|325206473|gb|ADZ01926.1| transcription antitermination factor NusB [Neisseria meningitidis
M04-240196]
Length = 141
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R +R AVQA+YQ I + EI S + D E F
Sbjct: 1 MKTARRRSRELAVQAVYQSLINRTAAPEIAKNIREM-----------SDFAKADEELFNK 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G I L L+ I ++L EL P VII+E +
Sbjct: 50 LFFGTQTNAAEYIRQIRPLLDRDE--KDLNPIERAVLLTACHELSAMPETPYPVIINEAI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ F D KF+N +LDK++ +
Sbjct: 108 EVTKTFGGTDGHKFVNGILDKLAAQIRPDEP 138
>gi|114319541|ref|YP_741224.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
gi|119372274|sp|Q0ABQ3|NUSB_ALHEH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114225935|gb|ABI55734.1| NusB antitermination factor [Alkalilimnicola ehrlichii MLHE-1]
Length = 178
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCA------DTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
YQ + G I +++ D E + +D +FR ++HGV R
Sbjct: 29 YQWQMTGQDLGAIEAQHLEIDPEEPPVEAGDDEHYPRYPHDGLDRPYFRALLHGVPARLN 88
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D + L LD + ++LR G EL E P VII+E V +A F
Sbjct: 89 DLDQALEPLLDR--PLRTLDPLEKALLRLGAWELSERMDTPWRVIINEAVNLAKRFGAEQ 146
Query: 142 EPKFINAVLDKVSR 155
++IN VLDK++R
Sbjct: 147 SHRYINGVLDKLAR 160
>gi|299822999|ref|ZP_07054885.1| transcription antitermination factor NusB [Listeria grayi DSM
20601]
gi|299816528|gb|EFI83766.1| transcription antitermination factor NusB [Listeria grayi DSM
20601]
Length = 130
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+Q+++ S + + +V ++ + ++
Sbjct: 2 KRREAREVALQALFQMELNEMSFEQAV----------------SNVMPEEQDDYVKKLVS 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV K ID I + L W RL+ + SILR V E+ C +P V ++E + I+
Sbjct: 46 GVDTHKADIDTAIEAHLDN-WRKDRLNKVDLSILRLSVFEMKYCEDIPDRVSLNEAIEIS 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ KFIN VL + ++ + K
Sbjct: 105 KVYSDEKSSKFINGVLANIVQESDDK 130
>gi|30022264|ref|NP_833895.1| transcription antitermination protein NusB [Bacillus cereus ATCC
14579]
gi|206971091|ref|ZP_03232042.1| N utilization substance protein B [Bacillus cereus AH1134]
gi|218233314|ref|YP_002368985.1| transcription antitermination protein NusB [Bacillus cereus B4264]
gi|218899346|ref|YP_002447757.1| N utilization substance protein B [Bacillus cereus G9842]
gi|228902700|ref|ZP_04066847.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
gi|228910018|ref|ZP_04073838.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
gi|228922937|ref|ZP_04086231.1| N utilization substance protein B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228967223|ref|ZP_04128259.1| N utilization substance protein B [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228974275|ref|ZP_04134844.1| N utilization substance protein B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|296504671|ref|YP_003666371.1| transcription antitermination protein NusB [Bacillus thuringiensis
BMB171]
gi|39931865|sp|Q818R4|NUSB_BACCR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226737439|sp|B7IXH3|NUSB_BACC2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226737885|sp|B7HB53|NUSB_BACC4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|29897821|gb|AAP11096.1| N utilization substance protein B [Bacillus cereus ATCC 14579]
gi|206733863|gb|EDZ51034.1| N utilization substance protein B [Bacillus cereus AH1134]
gi|218161271|gb|ACK61263.1| N utilization substance protein B [Bacillus cereus B4264]
gi|218545985|gb|ACK98379.1| N utilization substance protein B [Bacillus cereus G9842]
gi|228785325|gb|EEM33335.1| N utilization substance protein B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792592|gb|EEM40158.1| N utilization substance protein B [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228836708|gb|EEM82055.1| N utilization substance protein B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228849535|gb|EEM94369.1| N utilization substance protein B [Bacillus thuringiensis IBL 200]
gi|228856887|gb|EEN01400.1| N utilization substance protein B [Bacillus thuringiensis IBL 4222]
gi|296325723|gb|ADH08651.1| transcription antitermination protein NusB [Bacillus thuringiensis
BMB171]
gi|326941963|gb|AEA17859.1| transcription antitermination protein [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 130
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ K+ ID I L + W R+ ++ SILR V E+ +P V I+E +
Sbjct: 47 VVGFVENKEAIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIE 105
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
IA F + +FIN VL +
Sbjct: 106 IAKTFGDEESRRFINGVLSNI 126
>gi|320352895|ref|YP_004194234.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
gi|320121397|gb|ADW16943.1| NusB antitermination factor [Desulfobulbus propionicus DSM 2032]
Length = 140
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCS--TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +R A+Q L+ D S ++ + + + L + R +I
Sbjct: 4 RRKSRELALQFLFSHDFQERSCAPDDVARDLDMF--------CQLFDVSQKALPYGRELI 55
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
G+ ++ ID L+ + + W R+ ++ +ILR V E+ C P +V I+E + I
Sbjct: 56 LGICRHREEIDALL-ATHSHNWRVERMSLVDRNILRIAVFEMRHCDQAPAQVAINEALEI 114
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
A + G+ FIN +LD +
Sbjct: 115 AKRYSIGESVSFINGILDAIQ 135
>gi|311030979|ref|ZP_07709069.1| transcription antitermination protein NusB [Bacillus sp. m3-13]
Length = 133
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 15/139 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +R A+QA++Q+D+ + E I+ D ++ I+
Sbjct: 2 KRSESRKKALQAIFQMDLSDIAPDEAITNVLEEGERPD--------------DFLSSIVF 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ++ ID + S L EKWS RL + +ILR V E++ +PV V ++E + +A
Sbjct: 48 GTKEHQEEIDSTLKSHL-EKWSLDRLGTVDRTILRMTVFEMMFVEEIPVNVSMNEAIELA 106
Query: 135 HDFFYGDEPKFINAVLDKV 153
F FINAVL KV
Sbjct: 107 KTFGDDKSSGFINAVLSKV 125
>gi|254507845|ref|ZP_05119975.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
16]
gi|323491732|ref|ZP_08096910.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
20546]
gi|323497970|ref|ZP_08102979.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
21326]
gi|219549218|gb|EED26213.1| transcription antitermination factor NusB [Vibrio parahaemolyticus
16]
gi|323314094|gb|EGA67180.1| transcription antitermination protein NusB [Vibrio brasiliensis LMG
20546]
gi|323317015|gb|EGA70017.1| transcription antitermination protein NusB [Vibrio sinaloensis DSM
21326]
Length = 155
Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV---YLHVDLEWFRVIIHGVMDRK 80
+QA+Y I + I ++ + + E D+ +FR ++ GV+
Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSTPDTDVAYFRDLLTGVVLSH 77
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D I LDM+ ++LR + E+ VP +V+I+E + +A F
Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 141 DEPKFINAVLDKVS 154
+ KF+N VLDK +
Sbjct: 136 ESHKFVNGVLDKAA 149
>gi|324998653|ref|ZP_08119765.1| NusB antitermination factor [Pseudonocardia sp. P1]
Length = 139
Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ + G + E+++ E+ E+ +
Sbjct: 1 MRARTKARKRALDILFEAEARGEAPLEVLTAR------------RETDDAPPVQEYAARL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV ++ ID L++ E W+ R+ + +LR GV EL+ V V I+E V
Sbjct: 49 VEGVATHRERIDQLLAEH-AEGWTVDRMPAVDRGLLRIGVYELLWVDDVDDPVAITEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A D P+++N VL ++S E R+
Sbjct: 108 LARTLSTDDSPRYVNGVLGQISDIAEHLRA 137
>gi|323127989|gb|ADX25286.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 149
Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
+ R R A QAL+ +++ G +F D + V+ ++L + +
Sbjct: 7 NSRRDLRERAFQALFSMEMGG-------DFLVASQFAYDYDKVVDEGNEALELPIFLLNL 59
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV D K+ +D IS L WS RL + ++LR G+ E+ + P V ++E +
Sbjct: 60 VNGVNDHKKELDRTISEHLKTGWSLERLTVTDKTLLRLGLFEIKYFNETPDRVALNEIIE 119
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
+A + KFIN +L + +
Sbjct: 120 VAKKYSDETSAKFINGLLSQFVSE 143
>gi|332799350|ref|YP_004460849.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
gi|332697085|gb|AEE91542.1| NusB antitermination factor [Tepidanaerobacter sp. Re1]
Length = 135
Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R IAR A + L+ ID+ + E +E+ +E + + +
Sbjct: 2 SRKIAREQAFKILFAIDVGNNTVEEA------------SEIVIEFLKDENQKSFILNEVR 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ +I +I + ++ WS R+ +ILR V ELI +P+ V I+E V IA
Sbjct: 50 GVLKNLSNI-DIIINKYSDDWSIDRMAATDRNILRLAVYELIYSQDIPISVSINEAVEIA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ KFIN +L ++
Sbjct: 109 KKYGDEHSYKFINGLLGSIAED 130
>gi|320105797|ref|YP_004181387.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
gi|319924318|gb|ADV81393.1| NusB antitermination factor [Terriglobus saanensis SP1PR4]
Length = 146
Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+Q L+Q D+ S+ ++ + R + ++ D + F
Sbjct: 1 MGTRRKSRELAMQMLFQADLGKQSSEDVQKSFWNAREDEAGKATID-----ADTQGFAED 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ V KQ + + W +R+ + ++LR V E+I S P +II+E +
Sbjct: 56 LFRVAMVKQEEIDTLLEEHAQNWRVARMAAVDRNLLRMAVAEMIGYPSTPHPIIINEALE 115
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
I + + F+N VLD V+R KR
Sbjct: 116 IGRRYAAPESVNFLNGVLDAVARALMAKRLA 146
>gi|228477148|ref|ZP_04061786.1| transcription antitermination factor NusB [Streptococcus salivarius
SK126]
gi|312863702|ref|ZP_07723940.1| transcription antitermination factor NusB [Streptococcus
vestibularis F0396]
gi|322516050|ref|ZP_08068987.1| transcription antitermination factor NusB [Streptococcus
vestibularis ATCC 49124]
gi|228251167|gb|EEK10338.1| transcription antitermination factor NusB [Streptococcus salivarius
SK126]
gi|311101238|gb|EFQ59443.1| transcription antitermination factor NusB [Streptococcus
vestibularis F0396]
gi|322125465|gb|EFX96811.1| transcription antitermination factor NusB [Streptococcus
vestibularis ATCC 49124]
Length = 144
Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A Q L+ ++ G + + F + ++ + +
Sbjct: 6 KDSRRDLRERAFQTLFALEFGGEALEQAH-------FAYTYDKPIDEETEVDVPAFLLSL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + +D I L E WS SRL + ++LR G+ E+ P V I+E +
Sbjct: 59 VTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KFIN VL
Sbjct: 119 IAKKYSDETSAKFINGVL 136
>gi|269795098|ref|YP_003314553.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
gi|269097283|gb|ACZ21719.1| NusB antitermination factor [Sanguibacter keddieii DSM 10542]
Length = 138
Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ + ++++ E ++ I
Sbjct: 1 MGARTKARKRALDVLFEAEQRHLDPITLLADRVA-----------EPGTEASLPQYSVDI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+++ ID L+ + +WS R+ + ++LR G E++ VP V I E V
Sbjct: 50 VEGVLEQLDRIDELL-ETYSHEWSLDRMPAVDRALLRIGTWEILFNDEVPDAVAIDEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
++ D P F+N +L ++
Sbjct: 109 LSRSLSTDDSPVFVNGLLGRIL 130
>gi|229543899|ref|ZP_04432958.1| NusB antitermination factor [Bacillus coagulans 36D1]
gi|229325038|gb|EEN90714.1| NusB antitermination factor [Bacillus coagulans 36D1]
Length = 132
Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+QAL+Q+D+ S + I + D + +
Sbjct: 1 MMKRRTAREKALQALFQMDMNEASPEDAIRNALDGQESDD---------------YLEKL 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++G ID +IS L E W+ RL + +ILR EL+ VP V I+E +
Sbjct: 46 VNGTATHLAEIDAMISQHL-ENWTLDRLAKVELNILRLAAYELMYAEDVPANVAINEALE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
IA F KFIN VL+++ E K
Sbjct: 105 IAKRFADEKSAKFINGVLNQMKDSIESK 132
>gi|302561734|ref|ZP_07314076.1| transcription antitermination factor NusB [Streptomyces
griseoflavus Tu4000]
gi|302479352|gb|EFL42445.1| transcription antitermination factor NusB [Streptomyces
griseoflavus Tu4000]
Length = 143
Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q +++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQIIFEGDQRGAEVLTVLADWIRHARSDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + ID LI + W+ R+ ++ SILR G ELI P V++ E V
Sbjct: 53 VEGYAEHAKRIDELIGQY-SVGWTLDRMPVVDRSILRLGAYELIWVDETPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L ++
Sbjct: 112 LAKEFSTDESPSFVNGLLGRL 132
>gi|148270186|ref|YP_001244646.1| transcription antitermination protein NusB [Thermotoga petrophila
RKU-1]
gi|166215727|sp|A5ILJ7|NUSB_THEP1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|147735730|gb|ABQ47070.1| NusB antitermination factor [Thermotoga petrophila RKU-1]
Length = 142
Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R RLA +AL+Q + +I+ E + Y E R
Sbjct: 1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKEDAR 48
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I G+ + ID LIS L EKWS +RL + ++LR EL+ +P+E I E
Sbjct: 49 RYIRGIKENLPMIDNLISRYL-EKWSLNRLSAVDRNVLRLATYELLFEKDIPIEATIDEA 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ IA + + KF+N +LD+++++ K
Sbjct: 108 IEIAKRYGTENSGKFVNGILDRIAKEHAPKE 138
>gi|160947152|ref|ZP_02094319.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
gi|158446286|gb|EDP23281.1| hypothetical protein PEPMIC_01084 [Parvimonas micra ATCC 33270]
Length = 134
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR ++ +YQ+ I + I + Y ++++ R
Sbjct: 3 RSEAREWCMKLIYQLSIHNNFKCDEIESFIEYF-----------DLPSSEVKYIRKNCKS 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++D +ID +I L W+++R+ I +ILR V E+ +P V I+E + IA+
Sbjct: 52 IIDNLDNIDNIIKENLEGCWNYNRIAKIDLAILRVAVNEIYYLDDIPESVAINEAIEIAN 111
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN +L + R ++
Sbjct: 112 KYSTDASYKFINGILGTIVRAKK 134
>gi|126653060|ref|ZP_01725195.1| transcription antitermination protein NusB [Bacillus sp. B14905]
gi|126590161|gb|EAZ84285.1| transcription antitermination protein NusB [Bacillus sp. B14905]
Length = 127
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+Q+D + E + + ++ I+
Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVT 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + +
Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127
>gi|187917985|ref|YP_001883548.1| transcription antitermination protein NusB [Borrelia hermsii DAH]
gi|119860833|gb|AAX16628.1| N utilization substance protein B [Borrelia hermsii DAH]
Length = 146
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R AR+ A Q +Y ID+ + I + D E D+ ++ V+
Sbjct: 3 MNLRHKARVLAFQKIYSIDVNCKAKDNIYDIFGLEDHGVDLEEDL--------KLFYSVL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYV 131
++G D + ID LI S ++ W R+D + +ILR V L VP VII E +
Sbjct: 55 VNGTCDNLESIDKLI-SDISLNWRLDRMDKVDLAILRVSVYSLKFQNLDVPKRVIIDEAI 113
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + + KF+N +LD + + E
Sbjct: 114 LIAKKYGSKNSYKFVNGILDALLKDME 140
>gi|325107333|ref|YP_004268401.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
gi|324967601|gb|ADY58379.1| NusB antitermination factor [Planctomyces brasiliensis DSM 5305]
Length = 137
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+Q L+ +D+ + + R + + + +
Sbjct: 1 MAKRSKARELAMQMLFLVDMNPDIDGKTVLHMIQDRLEDEQQS-----------RFAWTL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G M+ ++ ID IS + W+ R+ + ++LR G EL P V+I E +
Sbjct: 50 FAGTMEHRETIDDRISKV-AKNWTLKRMAVTDRNLLRLGCFELDYHD-TPHTVVIDEIIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A F + F+N +LDK++
Sbjct: 108 LAKKFGAENSSSFVNGILDKLA 129
>gi|197301786|ref|ZP_03166856.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
29176]
gi|197299226|gb|EDY33756.1| hypothetical protein RUMLAC_00512 [Ruminococcus lactaris ATCC
29176]
Length = 140
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+Q + E + E+ Y F D ++ +
Sbjct: 3 RTELREHIFKLLFQEEFNR---EEDMQEHLKYYFMTL------ENAADKDKDYIQEKYEA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ID LI+ + W +R++ + +ILR V E+ VPV V I+E V +A
Sbjct: 54 VAGHIAEIDELINQY-AKGWKTTRMNKVDLAILRLAVYEMKWDEEVPVGVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
F GD P FIN VL K++R + +
Sbjct: 113 RFSGGDSPSFINGVLGKIARSADGDET 139
>gi|330685971|gb|EGG97594.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU121]
Length = 128
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q++I T + ++ Y +D ++ ++
Sbjct: 2 SRKESRVQAFQTLFQLEIKDTDLT-----------IKEAINFIKDDYPDLDFDFINWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR E++ P +V+I+E V +A
Sbjct: 51 GVKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSD-TPAKVVINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KFIN VL +
Sbjct: 109 KQFSDDDHYKFINGVLSNI 127
>gi|299537762|ref|ZP_07051051.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZC1]
gi|298726741|gb|EFI67327.1| N utilization substance protein B-like protein [Lysinibacillus
fusiformis ZC1]
Length = 127
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+Q+D + E + + ++ I++
Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNAFYEKIVN 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + +
Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127
>gi|227544393|ref|ZP_03974442.1| transcription antitermination protein NusB [Lactobacillus reuteri
CF48-3A]
gi|227185656|gb|EEI65727.1| transcription antitermination protein NusB [Lactobacillus reuteri
CF48-3A]
Length = 138
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R + R A Q L+ + +I + YE + ++ +
Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIPP----------YLLT 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E +
Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F KFIN L K R+
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFERQVNTNN 138
>gi|150390542|ref|YP_001320591.1| sun protein [Alkaliphilus metalliredigens QYMF]
gi|149950404|gb|ABR48932.1| sun protein [Alkaliphilus metalliredigens QYMF]
Length = 444
Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR +A++ LY I+E E Y A + + VD + +++GV+
Sbjct: 2 KARESALKVLY-----------AITEQEAYSNIALNQQFRAETHTPVDKAFVTELVYGVV 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ ID +I T +++ S+LR + ++ VPV ++E V ++ +
Sbjct: 51 ENLIWIDYVIDQFSTT--KTIKMNPWTLSLLRLAIYQIFFLDRVPVFAAVNESVDLSKKY 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
FIN VL + RK+EI R
Sbjct: 109 C-KHTTAFINGVLRNILRKKEIIR 131
>gi|332286886|ref|YP_004418797.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
gi|330430839|gb|AEC22173.1| transcription antitermination protein NusB [Pusillimonas sp. T7-7]
Length = 166
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 9/141 (6%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +Y + G + D + + + D WF+ ++HGV+
Sbjct: 28 EFALQGVYAWLLRGDAG-------LQEAGEIDAHIRDDEEFHDADATWFKTLLHGVLREA 80
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ + L I IL G EL+ VP +V I+E V +A F
Sbjct: 81 PALRERFMPHVDR--PLEELSPIEHGILLIGSYELVHHIEVPYKVAINEAVELAKSFGGT 138
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D KF+N VLDK++ +
Sbjct: 139 DGFKFVNGVLDKMAADVRSQE 159
>gi|221065986|ref|ZP_03542091.1| NusB antitermination factor [Comamonas testosteroni KF-1]
gi|220711009|gb|EED66377.1| NusB antitermination factor [Comamonas testosteroni KF-1]
Length = 178
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R AR A+Q LYQ + + +I D + + D+
Sbjct: 27 RKAGSKSNRSRAREFALQGLYQHIVGRNAVLDI-----------DRFTRDLAGFHKADVV 75
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++ G ++ + +D LI+ L + + I + + GV E C VP V++
Sbjct: 76 HYDALLRGCVENEVSLDALITPKLDRG--LTEISPIEHACMWIGVYEFQNCPDVPWRVVL 133
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+E + +A +F D K++NAVL+ ++
Sbjct: 134 NECIELAKEFGGTDGHKYVNAVLNGLAPDLRATEVA 169
>gi|261253734|ref|ZP_05946307.1| transcription termination protein NusB [Vibrio orientalis CIP
102891]
gi|260937125|gb|EEX93114.1| transcription termination protein NusB [Vibrio orientalis CIP
102891]
Length = 155
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVIIHGVMDRK 80
+QA+Y I + I ++ + + E D+ +FR ++ GV+
Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHASEPALSAPDTDVAYFRDLLTGVVLSH 77
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D I LDM+ ++LR + E+ VP +V+I+E + +A F
Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 141 DEPKFINAVLDKVS 154
+ KF+N VLDK +
Sbjct: 136 ESHKFVNGVLDKAA 149
>gi|108804294|ref|YP_644231.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
gi|119390815|sp|Q1AW09|NUSB_RUBXD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|108765537|gb|ABG04419.1| NusB antitermination factor [Rubrobacter xylanophilus DSM 9941]
Length = 139
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A LYQ D+ G +I + YR + ++ ++
Sbjct: 2 SRRTARKQAFFILYQSDVTGSPAEPLIGRWRAYRGELE--------------DYAERVVR 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ +D ++ ++E W R+ + +ILR + E++ VP EV ++E V +A
Sbjct: 48 GVERERERLDAVL-DGVSEGWPVWRMSAVDRTILRLALYEMLHVQDVPPEVAVNEAVELA 106
Query: 135 HDFFYGDEPKFINAVLD 151
F + P F+ VL
Sbjct: 107 KGFSGEEAPSFVGGVLR 123
>gi|330466963|ref|YP_004404706.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
gi|328809934|gb|AEB44106.1| nusb antitermination factor [Verrucosispora maris AB-18-032]
Length = 144
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ R AR A+ L++ D+ E+++ Y L +
Sbjct: 5 PKQQMPARRKARKRALDVLFEADLRDRPPVEVLAGYIER----------IEKPRPDHLGY 54
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ GV ID LISS E W+ R+ ++ ++ R V EL+ + V IS
Sbjct: 55 AVGLVEGVAGHLDRIDELISSY-AEGWTLDRMPVVDRNLARIAVYELLYVDEIDDAVAIS 113
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A D P+F+N +L +++
Sbjct: 114 EAVELARQMSTDDSPRFLNGLLGRIA 139
>gi|239637666|ref|ZP_04678638.1| transcription antitermination factor NusB [Staphylococcus warneri
L37603]
gi|239596884|gb|EEQ79409.1| transcription antitermination factor NusB [Staphylococcus warneri
L37603]
Length = 128
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q++I T + ++ Y +D ++ ++
Sbjct: 2 SRKESRVQAFQTLFQLEIKDTDLT-----------IKEAINFIKDDYPDLDFDFINWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR E++ P +V+I+E V +A
Sbjct: 51 GVKDHEPVLDEKIKPYLKD-WSLERLLKTDRIILRMATFEILHSD-TPSKVVINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KFIN VL +
Sbjct: 109 KQFSDDDHYKFINGVLSNI 127
>gi|320547470|ref|ZP_08041756.1| transcription antitermination factor NusB [Streptococcus equinus
ATCC 9812]
gi|320447815|gb|EFW88572.1| transcription antitermination factor NusB [Streptococcus equinus
ATCC 9812]
Length = 142
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R R A QAL+ ++ F + +E + +
Sbjct: 6 TNSRRDLRERAFQALFSLEF-------DREYLAAAEFAYTYDKTIEEDEDVQVPVFLLNL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV D + +D I + L WS RL + S+LR G+ E+ P V ++E +
Sbjct: 59 VKGVCDMQAELDQQIEAHLKAGWSLERLTLTDKSLLRLGLYEVRYFEETPGRVAVNEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KF+N +L
Sbjct: 119 IAKKYSDETSAKFVNGLL 136
>gi|291296745|ref|YP_003508143.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
gi|290471704|gb|ADD29123.1| NusB antitermination factor [Meiothermus ruber DSM 1279]
Length = 152
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A + L++ + G + + + + V H L + + ++ G
Sbjct: 2 RRKARELAFKVLFEHAVGGVPLEAAWQHATQEVEPEEADQEAD-VLDHEGLLFAQRLVQG 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++Q +D ++S + E WSFS++ ++LR E++ P +I V IA
Sbjct: 61 YAAQQQTVDEALASTI-EGWSFSQMAKTDLAVLRLATYEMLF-EPTPYAPLIEVAVKIAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ D +F+N VL ++ ++ E V+
Sbjct: 119 RYGGEDSGRFVNGVLARLLKRIEAGELSAVAK 150
>gi|154498049|ref|ZP_02036427.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
29799]
gi|150273039|gb|EDN00196.1| hypothetical protein BACCAP_02030 [Bacteroides capillosus ATCC
29799]
Length = 223
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 4/149 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYET---YRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV +++ + E++ T + + E E+ +
Sbjct: 50 RTNAREIAVHLTFELSFTNQTADELLDTALTRATFALIGEEEPLYAEYPNAKQREYISEL 109
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV +D IS W+FSR+ I +++R + E++ VP I+E +
Sbjct: 110 VRGVYFHCPELDDYISRY-AIGWTFSRIPRIAVAVMRVAMYEILYMQDVPNAAAINEALE 168
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
IA + + FIN +L RKE I
Sbjct: 169 IAKGYETPEVVSFINGILGSFVRKESIPE 197
>gi|205374079|ref|ZP_03226879.1| transcription antitermination protein NusB [Bacillus coahuilensis
m4-4]
Length = 129
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+Q+D+ S E ++ D + ++
Sbjct: 2 KRHTAREKALQALFQMDMSQLSGQEALTNVTEESEMDD---------------YLSKLVL 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ID I L EKWSF RL + SILR V E++ VP +V I+E + +A
Sbjct: 47 QTETNLEVIDQKIRENL-EKWSFERLAKVDRSILRLTVCEMMFIEDVPNKVAINEAIELA 105
Query: 135 HDFFYGDEPKFINAVLDKVS 154
F KFINAVL KV
Sbjct: 106 KTFGDDQSSKFINAVLSKVQ 125
>gi|288553331|ref|YP_003425266.1| transcription antitermination protein NusB [Bacillus pseudofirmus
OF4]
gi|288544491|gb|ADC48374.1| transcription antitermination protein NusB [Bacillus pseudofirmus
OF4]
Length = 135
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +ARL A QALYQ+D+ G I E+F ++
Sbjct: 2 NRRLARLRAAQALYQMDLTGSEMESAIESVLE--------------DNEKQSEFFTQLVQ 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K ID IS+ L E W+ SR+ + +I+R + E++E +PV V +E + +A
Sbjct: 48 GTTELKTKIDETISANL-EGWTISRMGHVDRAIIRMAMYEMLEVEDIPVNVTFNEAIELA 106
Query: 135 HDFFYGDEPKFINAVLDK 152
F + +F+N VL K
Sbjct: 107 KAFGGEEAGRFVNGVLSK 124
>gi|332141882|ref|YP_004427620.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Deep ecotype']
gi|238693257|sp|B4RVY5|NUSB_ALTMD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|327551904|gb|AEA98622.1| transcription antitermination protein NusB [Alteromonas macleodii
str. 'Deep ecotype']
Length = 140
Score = 94.1 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A+Q +Y + ++ + L + VD+ +F+
Sbjct: 2 KVSARRKARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYFQA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV +D I L LD I +ILR LEL E VP VII+E +
Sbjct: 51 LLRGVAHNASKLDATIKPYLGRLP--EELDAIEKAILRIATLELTERIDVPYRVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F + KFIN LDK R
Sbjct: 109 ELAKAFGAEESHKFINGALDKAVRTLRKDE 138
>gi|312883802|ref|ZP_07743521.1| transcription antitermination protein NusB [Vibrio caribbenthicus
ATCC BAA-2122]
gi|309368551|gb|EFP96084.1| transcription antitermination protein NusB [Vibrio caribbenthicus
ATCC BAA-2122]
Length = 155
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV---YLHVDLEWFRVIIHGVMDRK 80
+QA+Y I + I ++ + + E + D+ +FR ++ GV+
Sbjct: 18 LQAIYSWQITKENVANIEEQFLSGDKYDEEEHHAQEPALSTPDTDVAYFRDLLTGVVLSH 77
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D I LDM+ ++LR + E+ VP +V+I+E + +A F
Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 141 DEPKFINAVLDKVS 154
+ KF+N VLDK +
Sbjct: 136 ESHKFVNGVLDKAA 149
>gi|312195541|ref|YP_004015602.1| NusB antitermination factor [Frankia sp. EuI1c]
gi|311226877|gb|ADP79732.1| NusB antitermination factor [Frankia sp. EuI1c]
Length = 135
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+ LY+ D+ S EI++ E+ +
Sbjct: 1 MSARSKSRKRALDILYEADLRSTSPLEILAAR-------------SVQNDPPVNEYTSGL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ V + ID I E W+ R+ + +ILR VLE++ VP V I E V
Sbjct: 48 VRDVTEHLGRIDGFIGEH-AEGWTLERMPAVDRNILRIAVLEMMWRDDVPDRVAIDEAVE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A P F+N +L +
Sbjct: 107 LAKSVSTDRSPAFVNGLLASLL 128
>gi|239993724|ref|ZP_04714248.1| transcription antitermination protein NusB [Alteromonas macleodii
ATCC 27126]
Length = 140
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A+Q +Y + ++ + L + VD+ +F+
Sbjct: 2 KVSARRKARELALQGVYSWQMSHNDIQQV-----------ELALATSNDMQKVDMAYFQA 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV +D I L LD I +ILR LEL E VP VII+E +
Sbjct: 51 LLRGVAHNASKLDTTIKPYLGRLP--EELDAIEKAILRIATLELTERIDVPYRVIINEAI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A F + KFIN LDK R
Sbjct: 109 ELAKAFGAEESHKFINGALDKAVRTLRKDE 138
>gi|282850140|ref|ZP_06259519.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294793653|ref|ZP_06758790.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
gi|282579633|gb|EFB85037.1| ribosomal RNA small subunit methyltransferase B [Veillonella
parvula ATCC 17745]
gi|294455223|gb|EFG23595.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
3_1_44]
Length = 451
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++++ RL AV+AL +I+ G Y E + +D +F
Sbjct: 5 KTNQQQNIRLLAVKALSEINRNG-----------AYANIKLQEYLQKYHLSDLDRRFFTE 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V
Sbjct: 54 LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+A F+NAVL V R+ + G ++
Sbjct: 112 KLAKKL-TRGLSGFVNAVLRSVLRESDSISIGELAK 146
>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
Length = 447
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ + +I+ +S +D +++GV+
Sbjct: 4 ARETALNVLQALETGKKRSDQILHRTLE-----------QSALNRIDRALATGLVNGVLR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +IS + +L +ILR G+ +++ VP ++E V +A +
Sbjct: 53 YRLQLDFIISRYY--HHKLEKAAPVLKNILRLGLYQILFLDKVPDWAAVNECVKLAKKYK 110
Query: 139 YGDEPKFINAVLDKV 153
K +N VL K+
Sbjct: 111 GDRMSKLVNGVLRKI 125
>gi|262376860|ref|ZP_06070087.1| transcription antitermination factor NusB [Acinetobacter lwoffii
SH145]
gi|262308205|gb|EEY89341.1| transcription antitermination factor NusB [Acinetobacter lwoffii
SH145]
Length = 149
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR AVQ +Y+ + EI + VE+ VDL ++ ++
Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQ 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + +D L+ L + S LD + + LR G EL E +P V++ E + +A
Sbjct: 61 VVANHEALDALLIPVLDRE--LSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K+IN VLD+++
Sbjct: 119 HFGGADSHKYINGVLDRLATTLRAAE 144
>gi|313681443|ref|YP_004059181.1| nusb antitermination factor [Sulfuricurvum kujiense DSM 16994]
gi|313154303|gb|ADR32981.1| NusB antitermination factor [Sulfuricurvum kujiense DSM 16994]
Length = 132
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+A V LY D+ + + E+ E + ++ +
Sbjct: 1 MATRHQARMAVVSLLYAYDLGNQTIAD-----------FSDEILEEKKIRNKQRDFALDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV + ID I L + W F RL I + LR G E++ + VII+E +
Sbjct: 50 FKGVTEHLSEIDEAIVKHLKD-WDFDRLGSIERATLRLGGYEIMFGE-LDSAVIINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+A F PKFIN VLD +S+ +
Sbjct: 108 VAKAFGSEQSPKFINGVLDAISKDK 132
>gi|303245564|ref|ZP_07331847.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
gi|302492827|gb|EFL52692.1| NusB antitermination factor [Desulfovibrio fructosovorans JJ]
Length = 177
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 6/161 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + + K R AR A + LY + E R A DV
Sbjct: 16 MPEEASHNGDKKPVSRRKARKQAFECLYGLIF-----ESAADERSLRRVFARCPHDVAEG 70
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
E+ ++ GV ++ +D I ++ W SR+ + +ILR V E++
Sbjct: 71 EDGSGQEFAWELVSGVWTNQRELDAHIVRF-SKNWKLSRIAKVELTILRLAVYEILYRSD 129
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P+ V ++E + +A + + FIN +LD +++ +
Sbjct: 130 IPLRVALNEAIELAKRYGDENSRNFINGILDAIAKAVDSGE 170
>gi|188586319|ref|YP_001917864.1| NusB antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229620365|sp|B2A534|NUSB_NATTJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|179351006|gb|ACB85276.1| NusB antitermination factor [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 139
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+++ ++Q+ E+ + D + + + ++ ++
Sbjct: 2 SRRTAREASMKLVFQMAFNDDHVDEVGA--------EDILAQAKEELNYNNYQYIETVVS 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
Q ID I +E W RL + SILR + E++ +P V I+E V +A
Sbjct: 54 RTESNLQKIDEYIEKF-SENWKIDRLSKVDLSILRLAISEILFFDDIPTRVSINEAVELA 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F +IN +LD+V+ + R
Sbjct: 113 KKFSTDKASGYINGILDQVANQLNKAR 139
>gi|294628337|ref|ZP_06706897.1| transcription antitermination factor NusB [Streptomyces sp. e14]
gi|292831670|gb|EFF90019.1| transcription antitermination factor NusB [Streptomyces sp. e14]
Length = 147
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGVGVLTVLADWVRLSRSDTRQPPVS--------EYTMQL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID L++ W+ R+ ++ +ILR G ELI P V++ E V
Sbjct: 53 VEGYAEHATRIDELLAQY-AVGWTLDRMPVVDRNILRLGAYELIWVDETPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L ++
Sbjct: 112 LAKEFSTDESPSFVNGLLGRL 132
>gi|251783265|ref|YP_002997570.1| transcription antitermination protein NusB [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391897|dbj|BAH82356.1| transcription antitermination protein [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 155
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE-WFRVI 72
+ R R A QAL+ +++ G +F D + V+ ++L + +
Sbjct: 13 NSRRDLRERAFQALFSMEMGG-------DFLVASQFAYDYDKVVDEGNEALELPIFLLNL 65
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++GV D K+ +D IS L WS RL M ++LR G+ E+ + P V ++E +
Sbjct: 66 VNGVNDHKEELDRTISEHLKTGWSLERLTMTDKTLLRLGLFEIKYFNETPDRVALNEIIE 125
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
+A + KFIN +L + +
Sbjct: 126 VAKKYSDETSAKFINGLLSQFVSE 149
>gi|217964495|ref|YP_002350173.1| transcription antitermination factor NusB [Listeria monocytogenes
HCC23]
gi|254829884|ref|ZP_05234539.1| transcription antitermination protein NusB [Listeria monocytogenes
10403S]
gi|254772645|sp|B8DFW9|NUSB_LISMH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|217333765|gb|ACK39559.1| transcription antitermination factor NusB [Listeria monocytogenes
HCC23]
gi|307570941|emb|CAR84120.1| transcription antitermination factor [Listeria monocytogenes L99]
Length = 128
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|260775291|ref|ZP_05884188.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608472|gb|EEX34637.1| transcription termination protein NusB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 155
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY---LHVDLEWFRVIIHGVMDRK 80
+QA+Y I + I ++ + + E D+ +FR ++ GV+
Sbjct: 18 LQAIYSWQITKENVATIEEQFLSGGKYDEEEHHAAEPALVAPDTDVAYFRDLLTGVVLSH 77
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+D I LDM+ ++LR + E+ VP +V+I+E + +A F
Sbjct: 78 TELDSKIRPYTAR--PMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAE 135
Query: 141 DEPKFINAVLDKVS 154
+ KF+N VLDK +
Sbjct: 136 ESHKFVNGVLDKAA 149
>gi|189499470|ref|YP_001958940.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
gi|238692264|sp|B3EM81|NUSB_CHLPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189494911|gb|ACE03459.1| NusB antitermination factor [Chlorobium phaeobacteroides BS1]
Length = 168
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY I++ G T + D+ + +++
Sbjct: 1 MKTYRRRIREKIIQALYTIELTGADMDSASDWLITPQIAEDSGA----------VRFYKQ 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + D K+ ID I+ T W SR+ +I +ILR + EL+ +P +V I+E +
Sbjct: 51 VLQSIQDHKEEIDGYITKH-TFNWDMSRIAIIDKNILRMALAELLYFEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLD 151
IA F KF+N +LD
Sbjct: 110 EIAKKFNSTDKSSKFVNGILD 130
>gi|169828975|ref|YP_001699133.1| N utilization substance protein B-like protein [Lysinibacillus
sphaericus C3-41]
gi|238688177|sp|B1HRY0|NUSB_LYSSC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|168993463|gb|ACA41003.1| N utilization substance protein B-like protein (NusB-like protein)
[Lysinibacillus sphaericus C3-41]
Length = 127
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+Q+D + E + + ++ I+
Sbjct: 2 KRHEAREKALQVLFQLDNTDLTVEEAMGHIK----------------GQPTNVFYEKIVT 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID + L EKWS +RL I ++LR V EL+ P V+++E + +
Sbjct: 46 GTAEHLEEIDATLEQHL-EKWSLARLPKIERTVLRLAVYELLYMPETPKRVVLNEAIELC 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F KF+N VL K + +E
Sbjct: 105 KTFGDDSSSKFVNGVLSKFTEQE 127
>gi|225869862|ref|YP_002745809.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. equi 4047]
gi|254772656|sp|C0MBK2|NUSB_STRE4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|225699266|emb|CAW92587.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. equi 4047]
Length = 150
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
H R R A QAL+ +++ G Y+ + AD + E + ++
Sbjct: 7 HSRRDLRERAFQALFAMEMGGDFLPASQFAYDYDKEAADDKQPSELPV------FLLNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E + I
Sbjct: 61 NGVMDHKAELDEVIKKNLKTSWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEI 120
Query: 134 AHDFFYGDEPKFINAVL 150
A + KFIN +L
Sbjct: 121 AKKYSDDTSAKFINGLL 137
>gi|149200420|ref|ZP_01877436.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
gi|149136489|gb|EDM24926.1| NusB antitermination factor [Lentisphaera araneosa HTCC2155]
Length = 156
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R + R A+Q LYQ DI E + E + R II
Sbjct: 8 NPRSLGRKWALQYLYQSDIAKLEFQEEEFALFIDQIENAPSAPNEHESSKG-FAFAREII 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+D+ + ID I+ + W R+ ++LR V EL+E S VI++E V +
Sbjct: 67 QGVLDKVKEIDAYITEE-AKNWKIDRMATTDRNVLRIAVFELMEIKSNHPVVIVNEAVEL 125
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
A F D KF+N + D ++RK +
Sbjct: 126 AKTFGNTDSFKFVNGIGDTLARKLRPEEM 154
>gi|300870191|ref|YP_003785062.1| transcription antitermination protein NusB [Brachyspira pilosicoli
95/1000]
gi|300687890|gb|ADK30561.1| transcription antitermination protein, NusB [Brachyspira pilosicoli
95/1000]
Length = 174
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
DL R AR+ AV ALY +I + + +
Sbjct: 36 DLSKYGTRRQARIYAVMALYSYEINEKKVN-----------INELFNFEYDDKKAANNSF 84
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ ++ G ++ Q ID +I ++ W+ SR+ + SI+R + LI +P VII
Sbjct: 85 TKELVEGTINNLQKIDSIIEKY-SKNWNISRIQYVDKSIIRMSIYSLIYLKDIPKSVIID 143
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E V IA F D KF+N +LD + ++
Sbjct: 144 EAVEIAKIFGDKDSYKFVNGILDAIQEED 172
>gi|147678123|ref|YP_001212338.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
gi|146274220|dbj|BAF59969.1| tRNA and rRNA cytosine-C5-methylases [Pelotomaculum
thermopropionicum SI]
Length = 456
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ + ++ G Y A ++ + +D + + +G +
Sbjct: 9 ARELALKVVNAVEEEG-----------AYANLALNQVLEKHRPGKLDRAFATELAYGTLR 57
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D ++ + + S + +ILR GV +L+ VP + +E +A +
Sbjct: 58 SLNTLDWVLEQFIKQ--PLSSQSRTVLNILRLGVYQLMFMDRVPPSAVCNEGAELARKYG 115
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ KF+N VL +SR+
Sbjct: 116 HAGTVKFVNGVLRNISRRLNE 136
>gi|157803349|ref|YP_001491898.1| transcription antitermination protein NusB [Rickettsia canadensis
str. McKiel]
gi|157784612|gb|ABV73113.1| transcription antitermination protein NusB [Rickettsia canadensis
str. McKiel]
Length = 178
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 11 KLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYL-HVDLEW 68
+++ IAR+AAVQA+YQ + I+ ++ ++ D+ + +
Sbjct: 26 NKINKKSIARIAAVQAMYQHILQDNQDMEYILQNVLSFYQNNNSITDLSENLKISLSISH 85
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F++++ V + +D +I + LT + + ++L ++ R + EL+ CH+ P +V+I+
Sbjct: 86 FKMLVKSVFENFNKLDEMIDNHLTNDKDPAHMPILLRALFRVSICELLFCHTTPAKVVIN 145
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
EY IA+D E F+N+VLDK++++ +
Sbjct: 146 EYTDIANDMLNEHEIGFVNSVLDKIAKENK 175
>gi|16800464|ref|NP_470732.1| transcription antitermination protein NusB [Listeria innocua
Clip11262]
gi|22095959|sp|Q92BZ5|NUSB_LISIN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|16413869|emb|CAC96627.1| lin1396 [Listeria innocua Clip11262]
gi|313619077|gb|EFR90883.1| transcription antitermination factor NusB [Listeria innocua FSL
S4-378]
gi|313623883|gb|EFR93998.1| transcription antitermination factor NusB [Listeria innocua FSL
J1-023]
Length = 128
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEQLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL+ + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRIDRLNKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|145588452|ref|YP_001155049.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046858|gb|ABP33485.1| NusB antitermination factor [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 174
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 8/153 (5%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ R AR A+Q +YQ S + +L + + L+
Sbjct: 26 PKRSLTPRRRAREYALQGVYQ------SLVMRRAGSLPNAAAIAKQLGEDPAFRRCQLDL 79
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
F+ I GV++R ++ +I+ + L + + L G EL SVP +V I+
Sbjct: 80 FQGIFDGVLERTDELEAIITP--ALDRPINELSPVEHAALLIGAYELAIDLSVPYKVAIN 137
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E V +A F D K++N VLD +++K
Sbjct: 138 EAVELAKTFGGTDGHKYVNGVLDLLAQKLRSAE 170
>gi|257784275|ref|YP_003179492.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
gi|257472782|gb|ACV50901.1| NusB antitermination factor [Atopobium parvulum DSM 20469]
Length = 167
Score = 93.7 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q L+Q + S E++ + + L V G
Sbjct: 8 RTRARSQALQLLFQAEATNRSVLEVLG----------GDYTLSEGPLDEYARLLAVGADG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ D I + ++ WS R+ + ++LR + E+++ V V V I+E V +A
Sbjct: 58 IRDDLDD----IIAAYSKDWSIDRMPSVDRNLLRISLYEILKVPEVDVAVAINEVVDLAR 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D P+FIN VL ++ +
Sbjct: 114 AYCGDDSPRFINGVLGRIVDDIDAGE 139
>gi|159037466|ref|YP_001536719.1| NusB antitermination factor [Salinispora arenicola CNS-205]
gi|189035900|sp|A8LY11|NUSB_SALAI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157916301|gb|ABV97728.1| NusB antitermination factor [Salinispora arenicola CNS-205]
Length = 136
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D+ E+++ Y L + +
Sbjct: 1 MPARRKARKRALDVLFEADLRDRPPVEVLAGYVERL----------EKPRPEHLGYAVGL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G+ +D LI+S E W+ R+ + ++ R V EL+ + V ISE V
Sbjct: 51 VEGIAVHLDRLDELIASY-AEGWTLDRMPAVDRNLARIAVYELLYVDEIDDAVAISEAVE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P+F+N +L +++
Sbjct: 110 LARQMSTDDSPRFLNGILGRIA 131
>gi|242242793|ref|ZP_04797238.1| transcription antitermination protein NusB [Staphylococcus
epidermidis W23144]
gi|242233929|gb|EES36241.1| transcription antitermination protein NusB [Staphylococcus
epidermidis W23144]
gi|319400860|gb|EFV89079.1| transcription antitermination factor NusB [Staphylococcus
epidermidis FRI909]
Length = 129
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR+ A Q L+Q++I T + ++ + +D ++ ++
Sbjct: 2 SRKDARIQAFQTLFQLEIKETDLT-----------IQEAIEFIKDDHSDLDFDFIYWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHQIVLDDTIKPHLKD-WSIDRLLKSDRIILRMATFEILHSD-TPKKVVVNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KF+N VL +
Sbjct: 109 KQFSDDDHYKFVNGVLSNI 127
>gi|227363166|ref|ZP_03847300.1| transcription antitermination protein NusB [Lactobacillus reuteri
MM2-3]
gi|227071772|gb|EEI10061.1| transcription antitermination protein NusB [Lactobacillus reuteri
MM2-3]
Length = 141
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K+S R + R A Q L+ + S +I + YE + ++ +
Sbjct: 3 KMSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIPP----------YLL 50
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E
Sbjct: 51 TLVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEA 110
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + F KFIN L K ++
Sbjct: 111 LELTKTFSSDKSRKFINGALGKFEKQVNENN 141
>gi|148555686|ref|YP_001263268.1| NusB antitermination factor [Sphingomonas wittichii RW1]
gi|148500876|gb|ABQ69130.1| NusB antitermination factor [Sphingomonas wittichii RW1]
Length = 151
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQ ++ G ++ E+ +R A E + Y ++ +F ++ GV R+ ID I
Sbjct: 23 YQQEMEGTPLAALLDEFHQHRLGATIE---DVEYAAAEVAFFDDLVKGVDARRAEIDAAI 79
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L W+ RLD + ILR G ELI VP +ISEYV +A F+ E F+N
Sbjct: 80 GARLASGWTLERLDRPMRQILRVGAYELIARPDVPTATVISEYVDVADAFYDKKEKGFVN 139
Query: 148 AVLDKVSRKEEI 159
VLD +++ +
Sbjct: 140 GVLDGIAKAVRV 151
>gi|88811151|ref|ZP_01126407.1| transcription antitermination protein NusB [Nitrococcus mobilis
Nb-231]
gi|88791690|gb|EAR22801.1| transcription antitermination protein NusB [Nitrococcus mobilis
Nb-231]
Length = 157
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
+QALYQ + + EI ++ E HVDLE+F +++ + R
Sbjct: 21 VLQALYQWQLTAQDSAEIERQFLE-----------EHNMAHVDLEYFAELLYEIPARLAS 69
Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
+D LI + +D + +ILR G EL + +P V+++E V +A F
Sbjct: 70 LDALIEP--ALDRPLAVIDPVEKAILRMGTYELTQRLDIPYRVVVNEAVDLARLFGAEQS 127
Query: 143 PKFINAVLDKV 153
++IN VLD+V
Sbjct: 128 HRYINGVLDRV 138
>gi|194336038|ref|YP_002017832.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308515|gb|ACF43215.1| sun protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 445
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+Q L ++ + ++ + S D +++GV
Sbjct: 2 TTARELALQVLQSLETGKQQSDTLLHRSLHH-----------STLNRADRALSTGLVNGV 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + +D +I+ + I+ +ILR GV +++ + VP ++E V +A
Sbjct: 51 LRYRLQLDFVIAQFY--HHKLEKAAPIMKNILRLGVYQILFLNKVPDWAAVNECVKLARK 108
Query: 137 FFYGDEPKFINAVLDKV 153
+ K +N VL K+
Sbjct: 109 YKGERMSKLVNGVLRKI 125
>gi|217077046|ref|YP_002334762.1| transcription antitermination protein NusB [Thermosipho africanus
TCF52B]
gi|226738907|sp|B7IH57|NUSB_THEAB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|217036899|gb|ACJ75421.1| transcription antitermination factor NusB [Thermosipho africanus
TCF52B]
Length = 142
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ RR R + +AL+Q D ++ + + + E E Y
Sbjct: 1 MIKRRHKMRESVFKALFQWDFQKD--EDLTEIAKQHVSLLEDEKLREQAYS--------- 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I G+ + +D +IS L + W+ RL + +ILR G EL+ VP+EV + E +
Sbjct: 50 YIEGIKKTIESLDEIISKYL-QNWTLDRLSVTDRNILRLGTYELLYVDDVPIEVTLDEMI 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + + KF+N VLD++++ E K
Sbjct: 109 ELGKTYGTENSGKFVNGVLDRIAKGEAPKE 138
>gi|187477080|ref|YP_785104.1| transcription antitermination protein NusB [Bordetella avium 197N]
gi|115421666|emb|CAJ48176.1| N utilization substance protein B [Bordetella avium 197N]
Length = 156
Score = 93.3 bits (230), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +Y + G T+ E + + A+ + D +WF+ ++HGV+
Sbjct: 16 EFALQGVYAWLLRGGQDTQDAGEIDAHLRDAE-------DFSEADAQWFKTLLHGVLREA 68
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ + + + L + IL G EL+ VP +V I+E V +A F
Sbjct: 69 PTLREHFTPYIDR--PLAELSPVEHGILLIGSYELVHHVEVPYKVAINEAVELAKSFGGT 126
Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
D KF+N VLDK++ R+ V A Q
Sbjct: 127 DGFKFVNGVLDKLAADV---RTAEVEAAAQ 153
>gi|119952909|ref|YP_945118.1| transcription antitermination protein NusB [Borrelia turicatae
91E135]
gi|119861680|gb|AAX17448.1| N utilization substance protein B [Borrelia turicatae 91E135]
Length = 146
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A Q +Y IDI + I + + E ++ ++ V+++G
Sbjct: 6 RHKARVLAFQKIYSIDINCKAKDNIYDIFNLEDHGLELEENL--------KLFYSVLVNG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIA 134
D + ID LI S ++ W R+D + +ILR V L VP VII E + IA
Sbjct: 58 TYDNLEFIDKLI-SDISLNWRLDRMDKVDLAILRMSVYSLKFQNLDVPKRVIIDEAILIA 116
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ + KF+N +LD + + E
Sbjct: 117 KKYGSKNSYKFVNGILDALLKNME 140
>gi|157150386|ref|YP_001451127.1| transcription antitermination protein NusB [Streptococcus gordonii
str. Challis substr. CH1]
gi|157075180|gb|ABV09863.1| transcription antitermination factor NusB [Streptococcus gordonii
str. Challis substr. CH1]
Length = 137
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A QAL ++ + + Y + E VE +
Sbjct: 1 MVDSRRDLRERAFQALMSLE---YDGDIVEACRFAYLHDKEEEEQVELPI------FLLN 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GVM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E +
Sbjct: 52 LVNGVMQSKSELDDKITQYLKSGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A F KFIN +L + +E
Sbjct: 112 ELAKKFSDEKSSKFINGILSQFVTEE 137
>gi|27468123|ref|NP_764760.1| transcription antitermination protein NusB [Staphylococcus
epidermidis ATCC 12228]
gi|57867014|ref|YP_188662.1| transcription antitermination protein NusB [Staphylococcus
epidermidis RP62A]
gi|251810937|ref|ZP_04825410.1| transcription antitermination protein NusB [Staphylococcus
epidermidis BCM-HMP0060]
gi|282876054|ref|ZP_06284921.1| transcription antitermination factor NusB [Staphylococcus
epidermidis SK135]
gi|293366519|ref|ZP_06613196.1| N utilization substance protein B [Staphylococcus epidermidis
M23864:W2(grey)]
gi|32129816|sp|Q8CP37|NUSB_STAES RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71153023|sp|Q5HP28|NUSB_STAEQ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|27315669|gb|AAO04804.1|AE016748_38 transcription termination factor [Staphylococcus epidermidis ATCC
12228]
gi|57637672|gb|AAW54460.1| N utilization substance protein B [Staphylococcus epidermidis
RP62A]
gi|251805617|gb|EES58274.1| transcription antitermination protein NusB [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295079|gb|EFA87606.1| transcription antitermination factor NusB [Staphylococcus
epidermidis SK135]
gi|291319288|gb|EFE59657.1| N utilization substance protein B [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725378|gb|EGG61861.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU144]
gi|329735255|gb|EGG71547.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU045]
gi|329737366|gb|EGG73620.1| transcription antitermination factor NusB [Staphylococcus
epidermidis VCU028]
Length = 129
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR+ A Q L+Q++I T + ++ + +D ++ ++
Sbjct: 2 SRKDARVQAFQTLFQLEIKETDLT-----------IQEAIEFIKDDHSDLDFDFIYWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHQIVLDETIKPHLKD-WSIDRLLKSDRIILRMATFEILHSD-TPKKVVVNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KF+N VL +
Sbjct: 109 KQFSDDDHYKFVNGVLSNI 127
>gi|269127152|ref|YP_003300522.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
gi|268312110|gb|ACY98484.1| NusB antitermination factor [Thermomonospora curvata DSM 43183]
Length = 138
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ LY ++ G T+++++ + E +
Sbjct: 1 MAARTKARKLALDILYAAEMRGERPTDVLAQRGRPNTDEISA-----------REHAVRL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV + ++ ID L+ + W+ R+ + ++LR G EL+ VP V I+E V
Sbjct: 50 IEGVQEHRERIDELL-ATYATGWTLDRMPAVDRNLLRLGAYELLWVDDVPDGVAIAEAVA 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + + P+F+N +L ++ R
Sbjct: 109 LATELSTDESPRFVNGLLSRLQR 131
>gi|145594393|ref|YP_001158690.1| transcription antitermination factor NusB [Salinispora tropica
CNB-440]
gi|189035903|sp|A4X612|NUSB_SALTO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|145303730|gb|ABP54312.1| transcription antitermination factor NusB [Salinispora tropica
CNB-440]
Length = 136
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D+ G E+++ Y L + +
Sbjct: 1 MPARRKARKRALDVLFEADLRGRPPVEVLAGYVER----------IEKPRPEHLGYAVGL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV R +D LI+S E W+ R+ + ++ R V EL+ + V ISE V
Sbjct: 51 VEGVAARLDRVDELIASY-AEGWTLDRMPTVDRNLARIAVYELLYVDEIDDAVAISEAVE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P+F+N +L +++
Sbjct: 110 LARQMSTDDSPRFLNGLLGRIA 131
>gi|239948522|ref|ZP_04700275.1| transcription antitermination factor NusB [Rickettsia endosymbiont
of Ixodes scapularis]
gi|239922798|gb|EER22822.1| transcription antitermination factor NusB [Rickettsia endosymbiont
of Ixodes scapularis]
Length = 156
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 8 KDLKLSHRRGIARLAAVQALYQ-IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVD 65
+++ IAR+AAVQA+YQ I +I+ + Y+ E++ + +
Sbjct: 1 MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNILSFYQNNNSITDLPENLKISLS 60
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ F++++ V + +D +I + LT + + ++L ++LRAG+ EL+ C + P +V
Sbjct: 61 ISHFKMLVKSVFENINKLDEIIDNHLTNNKDPAHMLILLRALLRAGICELLFCPTTPAKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I+EY IA+D E F+N+VLDK++++
Sbjct: 121 VINEYTDIANDMLNEHEIGFVNSVLDKIAKE 151
>gi|203287574|ref|YP_002222589.1| N-utilization substance protein B [Borrelia recurrentis A1]
gi|201084794|gb|ACH94368.1| N-utilization substance protein B [Borrelia recurrentis A1]
Length = 146
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A Q +Y ID+ + I + D + D+ ++ V+++G
Sbjct: 6 RHKARILAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDL--------KLFYSVLVNG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
D + ID LI S ++ W R+D + +ILR V L VP VII E + IA
Sbjct: 58 TYDNLESIDKLI-SGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ + KF+N +LD + + E
Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140
>gi|255284121|ref|ZP_05348676.1| transcription antitermination factor NusB [Bryantella formatexigens
DSM 14469]
gi|255265295|gb|EET58500.1| transcription antitermination factor NusB [Bryantella formatexigens
DSM 14469]
Length = 134
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + L+ ++ + + E+ D E+ H
Sbjct: 2 SRREIREHIFKLLFLLEFYQKEE-------LNEQAELYMDEVEEAAPTEKDAEYIFDKFH 54
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ +D +++ ++ W R++ + +ILR E++E +PV V I+E V +A
Sbjct: 55 KIEEKLPQLDERLAAE-SQGWKLGRMNKVDLAILRLAAYEVLEDDDIPVGVAINEAVELA 113
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ D P F+N VL K++R
Sbjct: 114 KKYGGDDSPSFVNGVLGKIAR 134
>gi|300741572|ref|ZP_07071593.1| transcription antitermination factor NusB [Rothia dentocariosa
M567]
gi|311113665|ref|YP_003984887.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
17931]
gi|300380757|gb|EFJ77319.1| transcription antitermination factor NusB [Rothia dentocariosa
M567]
gi|310945159|gb|ADP41453.1| transcription antitermination factor NusB [Rothia dentocariosa ATCC
17931]
Length = 136
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AV+ L++ D +++ + + + I
Sbjct: 1 MNSRTKARLRAVEVLFEADQRQEDIIDVLKRRRLHTAAQIS-------------AYAEEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + I + WSF R+ + ILR G EL+ VP V ISE
Sbjct: 48 VRGVREHDDEIREYL-ETYARDWSFERMPAVDRVILRIGAWELLYNDDVPDAVAISEATG 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A D PKF+N +LDK+
Sbjct: 107 LARVLSTNDSPKFVNGLLDKL 127
>gi|21219991|ref|NP_625770.1| transcription antitermination protein NusB [Streptomyces coelicolor
A3(2)]
gi|256788910|ref|ZP_05527341.1| transcription antitermination protein NusB [Streptomyces lividans
TK24]
gi|289772797|ref|ZP_06532175.1| transcription antitermination factor NusB [Streptomyces lividans
TK24]
gi|22095971|sp|Q9KXR0|NUSB_STRCO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|8249949|emb|CAB93370.1| putative NusB-family protein [Streptomyces coelicolor A3(2)]
gi|289702996|gb|EFD70425.1| transcription antitermination factor NusB [Streptomyces lividans
TK24]
Length = 142
Score = 93.3 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGADVLTVLADWVRHSRSDTRQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G R + ID LI+ + W+ R+ ++ +ILR G EL+ + P V++ E V
Sbjct: 53 VEGYAGRAERIDELIAQY-SVDWTLDRMPVVDRNILRLGAYELLWVDATPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P FIN +L ++
Sbjct: 112 LAKEFSTDESPAFINGLLGRL 132
>gi|294791792|ref|ZP_06756940.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
gi|294457022|gb|EFG25384.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
6_1_27]
Length = 451
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++++ RL AV+AL +I+ G + EY +D +F
Sbjct: 5 KTNQQQNIRLLAVKALSEINRNGAYANIKLQEYLQKYH-----------LSDLDRRFFTE 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V
Sbjct: 54 LVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+A F+NAVL V R+ + G ++
Sbjct: 112 KLAKKL-TRGLSGFVNAVLRSVLRESDSISIGELAK 146
>gi|327399588|ref|YP_004340457.1| NusB antitermination factor [Hippea maritima DSM 10411]
gi|327182217|gb|AEA34398.1| NusB antitermination factor [Hippea maritima DSM 10411]
Length = 133
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AVQ +Y + + ++ + D + + +I
Sbjct: 2 SRRKARTVAVQYIYSKEFGNEDSPYAFMDFVGH------------PKKEDDKAFAKKLID 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + I+ LI + + +I SILR G+ EL+ V+I+EYV IA
Sbjct: 50 GTIQNLDIINNLIKKYASAGDDI--MSLIDKSILRVGIYELLFLREAHPVVVINEYVNIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ +NA+LDKV +
Sbjct: 108 KELSKESSKSLVNAILDKVYK 128
>gi|203284032|ref|YP_002221772.1| N-utilization substance protein B [Borrelia duttonii Ly]
gi|201083475|gb|ACH93066.1| N-utilization substance protein B [Borrelia duttonii Ly]
Length = 146
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A Q +Y ID+ + I + D + D+ ++ V+++G
Sbjct: 6 RHKARVLAFQKIYSIDVNCKAKDNIFDIFSFEENGIDLDGDL--------KLFYSVLVNG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVIISEYVCIA 134
D + ID LI S ++ W R+D + +ILR V L VP VII E + IA
Sbjct: 58 TYDNLESIDKLI-SGISLNWRLDRMDKVDLAILRMSVYSLKFQDLDVPKRVIIDEAILIA 116
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ + KF+N +LD + + E
Sbjct: 117 KKYGNKNSDKFVNGILDALLKDME 140
>gi|319651493|ref|ZP_08005621.1| transcription antitermination protein NusB [Bacillus sp.
2_A_57_CT2]
gi|317396808|gb|EFV77518.1| transcription antitermination protein NusB [Bacillus sp.
2_A_57_CT2]
Length = 129
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QID+ I E+ ++
Sbjct: 2 KRRTAREKALQALFQIDVSQAEPETAIEHVLE---------------GEKSDEYLNKLVS 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133
GV+ K+ ID I EKW+ RL + ++LR V EL+ VP V++ E + I
Sbjct: 47 GVLQHKETIDGEI-KGFLEKWTLERLATVDRNLLRLSVYELLYLAEEVPANVVLDEAIEI 105
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A + KFIN VL KV K
Sbjct: 106 AKLYGDDQSSKFINGVLSKVKEKL 129
>gi|332530152|ref|ZP_08406101.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
gi|332040422|gb|EGI76799.1| NusB antitermination factor [Hylemonella gracilis ATCC 19624]
Length = 187
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K + R +R A+QALYQ + +T +I D + + D
Sbjct: 36 KPSRALSGRSRSREFALQALYQHLVGRNATADI-----------DAFTRDLTGFHKADAA 84
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ ++HG ++ + +D LI L + + I +I+ G E C VP V++
Sbjct: 85 HYDALLHGCVNEAEALDRLILPLLDR--KLAEISPIERAIMWMGAYEFQHCVDVPWRVVL 142
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+EY+ +A F D K++NAVL+ ++ A
Sbjct: 143 NEYIELAKSFGGTDGHKYVNAVLNGLAPTLRAAEVAADKA 182
>gi|167770740|ref|ZP_02442793.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
17241]
gi|167667335|gb|EDS11465.1| hypothetical protein ANACOL_02086 [Anaerotruncus colihominis DSM
17241]
Length = 161
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +R A +++ S EII + R + + +
Sbjct: 2 KRSESREQAFMLIFERSFKDESIDEIIEQAAIGRNLQVDD-------------YAYRLAS 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V +D I+S ++KW +R+ + SILR + E+ +VP I+E V +A
Sbjct: 49 DVCGNLPWLDEAIASY-SKKWKINRMSRVALSILRLSLWEIDHVDTVPAGASINEAVELA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ D+ F+N VL R+++ V
Sbjct: 108 KKYGNDDDFSFVNGVLGAYVRRKDSSEQAGVEE 140
>gi|114566114|ref|YP_753268.1| hypothetical protein Swol_0564 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|119390841|sp|Q0AZF7|NUSB_SYNWW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114337049|gb|ABI67897.1| NusB antitermination factor [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 134
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 12/144 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A + ++Q+D + + + + + +I
Sbjct: 2 SRRKARETAFKVVFQVDQVQADAKKAFDYLVLH-----------DKLAEKNQGFSWDLIQ 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++++ ID +I+S + +W+ R+ + +I+R E++ V I E + IA
Sbjct: 51 GTLEKQAEIDQMIASY-SREWALDRMSSVDRNIMRVAAYEILYLEDSQAVVAIDEAIEIA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ F+NA+LDK+ ++
Sbjct: 110 KKYGDEGSGSFVNAILDKILGEKN 133
>gi|326382154|ref|ZP_08203846.1| transcription antitermination protein NusB [Gordonia neofelifaecis
NRRL B-59395]
gi|326198884|gb|EGD56066.1| transcription antitermination protein NusB [Gordonia neofelifaecis
NRRL B-59395]
Length = 149
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K R AR AV L++ + T++I+E D+ + ++
Sbjct: 1 MKKPGTRHKARKRAVDLLFEAEAKNVKATQLIAERREIYPSDDSVGTM--------YDYT 52
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ GV +D +I S L E W RL + +ILR V EL+ + V ++V++ E
Sbjct: 53 VRVVEGVTVDASQVDAVIESHL-ENWKLHRLPAVDRAILRLAVWELLYANDVDIDVVLDE 111
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V +A + D P F+N VL KV+ R+ +
Sbjct: 112 AVELAKELSTDDSPSFVNGVLGKVAELAPQVRAAASAE 149
>gi|290893532|ref|ZP_06556515.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-071]
gi|290556877|gb|EFD90408.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-071]
Length = 128
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDERDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKVEIDAIIEPNLDN-WRIDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|116872790|ref|YP_849571.1| transcription antitermination protein NusB [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|123466249|sp|A0AIG0|NUSB_LISW6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116741668|emb|CAK20792.1| N utilization substance protein B/transcription termination factor
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 128
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRMDRLSKVDLSLLRLSVYEINYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|323699091|ref|ZP_08111003.1| NusB antitermination factor [Desulfovibrio sp. ND132]
gi|323459023|gb|EGB14888.1| NusB antitermination factor [Desulfovibrio desulfuricans ND132]
Length = 149
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 11/155 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +K R + R A Q LY + D V
Sbjct: 1 MT---SKSKGNRPGIRRVGRTLAFQVLYSTHFLDK------ENPLDMDTLFDLNPMVVEQ 51
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ R ++ GV ID I ++ W R+ M+ SILR + E++
Sbjct: 52 ESETARAFARDLVRGVSVNLHDIDRTIEEH-SQHWKIERIAMVELSILRLSLYEMLFTD- 109
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+PV+ I+E + ++ F F+N +LD V++
Sbjct: 110 IPVKAAINEAIELSKTFGDDKSRSFVNGILDGVAK 144
>gi|148544409|ref|YP_001271779.1| transcription antitermination protein NusB [Lactobacillus reuteri
DSM 20016]
gi|184153772|ref|YP_001842113.1| transcription antitermination protein NusB [Lactobacillus reuteri
JCM 1112]
gi|166918809|sp|A5VKR8|NUSB_LACRD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229620058|sp|B2G851|NUSB_LACRJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|148531443|gb|ABQ83442.1| NusB antitermination factor [Lactobacillus reuteri DSM 20016]
gi|183225116|dbj|BAG25633.1| transcription termination factor [Lactobacillus reuteri JCM 1112]
Length = 138
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R + R A Q L+ + S +I + YE + ++ +
Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIPP----------YLLT 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E +
Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F KFIN L K ++
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138
>gi|229823019|ref|ZP_04449089.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
gi|229787832|gb|EEP23946.1| hypothetical protein GCWU000282_00312 [Catonella morbi ATCC 51271]
Length = 154
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 7/153 (4%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ R R AVQ ++Q+ + + D E E
Sbjct: 6 SSVTKMSNRHQVREKAVQTIFQLIRPQVPVSLDQACAFALEAGNDPEAGFEGSD-----A 60
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEV 125
+ ++ GV + +D IS L E W+ RL I +ILR EL+ VP +V
Sbjct: 61 YLDRLVQGVNQTAEELDQRISHYLAEDWTLDRLARIDLAILRVAFYELLYVSEDEVPSKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++E V +A F +FIN VL + + +
Sbjct: 121 AVNEAVELAKTFSDDKSKQFINGVLAGLLKDLK 153
>gi|228475963|ref|ZP_04060671.1| transcription antitermination factor NusB [Staphylococcus hominis
SK119]
gi|314936353|ref|ZP_07843700.1| transcription antitermination factor NusB [Staphylococcus hominis
subsp. hominis C80]
gi|228269786|gb|EEK11266.1| transcription antitermination factor NusB [Staphylococcus hominis
SK119]
gi|313654972|gb|EFS18717.1| transcription antitermination factor NusB [Staphylococcus hominis
subsp. hominis C80]
Length = 128
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A Q L+Q+++ T + ++ Y +D E+ ++
Sbjct: 2 SRKESRKQAFQTLFQLEMKNTDLT-----------INEAINFIKDDYPDLDFEFIHWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D +Q +D I L + WS RL ILR EL+ P +VII+E V +
Sbjct: 51 GVKDHEQVLDQSIEPKLKD-WSIQRLLKTDRIILRMATFELLHSD-TPPKVIINEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F KFIN VL +
Sbjct: 109 KQFSDEGHYKFINGVLSNI 127
>gi|194466519|ref|ZP_03072506.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
gi|194453555|gb|EDX42452.1| NusB antitermination factor [Lactobacillus reuteri 100-23]
Length = 138
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R + R A Q L+ + +I + YE + ++ +
Sbjct: 1 MSLNRHMIREEAFQVLFALQ--SDPEADIQTVYEAIPHHDEKQIPP----------YLLT 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV + + +D I+ L W+ +RL ILR + E+ +VP V I+E +
Sbjct: 49 LVNGVREHQDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F KFIN L K ++
Sbjct: 109 ELTKTFSSDKSRKFINGALGKFEKQVNENN 138
>gi|71911358|ref|YP_282908.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS5005]
gi|71854140|gb|AAZ52163.1| N utilization substance protein B [Streptococcus pyogenes MGAS5005]
Length = 150
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 13/154 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
A + KFIN +L + SG SA
Sbjct: 121 AKKYSDETSAKFINGLLSQYV-------SGAPSA 147
>gi|322373691|ref|ZP_08048227.1| transcription antitermination factor NusB [Streptococcus sp. C150]
gi|321278733|gb|EFX55802.1| transcription antitermination factor NusB [Streptococcus sp. C150]
Length = 144
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A Q L+ ++ G + + + D + E+ + +
Sbjct: 6 KDSRRDLRERAFQTLFALEFGGEVLEQAH-----FAYTFDKPIGEETEVDVP--AFLLSL 58
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + +D I L E WS SRL + ++LR G+ E+ P V I+E +
Sbjct: 59 VTGVREELAQLDSQIEEKLKEGWSLSRLIVTDRTLLRLGLYEITSFEETPGRVAINEIIE 118
Query: 133 IAHDFFYGDEPKFINAVL 150
IA + KFIN VL
Sbjct: 119 IAKKYSDETSAKFINGVL 136
>gi|153953852|ref|YP_001394617.1| transcription antitermination protein NusB [Clostridium kluyveri
DSM 555]
gi|219854467|ref|YP_002471589.1| hypothetical protein CKR_1124 [Clostridium kluyveri NBRC 12016]
gi|189035884|sp|A5N7I8|NUSB_CLOK5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772627|sp|B9E100|NUSB_CLOK1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|146346733|gb|EDK33269.1| NusB [Clostridium kluyveri DSM 555]
gi|219568191|dbj|BAH06175.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 156
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 10/156 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE---------SVYLHVD 65
R R ++ L+Q+ I IIS + ++D
Sbjct: 2 NRKKTRELTMKLLFQMAINKEKADVIISNLKENIEMEQGSQKNSISQIYGENMGDLKNID 61
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+++ ++ G+ + +++ I L W +RL + +IL+ E + +P +V
Sbjct: 62 IDYVVRVLRGIEKNEDMLNIEIEKYL-RNWKLNRLSKVDSAILKICTYEFLHEDDIPEKV 120
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+E + +A + FIN VL + + E+IK+
Sbjct: 121 SINEAIELAKKYSSEKSASFINGVLGNMIKDEKIKK 156
>gi|94984805|ref|YP_604169.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
gi|119390766|sp|Q1J0I4|NUSB_DEIGD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|94555086|gb|ABF45000.1| NusB antitermination factor [Deinococcus geothermalis DSM 11300]
Length = 169
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 11/175 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++ + R AR A + L++ + + + D +
Sbjct: 1 MTR-RRERGQQPVGTRRAAREFAFRVLFEAERGKLPLETV---FTRAEGDMREGDDTFAQ 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
L + R ++ G+ +R+ +D + + W F ++ ++LR E++
Sbjct: 57 LNAEALAFARQLVDGLGERRADVDAALRRTI-RGWDFEQMAQTDLNVLRLATYEMLYTPE 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI-----KRSGCVSAITQ 170
V I V IA F D +F+N VL +SR + + +G +
Sbjct: 116 PHPPV-IESAVRIARKFGGEDSGRFVNGVLGGLSRSLKTAPRLPQNTGAEDGPQE 169
>gi|289550704|ref|YP_003471608.1| Transcription termination protein NusB [Staphylococcus lugdunensis
HKU09-01]
gi|315658200|ref|ZP_07911072.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis M23590]
gi|289180236|gb|ADC87481.1| Transcription termination protein NusB [Staphylococcus lugdunensis
HKU09-01]
gi|315496529|gb|EFU84852.1| transcription antitermination factor NusB [Staphylococcus
lugdunensis M23590]
Length = 128
Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A Q L+Q+++ + ++ ++ + +D + ++
Sbjct: 2 SRKESRTQAFQTLFQLEMKDSDLS-----------ISEAINFIKDDHPDLDFTFIHWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS +RL ILR EL+ P +VII+E V +
Sbjct: 51 GVKDHEPILDKAIEPHLKD-WSLNRLLKTDRIILRMATFELLHSD-TPPKVIINEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KFIN VL +
Sbjct: 109 KQFSDDDHYKFINGVLSNI 127
>gi|302550131|ref|ZP_07302473.1| transcription antitermination factor NusB [Streptomyces
viridochromogenes DSM 40736]
gi|302467749|gb|EFL30842.1| transcription antitermination factor NusB [Streptomyces
viridochromogenes DSM 40736]
Length = 144
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A Q L++ D G +++++ + V E+ +
Sbjct: 1 MAARNTARKRAFQILFEGDQRGAEALTVLADWVRLSRADTRQPPVS--------EYTMEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + ID LI+ + W+ R+ ++ +ILR G ELI + P V++ E V
Sbjct: 53 VEGYAKHAKRIDELIAQY-SVGWTLDRMPVVDRNILRLGAYELIWVDATPDAVVLDEMVQ 111
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A +F + P F+N +L ++
Sbjct: 112 LAKEFSTDESPSFVNGLLGRL 132
>gi|254518730|ref|ZP_05130786.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
gi|226912479|gb|EEH97680.1| NusB antitermination factor [Clostridium sp. 7_2_43FAA]
Length = 134
Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L+ + + + E I + E +DLE+ + I+
Sbjct: 2 NRKRSREIAMELLFGMTLSKNTLEETIETFIEDY---------EMNLKTIDLEYIKGILA 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V + ID I LT W R+ + SILR + E++ VP +V I+E + +
Sbjct: 53 KVEENITVIDQKIEEALTN-WKIDRVSKVNISILRLAIAEMLYVEDVPEKVAINEAIELT 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ F+N VLDK +
Sbjct: 112 KKYSDEKSVSFVNGVLDKAFKSL 134
>gi|291300632|ref|YP_003511910.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
gi|290569852|gb|ADD42817.1| NusB antitermination factor [Stackebrandtia nassauensis DSM 44728]
Length = 147
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 8/139 (5%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR AV LY+ + ++ + +L V + E+ ++ G
Sbjct: 12 RRKARKRAVDVLYEAEQRDEPIRRVLEDR--------RKLAVTDPQMPGIPEYTFELVDG 63
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + +D +I+ CL W R+ + +ILR EL V V ISE V IA
Sbjct: 64 VAEYLDEVDDVIARCLHSGWYLDRIAAVDRNILRVAAFELRYREDVDAAVAISEAVKIAE 123
Query: 136 DFFYGDEPKFINAVLDKVS 154
D P F+N VL VS
Sbjct: 124 VLCGEDSPAFVNGVLQSVS 142
>gi|206901052|ref|YP_002250763.1| transcription antitermination factor NusB [Dictyoglomus
thermophilum H-6-12]
gi|254772635|sp|B5YE05|NUSB_DICT6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|206740155|gb|ACI19213.1| transcription antitermination factor NusB [Dictyoglomus
thermophilum H-6-12]
Length = 144
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 19/151 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R +Q L+Q D+ E+ ++ S + +
Sbjct: 1 MSKERTRCREKVLQLLFQKDLGQ----EVEVDF--------------SDFSPQGQAFAYR 42
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + K + I S ++ W R+ + +ILR + E+ +P V ++E V
Sbjct: 43 LYDGALQYKD-LADSIISRFSKNWKLERMGALERNILRLAIAEMFTFSDIPQAVTVNEAV 101
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A + + +F+N +L + R E +S
Sbjct: 102 ELAKKYVSPEAGRFVNGILRNIVRNWEEVKS 132
>gi|70726392|ref|YP_253306.1| transcription antitermination protein NusB [Staphylococcus
haemolyticus JCSC1435]
gi|119390830|sp|Q4L6M5|NUSB_STAHJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|68447116|dbj|BAE04700.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 128
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D ++ ++
Sbjct: 2 SRKESRMQAFQTLFQLEMKDTELT-----------INEAINFIKDDEPELDFDFIHWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR EL+ P +VII+E V +A
Sbjct: 51 GVKDHEPVLDDTIKPHLKD-WSLQRLLKTDRIILRMATFELLHSD-TPPKVIINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F + KFIN VL +
Sbjct: 109 KQFSDDEHYKFINGVLSNI 127
>gi|297584560|ref|YP_003700340.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
gi|297143017|gb|ADH99774.1| NusB antitermination factor [Bacillus selenitireducens MLS10]
Length = 134
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR+ A+QALYQ+++ G + E I D + ++
Sbjct: 2 KRRVARIKAIQALYQVEMTGVNPEEAIKTVLEENESMDP--------------YLLTLVE 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V++ +D+ I + W SRL + +I+R + E+I VPV V I+E + +A
Sbjct: 48 RVLEEMDELDIKIQDSMDN-WQLSRLARVDRAIMRIAMYEMIHSDDVPVSVAINEAIDLA 106
Query: 135 HDFFYG-DEPKFINAVLDKVSRKEEIK 160
F + KF+N VL ++K E+
Sbjct: 107 RGFSGDEESGKFVNGVLSNAAKKLEVN 133
>gi|284048210|ref|YP_003398549.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
gi|283952431|gb|ADB47234.1| NusB antitermination factor [Acidaminococcus fermentans DSM 20731]
Length = 139
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+++L+ ++ S E + + DL + ++
Sbjct: 2 SRRDARTIAMRSLFALEFSPEQSPEETVRTMAEE--------EDIQDTRKKDLAYALDLV 53
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVC 132
GV + ++ +D ++ + W+ R++ I ++LR E+ P V I+E V
Sbjct: 54 KGVRENQEALDGELNGLDAK-WTLKRMNGIDRNLLRIAGYEMFCSPEPVPPAVAINEAVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
+A + D P FIN +L + +K
Sbjct: 113 LAKVYGGDDSPAFINGLLGSLVKK 136
>gi|16803399|ref|NP_464884.1| transcription antitermination protein NusB [Listeria monocytogenes
EGD-e]
gi|46907585|ref|YP_013974.1| transcription antitermination protein NusB [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093746|ref|ZP_00231496.1| N utilization substance protein B [Listeria monocytogenes str. 4b
H7858]
gi|47095942|ref|ZP_00233545.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
F6854]
gi|224499938|ref|ZP_03668287.1| transcription antitermination protein NusB [Listeria monocytogenes
Finland 1988]
gi|224501698|ref|ZP_03670005.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL R2-561]
gi|226223960|ref|YP_002758067.1| transcription termination protein (NusB) [Listeria monocytogenes
Clip81459]
gi|254824582|ref|ZP_05229583.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-194]
gi|254827620|ref|ZP_05232307.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL N3-165]
gi|254852593|ref|ZP_05241941.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL R2-503]
gi|254898476|ref|ZP_05258400.1| transcription antitermination protein NusB [Listeria monocytogenes
J0161]
gi|254912033|ref|ZP_05262045.1| transcription antitermination protein NusB [Listeria monocytogenes
J2818]
gi|254932326|ref|ZP_05265685.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
gi|254936360|ref|ZP_05268057.1| transcription antitermination protein NusB [Listeria monocytogenes
F6900]
gi|254994167|ref|ZP_05276357.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J2-064]
gi|255018100|ref|ZP_05290226.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL F2-515]
gi|255029814|ref|ZP_05301765.1| transcription antitermination protein NusB [Listeria monocytogenes
LO28]
gi|255520789|ref|ZP_05388026.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-175]
gi|284801744|ref|YP_003413609.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5578]
gi|284994886|ref|YP_003416654.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5923]
gi|300765401|ref|ZP_07075383.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
gi|22095949|sp|Q8Y7C6|NUSB_LISMO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|67460884|sp|Q71ZW3|NUSB_LISMF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|259514854|sp|C1L2R5|NUSB_LISMC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|16410775|emb|CAC99437.1| lmo1359 [Listeria monocytogenes EGD-e]
gi|46880853|gb|AAT04151.1| N utilization substance protein B [Listeria monocytogenes serotype
4b str. F2365]
gi|47015688|gb|EAL06618.1| N utilization substance protein B [Listeria monocytogenes str. 1/2a
F6854]
gi|47017867|gb|EAL08650.1| N utilization substance protein B [Listeria monocytogenes str. 4b
H7858]
gi|225876422|emb|CAS05131.1| Putative transcription termination protein (NusB) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258599998|gb|EEW13323.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL N3-165]
gi|258605906|gb|EEW18514.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL R2-503]
gi|258608951|gb|EEW21559.1| transcription antitermination protein NusB [Listeria monocytogenes
F6900]
gi|284057306|gb|ADB68247.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5578]
gi|284060353|gb|ADB71292.1| transcription antitermination protein NusB [Listeria monocytogenes
08-5923]
gi|293583882|gb|EFF95914.1| N utilization substance protein B [Listeria monocytogenes HPB2262]
gi|293589999|gb|EFF98333.1| transcription antitermination protein NusB [Listeria monocytogenes
J2818]
gi|293593820|gb|EFG01581.1| transcription antitermination protein NusB [Listeria monocytogenes
FSL J1-194]
gi|300513838|gb|EFK40903.1| hypothetical protein LMHG_12558 [Listeria monocytogenes FSL N1-017]
gi|328467497|gb|EGF38566.1| transcription antitermination protein NusB [Listeria monocytogenes
1816]
gi|328475073|gb|EGF45861.1| transcription antitermination protein NusB [Listeria monocytogenes
220]
gi|332311800|gb|EGJ24895.1| N pathway substance protein [Listeria monocytogenes str. Scott A]
Length = 128
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|262371010|ref|ZP_06064333.1| transcription termination L factor [Acinetobacter johnsonii SH046]
gi|262314086|gb|EEY95130.1| transcription termination L factor [Acinetobacter johnsonii SH046]
Length = 152
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR AVQ +Y+ + EI + VE+ VDL ++ ++
Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEI-----------EARTRVENAMHKVDLSYYHELLTQ 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + +D L+ L + S LD + + LR G EL E +P V++ E + +A
Sbjct: 61 VVANHEALDALLIPVLDRE--VSALDGVELATLRLGAYELKEHLEIPYRVVLDEAIELAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K+IN VLD+++
Sbjct: 119 HFGGADSHKYINGVLDRLATTLRAAE 144
>gi|296125572|ref|YP_003632824.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
gi|296017388|gb|ADG70625.1| NusB antitermination factor [Brachyspira murdochii DSM 12563]
Length = 154
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 13/157 (8%)
Query: 3 IQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
++N KDL LS R AR+ AV +LY +I + D +
Sbjct: 7 NKENIKDLDLSAYGARRQARIYAVMSLYSYEINERKI----------SINNILDFDYDKK 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ R ++ G + + ID LI + W R+ + SI+R + LI
Sbjct: 57 IPENIFAFTRNLVEGTIKNLERIDSLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKD 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P V+I E V IA F D KF+N +LD + ++
Sbjct: 116 IPKSVVIDEAVEIAKIFSDKDSYKFVNGILDGIQEED 152
>gi|259503557|ref|ZP_05746459.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
gi|259168470|gb|EEW52965.1| N utilization substance protein B [Lactobacillus antri DSM 16041]
Length = 136
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 55/148 (37%), Gaps = 12/148 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A Q L+ + A + ++ R
Sbjct: 1 MSLTRHALREEAFQVLFALQTNPE------------ADLATIYRSIPHHDERALPDYVRQ 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV +R+ +D IS L W+ RL ILR + EL VP V I+E +
Sbjct: 49 LATGVSERQADLDEQISGLLASDWTIDRLAKADLIILRLALYELQYVDEVPTAVAINEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+A +F KFIN L + ++ +
Sbjct: 109 ELAKEFSSDQSRKFINGALGRFEKENNL 136
>gi|258515525|ref|YP_003191747.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
gi|257779230|gb|ACV63124.1| sun protein [Desulfotomaculum acetoxidans DSM 771]
Length = 452
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 13/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L +D G +++ R + +D + +++G +
Sbjct: 5 NAREMALIVLKAVDQEGAYANIALNQVLEQR-----------DFNKLDRAFTTELVYGTL 53
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D +++ L S + +ILR G +L+ H VP +E ++H +
Sbjct: 54 RALNTVDWVLAQFLK--HPLSSQTAWIRNILRLGTYQLLFMHRVPASAACNEAAKLSHKY 111
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
+ + KF+N VL ++R+ E
Sbjct: 112 GHKGQVKFVNGVLRNIARQHENIE 135
>gi|269797911|ref|YP_003311811.1| sun protein [Veillonella parvula DSM 2008]
gi|269094540|gb|ACZ24531.1| sun protein [Veillonella parvula DSM 2008]
Length = 451
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++++ RL AV+AL +I+ G Y E + +D +F
Sbjct: 5 KTNQQQNIRLLAVKALSEINRNG-----------AYANIKLQEYLQKYHLSDLDRRFFTE 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ RK ++D +I +L ++ ILR G+ ++I VP ++E V
Sbjct: 54 LVYGVIRRKNYLDAIIVFFAKR--PIKKLSSMVLEILRLGIYQIIYMDKVPESAAVNESV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+A F+NAVL V R+ + G ++
Sbjct: 112 KLAKKL-TRGLSGFVNAVLRSVLRESDSISIGELAK 146
>gi|255318080|ref|ZP_05359325.1| transcription antitermination factor NusB [Acinetobacter
radioresistens SK82]
gi|262380575|ref|ZP_06073729.1| transcription antitermination factor NusB [Acinetobacter
radioresistens SH164]
gi|255304903|gb|EET84075.1| transcription antitermination factor NusB [Acinetobacter
radioresistens SK82]
gi|262298021|gb|EEY85936.1| transcription antitermination factor NusB [Acinetobacter
radioresistens SH164]
Length = 149
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR AVQ +Y+ + EI + E+ VDL ++ ++
Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLGYYHELLTQ 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + + +D L+ L + LD + + LR G EL + +P V++ E + +A
Sbjct: 61 VVAQHEALDTLLVPVLDRE--LGALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K+IN VLD++++
Sbjct: 119 HFGGADSHKYINGVLDRLAQSLRAAE 144
>gi|169629920|ref|YP_001703569.1| transcription antitermination protein NusB [Mycobacterium abscessus
ATCC 19977]
gi|169241887|emb|CAM62915.1| Probable transcription antitermination factor NusB [Mycobacterium
abscessus]
Length = 173
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR AV L++ + + + E + + + HG
Sbjct: 28 RRKARKRAVDLLFEAEAREMTAAGVADERRALA--------ASKPDIDPLNPYTVSVAHG 79
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + HID LISS L + W+ +RL + +ILR V EL+ VP V + E V +A
Sbjct: 80 VTEHAAHIDELISSHL-QGWTLARLPAVDRAILRVAVWELLHAQDVPEVVAVDEAVELAK 138
Query: 136 DFFYGDEPKFINAVLDKV 153
+ P F+N VL ++
Sbjct: 139 QLSTDESPAFVNGVLGQL 156
>gi|114776397|ref|ZP_01451442.1| transcription antitermination protein NusB [Mariprofundus
ferrooxydans PV-1]
gi|114553227|gb|EAU55625.1| transcription antitermination protein NusB [Mariprofundus
ferrooxydans PV-1]
Length = 145
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 9/150 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + ++ LY + I D + R
Sbjct: 1 MANRHQARESVLETLYAWSSAQQDSGMI--------PELLASRLQHEERADQDESYLREA 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++G+ D +D LI S + I +++R V E+ +P VII+E +
Sbjct: 53 VYGITDHTDALDELI-KTAVRGRSLRSVAQIEINVIRLAVWEMQNRLEIPYRVIINEALE 111
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ D+ FIN VLD ++++
Sbjct: 112 LTRDYAGEPPRGFINGVLDNLAKQLRPAEM 141
>gi|150016575|ref|YP_001308829.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
gi|189035883|sp|A6LU43|NUSB_CLOB8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|149903040|gb|ABR33873.1| NusB antitermination factor [Clostridium beijerinckii NCIMB 8052]
Length = 133
Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 10/139 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++R A++ L+ + + + + + + E +DL + + ++
Sbjct: 2 NRKLSREKAMELLFGMTLSKDTMEDAVEAFVENY---------EGDIKEIDLTYVKQVLI 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K+ ID +I L W R+ + SILR EL+ VP V I+E + I
Sbjct: 53 GVNNNKEAIDKVIQENL-HNWKIERISKVNLSILRIATYELLYDKEVPRGVAINEALEIT 111
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ FIN VLDK+
Sbjct: 112 RRYSDEKSVSFINGVLDKI 130
>gi|24380206|ref|NP_722161.1| transcription antitermination protein NusB [Streptococcus mutans
UA159]
gi|32171640|sp|Q8DSE9|NUSB_STRMU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|24378212|gb|AAN59467.1|AE015011_6 putative transcription termination factor [Streptococcus mutans
UA159]
Length = 142
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A QAL+ ++ G + T + + D + E+ + +
Sbjct: 6 VDSRRDLRERAFQALFSLEFGGDNLTAA-----RFAYTYDKNEEEEAELP----LFLLTL 56
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV D ++ ID IS L W+ SRL +I S+LR G+ E+ P V ++E +
Sbjct: 57 IQGVSDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIE 116
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + KFIN VL + + +
Sbjct: 117 IAKKYSDEKSSKFINGVLSQFVLERK 142
>gi|299143829|ref|ZP_07036909.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518314|gb|EFI42053.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 141
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR+ +Q LYQ+DI +++ ++ + + + ++ I
Sbjct: 2 SRKKARIGQMQVLYQMDITDDFSSDGLNTFLENF-----------EFSEEEKDYINSTIP 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ ++ID I S L E WS +RL + +LR + E++ +P EV I+E V I+
Sbjct: 51 EIIKNLENIDQTIQSHL-EGWSLNRLAKVDKEVLRIAIYEILYRDDIPEEVSINEAVEIS 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F + KFIN +L + R ++
Sbjct: 110 KQFGSSESSKFINGILGSIYRSMHVENQ 137
>gi|212702193|ref|ZP_03310321.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
gi|212674398|gb|EEB34881.1| hypothetical protein DESPIG_00204 [Desulfovibrio piger ATCC 29098]
Length = 157
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 12 LSHRRGIARL----AAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+S + +R A Q LY + S ++ + + ES +
Sbjct: 1 MSKGKSASRRGERAQAFQVLYGLSFADATSLEDVRRAFLQ------SPDHQESEEGELPS 54
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV R+ +D IS + W R+ + ++LR + EL+ VP +V
Sbjct: 55 GFSWDLVQGVWSRRDELDKTISRF-SRNWRVDRMGRVELTLLRLAMYELLYRQDVPAKVA 113
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
I+E + + F + F+N +LD ++ E
Sbjct: 114 INEALELTRQFGEDNATSFVNGILDAAAKALE 145
>gi|290579819|ref|YP_003484211.1| putative transcription termination factor [Streptococcus mutans
NN2025]
gi|254996718|dbj|BAH87319.1| putative transcription termination factor [Streptococcus mutans
NN2025]
Length = 147
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A QAL+ ++ G + T + + D + E+ + +
Sbjct: 11 VDSRRDLRERAFQALFSLEFGGDNLTAA-----RFAYTYDKNEEEEAELP----LFLLTL 61
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV D ++ ID IS L W+ SRL +I S+LR G+ E+ P V ++E +
Sbjct: 62 IQGVYDCRREIDKNISIHLKSGWTLSRLTLIDKSLLRLGLYEIKYHKETPERVALNEIIE 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + KFIN VL + + +
Sbjct: 122 IAKKYSDEKSSKFINGVLSQFVLERK 147
>gi|262283503|ref|ZP_06061269.1| transcription antitermination protein NusB [Streptococcus sp.
2_1_36FAA]
gi|262260994|gb|EEY79694.1| transcription antitermination protein NusB [Streptococcus sp.
2_1_36FAA]
Length = 141
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A QAL ++ + + Y + E VE +
Sbjct: 5 MVDSRRDLRERAFQALMSLE---YDEDIVEACRFAYLHDKEEEEQVELPI------FLLN 55
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GVM K +D I+ L W+ RL ++ +ILR G+ EL+E P V ++E +
Sbjct: 56 LVNGVMQSKSVLDDKITQYLKAGWTLDRLTLVEKNILRLGLYELLEYDETPQLVAVNEAI 115
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+A F KFIN +L + +E
Sbjct: 116 ELAKKFSDEKSSKFINGILSQFVTEE 141
>gi|187251633|ref|YP_001876115.1| NusB antitermination factor [Elusimicrobium minutum Pei191]
gi|254772640|sp|B2KE32|NUSB_ELUMP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|186971793|gb|ACC98778.1| NusB anti-termination factor [Elusimicrobium minutum Pei191]
Length = 140
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +AR A+Q LY D +I E ++ D + I
Sbjct: 1 MGNRRLAREHALQTLYYADTGKTQGKDINEYKEDFKDSLDAAGFE----------FCSGI 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYV 131
I G ++ + +D +I S + WS +R+ ++ SILR E++ PV +I E +
Sbjct: 51 IDGALEHQAELDKII-SAYAKNWSLNRMSVVDRSILRMAAYEMLFSPENTPVAAVIDEAI 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+A F + +FIN +LD++ ++ +
Sbjct: 110 ELAKKFSTENSSRFINGLLDQIKKERK 136
>gi|332981364|ref|YP_004462805.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
gi|332699042|gb|AEE95983.1| NusB antitermination factor [Mahella australiensis 50-1 BON]
Length = 134
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AV +Y+ID+ + +I+ + D ++ I+
Sbjct: 2 SRRQARQDAVCLMYEIDMQDGDSDDILERFFN-----------THALNEADAKYIDEIVK 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ + ID I L + +ILR E++ SVP V I E V +A
Sbjct: 51 LALEHRDDIDRGIEQSC--GRKIEYLAKMDLAILRIAAAEMLYMPSVPHRVSIDEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ P FIN VL + ++
Sbjct: 109 KRYGDDMSPTFINGVLAGLMKQL 131
>gi|315282224|ref|ZP_07870678.1| transcription antitermination factor NusB [Listeria marthii FSL
S4-120]
gi|313614126|gb|EFR87816.1| transcription antitermination factor NusB [Listeria marthii FSL
S4-120]
Length = 128
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRMDRLSKVDLSLLRVSVYEIKYLDDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|171912809|ref|ZP_02928279.1| NusB antitermination factor [Verrucomicrobium spinosum DSM 4136]
Length = 145
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R AA+Q L+ D+ G + + T ++
Sbjct: 5 KRREGRQAAMQFLFAHDVHGKVEDTDRAAFWTLHSATQD-----------IRAHAESLVT 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + ID I++ L E + F RL ++ +ILR V E++ VPV V+I+E V I+
Sbjct: 54 GIKTHQVQIDDCIAATL-ENFRFERLGVVDRNILRLAVYEMLHTE-VPVPVVINEAVEIS 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
F F+N VLDK++++ R +
Sbjct: 112 KVFGDTQTRAFVNGVLDKIAKRI-PGRQAPSAPQ 144
>gi|154502455|ref|ZP_02039515.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
gi|153796851|gb|EDN79271.1| hypothetical protein RUMGNA_00268 [Ruminococcus gnavus ATCC 29149]
Length = 132
Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+QI+ E + + + D E+ + +
Sbjct: 3 RTELREHIFKMLFQIEFN---------TLEEMPKHLELYFEELTSAKEKDKEYIQKKLEA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+++ + ID +++ W SR++ + +ILR V E+ VPV+V I+E V +A
Sbjct: 54 VVEKLEEIDAILNEK-ATGWKTSRMNKVDLAILRLAVYEIKWDDDVPVKVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
F + P F+N VL K++
Sbjct: 113 KFSGEEGPAFVNGVLAKIA 131
>gi|222153656|ref|YP_002562833.1| transcription antitermination protein NusB [Streptococcus uberis
0140J]
gi|254772659|sp|B9DVJ4|NUSB_STRU0 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|222114469|emb|CAR43313.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus uberis 0140J]
Length = 142
Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ ++ G + + + D D E + ++
Sbjct: 7 NSRRDLRERAFQALFNMEHGGDFLSA-----SQFAYDYDKVSDQEHDIP----AFLLTLV 57
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GV++ K +D +I L WS RL + ++LR G+ E+ P V ++E + I
Sbjct: 58 NGVVNHKDELDAIIKEHLKAGWSIERLTLTDRTMLRLGLYEIKFFEETPDRVALNEIIEI 117
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A + KFIN +L + E
Sbjct: 118 AKKYSDETSAKFINGLLSQFVSDSE 142
>gi|152976231|ref|YP_001375748.1| sun protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024983|gb|ABS22753.1| sun protein [Bacillus cytotoxicus NVH 391-98]
Length = 444
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLMQVEKSG-----------AYSNLLLNHLIEKSTIHKKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L ++D + +LR + +++ VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLR-----KKVDAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|262280550|ref|ZP_06058334.1| transcription termination L factor [Acinetobacter calcoaceticus
RUH2202]
gi|262258328|gb|EEY77062.1| transcription termination L factor [Acinetobacter calcoaceticus
RUH2202]
Length = 149
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR AVQ +Y+ + EI + E+ VDL ++ ++
Sbjct: 12 KRKARRFAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQ 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ ++ +D L+ L + LD + + LR G EL + VP V++ E + +A
Sbjct: 61 VIAQRDDLDALLIPVLDRE--LDALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K+IN VLD++S
Sbjct: 119 HFGGADSHKYINGVLDRLSSTLRSAE 144
>gi|291456359|ref|ZP_06595749.1| transcription antitermination factor NusB [Bifidobacterium breve
DSM 20213]
gi|291381636|gb|EFE89154.1| transcription antitermination factor NusB [Bifidobacterium breve
DSM 20213]
Length = 176
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G ++ E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQDILSLLDERIAH-----------PGAQTPLPDYAIDIVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A
Sbjct: 52 VAEHRRQIDMTLDDH-STGWKVRRMGVVDRNILRIAAWEILFNDEVPDKVAIDEALALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
D P FI+ +L V + + +G V
Sbjct: 111 TLCDDDSPAFIHGLLSAVCNAKNTEPAGSVD 141
>gi|209559915|ref|YP_002286387.1| transcription antitermination protein NusB [Streptococcus pyogenes
NZ131]
gi|238055478|sp|B5XI30|NUSB_STRPZ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|209541116|gb|ACI61692.1| N utilization substance B-like protein [Streptococcus pyogenes
NZ131]
Length = 150
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143
>gi|21674526|ref|NP_662591.1| N utilization substance protein B [Chlorobium tepidum TLS]
gi|28201843|sp|Q8KBS4|NUSB_CHLTE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21647719|gb|AAM72933.1| N utilization substance protein B [Chlorobium tepidum TLS]
Length = 164
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ T + T D ++F
Sbjct: 1 MKTYRRQLREKIIQALYTLELRDVDTDSAANWLLTKEIMDDPNAM----------KFFNH 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ ++ ++ ID I+ T W SR+ +I +ILR + E++ C +P +V I+E +
Sbjct: 51 LMQSIVRNREEIDRYIAKH-TFNWDMSRIAIIDKNILRMALAEILYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + +
Sbjct: 110 EIAKKFSSTDKSSKFVNGILDAIFNDMKAE 139
>gi|296123835|ref|YP_003631613.1| transcription antitermination factor NusB [Planctomyces limnophilus
DSM 3776]
gi|296016175|gb|ADG69414.1| transcription antitermination factor NusB [Planctomyces limnophilus
DSM 3776]
Length = 163
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ +S RR AR +Q LY D+ +E R EL E++ +
Sbjct: 1 MSMS-RRHKAREVVLQMLYLKDLNPD------VGFEQIRQMIQAELPDETL-----SRFA 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ G M+ + +D I WS SR+ ++LR G EL++ P V+I E
Sbjct: 49 WGLFSGAMEFRPALDKKIEEA-AVNWSLSRMAPTDRNVLRLGAYELLQTD-TPHRVVIDE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ +A F + F+N +LD++ E+ R+ +
Sbjct: 107 ALELAKSFGGANSGSFVNGILDRLLPPEKRARAAKPTE 144
>gi|302874807|ref|YP_003843440.1| NusB antitermination factor [Clostridium cellulovorans 743B]
gi|307690576|ref|ZP_07633022.1| transcription antitermination protein NusB [Clostridium
cellulovorans 743B]
gi|302577664|gb|ADL51676.1| NusB antitermination factor [Clostridium cellulovorans 743B]
Length = 134
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A++ Y + I +I ++ E + VD + I+
Sbjct: 2 NRRKTREIAIKLTYSLMIQQIDYKTVIENFKE------VEDKEDEDLKDVDFTFVETILS 55
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + K + + L+S L W +R+ + +IL + E+ +P V I+E V IA
Sbjct: 56 GISENKSNYEELVSQNL-IGWKLNRISKLNLAILLVAIYEIKNIDDIPKAVSINEAVEIA 114
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ P FIN++LDK+
Sbjct: 115 KKYSDDKAPNFINSILDKI 133
>gi|167037510|ref|YP_001665088.1| transcription antitermination protein NusB [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040172|ref|YP_001663157.1| transcription antitermination protein NusB [Thermoanaerobacter sp.
X514]
gi|256752868|ref|ZP_05493706.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300914255|ref|ZP_07131571.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
gi|307724509|ref|YP_003904260.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
gi|320115924|ref|YP_004186083.1| transcription antitermination factor NusB [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|238687554|sp|B0K0U6|NUSB_THEPX RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238687696|sp|B0K9D9|NUSB_THEP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166854412|gb|ABY92821.1| NusB antitermination factor [Thermoanaerobacter sp. X514]
gi|166856344|gb|ABY94752.1| NusB antitermination factor [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256748245|gb|EEU61311.1| NusB antitermination factor [Thermoanaerobacter ethanolicus CCSD1]
gi|300889190|gb|EFK84336.1| NusB antitermination factor [Thermoanaerobacter sp. X561]
gi|307581570|gb|ADN54969.1| NusB antitermination factor [Thermoanaerobacter sp. X513]
gi|319929015|gb|ADV79700.1| transcription antitermination factor NusB [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 140
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ D+ ++I+ + + E+ +
Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKILENF------------YKEKDPGEQKEYIENTVI 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA
Sbjct: 50 GAIEHLEEIDKEI-ERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D P FIN +L R E ++
Sbjct: 108 KKYSTEDSPAFINGLLGAFVRDEGLEE 134
>gi|289434640|ref|YP_003464512.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|315303024|ref|ZP_07873735.1| transcription antitermination factor NusB [Listeria ivanovii FSL
F6-596]
gi|289170884|emb|CBH27426.1| transcription antitermination factor [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313628606|gb|EFR97028.1| transcription antitermination factor NusB [Listeria ivanovii FSL
F6-596]
gi|313633359|gb|EFS00202.1| transcription antitermination factor NusB [Listeria seeligeri FSL
N1-067]
gi|313638045|gb|EFS03323.1| transcription antitermination factor NusB [Listeria seeligeri FSL
S4-171]
Length = 128
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 17/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVM K ID +I L W RL + S+LR V E+ VP V ++E + IA
Sbjct: 46 GVMANKAEIDAIIEPNLDN-WRMDRLSKVDLSLLRLSVYEINYLSDVPNRVSLNESIEIA 104
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ KFIN VL ++ +++
Sbjct: 105 KIYSDEKSSKFINGVLANIAPEDK 128
>gi|268680366|ref|YP_003304797.1| transcription antitermination factor NusB [Sulfurospirillum
deleyianum DSM 6946]
gi|268618397|gb|ACZ12762.1| transcription antitermination factor NusB [Sulfurospirillum
deleyianum DSM 6946]
Length = 136
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + + LY DI + I EL E + E+ +
Sbjct: 1 MATRHQARESIITLLYAEDIGNAGIDKFID-----------ELFEEKKIRNQQKEFALGL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV ID I+ L E W+ S + M+ +ILR G E++ + V+I+E +
Sbjct: 50 YQGVKAHLSVIDEAINRHLKE-WNLSEIGMLERAILRLGGYEILYSE-LDNAVVINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+A PKFIN VLD + ++ E K
Sbjct: 108 LAKKLCNETSPKFINGVLDAICKEGEAK 135
>gi|153814701|ref|ZP_01967369.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
gi|317500231|ref|ZP_07958461.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 8_1_57FAA]
gi|331087539|ref|ZP_08336471.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 3_1_46FAA]
gi|145847732|gb|EDK24650.1| hypothetical protein RUMTOR_00916 [Ruminococcus torques ATCC 27756]
gi|316898357|gb|EFV20398.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 8_1_57FAA]
gi|330401757|gb|EGG81335.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 135
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+QI+ + + D ++ +
Sbjct: 3 RTELREHIFKMLFQIEFNDS---------VDMPENLNYYFETLEDAKEKDKQYIQNKYEA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID L++ W +R++ + SILR + E+ VP +V I+E V +A
Sbjct: 54 ILSHIEEIDGLLNEN-ATGWKTTRMNKVDLSILRLALYEIKWDEDVPAKVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
F + F+N VL K +++E
Sbjct: 113 RFGGDNSSSFVNGVLAKFAKQE 134
>gi|242309730|ref|ZP_04808885.1| transcription antitermination protein NusB [Helicobacter pullorum
MIT 98-5489]
gi|239523731|gb|EEQ63597.1| transcription antitermination protein NusB [Helicobacter pullorum
MIT 98-5489]
Length = 148
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 13/146 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR VQ LY S E I ++ F E + E+ +
Sbjct: 1 MATRSHAREVVVQLLYAY----GSGNEKIGKFADEIF-------EEQKIKNNQKEFATSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ + +DL I S + W FS++ + +ILR GV E+I + + I+E +
Sbjct: 50 FEGVIANLEALDLRI-SHQLKDWDFSKIGDMEKAILRLGVYEIIFN-HLSKAIAINEALE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A F + KFIN VLD +++ +
Sbjct: 108 LAKSFGNENSAKFINGVLDGIAKNLQ 133
>gi|81428290|ref|YP_395290.1| transcription antitermination protein NusB [Lactobacillus sakei
subsp. sakei 23K]
gi|119390779|sp|Q38XV0|NUSB_LACSS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78609932|emb|CAI54979.1| Ribosomal RNA transcription antitermination protein NusB
[Lactobacillus sakei subsp. sakei 23K]
Length = 142
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 6/144 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R R AA Q L+ ++ + T + D E V +
Sbjct: 2 PNFNRHQIRQAAFQVLFTLNANQSLELEDAYQAVLTM-----DQFDAEEVTPVEVPAYLA 56
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + + +D ++ L + W SRL ILR G+ E+ P +V ++E
Sbjct: 57 FLVSGVTENQAALDAALTPYLKKGWQLSRLAKPDLIILRLGLFEMQNSTEAPAKVALNEA 116
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
+ +A F FIN VL K
Sbjct: 117 LELAKQFTDDQAKGFINGVLSKFV 140
>gi|19746754|ref|NP_607890.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS8232]
gi|21911108|ref|NP_665376.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS315]
gi|139473181|ref|YP_001127896.1| transcription antitermination protein NusB [Streptococcus pyogenes
str. Manfredo]
gi|54037927|sp|P65585|NUSB_STRP8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54041677|sp|P65584|NUSB_STRP3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390833|sp|Q1JA39|NUSB_STRPB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390834|sp|Q1JK87|NUSB_STRPC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390837|sp|Q48RL8|NUSB_STRPM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215723|sp|A2RCS4|NUSB_STRPG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|19748985|gb|AAL98389.1| putative transcriptional terminator [Streptococcus pyogenes
MGAS8232]
gi|21905318|gb|AAM80179.1| putative transcriptional terminator [Streptococcus pyogenes
MGAS315]
gi|134271427|emb|CAM29647.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pyogenes str. Manfredo]
Length = 150
Score = 91.4 bits (225), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143
>gi|295091953|emb|CBK78060.1| ribosomal RNA small subunit methyltransferase RsmB [Clostridium cf.
saccharolyticum K10]
Length = 472
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 22/169 (13%)
Query: 1 MTIQDNKKDLKLSHR--RGI--------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50
MT ++K R + AR A L ++ + ++
Sbjct: 1 MTRPGSRKPENGKQREGKKAGSLQRMPDAREIAADILMEVLEKKQYSHVVL--------- 51
Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
L + + + ++ G ++R ID +I S + ++ + +ILR
Sbjct: 52 -LNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108
Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
GV ++ VP +E V + + F+N VL ++RK+E
Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLKGFVNGVLRNIARKKEE 157
>gi|323484853|ref|ZP_08090209.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14163]
gi|323693777|ref|ZP_08107972.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14673]
gi|323401849|gb|EGA94191.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14163]
gi|323502163|gb|EGB18030.1| transcription antitermination factor NusB [Clostridium symbiosum
WAL-14673]
Length = 171
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYET-----YRFCADTELDVESVYLHVDLEW 68
R R + L+ D G + ++ + ++E+ D +
Sbjct: 27 RRELREHCFKLLFCADFYPEGETKEQMEEYFTEPVEEVSAPGGESEILHSPALDVFDGGY 86
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ ++++ +D I+ + W+ R+ + +ILR + E+ VP +V I+
Sbjct: 87 VTNKVERIIEKIPDLDSRINEI-AKGWTTKRMGKVELTILRLALFEIQYDEDVPEKVAIN 145
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F D P F+N +L K+
Sbjct: 146 EAVELAKKFGGDDSPSFVNGILAKLV 171
>gi|170782398|ref|YP_001710731.1| transcription termination protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|189035882|sp|B0REX0|NUSB_CLAMS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169156967|emb|CAQ02136.1| transcription termination protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 137
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ LY DI G S ++ + + + R I
Sbjct: 1 MSARTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWAYAREI 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G ++ + ID LI + W+ +R+ + +ILR G+ E++ VP V ISE V
Sbjct: 53 AEGFVEHQDEIDELI-ETYSVNWTLARMPAVDRAILRIGIWEILFNADVPDGVAISESVD 111
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + F+N +L +++
Sbjct: 112 LASSLSTDESASFVNGMLARIA 133
>gi|283797531|ref|ZP_06346684.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
gi|291074900|gb|EFE12264.1| transcription antitermination factor NusB [Clostridium sp. M62/1]
Length = 147
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCA-----DTELDVESVYLHVDLEW 68
R R + L+ D G + +I + R EL D +
Sbjct: 3 RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ + V+++ +D I+ E W+ R+ + +ILR + E+ VP +V I+
Sbjct: 63 VKNKVEKVLEKLTELDTAINET-AEGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F + P F+N +L K+
Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147
>gi|291550246|emb|CBL26508.1| transcription antitermination factor NusB [Ruminococcus torques
L2-14]
Length = 139
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+QI+ + + D E+ +
Sbjct: 3 RKELREHIFKMLFQIEFNDP---------QEMPEQIEYYFSTLEDAADKDKEYIKRKYAA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+++ + ID LI++ + W +R++ + SILR V E+ VPV V I+E V +
Sbjct: 54 VLEKTEEIDELINAN-AKGWKTTRMNKVDLSILRLAVYEMKWDDEVPVGVAINEAVELTK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
F + P FIN VL K++R E +
Sbjct: 113 TFSSDEAPSFINGVLGKIARSLEETK 138
>gi|295090868|emb|CBK76975.1| transcription antitermination factor NusB [Clostridium cf.
saccharolyticum K10]
Length = 147
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 8/146 (5%)
Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCA-----DTELDVESVYLHVDLEW 68
R R + L+ D G + +I + R EL D +
Sbjct: 3 RRELREHCFKLLFCADFYPEGETKEQIEQYFTEPREDDYTSDGVYELIHCPELDVYDSGY 62
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ + V+++ +D I+ + W+ R+ + +ILR + E+ VP +V I+
Sbjct: 63 VKNKVEKVLEKLTELDTAINET-AKGWTTRRMGKVELTILRLALFEIRYDEEVPDKVAIN 121
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F + P F+N +L K+
Sbjct: 122 EAVELAKKFGGDESPAFVNGILAKLV 147
>gi|225869187|ref|YP_002745135.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. zooepidemicus]
gi|259514901|sp|C0MED0|NUSB_STRS7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|225702463|emb|CAX00364.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus equi subsp. zooepidemicus]
Length = 150
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
H R R A QAL+ +++ G Y+ + AD + E + ++
Sbjct: 7 HSRRDLRERAFQALFTMEMGGDFLLASQFAYDYDKEVADDKQPSELPV------FLLNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+GVMD K +D +I L WS RL ++ ++LR G+ E+ P V ++E + I
Sbjct: 61 NGVMDHKAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEI 120
Query: 134 AHDFFYGDEPKFINAVL 150
A + KFIN +L
Sbjct: 121 AKKYSDDTSAKFINGLL 137
>gi|32473208|ref|NP_866202.1| transcription antitermination protein NusB [Rhodopirellula baltica
SH 1]
gi|39931772|sp|Q7USA9|NUSB_RHOBA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|32397887|emb|CAD73888.1| probable N utilization substance protein B homolog [Rhodopirellula
baltica SH 1]
gi|327540459|gb|EGF27044.1| transcription antitermination protein NusB [Rhodopirellula baltica
WH47]
Length = 145
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 12/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR +Q LY+ D+ ++ R V ++ +
Sbjct: 5 MSTRRRAREIVLQLLYEADLNDWRDAATSRKFIRSRLQG----------RKVLTDFAAEL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G M R+ ID ++ + W+ R+ + ++LR G E++ P +V ISE +
Sbjct: 55 LDGTMARRDDIDAKLTKL-STNWALHRMPVTDRNVLRLGAYEILYS-GTPGQVAISEALT 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A + + P+FIN VLD++ + S
Sbjct: 113 LAKRYGGENSPRFINGVLDRLFKYHSNPES 142
>gi|172056940|ref|YP_001813400.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
gi|171989461|gb|ACB60383.1| NusB antitermination factor [Exiguobacterium sibiricum 255-15]
Length = 141
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R +AR AVQ+L+Q+++ S E I + +
Sbjct: 1 MMKRHMARELAVQSLFQMELSDLSAQEAIEFAVE---------------GKEYDTFVTRL 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV K ID + + L WSF R+ I +ILR V EL+ +PV V I+E +
Sbjct: 46 VEGVEANKPEIDQKLRAALVN-WSFERIGNIERTILRLAVYELLFEAKIPVRVTINEAIE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ F + K +N VL KV+++ E
Sbjct: 105 LTKAFADEEATKIVNGVLGKVAQEVEQN 132
>gi|145295740|ref|YP_001138561.1| transcription antitermination protein NusB [Corynebacterium
glutamicum R]
gi|140845660|dbj|BAF54659.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 212
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + ++D K R AR+ AV L++ + II + + +
Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDT-------NPIV 53
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP
Sbjct: 54 APVAEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNTDVP 113
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI--KRSGCVSAI 168
V I E V IA ++ +INA LD ++ K E +R+ A+
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANPEAV 161
>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA++AL I+ + I+ D +++GV+
Sbjct: 2 NAREAALKALQAIEPGKEKSDRIVHAILDRA-----------TMNRQDRALTTELVNGVL 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ ID +IS F + +L +ILR GV +L+ +P +SE V +A +
Sbjct: 51 RMRKKIDFIISKFY--HHRFEKAAPVLQNILRLGVYQLLFLEKIPEWAAVSECVDLARKY 108
Query: 138 FYGDEPKFINAVLDKV 153
K +N VL K+
Sbjct: 109 KGERMAKLVNGVLRKI 124
>gi|300934532|ref|ZP_07149788.1| transcription antitermination protein NusB [Corynebacterium
resistens DSM 45100]
Length = 204
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 7/153 (4%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ ++ + + R AR AV +++ + +I+ E +
Sbjct: 1 MSEDIINYRRHGSRFKARRRAVDIIFEAEFRDLDPVKIVEERVELAKDPANAV------- 53
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
E+ I+ G ID IS L +W RL + ++LR EL+ VP
Sbjct: 54 KPVPEYTATIVEGTATNLDAIDDAISMNLASEWRLDRLPAVDRAVLRVAAWELLFNDEVP 113
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+V ++E + +A + + P ++NAVLD VSR
Sbjct: 114 NQVAMTEGIELAAQYSHDKAPAYVNAVLDGVSR 146
>gi|254458717|ref|ZP_05072141.1| transcription antitermination factor NusB [Campylobacterales
bacterium GD 1]
gi|207084483|gb|EDZ61771.1| transcription antitermination factor NusB [Campylobacterales
bacterium GD 1]
Length = 134
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+A V LY D+ S + E+ E + ++ +
Sbjct: 1 MATRHHARMAVVSLLYAYDLGNGSIAD-----------HTDEILEEKKIRNKQKDFALAL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GVM+ + D I L E W F RL I + LR E++ + V+I+E V
Sbjct: 50 FEGVMENLEACDKAIIEHLKE-WDFERLGAIERATLRLATYEILFGE-LDSAVVINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
I F PKFIN VLD +S+ +
Sbjct: 108 ITKAFGTEQSPKFINGVLDAISKDK 132
>gi|283797834|ref|ZP_06346987.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
M62/1]
gi|291074522|gb|EFE11886.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
M62/1]
Length = 472
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 22/169 (13%)
Query: 1 MTIQDNKKDLKLSHR--RGI--------ARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50
MT ++K R + AR A L ++ + ++
Sbjct: 1 MTRPGSRKPENGKQREGKKAGSPQRMPDAREIAADILMEVLEKKQYSHVVL--------- 51
Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
L + + + ++ G ++R ID +I S + ++ + +ILR
Sbjct: 52 -LNALKKYQYLEKQERSFIKRVVDGTLERLMQIDFIIESFSST--PLRKMKPTVRTILRM 108
Query: 111 GVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
GV ++ VP +E V + + F+N VL ++RK+E
Sbjct: 109 GVYQICYMDRVPDSAACNEAVKLTVKRGFSGLKGFVNGVLRNIARKKEE 157
>gi|87308019|ref|ZP_01090161.1| probable N utilization substance protein B-like [Blastopirellula
marina DSM 3645]
gi|87289101|gb|EAQ80993.1| probable N utilization substance protein B-like [Blastopirellula
marina DSM 3645]
Length = 137
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R R +Q LYQ D+ + + + R +L + + R +
Sbjct: 1 MSKRSRVREVVLQILYQEDLNPEADIGVSERFLRGRLKHTEDL----------VAFGRSL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV ++ ID I E WS +R+ + ++LR G E++ P V I+E V
Sbjct: 51 LVGVRLHRKAIDAKI-EAFAENWSLARMAVTDRNVLRIGAFEILFSE-TPDRVAINEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
++ F P+F+N +LD+V + ++
Sbjct: 109 LSKRFGSKHSPQFVNGLLDRVLKSKQT 135
>gi|227499084|ref|ZP_03929221.1| NusB antitermination factor [Acidaminococcus sp. D21]
gi|226904533|gb|EEH90451.1| NusB antitermination factor [Acidaminococcus sp. D21]
Length = 140
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+++L+ +D S + + E + D + ++
Sbjct: 2 SRREARTLAMKSLFSLDFTTDVSPLDTVKALL--------EDEDTPALPKDDENYAAALV 53
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVC 132
G + + ID ++ L+++W R+ + ++LR E+ + ISE V
Sbjct: 54 TGTREHLEAIDSVL-DTLSDEWKVKRMAGVDRNLLRMAAFEMYFSPQKIAPAIAISEAVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
IA + D P FIN +L + R
Sbjct: 113 IAKIYGGDDSPHFINGLLGTLVRN 136
>gi|238019375|ref|ZP_04599801.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
gi|237864074|gb|EEP65364.1| hypothetical protein VEIDISOL_01239 [Veillonella dispar ATCC 17748]
Length = 451
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL AV+AL I+ Y E + +D +F +++GV+ R
Sbjct: 13 RLLAVKAL-----------SDINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRR 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ++D +I +L ++ ILR G+ ++I VP ++E V +A +
Sbjct: 62 KNYLDAIIIHFAKR--PLKKLSSMVVEILRLGIYQIIYMDKVPESAAVNESVKLAKNL-T 118
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NAVL V R+ + G ++
Sbjct: 119 RGLSGFVNAVLRSVLRESDSISIGELAK 146
>gi|242373824|ref|ZP_04819398.1| transcription antitermination protein NusB [Staphylococcus
epidermidis M23864:W1]
gi|242348378|gb|EES39980.1| transcription antitermination protein NusB [Staphylococcus
epidermidis M23864:W1]
Length = 128
Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ + +D ++ ++
Sbjct: 2 SRKESRIQAFQTLFQLEMKDTDLT-----------ITEAINFIKDDHPELDFDFIHWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + WS RL ILR E++ P +VII+E V +
Sbjct: 51 GVKDHESVLDEKIKPHLKD-WSIERLLKSDRIILRMATFEMLHSD-TPEKVIINEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KFIN VL +
Sbjct: 109 KQFSDDDHYKFINGVLSNI 127
>gi|302343804|ref|YP_003808333.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
gi|301640417|gb|ADK85739.1| NusB antitermination factor [Desulfarculus baarsii DSM 2075]
Length = 142
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R ++R A++ LYQ++ ++ + + R ++ G
Sbjct: 4 RSLSRELALKVLYQMEHGDQDAEAALTVFAENF-----------AAPEKLFAYTRQLVLG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCIA 134
V ++ ID +++ + KW R+ + +ILR E+ P + ISE + ++
Sbjct: 53 VEQNRRRIDEMLNRV-SRKWRVERMSWVDRNILRLACYEIYLAPQPVPPKAAISEALDLS 111
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ FIN VLD +
Sbjct: 112 KRYAEDCSCSFINGVLDSLI 131
>gi|271964358|ref|YP_003338554.1| transcription antitermination factor NusB [Streptosporangium roseum
DSM 43021]
gi|270507533|gb|ACZ85811.1| transcription antitermination factor NusB [Streptosporangium roseum
DSM 43021]
Length = 136
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A+ L++ + +++E E+ I
Sbjct: 1 MSARGKARRRALDILFEAEARSQDPLSVLAERLERAE-------------PPVNEYTATI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID LI+ E W+ R+ + ++LR G EL+ VP V+ISE+V
Sbjct: 48 VEGVCRHRARIDELIT-TYAEGWTLDRMPAVDRNLLRGGTYELLWMPDVPEGVVISEWVS 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + + P+F+N ++ +
Sbjct: 107 LASELSTDESPQFVNGLMARF 127
>gi|269216070|ref|ZP_06159924.1| transcription antitermination factor NusB [Slackia exigua ATCC
700122]
gi|269130329|gb|EEZ61407.1| transcription antitermination factor NusB [Slackia exigua ATCC
700122]
Length = 218
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 12 LSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + R +A LYQ +IIG I+ + ++ E+
Sbjct: 1 MGKAKRQEHTFGRRSAASVLYQSEIIGKPVDRILE---------EGDIPEEAGLNE---- 47
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ R+++ G + ID +IS + W+ +R+ M+ +LR V E+ +VP+ V I
Sbjct: 48 YGRLLLLGFSAHRAEIDRIISER-SANWAVNRMPMVDRELLRITVYEMKYVDAVPIPVSI 106
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+E V IA +F D +FIN +L +V+R + + SG
Sbjct: 107 NEAVEIAKEFGGDDSYRFINGLLGRVARDLDEQASGS 143
>gi|239618474|ref|YP_002941796.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
gi|239507305|gb|ACR80792.1| NusB antitermination factor [Kosmotoga olearia TBF 19.5.1]
Length = 148
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R ++++Q D + F + + +
Sbjct: 8 QRRKIREIVFRSIFQYDFHKDFPAAMEYLERETAFYS---------LDKESKNRAKGYLM 58
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+++ ID +I++ L W+F RL I S+LR EL+ VP+EV ++E + I
Sbjct: 59 GIIEHLDEIDSIITAYLKN-WTFDRLASIDRSVLRLATYELLYVDDVPIEVTLNEAIEIT 117
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +E KF+N VLDK++++ +
Sbjct: 118 KKYGSQEEGKFVNGVLDKIAKERVSEE 144
>gi|226320701|ref|ZP_03796259.1| transcription antitermination factor NusB [Borrelia burgdorferi
29805]
gi|226233917|gb|EEH32640.1| transcription antitermination factor NusB [Borrelia burgdorferi
29805]
Length = 693
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIE-------NESIKSFYSSLVIGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 55 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136
>gi|56477452|ref|YP_159041.1| transcription antitermination protein NusB [Aromatoleum aromaticum
EbN1]
gi|81598767|sp|Q5P3H4|NUSB_AZOSE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|56313495|emb|CAI08140.1| N utilization substance protein B,transcription termination factor
[Aromatoleum aromaticum EbN1]
Length = 145
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +YQ + S + + S + D E F ++ G ++
Sbjct: 12 EFALQGIYQWLLSANSM-----------LLIEEHVSQVSGFDKADRELFISLLRGTLNNV 60
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ + + + L + +IL EL P VII+E + +A +
Sbjct: 61 DDLQAEFAPFI--HRAVHELSPVERAILLLATHELKHNLDTPYRVIINEAIELAKSYGGT 118
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D +F+N VLDK++ + +
Sbjct: 119 DGHRFVNGVLDKLATQLRVTE 139
>gi|117928511|ref|YP_873062.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
gi|166215656|sp|A0LUG6|NUSB_ACIC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|117648974|gb|ABK53076.1| NusB antitermination factor [Acidothermus cellulolyticus 11B]
Length = 145
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D+ EI++++ E+ +
Sbjct: 1 MPARTKARKRALDVLFEADLRAADPLEILADHTARA-------------DTPVPEYAVRL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID +I W+ R+ + +ILR + EL+ VP V+++E V
Sbjct: 48 VEGVAAHRAEIDRII-EQFAVGWTLQRMPTVDRNILRLAIYELLWVTEVPDAVVLAEAVK 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+A D + F+N VL V R + +
Sbjct: 107 LAQDLSTAESAPFVNGVLAAV-RANQATVTASPPP 140
>gi|312438007|gb|ADQ77078.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH60]
Length = 132
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFIKDDNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHEPVLDETISPYLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F D KFIN VL + K E
Sbjct: 109 KQFSDDDHYKFINGVLSNIKNKIE 132
>gi|317133047|ref|YP_004092361.1| sun protein [Ethanoligenens harbinense YUAN-3]
gi|315471026|gb|ADU27630.1| sun protein [Ethanoligenens harbinense YUAN-3]
Length = 436
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 13/140 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L +++ Y ++ D +++GV+
Sbjct: 3 QAREVALSVLLRMEQDDS-----------YSNLLLDAELEKAALSRRDAALATALVYGVV 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ +D L+ ++ +L +ILR G +L +P ++E V +A
Sbjct: 52 ARRITLDYLLE--TASGRPVQKMQPVLRAILRLGAYQLCYLDKIPARAAVNEAVQLAKKR 109
Query: 138 FYGDEPKFINAVLDKVSRKE 157
G F+N VL + RK
Sbjct: 110 HLGHASGFVNGVLRGLDRKR 129
>gi|82751129|ref|YP_416870.1| transcription antitermination protein NusB [Staphylococcus aureus
RF122]
gi|119390829|sp|Q2YYB7|NUSB_STAAB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|82656660|emb|CAI81086.1| probable N utilization substance protein B [Staphylococcus aureus
RF122]
Length = 129
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFIKDGNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHEPVLDETISPYLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D KFIN VL + +
Sbjct: 109 KQFSDDDHYKFINGVLSNIKK 129
>gi|15675648|ref|NP_269822.1| transcription antitermination protein NusB [Streptococcus pyogenes
M1 GAS]
gi|22095965|sp|Q99Y88|NUSB_STRP1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|13622860|gb|AAK34543.1| putative transcriptional terminator [Streptococcus pyogenes M1 GAS]
Length = 150
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDKTPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ KFIN +L + SG SA
Sbjct: 121 VKKYSDETSAKFINGLLSQYV-------SGAPSA 147
>gi|15924514|ref|NP_372048.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu50]
gi|15927105|ref|NP_374638.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus N315]
gi|21283206|ref|NP_646294.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MW2]
gi|49486361|ref|YP_043582.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57650481|ref|YP_186410.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus COL]
gi|88195331|ref|YP_500135.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148268009|ref|YP_001246952.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus JH9]
gi|150394076|ref|YP_001316751.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus JH1]
gi|151221641|ref|YP_001332463.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979843|ref|YP_001442102.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu3]
gi|221140055|ref|ZP_03564548.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253732178|ref|ZP_04866343.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253733226|ref|ZP_04867391.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006311|ref|ZP_05144912.2| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257425650|ref|ZP_05602074.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428311|ref|ZP_05604709.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430948|ref|ZP_05607328.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433637|ref|ZP_05609995.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus E1410]
gi|257436550|ref|ZP_05612594.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M876]
gi|257793601|ref|ZP_05642580.1| transcription antitermination factor NusB [Staphylococcus aureus
A9781]
gi|258411099|ref|ZP_05681379.1| transcription antitermination protein NusB [Staphylococcus aureus
A9763]
gi|258420097|ref|ZP_05683052.1| transcription antitermination factor NusB [Staphylococcus aureus
A9719]
gi|258423178|ref|ZP_05686071.1| transcription antitermination factor NusB [Staphylococcus aureus
A9635]
gi|258437357|ref|ZP_05689341.1| transcription antitermination protein NusB [Staphylococcus aureus
A9299]
gi|258443563|ref|ZP_05691902.1| transcription antitermination protein NusB [Staphylococcus aureus
A8115]
gi|258446770|ref|ZP_05694924.1| transcription antitermination protein NusB [Staphylococcus aureus
A6300]
gi|258448684|ref|ZP_05696796.1| transcription antitermination protein NusB [Staphylococcus aureus
A6224]
gi|258451182|ref|ZP_05699217.1| transcription antitermination protein NusB [Staphylococcus aureus
A5948]
gi|258453501|ref|ZP_05701479.1| transcription antitermination protein NusB [Staphylococcus aureus
A5937]
gi|262051191|ref|ZP_06023415.1| transcription antitermination protein NusB [Staphylococcus aureus
930918-3]
gi|269203154|ref|YP_003282423.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus ED98]
gi|282893026|ref|ZP_06301260.1| transcription antitermination factor NusB [Staphylococcus aureus
A8117]
gi|282911163|ref|ZP_06318965.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914332|ref|ZP_06322118.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M899]
gi|282916795|ref|ZP_06324553.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus D139]
gi|282919301|ref|ZP_06327036.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C427]
gi|282924626|ref|ZP_06332294.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C101]
gi|282924773|ref|ZP_06332440.1| transcription antitermination factor NusB [Staphylococcus aureus
A9765]
gi|282928996|ref|ZP_06336583.1| transcription antitermination factor NusB [Staphylococcus aureus
A10102]
gi|283770601|ref|ZP_06343493.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus H19]
gi|284024584|ref|ZP_06378982.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 132]
gi|293503407|ref|ZP_06667254.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510423|ref|ZP_06669129.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M809]
gi|293530963|ref|ZP_06671645.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M1015]
gi|295406647|ref|ZP_06816452.1| transcription antitermination factor NusB [Staphylococcus aureus
A8819]
gi|296275119|ref|ZP_06857626.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MR1]
gi|297207756|ref|ZP_06924191.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297245770|ref|ZP_06929635.1| transcription antitermination factor NusB [Staphylococcus aureus
A8796]
gi|300911837|ref|ZP_07129280.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH70]
gi|304380887|ref|ZP_07363547.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|54037923|sp|P65578|NUSB_STAAN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54037924|sp|P65579|NUSB_STAAW RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54041674|sp|P65577|NUSB_STAAM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|56749194|sp|Q6G941|NUSB_STAAS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71153022|sp|Q5HFP7|NUSB_STAAC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390828|sp|Q2FY45|NUSB_STAA8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215722|sp|A7X2Q3|NUSB_STAA1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|172048899|sp|A6QH69|NUSB_STAAE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035909|sp|A6U1Z6|NUSB_STAA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035910|sp|A5IT53|NUSB_STAA9 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|13701323|dbj|BAB42617.1| SA1355 [Staphylococcus aureus subsp. aureus N315]
gi|14247295|dbj|BAB57686.1| N utilization substance protein B homolog [Staphylococcus aureus
subsp. aureus Mu50]
gi|21204646|dbj|BAB95342.1| MW1477 [Staphylococcus aureus subsp. aureus MW2]
gi|49244804|emb|CAG43254.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus MSSA476]
gi|57284667|gb|AAW36761.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus COL]
gi|87202889|gb|ABD30699.1| N utilization substance protein B, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147741078|gb|ABQ49376.1| NusB antitermination factor [Staphylococcus aureus subsp. aureus
JH9]
gi|149946528|gb|ABR52464.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus JH1]
gi|150374441|dbj|BAF67701.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721978|dbj|BAF78395.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|253723967|gb|EES92696.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253728766|gb|EES97495.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus TCH130]
gi|257271344|gb|EEV03490.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275152|gb|EEV06639.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278378|gb|EEV09014.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281730|gb|EEV11867.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus E1410]
gi|257283901|gb|EEV14024.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M876]
gi|257787573|gb|EEV25913.1| transcription antitermination factor NusB [Staphylococcus aureus
A9781]
gi|257840249|gb|EEV64713.1| transcription antitermination protein NusB [Staphylococcus aureus
A9763]
gi|257843808|gb|EEV68202.1| transcription antitermination factor NusB [Staphylococcus aureus
A9719]
gi|257846628|gb|EEV70649.1| transcription antitermination factor NusB [Staphylococcus aureus
A9635]
gi|257848562|gb|EEV72550.1| transcription antitermination protein NusB [Staphylococcus aureus
A9299]
gi|257850969|gb|EEV74912.1| transcription antitermination protein NusB [Staphylococcus aureus
A8115]
gi|257854345|gb|EEV77294.1| transcription antitermination protein NusB [Staphylococcus aureus
A6300]
gi|257857962|gb|EEV80851.1| transcription antitermination protein NusB [Staphylococcus aureus
A6224]
gi|257861237|gb|EEV84050.1| transcription antitermination protein NusB [Staphylococcus aureus
A5948]
gi|257864232|gb|EEV86982.1| transcription antitermination protein NusB [Staphylococcus aureus
A5937]
gi|259160828|gb|EEW45848.1| transcription antitermination protein NusB [Staphylococcus aureus
930918-3]
gi|262075444|gb|ACY11417.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus ED98]
gi|269941015|emb|CBI49399.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus TW20]
gi|282313461|gb|EFB43856.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C101]
gi|282317111|gb|EFB47485.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C427]
gi|282319282|gb|EFB49634.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus D139]
gi|282321513|gb|EFB51838.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M899]
gi|282324858|gb|EFB55168.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282589403|gb|EFB94494.1| transcription antitermination factor NusB [Staphylococcus aureus
A10102]
gi|282592780|gb|EFB97786.1| transcription antitermination factor NusB [Staphylococcus aureus
A9765]
gi|282764344|gb|EFC04470.1| transcription antitermination factor NusB [Staphylococcus aureus
A8117]
gi|283460748|gb|EFC07838.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus H19]
gi|283470803|emb|CAQ50014.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ST398]
gi|285817207|gb|ADC37694.1| Transcription termination protein NusB [Staphylococcus aureus
04-02981]
gi|290920231|gb|EFD97297.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus M1015]
gi|291095073|gb|EFE25338.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466787|gb|EFF09307.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus M809]
gi|294968394|gb|EFG44418.1| transcription antitermination factor NusB [Staphylococcus aureus
A8819]
gi|296887773|gb|EFH26671.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297177421|gb|EFH36673.1| transcription antitermination factor NusB [Staphylococcus aureus
A8796]
gi|298694807|gb|ADI98029.1| N utilization substance protein B [Staphylococcus aureus subsp.
aureus ED133]
gi|300886083|gb|EFK81285.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333201|gb|ADL23394.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302751356|gb|ADL65533.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340614|gb|EFM06548.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829914|emb|CBX34756.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129802|gb|EFT85792.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS03]
gi|320140590|gb|EFW32444.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA131]
gi|323440422|gb|EGA98134.1| transcription antitermination protein NusB [Staphylococcus aureus
O11]
gi|323443196|gb|EGB00814.1| transcription antitermination protein NusB [Staphylococcus aureus
O46]
gi|329314202|gb|AEB88615.1| N utilization substance protein B -like protein [Staphylococcus
aureus subsp. aureus T0131]
gi|329727098|gb|EGG63554.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21172]
gi|329728323|gb|EGG64760.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21189]
gi|329730817|gb|EGG67195.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus 21193]
Length = 129
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFIKDDNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHEPVLDETISPYLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D KFIN VL + +
Sbjct: 109 KQFSDDDHYKFINGVLSNIKK 129
>gi|42522647|ref|NP_968027.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
HD100]
gi|81617954|sp|Q6MNX9|NUSB_BDEBA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39575179|emb|CAE79020.1| transcription termination factor nusB [Bdellovibrio bacteriovorus
HD100]
Length = 135
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 16 RGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+Q L+Q + S + + E + + +I+
Sbjct: 6 RRQARELALQVLFQTEFAPQISYQTFLEVF-------------EQSLDPEVITYADLIVT 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCI 133
GV K+ ID I + W R+ I +ILR V E+ + + I+E V I
Sbjct: 53 GVKSNKEAIDSKI-QASSAHWKVERMATIDRNILRIAVYEMRFAADPIKENIAINEAVEI 111
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + D F+N +LD+V +
Sbjct: 112 AKKYGTSDSGSFVNGLLDQVGK 133
>gi|313893390|ref|ZP_07826962.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442031|gb|EFR60451.1| ribosomal RNA small subunit methyltransferase B [Veillonella sp.
oral taxon 158 str. F0412]
Length = 451
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ N + + RL AV+AL I+ Y E +
Sbjct: 1 MSEVKNNQQQNI-------RLLAVKAL-----------SDINRNGAYANIKLQEYLQKYH 42
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+D +F +++GV+ RK ++D +I +L ++ ILR G+ ++I
Sbjct: 43 LSDLDRRFFTELVYGVIRRKNYLDAIIVHFAKR--PLKKLSSMVVEILRLGIYQIIYMDK 100
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
VP ++E V +A F+NAVL V R+ + G ++
Sbjct: 101 VPESAAVNESVKLAKKL-TRGLSGFVNAVLRSVLRECDSISIGELAK 146
>gi|116670816|ref|YP_831749.1| NusB antitermination factor [Arthrobacter sp. FB24]
gi|166215661|sp|A0JX79|NUSB_ARTS2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116610925|gb|ABK03649.1| NusB antitermination factor [Arthrobacter sp. FB24]
Length = 136
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A+ L++ + S +++ + + I
Sbjct: 1 MSARGKARNRALDVLFEAEQRSLSAFDVLRSRRE-------------KTDQIVNPYTLEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ + ID + ++ W+ R+ + ILR G EL+ VP V +SE V
Sbjct: 48 VEGVVSHQAAIDEFL-ETYSQGWTLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + P FIN +L ++ +
Sbjct: 107 LAKTLSTDESPSFINGLLGRLQQ 129
>gi|218296634|ref|ZP_03497352.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
gi|218242947|gb|EED09480.1| NusB antitermination factor [Thermus aquaticus Y51MC23]
Length = 151
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 4/146 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A++AL+ G E + + + + R ++ G
Sbjct: 2 RRRARELAMRALFAHTQGGVDLEEALRHALEEMGGEEEPYGD--PLDEEGVVFARRLLLG 59
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + I E W F ++ +ILR E++ P +I V IA+
Sbjct: 60 YKAHQEEV-DRILKETVEGWDFGQMAKTDLTILRLATYEMLY-EPTPFAPLIEVAVKIAN 117
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL ++ R+ +
Sbjct: 118 RYGGEHSGAFVNGVLGRLYRRIQEGE 143
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 91.0 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|193212152|ref|YP_001998105.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
gi|238692614|sp|B3QLL5|NUSB_CHLP8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|193085629|gb|ACF10905.1| NusB antitermination factor [Chlorobaculum parvum NCIB 8327]
Length = 164
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R +QALY +++ T + T D ++F
Sbjct: 1 MKTYRRQLREKIIQALYTLELRDVDTDSATNWLLTKEMADDPNAM----------KFFNH 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ ++D ++ ID I+ T W +R+ +I +ILR + E++ C +P +V I+E +
Sbjct: 51 LMKSIIDHREEIDRHIAKH-TFNWDMNRIAIIDKNILRMALAEILYCEDIPPKVSINEAI 109
Query: 132 CIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
IA F KF+N +LD + + +
Sbjct: 110 EIAKKFNSTEKSSKFVNGILDAIFNDLKAE 139
>gi|323705503|ref|ZP_08117078.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535405|gb|EGB25181.1| sun protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 447
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + LY I I + ++++Y + +D + + I+ G ++R
Sbjct: 4 RNTAFKILYDIIIKKGYSNIVLNKYLNN-----------NELRDIDKSFIKEIVFGTIER 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
KQ +D +I C ++ ++D + IL G+ ++I VP ISE V +A ++
Sbjct: 53 KQTLDQIIDHCSSKGS--KKIDNKILIILEMGLYQIIYMDKVPQYAAISEAVNLAKEYAG 110
Query: 140 GDEPKFINAVLDKVSRK 156
KF+NAVL +R
Sbjct: 111 IHASKFVNAVLRNYARN 127
>gi|261337964|ref|ZP_05965848.1| transcription antitermination factor NusB [Bifidobacterium gallicum
DSM 20093]
gi|270277459|gb|EFA23313.1| transcription antitermination factor NusB [Bifidobacterium gallicum
DSM 20093]
Length = 149
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D ++ E VE E+ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKDQDIKSLLQ-----------ERIVEPGAQTPLPEYAIEIVEG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D ++ +D +I+ + W R+ +I +ILR E+I +P +V I E + +A
Sbjct: 52 VADNRKDLDRIINEH-STGWKVWRMPVIDRNILRIAAWEIIHNDEIPDKVAIDEALNLAK 110
Query: 136 DFFYGDEPKFINAVLDKV 153
+ FI+ VL +
Sbjct: 111 TLSDDESLGFIHGVLSAI 128
>gi|305681487|ref|ZP_07404294.1| transcription antitermination factor NusB [Corynebacterium
matruchotii ATCC 14266]
gi|305659692|gb|EFM49192.1| transcription antitermination factor NusB [Corynebacterium
matruchotii ATCC 14266]
Length = 312
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V LY+ + I+ + V+ + + II GV + I
Sbjct: 34 VDVLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRI 86
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D +I+ L E W SR+ + +ILR V E+I VPV+ +SE V +A + P
Sbjct: 87 DDVIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAP 146
Query: 144 KFINAVLDKVSRKEEIKR 161
+INAVLD V + + R
Sbjct: 147 AYINAVLDSVVKNIDDLR 164
>gi|119390835|sp|Q1JF82|NUSB_STRPD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 150
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTREDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143
>gi|90961508|ref|YP_535424.1| transcription antitermination protein NusB [Lactobacillus
salivarius UCC118]
gi|227890595|ref|ZP_04008400.1| transcription antitermination protein NusB [Lactobacillus
salivarius ATCC 11741]
gi|119390778|sp|Q1WUJ4|NUSB_LACS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|90820702|gb|ABD99341.1| N utilization substance protein B [Lactobacillus salivarius UCC118]
gi|227867533|gb|EEJ74954.1| transcription antitermination protein NusB [Lactobacillus
salivarius ATCC 11741]
Length = 131
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A Q L+ + + +E I + ++ DL +
Sbjct: 1 MSLSRHDIRKIAFQTLFALGSNPDANSEDI-----------YQELLDEDNNDSDLSYLNE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV+D + ID+ I+ L + W+ RL+ ILR + E+ ++ ++E V
Sbjct: 50 LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVAS-KIAVNEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A +F KF+NA+L +
Sbjct: 109 ELAKEFSDDKSYKFVNAILQNLI 131
>gi|307244450|ref|ZP_07526559.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
gi|306492143|gb|EFM64187.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
stomatis DSM 17678]
Length = 447
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L+ I++ G + +++Y E+ D + +++G+++
Sbjct: 3 ARYLAYKILFDIEVNGNYSNMALNKYLN-----------EAGLDDQDKGFVTELVYGIIE 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+K+++D +I+ ++ + +LR GV +L+ V I+E V I
Sbjct: 52 KKRYLDYMINKVSKI--KVRKMQHSVKLVLRMGVYQLVYMDGVTDYAAINESVNIMKKL- 108
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
F+NAVL +SR + +
Sbjct: 109 DKRSASFVNAVLRNISRNLDEVK 131
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
Length = 444
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|119502844|ref|ZP_01624929.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2080]
gi|119461190|gb|EAW42280.1| transcription antitermination protein NusB [marine gamma
proteobacterium HTCC2080]
Length = 148
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A+Q LYQ + + EI +E+ +++ + HVD E++R ++ GV+
Sbjct: 17 FALQGLYQWSMTRANLAEIEAEF-----------RIDNDFSHVDGEYYRSLLTGVVQDAG 65
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L LD + ++LR G EL E VP V+I+E V +A F D
Sbjct: 66 DLDSSFEQLLDR--PLDELDPVERALLRLGTFELKERIDVPYRVVINESVALAKKFGATD 123
Query: 142 EPKFINAVLDKVSRKEEIKR 161
++IN VLDKV+R
Sbjct: 124 SYRYINGVLDKVARSYRQIE 143
>gi|148272974|ref|YP_001222535.1| putative antitermination protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|166215681|sp|A5CRY5|NUSB_CLAM3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|147830904|emb|CAN01848.1| putative antitermination protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 137
Score = 90.6 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ LY DI G S ++ + + ++ R I
Sbjct: 1 MSARTKARKRALDVLYVADIRGESIPATLA--------VEQQRAAAEPDRQASWQYAREI 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G + + ID LI + W+ +R+ + +ILR G+ E++ VP V ISE V
Sbjct: 53 AEGFVAHQDEIDELI-ETYSVNWTLARMPAVDRAILRIGIWEILFNADVPHGVAISESVD 111
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + F+N +L +++
Sbjct: 112 LASSLSTDESASFVNGMLARIA 133
>gi|303239358|ref|ZP_07325886.1| sun protein [Acetivibrio cellulolyticus CD2]
gi|302593144|gb|EFL62864.1| sun protein [Acetivibrio cellulolyticus CD2]
Length = 450
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ LY DI Y A + + +D + +++G +
Sbjct: 7 RETALKILY--DINKSGA---------YSNIALNKYLEDKALSGLDKAFITELVYGTLKW 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I + ++L + +ILR GV +++ +P +E V +A + +
Sbjct: 56 RLSIDYIIDQFSSV--KINKLSPWILNILRLGVYQIVYMSKIPESAACNESVNLAKRYGH 113
Query: 140 GDEPKFINAVLDKVSRKEE 158
+++NA+L V+R +
Sbjct: 114 SASSRYVNAMLRNVARSKN 132
>gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|269956498|ref|YP_003326287.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
gi|269305179|gb|ACZ30729.1| NusB antitermination factor [Xylanimonas cellulosilytica DSM 15894]
Length = 138
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A L++ + ++ + V ++ I
Sbjct: 1 MGARTKARKRAADLLFEAEQRRWDAVRLLR-----------DRIETPVSESPVPQYAADI 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ ++ ID L+ + W+ R+ + ++LR G E++ VP V I E V
Sbjct: 50 VEGVVAHRERIDELL-ETYSNGWTIERMPAVDRALLRIGAWEILFNDDVPDAVAIDEAVD 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A D P F+N +L ++
Sbjct: 109 LAAQLSTDDSPSFVNGLLGRIV 130
>gi|331082309|ref|ZP_08331435.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400795|gb|EGG80396.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 135
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+ + E + S + +
Sbjct: 3 RREMREHIFKLLFLGEFNET---------EEMPEQIQLYFEGLSDLQPTEQAYMENKYTL 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + + ID+L++ + W R+ + +ILR V E+ VPV+V I+E V I+
Sbjct: 54 VKEHLEEIDVLLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
F D F+N +L K++R++
Sbjct: 113 SFGGDDSASFVNGILGKIARED 134
>gi|163790200|ref|ZP_02184633.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
gi|159874475|gb|EDP68546.1| transcription antitermination protein NusB [Carnobacterium sp. AT7]
Length = 147
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A+Q+L+Q+ + E + ++ +L E + V + +
Sbjct: 1 MSLTRRDIREKALQSLFQLSVNE---DLSKEEAMQHALISENDLIDEVETVLV-PSYLDM 56
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GVM+++ ID I E WS +RL I+R + E++ VP V ++E +
Sbjct: 57 LVSGVMEKQDEIDEKI-KTHLENWSLNRLAKTDLIIIRVAIFEMMYVSDVPDRVALNEAL 115
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I + KF+N VL + + +
Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNENSENEA 146
>gi|224417753|ref|ZP_03655759.1| transcription antitermination protein NusB [Helicobacter canadensis
MIT 98-5491]
gi|253827096|ref|ZP_04869981.1| transcription antitermination protein NusB [Helicobacter canadensis
MIT 98-5491]
gi|313141294|ref|ZP_07803487.1| transcription antitermination factor NusB [Helicobacter canadensis
MIT 98-5491]
gi|253510502|gb|EES89161.1| transcription antitermination protein NusB [Helicobacter canadensis
MIT 98-5491]
gi|313130325|gb|EFR47942.1| transcription antitermination factor NusB [Helicobacter canadensis
MIT 98-5491]
Length = 184
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R VQ LY S + I ++ F E + ++ ++
Sbjct: 1 MATRSHVREVVVQLLYAY----GSGNDAIFKFADEIFG-------EHKIKNKQKDFANLL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++ + +DL I + E W F+++ + +ILR GV E+ ++ + I+E +
Sbjct: 50 FNGVIENLESLDLRI-AHQLESWDFTKIGDMEKAILRLGVYEIAFN-NLDKAIAINEALE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
+A F KFIN VLD +++ +I
Sbjct: 108 LAKTFGNEASAKFINGVLDNIAKNLQI 134
>gi|332981565|ref|YP_004463006.1| sun protein [Mahella australiensis 50-1 BON]
gi|332699243|gb|AEE96184.1| sun protein [Mahella australiensis 50-1 BON]
Length = 447
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 15/141 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA++ L IDI Y ++ +D + +++GV
Sbjct: 4 KARNAALKLLRDIDIKK-----------AYINLEIKPALKDNSLSTLDRAFITDMVYGVT 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D LI + + +ILR G+ +++ VP V +A +
Sbjct: 53 RYRLTLDWLIKRYSRGG----KASPWIRNILRMGMYQILYMDRVPDFAACDSSVELAKKY 108
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
E ++NAVL ++ ++++
Sbjct: 109 AGQREAGYVNAVLRRLIQEKD 129
>gi|322436555|ref|YP_004218767.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
gi|321164282|gb|ADW69987.1| NusB antitermination factor [Acidobacterium sp. MP5ACTX9]
Length = 140
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 11/151 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R +Q L+Q D+ + ++ + + D E F
Sbjct: 1 MGTRRKSRELTMQMLFQGDLGKQTPEQVTKLFWSSVTDVDEETRG-----------FAED 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++ + + + ++ W R+ ++ ++LR+ + E++ P ++I+E +
Sbjct: 50 LYRIATSRGTEIDALIEEHSQNWRLERMPVVDRNLLRSAIAEMLGFPKTPHAIVINESLE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+A + + F+N VLD V+R R G
Sbjct: 110 VARRYAAPESIHFLNGVLDAVARDLLKARLG 140
>gi|119390836|sp|Q1J532|NUSB_STRPF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 150
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143
>gi|327439755|dbj|BAK16120.1| transcription termination factor [Solibacillus silvestris StLB046]
Length = 128
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+Q+D + E I + ++
Sbjct: 2 KRTEARQKALQALFQLDSTELTIEEAIGHVLEE--------------EQKSNAFLEQLVR 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + ID + L EKW+ +RL I +ILR V EL+ P +VI++E + ++
Sbjct: 48 GTTENIEAIDAALEKNL-EKWTINRLPKIERTILRLAVYELLYAEETPNKVIMNEAIELS 106
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
F KF+N VL K + +
Sbjct: 107 KTFGDEKSSKFVNGVLSKFTEQ 128
>gi|30021953|ref|NP_833584.1| sun protein [Bacillus cereus ATCC 14579]
gi|29897509|gb|AAP10785.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus cereus ATCC 14579]
Length = 444
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSAIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|71904194|ref|YP_280997.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS6180]
gi|94989179|ref|YP_597280.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS9429]
gi|94993067|ref|YP_601166.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS2096]
gi|71803289|gb|AAX72642.1| N utilization substance protein B [Streptococcus pyogenes MGAS6180]
gi|94542687|gb|ABF32736.1| N utilization substance protein B [Streptococcus pyogenes MGAS9429]
gi|94546575|gb|ABF36622.1| N utilization substance protein B [Streptococcus pyogenes MGAS2096]
Length = 156
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 13 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149
>gi|163793217|ref|ZP_02187193.1| NusB antitermination factor [alpha proteobacterium BAL199]
gi|159181863|gb|EDP66375.1| NusB antitermination factor [alpha proteobacterium BAL199]
Length = 139
Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+++ G S E++ E+ RF E D ++F ++ GV +D +++
Sbjct: 1 MEVSGKSGHEVVPEFVGRRFAGLIEGG---DMAPADPKFFERLVLGVAGEMPTLDGMLAD 57
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
CL + RL+++L +I R G EL+ VPV V+ISEYV + H FF G EP +N V
Sbjct: 58 CLQPEGHLERLEVVLRAIFRLGTYELLSVDDVPVRVVISEYVDLTHAFFAGREPGLVNGV 117
Query: 150 LDKVSRKEEIKR 161
LDK++R
Sbjct: 118 LDKIARVVREDE 129
>gi|87161392|ref|YP_494169.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|161509753|ref|YP_001575412.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|294848555|ref|ZP_06789301.1| transcription antitermination factor NusB [Staphylococcus aureus
A9754]
gi|119390827|sp|Q2FGK9|NUSB_STAA3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|189035911|sp|A8Z464|NUSB_STAAT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|87127366|gb|ABD21880.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|160368562|gb|ABX29533.1| N utilization substance B [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294824581|gb|EFG41004.1| transcription antitermination factor NusB [Staphylococcus aureus
A9754]
gi|315198781|gb|EFU29109.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS01]
gi|320144127|gb|EFW35896.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MRSA177]
Length = 129
Score = 90.6 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFIKDDNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKGHEPVLDETISPYLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D KFIN VL + +
Sbjct: 109 KQFSDDDHYKFINGVLSNIKK 129
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|253314894|ref|ZP_04838107.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
Length = 129
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + + +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFINDDNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHEPVLDETISPYLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D KFIN VL + +
Sbjct: 109 KQFSDDDHYKFINGVLSNIKK 129
>gi|282882096|ref|ZP_06290737.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
315-B]
gi|300814940|ref|ZP_07095168.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|281298126|gb|EFA90581.1| transcription antitermination factor NusB [Peptoniphilus lacrimalis
315-B]
gi|300510910|gb|EFK38182.1| transcription antitermination factor NusB [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 139
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ A+Q LY +++ + E I ++ + + + +I
Sbjct: 3 RKNARVGAMQLLYSMELNKDFSQENIEKFFENY-----------DFSESEQSYINSVISE 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ +D ++S L + W+ RL + ILR + E + +PVEV I+E V IA
Sbjct: 52 LVNNLDSVDKVLSDNL-QGWTIPRLATVDREILRVAIFEFLYRKDIPVEVSINEAVEIAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
+ + PKF+N +L + + + +
Sbjct: 111 KYSSEESPKFVNGILASILKNLKDE 135
>gi|78776604|ref|YP_392919.1| transcription antitermination protein NusB [Sulfurimonas
denitrificans DSM 1251]
gi|119390845|sp|Q30TJ7|NUSB_SULDN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78497144|gb|ABB43684.1| NusB antitermination factor [Sulfurimonas denitrificans DSM 1251]
Length = 132
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+A V LY D+ + E E+ E + ++ +
Sbjct: 1 MATRHQARMAVVSLLYAFDLGNGNIAE-----------HTDEILEEKKIRNKQKDFALTL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GVM +D I L + W F RL I + LR E++ + V+I+E V
Sbjct: 50 YEGVMANITPVDEAIVKHLKD-WDFERLGAIERATLRLATYEILFGE-LDSAVVINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
I F PKFIN VLD +S+ +
Sbjct: 108 ITKAFGTEQSPKFINGVLDAISKDK 132
>gi|226356156|ref|YP_002785896.1| N utilization substance protein B (Protein nusB)(NusB
antitermination factor) [Deinococcus deserti VCD115]
gi|259514814|sp|C1CVC5|NUSB_DEIDV RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226318146|gb|ACO46142.1| putative N utilization substance protein B (Protein nusB)(NusB
antitermination factor) [Deinococcus deserti VCD115]
Length = 168
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 61/170 (35%), Gaps = 8/170 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +K ++ R AR + L++ D + T A E D
Sbjct: 1 MTR-RREKAVQPVGTRRAAREFVFRVLFEADRGDLPLDTVF----TRAEGAMREGDDTFP 55
Query: 61 YLHVD-LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
L D L + ++ G+ + ID + + WSF ++ ++LR ELI
Sbjct: 56 QLSADALTFANELVRGLEKHRADIDTTLRRTI-RGWSFDQMAQTDLNVLRLATFELIYTA 114
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V I V IA F D +F+N VL +SR +
Sbjct: 115 EPHPPV-IESAVRIARKFGGDDSGRFVNGVLAGLSRSLQSAGVAKADEQA 163
>gi|310829051|ref|YP_003961408.1| antitermination protein NusB [Eubacterium limosum KIST612]
gi|308740785|gb|ADO38445.1| antitermination protein NusB [Eubacterium limosum KIST612]
Length = 152
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A++ ++QID + F + D E + +
Sbjct: 1 MSRKMNRKEERELALRGIFQIDFHAEDAE--LDTSLKNFFELAGQGDPEDEVSGMTGGYA 58
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ +I+ ++ + ID LI+S L E W FSR+ + +ILR GV EL+ VP EV I+E
Sbjct: 59 KKVINAALENQGAIDALIASHLKETWDFSRVPKMEKAILRLGVTELLYTK-VPKEVAINE 117
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
V +A + + +IN +L++V+
Sbjct: 118 AVELAKKYASEESKTYINGILNRVA 142
>gi|326790845|ref|YP_004308666.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
gi|326541609|gb|ADZ83468.1| NusB antitermination factor [Clostridium lentocellum DSM 5427]
Length = 139
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR +Q LY+ E I + E +++ G
Sbjct: 3 RRNARELIMQMLYEGTFHPEEERERI-----LYDQLNAMDSKEKSANKAIVKFIEDTYFG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + + ID LI + + WS +R+ + SILR + EL VPV+V ++E V IA
Sbjct: 58 VYEHVKEIDALI-AGAAKNWSMARIAKVDLSILRLAIFELQYTD-VPVKVAVNEAVEIAK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
+ PKFIN VL V++ E
Sbjct: 116 IYSTDKSPKFINGVLGSVTQANEA 139
>gi|206971310|ref|ZP_03232261.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218233863|ref|YP_002368666.1| sun protein [Bacillus cereus B4264]
gi|296504360|ref|YP_003666060.1| sun protein [Bacillus thuringiensis BMB171]
gi|206734082|gb|EDZ51253.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1134]
gi|218161820|gb|ACK61812.1| sun protein [Bacillus cereus B4264]
gi|296325412|gb|ADH08340.1| sun protein [Bacillus thuringiensis BMB171]
Length = 444
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSAIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|259046624|ref|ZP_05737025.1| N utilization substance protein B [Granulicatella adiacens ATCC
49175]
gi|259036789|gb|EEW38044.1| N utilization substance protein B [Granulicatella adiacens ATCC
49175]
Length = 153
Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTELDVESV 60
++K LK R R+ A+QALYQ+D+ + + + E + +D + + +
Sbjct: 2 SRKPLK----RRALRVLAIQALYQLDMTPEMHIVDALSLALECSEDSPYSSDAITEEDLI 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH- 119
++ + ++ GV + + ID LI +++W +R+ + I+R + E+
Sbjct: 58 NEVPEIAYSIALVRGVQNNLEKIDGLIEKH-SKRWKLNRIVRLDLIIMRVAIFEMTSPEL 116
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP V ++E + IA + KFIN +L
Sbjct: 117 EVPQTVALNEAIEIAKTYSDEKSAKFINGILSNFV 151
>gi|315646179|ref|ZP_07899299.1| sun protein [Paenibacillus vortex V453]
gi|315278378|gb|EFU41694.1| sun protein [Paenibacillus vortex V453]
Length = 460
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ N K R + R A+ L Q++ G Y ++
Sbjct: 1 MSGNRNPKG------RQESPRELAMNVLTQVEQEG-----------AYSNLLLNSALQKA 43
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D +I+G + R +D + + + ++L + ++LR + +++
Sbjct: 44 SLSKSDAGLATELIYGTISRLNTLDYFLDRYVNKG--VAKLQPWVRALLRMSLYQVVYLD 101
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P ++SE V +A + +N VL + R++
Sbjct: 102 RIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQK 139
>gi|49483774|ref|YP_040998.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus MRSA252]
gi|282904107|ref|ZP_06311995.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C160]
gi|282905934|ref|ZP_06313789.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908844|ref|ZP_06316662.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|283958289|ref|ZP_06375740.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|295428103|ref|ZP_06820735.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297590931|ref|ZP_06949569.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MN8]
gi|56749229|sp|Q6GGH4|NUSB_STAAR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|49241903|emb|CAG40597.1| putative N utilization substance protein B [Staphylococcus aureus
subsp. aureus MRSA252]
gi|282327108|gb|EFB57403.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331226|gb|EFB60740.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595725|gb|EFC00689.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus C160]
gi|283790438|gb|EFC29255.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus A017934/97]
gi|295128461|gb|EFG58095.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297575817|gb|EFH94533.1| transcription antitermination factor NusB [Staphylococcus aureus
subsp. aureus MN8]
gi|315195426|gb|EFU25813.1| transcription antitermination protein NusB [Staphylococcus aureus
subsp. aureus CGS00]
Length = 129
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ T + ++ +D E+ ++
Sbjct: 2 SRKESRVQAFQTLFQLEMKDSDLT-----------INEAISFIKDDNPDLDFEFIHWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D IS L + W+ +RL ILR E++ P +V+++E V +
Sbjct: 51 GVKDHEPVLDETISPNLKD-WTIARLLKTDRIILRMATYEILHSD-TPAKVVMNEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F D KFIN VL + +
Sbjct: 109 KQFSDDDHYKFINGVLSNIKK 129
>gi|149194728|ref|ZP_01871823.1| N utilization substance protein B [Caminibacter mediatlanticus
TB-2]
gi|149135151|gb|EDM23632.1| N utilization substance protein B [Caminibacter mediatlanticus
TB-2]
Length = 136
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A +Q LY ++ EL E E+ + +++GV
Sbjct: 5 THAREAVIQTLYAKELGNDDA-----------INQFDELLKERKIKGQKAEFAKKLLNGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ID +I WSF RLD + ILR G+ E+ P +++I E V IA +
Sbjct: 54 LEHINEIDEII-KNHLIDWSFDRLDKVDKQILRTGIYEIKYTD-TPYQIVIDEAVKIAKN 111
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
F FIN +LDKV+++ +
Sbjct: 112 FSEDKSKNFINGILDKVAKEVRENK 136
>gi|312869983|ref|ZP_07730122.1| transcription antitermination factor NusB [Lactobacillus oris
PB013-T2-3]
gi|311094568|gb|EFQ52873.1| transcription antitermination factor NusB [Lactobacillus oris
PB013-T2-3]
Length = 136
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 12/148 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A Q L+ + A + E+ +
Sbjct: 1 MSLTRHALREEAFQVLFALQTNPD------------ADLATIYQSIPHHDERAIPEYVQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV DR+ +D ISS L W+ RL ILR + EL VP V I+E +
Sbjct: 49 LATGVSDRQAALDGQISSLLASDWTIDRLAKADLIILRLALYELQYVEEVPTPVAINEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+A +F KFIN L + ++ +
Sbjct: 109 ELAKEFSNDQSRKFINGALGRFEKENNL 136
>gi|52141623|ref|YP_085206.1| sun protein [Bacillus cereus E33L]
gi|51975092|gb|AAU16642.1| sun protein [Bacillus cereus E33L]
Length = 444
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|301300970|ref|ZP_07207135.1| transcription antitermination factor NusB [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851437|gb|EFK79156.1| transcription antitermination factor NusB [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 131
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A Q L+ + + +E I ++ DL +
Sbjct: 1 MSLSRHDIRKIAFQTLFALGSNPDANSEDIYREL-----------LDEDNNDSDLSYLNE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV+D + ID+ I+ L + W+ RL+ ILR + E+ ++ ++E V
Sbjct: 50 LVDGVLDHQSEIDMEITKYLRKNWNIGRLNKTDLIILRIAIFEIKYSDVAS-KIAVNEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A +F KF+NA+L +
Sbjct: 109 ELAKEFSDDKSYKFVNAILQNLI 131
>gi|19552830|ref|NP_600832.1| transcription antitermination protein NusB [Corynebacterium
glutamicum ATCC 13032]
gi|62390501|ref|YP_225903.1| transcription antitermination protein NusB [Corynebacterium
glutamicum ATCC 13032]
gi|24638069|sp|Q8NQ33|NUSB_CORGL RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21324387|dbj|BAB99011.1| Transcription termination factor [Corynebacterium glutamicum ATCC
13032]
gi|41325838|emb|CAF21627.1| Transcription termination factor [Corynebacterium glutamicum ATCC
13032]
Length = 227
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + ++D K R AR+ AV L++ + II + + +
Sbjct: 1 MSERRQDYKRHGSRYKARMRAVDILFEAESRDVDPVAIIDDRHKLARDT-------NPIV 53
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
E+ II+GV +D+ ++ + E W+ RL + +ILR E+I VP
Sbjct: 54 APVAEYTETIINGVAVELDTLDVFLAEHIAETWTLGRLPSVDRAILRVASWEMIYNADVP 113
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI--KRSGCVSAI 168
V I E V IA ++ +INA LD ++ K E +R+ A+
Sbjct: 114 VTTAIVEAVEIASEYSGDKSSAYINATLDAMASKVETLRERAANPEAV 161
>gi|47569491|ref|ZP_00240171.1| sun protein [Bacillus cereus G9241]
gi|47553820|gb|EAL12191.1| sun protein [Bacillus cereus G9241]
Length = 444
Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|160938277|ref|ZP_02085632.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
BAA-613]
gi|158438650|gb|EDP16407.1| hypothetical protein CLOBOL_03173 [Clostridium bolteae ATCC
BAA-613]
Length = 272
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 11/148 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---------VYLHVDL 66
R R + L+ D + E I++ Y + + ES D
Sbjct: 52 RRELREHCFKMLFSADFYP-TQEEAIAQLGQYFQSPEEDDVDESGILQVLHKVELKEADS 110
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
E+ + +M++ ID ++ W R+ + +ILR + E++ ++P +V
Sbjct: 111 EYLQARTANIMEKIPEIDEKLNQA-AAGWKTKRMGKVELTILRLALYEMLHDDAIPEKVS 169
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E V +A F D P F+N +L K
Sbjct: 170 INEAVELAKKFGGNDSPSFVNGILAKFV 197
>gi|326941634|gb|AEA17530.1| sun protein [Bacillus thuringiensis serovar chinensis CT-43]
Length = 444
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSAIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|56964231|ref|YP_175962.1| transcription antitermination protein NusB [Bacillus clausii
KSM-K16]
gi|81600830|sp|Q5WF59|NUSB_BACSK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|56910474|dbj|BAD65001.1| N utilization substance protein NusB [Bacillus clausii KSM-K16]
Length = 133
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +ARL AVQ LYQ+ +I + + I E++ ++H
Sbjct: 2 NRRVARLRAVQTLYQLTLIDINVDKAIENTLN--------------DEEEPSEFYNTLVH 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID +S L ++ RL + +I R G+ E++ +PV V ++E + +A
Sbjct: 48 GTLEHQDEIDGYLSENLKG-YTLDRLGHVDRAIARMGLFEMLYLDDIPVNVTLNEAIELA 106
Query: 135 HDFFYGDEPKFINAVLDK 152
F D +FIN VL
Sbjct: 107 KAFGGTDAGRFINGVLSN 124
>gi|157692254|ref|YP_001486716.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
gi|157681012|gb|ABV62156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pumilus
SAFR-032]
Length = 447
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A+ AL +++ Y + + D +++
Sbjct: 2 KKSNVREVALDALIKLEQNQ-----------AYSNLLLQSVMKDKDLADQDKPLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D +++ + ++ + +LR + +++ +P I E V +
Sbjct: 51 GTLQNKLALDYMLAPFVK---KPQKVAPWVMQLLRMSLYQMVYLEKIPDRAAIHEAVELT 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ +N VL V R+
Sbjct: 108 KKRGHKGISSLVNGVLRSVQRE 129
>gi|306826738|ref|ZP_07460040.1| transcription antitermination factor NusB [Streptococcus pyogenes
ATCC 10782]
gi|68052494|sp|Q5XA94|NUSB_STRP6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|304431027|gb|EFM34034.1| transcription antitermination factor NusB [Streptococcus pyogenes
ATCC 10782]
Length = 150
Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I+ G + + D ++ L + + ++
Sbjct: 7 NSRRDLRERAFQALFNIE-TGAELLAA----SQFAYGYDKVTGEDAQVLEL-PIFLLSLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 61 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 121 AKKYSDETSAKFINGLLSQYVSE 143
>gi|284032250|ref|YP_003382181.1| NusB antitermination factor [Kribbella flavida DSM 17836]
gi|283811543|gb|ADB33382.1| NusB antitermination factor [Kribbella flavida DSM 17836]
Length = 136
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ LY+ ++ G +++ E+ +
Sbjct: 1 MSARSKARKRALDVLYESEVRGLPVGGTLADRVA-------------DNDPPVNEFTVAL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID L+ S + W+ R+ + ++LR GV EL+ VP V +SE V
Sbjct: 48 VEGVAEHIAAIDDLL-STHSVGWTLDRMPAVDRNVLRIGVYELLFDEQVPDVVAVSEAVA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A D + P F+N +L ++ +
Sbjct: 107 LARDLSTDESPAFVNGLLARLLQ 129
>gi|315652076|ref|ZP_07905077.1| transcription antitermination factor NusB [Eubacterium saburreum
DSM 3986]
gi|315485723|gb|EFU76104.1| transcription antitermination factor NusB [Eubacterium saburreum
DSM 3986]
Length = 150
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEII--SEYETYRFCADTELDV-ESVYLHVDLEWFRVI 72
R + R + L+ +D EI + +E+ + ++ + ++ Y D+E+ R
Sbjct: 7 RHLLREHCFKILFSLDFYPEEEAEIQTDNYFESPSLEDEDDVLIHDANYGDGDIEYIRSK 66
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
V D + ID +I+ ++ W R+ + SILR + E+ +PV V I+E V
Sbjct: 67 AMLVRDNQAEIDKMITEL-SQGWKLERIGRVEKSILRLAIAEMKYDSDIPVSVAINEAVE 125
Query: 133 IAHDFFYGDEPKFINAVLDK 152
+A + + F+NA+L K
Sbjct: 126 LAKAYGRDESYSFVNAILSK 145
>gi|296269370|ref|YP_003652002.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
gi|296092157|gb|ADG88109.1| NusB antitermination factor [Thermobispora bispora DSM 43833]
Length = 144
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R AR A+ L++ + S +++ E LE+
Sbjct: 7 KGRQERTQARQRALDILFEAEARAVSPLQVLDERAKEA-------------DPPVLEYTV 53
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV+ + ID LI S + W+ R+ + +ILRAG E++ VP V+ISE+
Sbjct: 54 TLVEGVVRHQDRIDELI-STYAQGWTLDRMPAVDRNILRAGTYEMLWSTDVPENVVISEW 112
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
V +A + + P F+N +L +R +E+K S
Sbjct: 113 VRLAAELSTDESPHFVNGLL---ARFKELKPS 141
>gi|116492583|ref|YP_804318.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
gi|122265953|sp|Q03FZ6|NUSB_PEDPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116102733|gb|ABJ67876.1| NusB antitermination factor [Pediococcus pentosaceus ATCC 25745]
Length = 133
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R +A + ++ ++ E ++ +
Sbjct: 1 MSLNRHQIRESAFKIIFAKSANPD----------ADLSELQDQVLEEFHETEAPDQFLKD 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + I+ IS L + W+ RL+ IL+ G E+ P +V I+E +
Sbjct: 51 LVMGVSLNLEAINETISGELKKGWTVKRLESPDRVILQMGTYEIKYTE-TPDKVAINEAL 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+A + D KFIN VL +++
Sbjct: 110 ELAKKYTDEDARKFINGVLSNIAK 133
>gi|222099929|ref|YP_002534497.1| N utilization substance protein B like protein [Thermotoga
neapolitana DSM 4359]
gi|221572319|gb|ACM23131.1| N utilization substance protein B like protein [Thermotoga
neapolitana DSM 4359]
Length = 135
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLA +AL+Q + E +++ Y + R I + +
Sbjct: 2 RLAVFKALFQHEFRK-----------DEDLEQILEEILDNSYDEKAKKDARRYIRNIKEH 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
Q ID LIS L E+W+ RL + +ILR G EL+ +P+EV I+E + IA +
Sbjct: 51 LQTIDDLISRYL-ERWTIDRLSAVDRNILRLGTYELLYEKDIPIEVTINEAIEIAKRYGT 109
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+ KF+N +LD+++++ K
Sbjct: 110 ENSGKFVNGILDRIAKENAPKE 131
>gi|328947375|ref|YP_004364712.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
gi|328447699|gb|AEB13415.1| NusB antitermination factor [Treponema succinifaciens DSM 2489]
Length = 161
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADT---------------ELDVES 59
R R+ AVQALY D+ S +++ + E + S
Sbjct: 2 SRRNGRIFAVQALYSYDVGKASLEDLLKLEWLKEDSENNPSGKFVLPETVTETSETEDFS 61
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
++ R++I G ++ Q ID I + LT W+F RL+ + SILR V L+
Sbjct: 62 QSRAESYDFARLLISGTINHIQEIDEKIKAHLTANWNFDRLNRVTLSILRISVFALLYQK 121
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ +II E + I+ +F D +FINA+LD +S++E
Sbjct: 122 ELKPTIIIDEAIAISKEFGTDDSFRFINAILDTISKEE 159
>gi|78186474|ref|YP_374517.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
gi|78166376|gb|ABB23474.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium luteolum DSM
273]
Length = 442
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A L Q++ + EL S D + GV
Sbjct: 2 TSARELAFNILQQLEAG-----------TRHSDSLLHELLEASSLKGPDRALATALTSGV 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ +D +I+ + + + +ILR GV +L+ VP ++E V +A
Sbjct: 51 LRQRLQLDFIIAKFYS--HDIQKASPAVLNILRLGVWQLLFLDRVPRWAAVNECVRLARR 108
Query: 137 FFYGDEPKFINAVLDKVS 154
+ K NAVL K+S
Sbjct: 109 YKGERMSKLTNAVLRKIS 126
>gi|319442128|ref|ZP_07991284.1| transcription antitermination protein NusB [Corynebacterium
variabile DSM 44702]
Length = 190
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 8/137 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V L++ + EI+ + E+ + ++ I+ GV + I
Sbjct: 21 VDMLFEAEFRDIDPVEIVEDRRELS-------RDEANQVAPVNDYTAQIVGGVAENLDGI 73
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142
D I+ L+ +W+ RL + ++LR EL+ +P +V + E + +A ++ +
Sbjct: 74 DGAIAGHLSSEWTLDRLPAVDRAVLRVSAWELLHNHDEIPEKVAVDEGIGLAKEYGHDKA 133
Query: 143 PKFINAVLDKVSRKEEI 159
P +++AVLD +SR I
Sbjct: 134 PGYVHAVLDGISRSRRI 150
>gi|158320464|ref|YP_001512971.1| sun protein [Alkaliphilus oremlandii OhILAs]
gi|158140663|gb|ABW18975.1| sun protein [Alkaliphilus oremlandii OhILAs]
Length = 445
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ LY+I++ E + A + Y +D +++GV++
Sbjct: 4 REGALKVLYEINVN-----------EAFSNIALNKELNNESYNLLDRNLLTELVYGVLEN 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +ID ++S + +++ ++LR G+ +L+ VP ++E V ++ +
Sbjct: 53 QIYIDHVLSQFSNFQ--LDKMNPYTLNLLRLGIYQLLFLDRVPSFAAVNETVNLSKKYC- 109
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
FIN VL V R +
Sbjct: 110 KKTTGFINGVLRNVQRNRNNIKMPKPEK 137
>gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
gi|224954565|gb|EEG35774.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
Length = 466
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 14/157 (8%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T Q +K++++ +R R A+ L +I + L
Sbjct: 6 TKQTRRKEMQM-EKRTDMRAEALDTL----------IDIERNKKLSHIAIGETLMRNQFE 54
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D ++ + GV +RK ++D ++ + ++ S+LR G +++
Sbjct: 55 KKADRAFYTRLCEGVTERKIYLDYILDHYSKT--PMKKCKPLIRSLLRMGAYQILFMDVR 112
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
SE V +A +G F+N VL + R++E
Sbjct: 113 DAAAC-SEAVSLAKKRGFGRLSGFVNGVLRTLVREKE 148
>gi|213691632|ref|YP_002322218.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|254772616|sp|B7GPW0|NUSB_BIFLI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|213523093|gb|ACJ51840.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 15697]
gi|320457719|dbj|BAJ68340.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. infantis ATCC 15697]
Length = 187
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D ++ E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKNQDILSLLDERIAH-----------PGAQTPLPDYAIEIVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A
Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
D P FI+ +L V ++ + +
Sbjct: 111 TLCDDDSPAFIHGLLSAVC----TAKNAAPAPES 140
>gi|23336051|ref|ZP_00121280.1| COG0781: Transcription termination factor [Bifidobacterium longum
DJO10A]
gi|23464693|ref|NP_695296.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
gi|189438946|ref|YP_001954027.1| transcription termination factor [Bifidobacterium longum DJO10A]
gi|227546799|ref|ZP_03976848.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239620779|ref|ZP_04663810.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|312132387|ref|YP_003999726.1| nusb [Bifidobacterium longum subsp. longum BBMN68]
gi|322691569|ref|YP_004221139.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. longum JCM 1217]
gi|32171480|sp|Q8G817|NUSB_BIFLO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238692035|sp|B3DQ30|NUSB_BIFLD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|23325257|gb|AAN23932.1| NusB antitermination protein [Bifidobacterium longum NCC2705]
gi|189427381|gb|ACD97529.1| Transcription termination factor [Bifidobacterium longum DJO10A]
gi|227212761|gb|EEI80642.1| NusB antitermination factor [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239516355|gb|EEQ56222.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|291516175|emb|CBK69791.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. longum F8]
gi|311772581|gb|ADQ02069.1| NusB [Bifidobacterium longum subsp. longum BBMN68]
gi|320456425|dbj|BAJ67047.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. longum JCM 1217]
Length = 190
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D ++ E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAH-----------PGAQTPLPDYAIEIVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A
Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFTDDVPDKVAIDEALALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
D P FI+ +L V ++ + +
Sbjct: 111 TLCDDDSPAFIHGLLSAVC----TAKNAAPAPES 140
>gi|114800202|ref|YP_760752.1| transcription antitermination factor NusB [Hyphomonas neptunium
ATCC 15444]
gi|119390777|sp|Q0C0J1|NUSB_HYPNA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|114740376|gb|ABI78501.1| transcription antitermination factor NusB [Hyphomonas neptunium
ATCC 15444]
Length = 154
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
VQALY+++ S I E+ R + D + F+ I++ V++ + I
Sbjct: 22 VQALYEMEQTEKSARATIREFMEDRLGLGPDGTP---VEDADPDLFKSIVNSVVEHQAKI 78
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I + L E W +RLD + ++LRAG E I + +I+SEYV +AHDFF +
Sbjct: 79 DTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDA 138
Query: 144 KFINAVLDKVSRKEEI 159
KF NAVL + R
Sbjct: 139 KFANAVLQNMGRDLRA 154
>gi|87200933|ref|YP_498190.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
12444]
gi|119390792|sp|Q2G467|NUSB_NOVAD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|87136614|gb|ABD27356.1| NusB antitermination factor [Novosphingobium aromaticivorans DSM
12444]
Length = 148
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQ D+ ++ E+ +R A+ E + Y D+ +F ++ GV R+ ID L+
Sbjct: 21 YQADMEQTPLHLLLDEFHQHRLGAEIE---DVEYAKADVAFFDDVVKGVDARRDEIDGLL 77
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
S+ L + W+ RLD + ILRAG EL+ V V +I+EYV +AH FF E KF+N
Sbjct: 78 SARLAKGWALPRLDRTMLQILRAGAYELMARRDVNVGTVITEYVDVAHAFFEEREAKFVN 137
Query: 148 AVLDKVSRKEE 158
+LD V++
Sbjct: 138 GLLDAVAKDVR 148
>gi|302392192|ref|YP_003828012.1| sun protein [Acetohalobium arabaticum DSM 5501]
gi|302204269|gb|ADL12947.1| sun protein [Acetohalobium arabaticum DSM 5501]
Length = 448
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 13/142 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+A+Y+++ G Y L + D +I+G +
Sbjct: 6 RQTAVEAVYRVNEEG-----------AYSNLILNHLFKKYNLADQDRGLATELIYGSLRM 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ H+D +++ +++D +ILR G+ ++ S+P V +E V +A D+ +
Sbjct: 55 RNHLDWILNQFADR--RVNKMDKWTRNILRLGLYQIRFLDSIPDAVACNETVELAKDYQH 112
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+N +L + R +
Sbjct: 113 SGAAGFVNGILRSILRSLDEIE 134
>gi|311064653|ref|YP_003971378.1| n utilization substance protein B NusB [Bifidobacterium bifidum
PRL2010]
gi|310866972|gb|ADP36341.1| NusB N utilization substance protein B [Bifidobacterium bifidum
PRL2010]
Length = 223
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E E ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQD-----------FLSLLAERIEEPGAQTPLPDYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A
Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
GD P FI+ +L + E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137
>gi|154248795|ref|YP_001409620.1| transcription antitermination protein NusB [Fervidobacterium
nodosum Rt17-B1]
gi|171769316|sp|A7HJ80|NUSB_FERNB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|154152731|gb|ABS59963.1| NusB antitermination factor [Fervidobacterium nodosum Rt17-B1]
Length = 141
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R V+ +Q + EI SE + D F+
Sbjct: 1 MVSKRRVLREMVVKLFFQREFRHNEFEEIFSETLNKIRDNTIKAD------------FKR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV ID +IS+ L WSF RL + ++LR G ELI ++P+EV I+E +
Sbjct: 49 YVEGVFHNLSTIDNIISNHL-INWSFDRLSYLERNVLRVGTYELIYEENIPIEVTINEMI 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
IA + + KF+N +LD+++++ K
Sbjct: 108 EIAKKYGSEESGKFVNGILDRIAKEHAPKE 137
>gi|218899018|ref|YP_002447429.1| sun protein [Bacillus cereus G9842]
gi|218546015|gb|ACK98409.1| sun protein [Bacillus cereus G9842]
Length = 444
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSAIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|258545998|ref|ZP_05706232.1| N utilization substance protein B family protein (protein NusB)
[Cardiobacterium hominis ATCC 15826]
gi|258518766|gb|EEV87625.1| N utilization substance protein B family protein (protein NusB)
[Cardiobacterium hominis ATCC 15826]
Length = 144
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 13/147 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R AR +QALYQ + G + V+ +D ++F
Sbjct: 10 EQRSRARRQLLQALYQWQMSGDDPWSVRRNRL-----------VDPKTGDIDDDYFNAAF 58
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+ +++ D ++ + S LD + +IL G+ ELIE + V I+E V +
Sbjct: 59 DTISEKRDLYDTRVAEHTHRRPS--TLDPVERAILWIGMYELIERFDIHPTVTINEAVEL 116
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
A F D K+INA LD + +
Sbjct: 117 AKQFGAADSYKYINATLDHLGKTLRPN 143
>gi|160893229|ref|ZP_02074017.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
gi|156865312|gb|EDO58743.1| hypothetical protein CLOL250_00775 [Clostridium sp. L2-50]
Length = 144
Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 4/142 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEY---ETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + L+ ++ S +E + D + +
Sbjct: 3 RREIRETVFKILFSLEFNDVSEIREEAELELEHASLYDEDDNKMDAVAMTEEEKAYIIDR 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ V+ ID I S +++ W R+ +ILR V E+ +PV+V I+E V
Sbjct: 63 VEAVVSHITEIDETI-SGISQGWKLGRIGKAELAILRLAVYEIKFDEDIPVKVAINEAVE 121
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + + FINA+L K++
Sbjct: 122 LAKTYCDVEAKSFINALLAKLA 143
>gi|289578288|ref|YP_003476915.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
gi|297544568|ref|YP_003676870.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528001|gb|ADD02353.1| NusB antitermination factor [Thermoanaerobacter italicus Ab9]
gi|296842343|gb|ADH60859.1| NusB antitermination factor [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 140
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ DI ++I + + E+ +
Sbjct: 2 NRTEAREWVVKMLYQYDISRFPISKIFDNF------------YKEKDPGDQKEYIENTVK 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID I ++ W+ +R+ I +ILR + E+I ++PV + I+E V IA
Sbjct: 50 GAIEHLEEIDKEIEKY-SQNWALNRMPRIDLAILRCSIYEMIY-GNIPVNISINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ D FIN +L R +
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDK 130
>gi|30263868|ref|NP_846245.1| sun protein [Bacillus anthracis str. Ames]
gi|47529294|ref|YP_020643.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186715|ref|YP_029967.1| sun protein [Bacillus anthracis str. Sterne]
gi|49478421|ref|YP_037926.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118479087|ref|YP_896238.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|165872297|ref|ZP_02216934.1| sun protein [Bacillus anthracis str. A0488]
gi|167636414|ref|ZP_02394713.1| sun protein [Bacillus anthracis str. A0442]
gi|167641141|ref|ZP_02399396.1| sun protein [Bacillus anthracis str. A0193]
gi|170688847|ref|ZP_02880050.1| sun protein [Bacillus anthracis str. A0465]
gi|170708813|ref|ZP_02899249.1| sun protein [Bacillus anthracis str. A0389]
gi|177654922|ref|ZP_02936639.1| sun protein [Bacillus anthracis str. A0174]
gi|190565749|ref|ZP_03018668.1| sun protein [Bacillus anthracis Tsiankovskii-I]
gi|196035830|ref|ZP_03103232.1| sun protein [Bacillus cereus W]
gi|196047441|ref|ZP_03114653.1| sun protein [Bacillus cereus 03BB108]
gi|218904995|ref|YP_002452829.1| sun protein [Bacillus cereus AH820]
gi|227813227|ref|YP_002813236.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229603771|ref|YP_002868102.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|254683426|ref|ZP_05147286.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CNEVA-9066]
gi|254721397|ref|ZP_05183186.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A1055]
gi|254739848|ref|ZP_05197541.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Kruger B]
gi|254751038|ref|ZP_05203077.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Vollum]
gi|254756703|ref|ZP_05208732.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Australia 94]
gi|301055356|ref|YP_003793567.1| sun protein [Bacillus anthracis CI]
gi|30258512|gb|AAP27731.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Ames]
gi|47504442|gb|AAT33118.1| sun protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180642|gb|AAT56018.1| sun protein [Bacillus anthracis str. Sterne]
gi|49329977|gb|AAT60623.1| sun protein [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118418312|gb|ABK86731.1| sun protein [Bacillus thuringiensis str. Al Hakam]
gi|164711973|gb|EDR17513.1| sun protein [Bacillus anthracis str. A0488]
gi|167510921|gb|EDR86312.1| sun protein [Bacillus anthracis str. A0193]
gi|167528156|gb|EDR90943.1| sun protein [Bacillus anthracis str. A0442]
gi|170126298|gb|EDS95189.1| sun protein [Bacillus anthracis str. A0389]
gi|170667202|gb|EDT17962.1| sun protein [Bacillus anthracis str. A0465]
gi|172080433|gb|EDT65520.1| sun protein [Bacillus anthracis str. A0174]
gi|190562668|gb|EDV16634.1| sun protein [Bacillus anthracis Tsiankovskii-I]
gi|195991479|gb|EDX55445.1| sun protein [Bacillus cereus W]
gi|196021749|gb|EDX60444.1| sun protein [Bacillus cereus 03BB108]
gi|218535394|gb|ACK87792.1| sun protein [Bacillus cereus AH820]
gi|227005311|gb|ACP15054.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. CDC 684]
gi|229268179|gb|ACQ49816.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. A0248]
gi|300377525|gb|ADK06429.1| sun protein [Bacillus cereus biovar anthracis str. CI]
Length = 444
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|94991121|ref|YP_599221.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS10270]
gi|94544629|gb|ABF34677.1| N utilization substance protein B [Streptococcus pyogenes
MGAS10270]
Length = 156
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 13 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTREDAQVLEL-PIFLLSLV 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149
>gi|328881116|emb|CCA54355.1| Ribosomal RNA small subunit methyltransferase B [Streptomyces
venezuelae ATCC 10712]
Length = 470
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ Q ++ K R + R+ A +AL +D ++ + +
Sbjct: 1 MSEQARRRPHKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLR-------KAREK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D +IS+C+ +D + +L G +L+
Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIISACVDR--PLREVDPPVLDVLALGAHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL K+S+++ V+
Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQQDLDAWVAQVAPP 160
>gi|254735904|ref|ZP_05193610.1| ribosomal RNA small subunit methyltransferase B [Bacillus anthracis
str. Western North America USA6153]
Length = 444
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|225865846|ref|YP_002751224.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
gi|225787241|gb|ACO27458.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
03BB102]
Length = 444
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|196038686|ref|ZP_03105994.1| sun protein [Bacillus cereus NVH0597-99]
gi|196030409|gb|EDX69008.1| sun protein [Bacillus cereus NVH0597-99]
Length = 444
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|224283414|ref|ZP_03646736.1| NusB antitermination factor [Bifidobacterium bifidum NCIMB 41171]
gi|313140569|ref|ZP_07802762.1| transcription termination factor [Bifidobacterium bifidum NCIMB
41171]
gi|313133079|gb|EFR50696.1| transcription termination factor [Bifidobacterium bifidum NCIMB
41171]
Length = 223
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E E ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQD-----------FLSLLAERIEEPGAQTPLPDYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A
Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
GD P FI+ +L + E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137
>gi|172035456|ref|YP_001801957.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
gi|171696910|gb|ACB49891.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. ATCC
51142]
Length = 452
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++ + ++ AR + L QID T + ++ D
Sbjct: 1 MQPTTKKTNARQLTLDILRQIDRKNSYTDIALDR-----------AFNQTHLNPSDRSLC 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++G++ ++ +D LI + + L IL G+ +L ++P ++
Sbjct: 50 TELVYGIIRHQRTLDTLIDQLGKK--KAKQQPPDLRRILHIGLYQLRYLDNIPPSAAVNT 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V +A ++ +N +L + R E
Sbjct: 108 SVNLAKEYKLNRLSGVVNGILRQYLRSSET 137
>gi|310287767|ref|YP_003939025.1| antitermination factor NusB [Bifidobacterium bifidum S17]
gi|309251703|gb|ADO53451.1| antitermination factor NusB [Bifidobacterium bifidum S17]
Length = 223
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E E ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQD-----------FLSLLAERIEEPGAQTPLPDYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D ++ ID +++ + W R+ ++ +ILR E+I VP V I E + +A
Sbjct: 52 VADHRREIDYMLNEH-STGWKVRRMAVVDRNILRIAAWEIIFNDDVPDRVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
GD P FI+ +L + E + +
Sbjct: 111 TLSDGDSPAFIHGLLSAICDDTEGREA 137
>gi|260438372|ref|ZP_05792188.1| transcription antitermination factor NusB [Butyrivibrio crossotus
DSM 2876]
gi|292808958|gb|EFF68163.1| transcription antitermination factor NusB [Butyrivibrio crossotus
DSM 2876]
Length = 142
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 2/142 (1%)
Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R + L++ + S ++ + + E + E +
Sbjct: 2 NRTALRETVFKVLFRYEFHDSESFAGQMNLFFAEYPESGDEEENWPALDSKSAEEITGKV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
++ ID +IS +E W R+ SI+R V E++ ++ V ISE V +
Sbjct: 62 TDILCHIDEIDKVISEK-SEGWDIDRIGKAELSIMRIAVYEILYDDNIENAVSISEAVKL 120
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + F+N VL K+ +
Sbjct: 121 AKKYGDEKAYGFVNGVLAKIVK 142
>gi|225573684|ref|ZP_03782439.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
10507]
gi|225038977|gb|EEG49223.1| hypothetical protein RUMHYD_01880 [Blautia hydrogenotrophica DSM
10507]
Length = 145
Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+ E + D + +
Sbjct: 13 RSKIREHIFKLLFMSQFN---------TEEEMPQQLTIYFNELEELDESDRAYMQEKYEQ 63
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + ID L++ ++ W SR+ + + LR V EL +P +V I+E V +A
Sbjct: 64 VISHLKEIDELLNQL-SKGWKTSRMARVDLTALRLSVYELKYEEEIPTKVSINEAVELAK 122
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
F D F+N +L +V+++
Sbjct: 123 RFGGEDSFAFVNGILGRVAKELR 145
>gi|303228824|ref|ZP_07315638.1| transcription antitermination factor NusB [Veillonella atypica
ACS-134-V-Col7a]
gi|303232103|ref|ZP_07318806.1| transcription antitermination factor NusB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513209|gb|EFL55248.1| transcription antitermination factor NusB [Veillonella atypica
ACS-049-V-Sch6]
gi|302516536|gb|EFL58464.1| transcription antitermination factor NusB [Veillonella atypica
ACS-134-V-Col7a]
Length = 134
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + S ++I D+ +
Sbjct: 1 MSKKRNRREARQYAFQVLYANEFH-TSNDDVIFPDGEISLSM-------------DIAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
II GV+ + ID ++ T++ F +D + +ILR + EL V ++I+
Sbjct: 47 NQIIDGVLSHLEEIDTILEPYCTKR-KFVLMDKVDRAILRLAIWELNYNSEEVSPSIVIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E V +A F K INA+LD ++ +
Sbjct: 106 EAVQLAKSFGSDASYKLINAILDAYNKSK 134
>gi|158320645|ref|YP_001513152.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
gi|166918801|sp|A8MFJ3|NUSB_ALKOO RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|158140844|gb|ABW19156.1| NusB antitermination factor [Alkaliphilus oremlandii OhILAs]
Length = 138
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 12/143 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR ++ L+++ I + E E+ +++
Sbjct: 2 SRKLARELTMKVLFEMHINN-----------DFNIQRVEHHLFEGSIEEQQKEYIHKVLN 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ + ID +I + W +R+ + +ILR E+I +P V I+E + +A
Sbjct: 51 EAILNLEAIDSIIEEY-STSWKLNRIANVDLAILRLAFSEIIYMKDIPYRVSINEAIELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + P F+N +L K +E
Sbjct: 110 KIYGSDETPNFVNGILGKYVEQE 132
>gi|72161498|ref|YP_289155.1| transcription antitermination protein NusB [Thermobifida fusca YX]
gi|119390842|sp|Q47QY5|NUSB_THEFY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71915230|gb|AAZ55132.1| NusB antitermination factor [Thermobifida fusca YX]
Length = 142
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR+ AV+ LY+ ++ G +E+I E+ +
Sbjct: 9 SRHKARVRAVEILYEAEVRGVPVSEVIERRRA-------------QTEPPINEFTEQLAT 55
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V + + ID L+ W+ R+ ++ +ILR GV EL+ +P V I+E V +A
Sbjct: 56 RVDEHRARIDELL-ETYAIGWTLDRMPVVDRNILRIGVYELLWADDIPDGVAIAEAVAMA 114
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + P F+N +L ++ K+
Sbjct: 115 KELSTDESPVFVNGLLSRLMEKK 137
>gi|189347315|ref|YP_001943844.1| sun protein [Chlorobium limicola DSM 245]
gi|189341462|gb|ACD90865.1| sun protein [Chlorobium limicola DSM 245]
Length = 451
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 26/173 (15%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +++ +R A++ L I+ + + E ++ +
Sbjct: 1 MTKKESM----------TSRELALKVLQNIESGEKKSGTALHEQLSH-----------TS 39
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D +++GV+ R+ +D I ++ + +L +ILR G +LI
Sbjct: 40 LNQNDRALATELVNGVLRRRLTLDTFIGRYYHHRY--EKAAPVLKNILRIGAYQLIYLDR 97
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSGCVSAITQ 170
+P ++E V +A + K +NAVL ++ + ++ SG + I +
Sbjct: 98 IPHWAAVNESVSLARRYKGEHMAKLVNAVLRNITPETISADLDPSGKMKEIQR 150
>gi|322390165|ref|ZP_08063697.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
903]
gi|321143125|gb|EFX38571.1| N utilization substance protein B [Streptococcus parasanguinis ATCC
903]
Length = 143
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ + + Y D D E + ++
Sbjct: 8 ESRRDLRERAFQALMALE---YDGDIVEACRFAYLHDKDLAEDKEVDLP----AFLMNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +
Sbjct: 61 TGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEMTEFD-TPQIVAVNEAVEL 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A F +F+N VL + +E
Sbjct: 120 AKAFSDETSSRFVNGVLSQFVTEE 143
>gi|94995000|ref|YP_603098.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS10750]
gi|94548508|gb|ABF38554.1| N utilization substance protein B [Streptococcus pyogenes
MGAS10750]
Length = 156
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I++ + + + D ++ L + + ++
Sbjct: 13 NSRRDLRERAFQALFNIEMGAE-----LLAASQFAYGYDKVTGEDAQVLEL-PIFLLSLV 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 67 MGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149
>gi|65321192|ref|ZP_00394151.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Bacillus anthracis
str. A2012]
Length = 444
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L +S D+ I++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKSTIDRKDIGLLTEIVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + ++I VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGIAGMVNGVLRSIQRE 126
>gi|220912760|ref|YP_002488069.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
gi|254772610|sp|B8H8V2|NUSB_ARTCA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219859638|gb|ACL39980.1| NusB antitermination factor [Arthrobacter chlorophenolicus A6]
Length = 136
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A+ L++ + S +++ + + I
Sbjct: 1 MSARGKARSRALDVLFEAEQRSASAFDVLRARRE-------------KTDQIVNPYTLEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ R+Q ID + ++ WS R+ + ILR G EL+ VP V +SE V
Sbjct: 48 VEGVVSRQQAIDEFL-ETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + P+FIN +L ++ +
Sbjct: 107 LAKTLSTDESPQFINGLLGRLQQ 129
>gi|295093397|emb|CBK82488.1| transcription antitermination factor NusB [Coprococcus sp. ART55/1]
Length = 159
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE---TYRFCADTELDVESVYLHVDLEWFRVI 72
R R + ++ ++ + ++ + + + + + D ++
Sbjct: 3 RRDIRDRIFKIVFTLEFNDAEGMQDQLDFAFDPEMPGDEEDDPLLYGIVSNEDRDYITTK 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ +K ID +I S ++E W R+ +ILR GV E+ S+P +V I+E V
Sbjct: 63 VKNIISKKAEIDEII-SQISEGWKLPRIGKEELAILRLGVYEVKYDESIPEKVAINEAVE 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A + KF+NA+L K+ ++ K+ A +
Sbjct: 122 LAKKYCDASASKFVNALLAKLVSGDKDKKESGADATAE 159
>gi|313887990|ref|ZP_07821668.1| transcription antitermination factor NusB [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845945|gb|EFR33328.1| transcription antitermination factor NusB [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 132
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 14/144 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S +R AR+ A+QAL+ +D+ +T+ + + + ++++ +
Sbjct: 1 MSRKR--ARIGAMQALFAMDVNDDFSTDKLDLFMEN-----------HEFQGDEVDYIKR 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ ++D+ +D I L W+ +RL + ILR V E + +P EV I+E V
Sbjct: 48 TVPDILDKLDLVDETIEKNLKG-WTMARLAKVDRQILRIAVYEFLYKDDIPEEVSINEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
IA + + PKFIN +L + R
Sbjct: 107 EIARLYSSDEAPKFINGILGTIYR 130
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 14/156 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL ++D Y + + D +++
Sbjct: 2 KKNNVRDIALEALMKLDQNQ-----------AYSNLLLKSVIKSNELSDQDRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKTALDYMLKPFINKPAKVKPW---VIQLLRLSLYQMEYLEKIPHRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ F+N VL V R+ + +T+
Sbjct: 108 KKRGHKGIASFVNGVLRSVQREGVPSFAAINDPVTR 143
>gi|225619886|ref|YP_002721143.1| transcription antitermination protein NusB [Brachyspira
hyodysenteriae WA1]
gi|225214705|gb|ACN83439.1| transcription antitermination protein NusB [Brachyspira
hyodysenteriae WA1]
Length = 181
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
Query: 3 IQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
++N KDL LS R AR+ AV +LY +I D +
Sbjct: 34 NKENIKDLDLSSYGARRQARIYAVMSLYSYEINDR----------KETINEILSFDYDKK 83
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
E+ R ++ G ++ + ID LI + W R+ + SI+R + LI
Sbjct: 84 IPENIFEFTRTLVEGTINNLERIDNLIEKY-SNNWDIKRIQYVDKSIIRMSIYSLIFLKD 142
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P V+I E V I+ F D KF+N +LD + K+
Sbjct: 143 IPKSVVIDEAVEISKIFSDKDSYKFVNGILDGIQEKD 179
>gi|260588123|ref|ZP_05854036.1| transcription antitermination factor NusB [Blautia hansenii DSM
20583]
gi|260541650|gb|EEX22219.1| transcription antitermination factor NusB [Blautia hansenii DSM
20583]
Length = 135
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 10/142 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+ + + S + +
Sbjct: 3 RREMREHIFKLLFLGEFNET---------AEMPEQIQLYFEGLSDLQPTEQAYMENKYAL 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + + ID L++ + W R+ + +ILR V E+ VPV+V I+E V I+
Sbjct: 54 VKEHLEEIDALLNEK-SAGWKTKRMSKVDLNILRLAVYEMKYDEDVPVKVAINEAVEISK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
F D F+N +L K++R++
Sbjct: 113 SFGGDDSASFVNGILGKIARED 134
>gi|78046359|ref|YP_362534.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325928457|ref|ZP_08189648.1| transcription antitermination factor NusB [Xanthomonas perforans
91-118]
gi|119390847|sp|Q3BXH9|NUSB_XANC5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|78034789|emb|CAJ22434.1| transcription termination factor NusB [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325541174|gb|EGD12725.1| transcription antitermination factor NusB [Xanthomonas perforans
91-118]
Length = 162
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIAQF-----------AHEQAHEVADLAYFENLVEGVLSNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L S +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167
++N VLD+ + + SG A
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159
>gi|307299170|ref|ZP_07578971.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
gi|306914966|gb|EFN45352.1| NusB antitermination factor [Thermotogales bacterium mesG1.Ag.4.2]
Length = 148
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A+YQ D E + Y + +E ++F
Sbjct: 5 PNNSRRKMREIVFSAIYQFDFN-----EDMESSSDYLEQELSFFSMEMEMKLRTRKYF-- 57
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ + ID +I LT W+F RL ++LR G E+I +P+EV ++E +
Sbjct: 58 --DTILKNRNEIDEIIRKHLTN-WTFERLASTDKNVLRLGAYEIIYEPDIPIEVTLNESI 114
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+N VLDK++R+
Sbjct: 115 DIAKKYGSEQGGKFVNGVLDKIARE 139
>gi|325971258|ref|YP_004247449.1| NusB antitermination factor [Spirochaeta sp. Buddy]
gi|324026496|gb|ADY13255.1| NusB antitermination factor [Spirochaeta sp. Buddy]
Length = 152
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+Q LY +D + + + + +
Sbjct: 1 MKTRHKARELALQTLYAMDFNKE-----LDVLHIPAIFSGNTEEEHDQLEEEVKIYGMYL 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ ID LIS + R+D++ +ILR V + ++ +II E V
Sbjct: 56 VRGTLENLFEIDELISKY-SLNRPIERIDIVDRNILRMSVF-CLRFGNIHPHIIIDEAVK 113
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
++ DF KFIN +LD + ++
Sbjct: 114 LSQDFSTEVNYKFINGILDTMQKQL 138
>gi|332653013|ref|ZP_08418758.1| transcription antitermination factor NusB [Ruminococcaceae
bacterium D16]
gi|332518159|gb|EGJ47762.1| transcription antitermination factor NusB [Ruminococcaceae
bacterium D16]
Length = 164
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 4/155 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIIS---EYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV ++ + S E++ E + + R +
Sbjct: 3 RSTAREIAVHLIFSLGFGTQSAEEVLDSELTRERFEELGGESQLYAQFPNEKQERYIRDL 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV +D I+ WSF+R+ + +ILR + E++ +P I V
Sbjct: 63 VRGVFAHGPELDDYIARY-AVGWSFARIPRMAAAILRTAMYEVLYMPDIPNAAAIDAAVE 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ + + F+N +L R E
Sbjct: 122 MTKKYEPQEVAAFVNGILGTFVRTEFPDTPAKPEK 156
>gi|146329208|ref|YP_001209382.1| transcription antitermination factor NusB [Dichelobacter nodosus
VCS1703A]
gi|146232678|gb|ABQ13656.1| transcription antitermination factor NusB [Dichelobacter nodosus
VCS1703A]
Length = 145
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + ++ +R AR +Q LYQ IIG + +++
Sbjct: 1 MSTANLRRQA--IEQRSQARRQLLQGLYQWQIIGDDAEIVKEN-----------QMIDAR 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+D ++F + + +D + + + + LD + +IL G+ EL +
Sbjct: 48 AGEIDHDYFDAAWAYITTNTEQLD--CCAADFIRRNMATLDPVEHAILWIGIYELTQRID 105
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ VII+E V +A F D KF+N VLD+ +++ +
Sbjct: 106 IHQNVIINEAVELAKQFGSDDGYKFVNGVLDQCAKRHRAR 145
>gi|163941603|ref|YP_001646487.1| sun protein [Bacillus weihenstephanensis KBAB4]
gi|163863800|gb|ABY44859.1| sun protein [Bacillus weihenstephanensis KBAB4]
Length = 444
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L Q++ G Y L ++ D+ +++G
Sbjct: 2 RQNVRELALDGLIQVEKSG-----------AYSNLLLNNLIEKNTIDRKDIGLLTEMVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+ +D + L +++ + +LR + +++ VP I E V IA
Sbjct: 51 TIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ +N VL + R+
Sbjct: 106 RRGHKGISGMVNGVLRSIQRE 126
>gi|320104116|ref|YP_004179707.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
gi|319751398|gb|ADV63158.1| NusB antitermination factor [Isosphaera pallida ATCC 43644]
Length = 177
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +Q LY +D + E I ++ +R + D R +I
Sbjct: 4 QPHTRCREIVLQVLYMLDHNTGLSQEEIEQFLAWRLREPSWRDE-----------ARGLI 52
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV ++ ID +I S L W R+ I ++LR G E++ VPV V I+E V +
Sbjct: 53 EGVRRHRETIDQVI-SDLARNWRLDRMAAIDRNVLRLGTYEVLYRLDVPVAVAITEAVEL 111
Query: 134 AHDFFYGDEPKFINAVLDKV 153
F +F+N +L +V
Sbjct: 112 VKRFGSAQSSRFVNGILGRV 131
>gi|291542871|emb|CBL15981.1| transcription antitermination factor NusB [Ruminococcus bromii
L2-63]
Length = 164
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R A L+ E I + + + ++ G
Sbjct: 31 RSESREQAFMLLFSKSFDDEPLEETIDDNSEMFVGGVC-------------AYAQAVVSG 77
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ D+ + ID +I+S L + W+ SR+ +ILR + E+ +VP V I+E V +A
Sbjct: 78 IEDKHEEIDEIIASHLKKGWTLSRISKPSLAILRLAIYEMKYLDNVPQSVSINEAVELAK 137
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ DE KF+N +L SR+
Sbjct: 138 KY-TIDESKFVNGILGTYSRE 157
>gi|307265164|ref|ZP_07546723.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919786|gb|EFN50001.1| NusB antitermination factor [Thermoanaerobacter wiegelii Rt8.B1]
Length = 140
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ D+ ++I + + E+ +
Sbjct: 2 NRTEAREWVVKMLYQYDVSRLPISKIFENF------------YKENDPGEQKEYIENTVI 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA
Sbjct: 50 GAIEHLEEIDKEI-ERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D FIN +L R + ++
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEE 134
>gi|296454538|ref|YP_003661681.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
gi|296183970|gb|ADH00852.1| NusB antitermination factor [Bifidobacterium longum subsp. longum
JDM301]
Length = 187
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D ++ E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAH-----------PGAQTPLPDYAIEIVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A
Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
D P FI+ +L V ++ + +
Sbjct: 111 TLCDDDSPAFIHGLLSAVC----TAKNAAPAPES 140
>gi|210622413|ref|ZP_03293145.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
gi|210154229|gb|EEA85235.1| hypothetical protein CLOHIR_01093 [Clostridium hiranonis DSM 13275]
Length = 441
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA + L I+I Y A ++ D +++GV+
Sbjct: 2 NAREAAFKILCDIEIEK-----------NYSNMAINKIFKNEKISDKDKGLATELVYGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ ++++D +I+ ++ + ILR G +++ + ++E V +A +
Sbjct: 51 ENRKYLDFIINKLSKI--KVKKMSSFVKIILRMGTYQILFLDKIEDHAAVNETVKLASKY 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
G F+NA+L R++ +
Sbjct: 109 -DGKSKGFVNAILRNEIRQKRTIK 131
>gi|310658653|ref|YP_003936374.1| transcription antitermination protein [Clostridium sticklandii DSM
519]
gi|308825431|emb|CBH21469.1| transcription antitermination protein [Clostridium sticklandii]
Length = 133
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R AAV+ Y++DI + + E+ + + + + +
Sbjct: 2 KRKELREAAVKLFYEMDIQKTFEHKFYKNFLA-----------ENELVALKDNYLKEVFD 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ + +ID +I + W R+ + SILR + E++ +P +V I+E + +A
Sbjct: 51 NFLLNRDNIDDIIQKS-STSWDIKRIAKVDLSILRVAITEILYLSDIPDKVSINEAIDLA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ + KF+N +L K+ + E
Sbjct: 110 KKYGDENSYKFVNGLLGKIVKNEN 133
>gi|226311922|ref|YP_002771816.1| N utilization substance protein B [Brevibacillus brevis NBRC
100599]
gi|226094870|dbj|BAH43312.1| N utilization substance protein B [Brevibacillus brevis NBRC
100599]
Length = 137
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR VQ L+QID+ T+ ++ + ++ R ++
Sbjct: 5 KRRTAREKVVQCLFQIDMAEVPLTDAVALVMEE--------------SEENAQYLRYLLD 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ID I L W R+ + +ILR E++ P +V+++E + +A
Sbjct: 51 GVLKNLTEIDAEIKKYL-RGWQLERIANVDRAILRLAFYEIMFEQDTPDKVVMNEAIEVA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F ++IN VL + E K++
Sbjct: 110 KLFSDEQSHRYINGVLSSFLQSRETKQA 137
>gi|313885233|ref|ZP_07818985.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619924|gb|EFR31361.1| ribosomal RNA small subunit methyltransferase B [Eremococcus
coleocola ACS-139-V-Col8]
Length = 456
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ +AR A QA +Q + + + + Y E+ VD
Sbjct: 1 MKVKKNVARKLADQARFQALL----ILDQVENHGGYSNVLLDRFHQETSLSPVDTNLVVK 56
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ R+ +D + ++D + S+LR + + I +P + S+ V
Sbjct: 57 LVYGVIQRRYSLDYFL----APFIKGKKVDDWVASLLRLSIYQFIYLDRIPDHAVFSQAV 112
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+A + F+N VL R+ ++
Sbjct: 113 EMAKLIGHAGLGGFVNGVLRNFQRRADL 140
>gi|253578527|ref|ZP_04855799.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850845|gb|EES78803.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 140
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R + L+ + E D D E+
Sbjct: 2 RRREQREHIFKLLFMTEFNSE---------EEMSEQLSLYFDTLEELSEKDQEYMSRKYR 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+++ ID L++ + W R+ + + LR V EL VP V I+E V +A
Sbjct: 53 HVLEKLDEIDALLNET-SNGWKTKRMSRVDLTALRLAVYELKYDKDVPTGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
F F+N +L K++ E ++S
Sbjct: 112 KRFGGETSGSFVNGILGKIANSESEEKS 139
>gi|145224311|ref|YP_001134989.1| Fmu (Sun) domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315444643|ref|YP_004077522.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
gi|145216797|gb|ABP46201.1| Fmu (Sun) domain protein [Mycobacterium gilvum PYR-GCK]
gi|315262946|gb|ADT99687.1| tRNA/rRNA cytosine-C5-methylase [Mycobacterium sp. Spyr1]
Length = 462
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 58/171 (33%), Gaps = 19/171 (11%)
Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT D K+ R+ + AR AA L + + R
Sbjct: 1 MTRPDKKRPP---RRKRLDPARQAAFDVLRAVSERDSYANLALPALLRDR---------- 47
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + +G K +D +I++ +D IL +LR G +++
Sbjct: 48 -RITGRDAAFATELTYGTCRAKGLLDAVIAA--AAGRPVDHIDPILLDLLRLGAYQIL-R 103
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V +S V A F F+N VL ++R++E ++
Sbjct: 104 TRVDDHAAVSTTVEQAGLEFDTARAGFVNGVLRTIARRDEADWVAELAPPA 154
>gi|255327156|ref|ZP_05368231.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
25296]
gi|283458028|ref|YP_003362637.1| transcription termination factor [Rothia mucilaginosa DY-18]
gi|255295774|gb|EET75116.1| transcription antitermination factor NusB [Rothia mucilaginosa ATCC
25296]
gi|283134052|dbj|BAI64817.1| transcription termination factor [Rothia mucilaginosa DY-18]
Length = 136
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL A++ L++ D E++ Y + + I
Sbjct: 1 MNSRTKARLRALEVLFEADQRNEDYIEVLRRRRLYTVAQIS-------------AYSEEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV D + I + WSF R+ + ++LR G EL+ VP V ISE V
Sbjct: 48 IRGVRDHDEEIREFV-ETYARDWSFERMPAVDRAVLRIGTWELLYNDEVPDAVAISEAVG 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + PKF+N +LDK+
Sbjct: 107 LARVLSTNESPKFVNGLLDKL 127
>gi|328950344|ref|YP_004367679.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
14884]
gi|328450668|gb|AEB11569.1| NusB antitermination factor [Marinithermus hydrothermalis DSM
14884]
Length = 152
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 3/146 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A + L++ + E D + + + L + R ++ G
Sbjct: 2 RRKARELAFKVLFEHTLGAVPLEEAWRHATEGLVLEDDAPYGDVLDVEG-LTFARRLVEG 60
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + + +D + + E WSF ++ ++LR E++ P +I V IA
Sbjct: 61 YVAQAEAVDRALEETI-EGWSFGQMARTDLTVLRLAAYEMLY-EPTPYAPLIEVAVKIAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D +F+N VL ++ R+ +
Sbjct: 119 KYGGEDSGRFVNGVLGRLKRRIDAGE 144
>gi|303232029|ref|ZP_07318732.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
gi|302513135|gb|EFL55174.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-049-V-Sch6]
Length = 452
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ RL AV+AL I+ Y + + +D +F +++
Sbjct: 9 QKQNIRLLAVKAL-----------SDINRKGAYANIVLQDYISKYNLSDLDRRFFTELVY 57
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ R+ ++D +I +L ++ ILR GV ++I VP ++E V +A
Sbjct: 58 GVVRRRNYLDAIIVHFAKR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLA 115
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F+NA+L V R+++
Sbjct: 116 KKL-TRGLSGFVNAILRSVIREQD 138
>gi|255994610|ref|ZP_05427745.1| transcription antitermination factor NusB [Eubacterium saphenum
ATCC 49989]
gi|255993323|gb|EEU03412.1| transcription antitermination factor NusB [Eubacterium saphenum
ATCC 49989]
Length = 135
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR A+Q ++QI + + ++ + + E + R
Sbjct: 1 MIINRSKARTIAMQIIFQIPVHKTTDKVLVDKILSDYKNIGKEE-----------AYIRE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ V D ID +++ + W+ + + +ILR V E+ +P V ++E V
Sbjct: 50 VFSLVTDNIDAIDAELNAKMKG-WTIDSIPKVDLAILRLAVAEICYAKDIPKVVAVNEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
IA F KFIN +L + + +
Sbjct: 109 RIAKKFSDDKSAKFINGILANIGKDYK 135
>gi|304316972|ref|YP_003852117.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778474|gb|ADL69033.1| sun protein [Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 447
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + LY+I + + ++++Y V+ + + I+ G +
Sbjct: 2 NQRNIAFKILYEILVKKGYSNIVLNKYLNN-----------DGIEDVEKSFIKEIVFGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D +I C T+ ++D + IL G+ +L+ VP I+E V + +
Sbjct: 51 ERKYTLDRIIDYCSTK--DIKKIDNKVLIILEMGLFQLMYMDKVPDYAAINESVNLTKEH 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+NAVL R
Sbjct: 109 VGKYASKFVNAVLRSYLRN 127
>gi|50914880|ref|YP_060852.1| transcription antitermination protein NusB [Streptococcus pyogenes
MGAS10394]
gi|50903954|gb|AAT87669.1| N utilization substance protein B [Streptococcus pyogenes
MGAS10394]
Length = 156
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R R A QAL+ I+ G + + D ++ L + + ++
Sbjct: 13 NSRRDLRERAFQALFNIE-TGAELLAA----SQFAYGYDKVTGEDAQVLEL-PIFLLSLV 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + K+ +D LIS+ L + WS RL + ++LR G+ E+ P V ++E + +
Sbjct: 67 TGVNNHKEELDNLISTHLKKGWSLERLTLTDKTLLRLGLFEIKYFDETPDRVALNEIIEV 126
Query: 134 AHDFFYGDEPKFINAVLDKVSRK 156
A + KFIN +L + +
Sbjct: 127 AKKYSDETSAKFINGLLSQYVSE 149
>gi|33594361|ref|NP_882005.1| transcription antitermination protein NusB [Bordetella pertussis
Tohama I]
gi|33595544|ref|NP_883187.1| transcription antitermination protein NusB [Bordetella
parapertussis 12822]
gi|33599942|ref|NP_887502.1| transcription antitermination protein NusB [Bordetella
bronchiseptica RB50]
gi|39931820|sp|Q7VTN3|NUSB_BORPE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39931833|sp|Q7W142|NUSB_BORPA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|39931858|sp|Q7WNT2|NUSB_BORBR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|33564436|emb|CAE43747.1| N utilization substance protein B [Bordetella pertussis Tohama I]
gi|33565622|emb|CAE40268.1| N utilization substance protein B [Bordetella parapertussis]
gi|33567539|emb|CAE31452.1| N utilization substance protein B [Bordetella bronchiseptica RB50]
gi|332383772|gb|AEE68619.1| transcription antitermination protein NusB [Bordetella pertussis
CS]
Length = 154
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y + G T+ E + + A+ + D +WF+ ++HGV+ +
Sbjct: 19 LQGVYAWLLRGGEGTQDAGEIDAHLRDAE-------DFSEADAQWFKTLLHGVLREAPVL 71
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ + L + IL G EL+ VP +V I+E V +A F D
Sbjct: 72 RERFLPYIDR--PLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGF 129
Query: 144 KFINAVLDKVSRKEEIKR 161
KF+N VLDK++
Sbjct: 130 KFVNGVLDKLAADVRTAE 147
>gi|21241522|ref|NP_641104.1| transcription antitermination protein NusB [Xanthomonas axonopodis
pv. citri str. 306]
gi|24638072|sp|Q8PPD5|NUSB_XANAC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21106870|gb|AAM35640.1| transcription termination factor NusB [Xanthomonas axonopodis pv.
citri str. 306]
Length = 159
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIAQF-----------AHEQAHEVADLAYFENLVEGVLSNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L S +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167
++N VLD+ + + SG A
Sbjct: 137 YVNGVLDRAAVEWRKVESGASGA 159
>gi|223043157|ref|ZP_03613204.1| transcription antitermination factor NusB [Staphylococcus capitis
SK14]
gi|314933698|ref|ZP_07841063.1| transcription antitermination factor NusB [Staphylococcus caprae
C87]
gi|222443368|gb|EEE49466.1| transcription antitermination factor NusB [Staphylococcus capitis
SK14]
gi|313653848|gb|EFS17605.1| transcription antitermination factor NusB [Staphylococcus caprae
C87]
Length = 129
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R+ A Q L+Q+++ + + ++ Y +D ++ ++
Sbjct: 2 SRKESRIQAFQTLFQLEMKESDLS-----------ITEAINFIKDDYPDLDFDFINWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D L + WS RL ILR E++ P +VII+E V +
Sbjct: 51 GVKDHEAVLDEKFKPYLKD-WSIERLLKSDRIILRMATFEMLHSD-TPEKVIINEAVELT 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F KFIN VL +
Sbjct: 109 KQFSDDGHYKFINGVLSNI 127
>gi|293607587|ref|ZP_06689921.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292814020|gb|EFF73167.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 169
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y + G T+ E + + + + D +WF+ ++HGV+ +
Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTE-------DFSEADAQWFKTLLHGVLREAPTL 84
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ + + L + IL G ELI VP +V I+E V +A F D
Sbjct: 85 RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142
Query: 144 KFINAVLDKVSRKEEIKR 161
KF+N VLDK++
Sbjct: 143 KFVNGVLDKLAADVRANE 160
>gi|166710625|ref|ZP_02241832.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 156
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIAQF-----------AHEQAHEVADLAYFENLVEGVLTNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVLINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGC 164
++N VLD+ + + SG
Sbjct: 137 YVNGVLDRAAVELRKVESGA 156
>gi|229822831|ref|ZP_04448901.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
gi|229787644|gb|EEP23758.1| hypothetical protein GCWU000282_00120 [Catonella morbi ATCC 51271]
Length = 457
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 15/150 (10%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K + R A+Q L +ID ++ Y +S VD
Sbjct: 4 KPQAAKRLKHNVRFQALQLLVEID-----------WHDQYSNVLLNRALSQSELKPVDQG 52
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+++G + + +D + + +L+ + S+LR +++ +P I
Sbjct: 53 LLVNLVYGSIQHRLTLDFYLEPFIKG----KKLEPWIRSLLRMTAYQMLYLERIPDHAAI 108
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+E V IA + +N VL R+E
Sbjct: 109 NEAVNIAKLNGHAGLAGLVNGVLRNFRRQE 138
>gi|255657701|ref|ZP_05403110.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
gi|260849889|gb|EEX69896.1| ribosomal RNA small subunit methyltransferase B [Mitsuokella
multacida DSM 20544]
Length = 452
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AV+ LY++ G Y A + + D + +++G +
Sbjct: 3 KARETAVRILYEVHENG-----------AYANVALAKALRQLDLGEQDRRFVTELVYGAV 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D ++ ++ ++ + ILR G+ ++ VP + V +A
Sbjct: 52 KAGGTLDWILRRYVSR--PVRKIQPFVREILRLGLYQIFYLDKVPASAACNTAVDLAKGM 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NAVL R+ E ++ S
Sbjct: 110 GVKGLSGFVNAVLRTAVREPE--KAAFPSG 137
>gi|83816060|ref|YP_444173.1| transcription antitermination factor NusB [Salinibacter ruber DSM
13855]
gi|294505831|ref|YP_003569889.1| N utilization substance protein B homolog [Salinibacter ruber M8]
gi|119390817|sp|Q2S6K8|NUSB_SALRD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|83757454|gb|ABC45567.1| transcription antitermination factor NusB [Salinibacter ruber DSM
13855]
gi|294342159|emb|CBH22937.1| N utilization substance protein B homolog [Salinibacter ruber M8]
Length = 160
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 15/156 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR ++ LY + + + D ++ +
Sbjct: 1 MSSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPST----------RDFAEHL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + D +I + W R+ I S+LR EL++ VP +V + E +
Sbjct: 51 FRETLKTMEEADEIIEKH-ADNWEIHRIAAIDRSLLRMATTELLKFEEVPPKVSVDEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS----RKEEIKRSGC 164
IA + F+N V+D + + + ++G
Sbjct: 110 IAKRYSTPRSGTFVNGVIDAILLDLHDQGRLNKTGR 145
>gi|307720293|ref|YP_003891433.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
gi|306978386|gb|ADN08421.1| NusB antitermination factor [Sulfurimonas autotrophica DSM 16294]
Length = 135
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+A V LY D+ +T+E E+ E + ++ +
Sbjct: 1 MATRQQARMAVVSLLYAYDLGNGNTSE-----------HSNEILEEKKIRNKQKDFALGL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GVM+ + ID I L E W F RL I + LR E++ + V+I+E V
Sbjct: 50 YEGVMEHIEEIDKAIVEHLKE-WDFERLGAIERATLRLATYEILFGE-LDSAVVINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
I F PKFIN VLD +++ + K
Sbjct: 108 ITKSFGTEQSPKFINGVLDAIAKDHKAK 135
>gi|116618710|ref|YP_819081.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227432118|ref|ZP_03914130.1| transcription antitermination protein NusB [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|116097557|gb|ABJ62708.1| NusB antitermination factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352145|gb|EEJ42359.1| transcription antitermination protein NusB [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 137
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R AA Q L+ ++ S +L + ++ +++G
Sbjct: 6 RHESRQAAFQVLFALEKDPQS-------------NKIDDLYEIVLNGKQFDDYLPRLVNG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ K +D ISS L E W+ +R++ ILR + EL + P +V I E + +A
Sbjct: 53 VLGSKADLDEKISSHLAEGWAINRINKADLVILRLAIYELTAVEATPYKVAIDEAIELAK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
F D+ KF+N VL +R E+
Sbjct: 113 TFADEDDRKFVNGVLKHFARDEKT 136
>gi|53804263|ref|YP_114097.1| N utilization substance protein B [Methylococcus capsulatus str.
Bath]
gi|81681940|sp|Q607V0|NUSB_METCA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|53758024|gb|AAU92315.1| N utilization substance protein B [Methylococcus capsulatus str.
Bath]
Length = 198
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 45/196 (22%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCA-------------------- 51
+S R +AR AAVQA+YQ + S +I ++ A
Sbjct: 1 MSLARTLARRAAVQAVYQWQLARDSLPDIERQFVEELQLAKSLYRRHAEGFELSPPEREQ 60
Query: 52 -----------------------DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
+ + V + +F+ ++HGV + +D ++
Sbjct: 61 LEELLEKFGRSQGTDEVEEEDVTLEQRASQCQVPDVQVGYFKELLHGVANNLALLDAALA 120
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L +D + +ILR G E + P VI++E + +A +F +++N
Sbjct: 121 KYLDR--PIDEVDPVERAILRIGCYEFMRRPETPYRVILNEAINLAKEFGAAQSYRYVNG 178
Query: 149 VLDKVSRKEEIKRSGC 164
+LD+V+ +
Sbjct: 179 ILDRVAHECRAVEMAA 194
>gi|326390202|ref|ZP_08211763.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
gi|325993850|gb|EGD52281.1| NusB antitermination factor [Thermoanaerobacter ethanolicus JW 200]
Length = 140
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR V+ LYQ D+ ++I + + E+ +
Sbjct: 2 NRTEAREWIVKMLYQYDVSRLPISKIFENF------------YKENDPGEQKEYIENTVI 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ + ID I ++ W+ +R+ I +ILR + E+ ++PV + I+E V IA
Sbjct: 50 GAIEHLEEIDKEI-ERYSQNWALNRMPKIDLAILRCSIYEMQY-GNIPVNISINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D FIN +L R + ++
Sbjct: 108 KKYSTEDSHVFINGLLGAFVRDKGLEE 134
>gi|163840712|ref|YP_001625117.1| transcription antitermination factor [Renibacterium salmoninarum
ATCC 33209]
gi|162954188|gb|ABY23703.1| transcription antitermination factor [Renibacterium salmoninarum
ATCC 33209]
Length = 143
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 19/155 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + R AR A+ L++ S E++
Sbjct: 1 MTEKS-----AGTSARSKARRRALDILFEAGQRDVSAAEVLKLRRERTDQIIN------- 48
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ II GV +++ ID + + W+ R+ + LR G EL+
Sbjct: 49 ------PYSVDIIDGVGQKQEEIDEFL-QTYAQGWTLERMPAVDLIALRIGAWELLYNDD 101
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
VP V +SE V +A + P+FIN +L ++ +
Sbjct: 102 VPDAVAVSEAVELAKQLSTDESPQFINGLLGRLQQ 136
>gi|225021344|ref|ZP_03710536.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
ATCC 33806]
gi|224945726|gb|EEG26935.1| hypothetical protein CORMATOL_01363 [Corynebacterium matruchotii
ATCC 33806]
Length = 277
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
LY+ + I+ + V+ + + II GV + ID
Sbjct: 1 MLYEAEARDVDPVAIVEDRINLA-------RVDITLVAPIAAYTSEIIAGVAEELNRIDD 53
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+I+ L E W SR+ + +ILR V E+I VPV+ +SE V +A + P +
Sbjct: 54 VIAEYLAENWELSRISAVDRAILRVAVWEMIFNPDVPVKTALSEAVELASQYSGASAPAY 113
Query: 146 INAVLDKVSRKEEIKR 161
INAVLD V + + R
Sbjct: 114 INAVLDSVVKNIDDLR 129
>gi|258511747|ref|YP_003185181.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478473|gb|ACV58792.1| NusB antitermination factor [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 166
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 18/161 (11%)
Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+QAL +D+ + E I+ R D + ++
Sbjct: 3 RHEARECALQALCVLDVQRDLGSAEAIASALAER----------GTDAGGDFTYIEELVD 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ID L++ + E+WS R+ + ++LR EL+ +P+ I E V IA
Sbjct: 53 GTRRHLDEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVEIA 111
Query: 135 HDFFYGDEPKFINAVLDKVS------RKEEIKRSGCVSAIT 169
F +F+N VL K+ R+ + + +G
Sbjct: 112 KTFATEQSGRFVNGVLAKLLPAVADRRRADTREAGQEKRTA 152
>gi|311108723|ref|YP_003981576.1| transcription antitermination factor NusB [Achromobacter
xylosoxidans A8]
gi|310763412|gb|ADP18861.1| transcription antitermination factor NusB [Achromobacter
xylosoxidans A8]
Length = 164
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y + G T+ E + + + + D +WF+ ++HGV+ +
Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTE-------DFSEADAQWFKTLLHGVLREAPAL 84
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ + + L + IL G ELI VP +V I+E V +A F D
Sbjct: 85 RQRFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142
Query: 144 KFINAVLDKVSRKEEIKR 161
KF+N VLDK++
Sbjct: 143 KFVNGVLDKLAADVRANE 160
>gi|323340820|ref|ZP_08081072.1| transcription antitermination factor NusB [Lactobacillus ruminis
ATCC 25644]
gi|323091943|gb|EFZ34563.1| transcription antitermination factor NusB [Lactobacillus ruminis
ATCC 25644]
Length = 128
Score = 88.3 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A Q L+ + + ++ D E + ++
Sbjct: 2 SRHDIRRLAFQTLFAMSSN---PDAVATDVYQTVLGKDIEAPE----------YLTQLVD 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + ID IS+ L + W SRL+ ++R V E+ VP +V ++E + ++
Sbjct: 49 GVNEHLAEIDEAISAHLKKGWPISRLNKTDLILMRIAVYEIKFVEEVPNKVSLNEALELS 108
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+F +FIN VL +
Sbjct: 109 KEFSDETSRRFINGVLSNLI 128
>gi|224476635|ref|YP_002634241.1| transcription antitermination protein NusB [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254772655|sp|B9DNQ0|NUSB_STACT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|222421242|emb|CAL28056.1| putative N utilization substance protein NusB [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 128
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A QAL+Q+++ + + ++ Y ++ ++ ++
Sbjct: 2 SRKESRSQAFQALFQLEMENTDLS-----------IDEAINFIKDDYPDLEFDFIYWLVS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I + L + W SRL ILR EL P +VII+E V +A
Sbjct: 51 GVKDHEPVLDEKIQNNLKD-WKISRLLKTDRIILRMAAFELANSD-TPPKVIINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ D +FIN VL +
Sbjct: 109 KQYSDDDHYRFINGVLSNL 127
>gi|195977499|ref|YP_002122743.1| transcription antitermination protein NusB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974204|gb|ACG61730.1| N utilization substance protein B-like NusB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 139
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QAL+ +++ G Y+ + AD + E + +++GVMD
Sbjct: 2 RERAFQALFTMEMGGDFLLASQFAYDYDKEVADDKQPSELPV------FLLNLVNGVMDH 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D +I L WS RL ++ ++LR G+ E+ P V ++E + IA +
Sbjct: 56 KAELDEVIKKNLKAGWSIERLTVVDKTMLRLGLFEMTLFEETPDRVALNEIIEIAKKYSD 115
Query: 140 GDEPKFINAVL 150
KFIN +L
Sbjct: 116 DTSAKFINGLL 126
>gi|295396131|ref|ZP_06806314.1| transcription antitermination factor NusB [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971072|gb|EFG46964.1| transcription antitermination factor NusB [Brevibacterium
mcbrellneri ATCC 49030]
Length = 134
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ L++ + E+I E+ + + R I+ GV+ + +
Sbjct: 12 LELLFEAEARNLPEAELIKLR-------------ENDEEYPLRPYSREIVDGVVTHRAQL 58
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI S W+ R+ + ++LR G+ E++ V V I E V +A ++ D P
Sbjct: 59 DELI-STYAHGWTLERMPRVDRAVLRIGLWEILYNDEVDDPVAIDEAVTLAKEYSTDDSP 117
Query: 144 KFINAVLDKVSRKEEI 159
F+NA+LD++S+ ++
Sbjct: 118 AFVNALLDRISKLKDT 133
>gi|78189086|ref|YP_379424.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
gi|78171285|gb|ABB28381.1| Fmu, rRNA SAM-dependent methyltransferase [Chlorobium
chlorochromatii CaD3]
Length = 429
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 13/137 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+Q L ++ + ++ ++ S V+ +++GV
Sbjct: 2 STAREVALQVLQALEKSSERSDALLHKHLE-----------ASGLERVERALATELVNGV 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + +D IS L +L +ILR G +L+ +P ++E V +A
Sbjct: 51 LRWQLQLDSRIS--LAYHHKLEAAAPVLRNILRLGAYQLLFLTKIPRWAAVNECVKLARK 108
Query: 137 FFYGDEPKFINAVLDKV 153
+ K +N VL +
Sbjct: 109 YKGERMAKLVNGVLRHL 125
>gi|291531066|emb|CBK96651.1| transcription antitermination factor NusB [Eubacterium siraeum
70/3]
Length = 143
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R AA+ L+Q+ + + EI+ + + V+ ++ G
Sbjct: 8 RHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVK-------------LVKG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + + ++ +I + R+ I +I+R + E+ C SVP +V I+E + A
Sbjct: 55 VAEHEDELNGII-ESYSPSRKLDRISYINLAIMRIALYEMKYCPSVPDKVAINEAIEFAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ + +FIN VL+ + K
Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140
>gi|224531581|ref|ZP_03672213.1| transcription antitermination factor NusB [Borrelia valaisiana
VS116]
gi|224511046|gb|EEF81452.1| transcription antitermination factor NusB [Borrelia valaisiana
VS116]
Length = 145
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIE-------NESIKSFYSSLVNGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + +I E + IA
Sbjct: 58 FNNLEHIDNLI-RDISLNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|168335572|ref|ZP_02693635.1| transcription termination factor [Epulopiscium sp. 'N.t. morphotype
B']
Length = 135
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR+ VQ LY + + + G
Sbjct: 3 RRQARICVVQMLYNLSFHDK--EQAQEILNENLL----------DIKGKVKTFISETFEG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++D ID I + L + W+ SR+ + ILR V E+ +P +V I+E V IA
Sbjct: 51 IVDNMDAIDTEIEANLVD-WNLSRIAKVDLMILRLAVYEINYAKDLPPKVAINEAVEIAQ 109
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
++ KFIN +L +++K
Sbjct: 110 EYSTEKSGKFINGILGNMNKK 130
>gi|183221521|ref|YP_001839517.1| transcription antitermination protein NusB [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189911605|ref|YP_001963160.1| transcription antitermination protein NusB [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|238687781|sp|B0SB76|NUSB_LEPBA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238687828|sp|B0ST01|NUSB_LEPBP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|167776281|gb|ABZ94582.1| Transcription antitermination protein [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779943|gb|ABZ98241.1| N utilization substance protein B-like protein (Protein NusB); L
factor [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 140
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+ LYQID++G + + + ++ +
Sbjct: 1 MSSRHRGRSLALMCLYQIDLVGTDPDRAMKFDW-----------YDKKITREEKDYAVFL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ ++ ID LI +E W SR+ ++ ILR +L L + + V+I+E V
Sbjct: 50 VKGVVENRKAIDTLIKKY-SENWELSRISVVNRCILRLSILSLQKEPFLAAPVVINEAVE 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ +F + +FIN +LD +KE
Sbjct: 109 LTKEFETEESAQFINGLLDAFYKKE 133
>gi|163858272|ref|YP_001632570.1| transcription antitermination protein NusB [Bordetella petrii DSM
12804]
gi|163262000|emb|CAP44302.1| N utilization substance protein B homolog [Bordetella petrii]
Length = 138
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y + G T+ E + + AD + D +WF+ ++HGV+ +
Sbjct: 1 MQGVYAWLLRGGEGTQDAGEIDAHLRDAD-------DFSEADAQWFKTLLHGVLQEAGGL 53
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ + L + IL G EL+ VP +V I+E V +A F D
Sbjct: 54 RERFTPYIDR--PLGELSPVEHGILLIGSYELVHHLEVPYKVAINEAVELAKSFGGTDGF 111
Query: 144 KFINAVLDKVSRKEEIKR 161
KF+N VLDK++
Sbjct: 112 KFVNGVLDKLAADVRAAE 129
>gi|323488925|ref|ZP_08094162.1| N utilization substance protein B-like protein (NusB-like protein)
[Planococcus donghaensis MPA1U2]
gi|323397317|gb|EGA90126.1| N utilization substance protein B-like protein (NusB-like protein)
[Planococcus donghaensis MPA1U2]
Length = 129
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 17/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+Q L+Q++ + E + + ++ +++
Sbjct: 2 KRHEAREKALQTLFQLEGTELTINEAMDHV----------------MAGENDNFYDLLVQ 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ID + L E WS RL I +ILR + EL P V+++E + +
Sbjct: 46 GTYTNMATIDEKLVDHL-ENWSIERLPKIERTILRMAIFELEYMEDAPARVVMNEAIELC 104
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
F +F+N VL K + K
Sbjct: 105 KTFGDDKSSRFVNGVLSKFTDK 126
>gi|239917765|ref|YP_002957323.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
2665]
gi|239838972|gb|ACS30769.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
2665]
Length = 150
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R AV+ L++ + G + +E I + + ++ G
Sbjct: 18 RSRSRQRAVEILFEAEQRGSTVSEGIRTRRESTDLQVN-------------AYTQRLVEG 64
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE V +A
Sbjct: 65 VIADQERLDEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAA 123
Query: 136 DFFYGDEPKFINAVLDKVSR 155
D P+F+N +L ++ +
Sbjct: 124 QLSTDDSPEFVNGLLGRLQQ 143
>gi|270290385|ref|ZP_06196610.1| transcription antitermination factor NusB [Pediococcus acidilactici
7_4]
gi|270281166|gb|EFA26999.1| transcription antitermination factor NusB [Pediococcus acidilactici
7_4]
Length = 134
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 13/146 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+S R R +A + ++ + E+ + D +
Sbjct: 1 MSLNRHQMRESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADP-----------FLD 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV + I+ I L W+ +RL IL+ G E+ VP V I+E
Sbjct: 50 NLVTGVQENVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTE-VPNNVAINEA 108
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
+ +A + KFIN VL V++
Sbjct: 109 LELAKKYTDEKARKFINGVLSNVAKD 134
>gi|297537700|ref|YP_003673469.1| NusB antitermination factor [Methylotenera sp. 301]
gi|297257047|gb|ADI28892.1| NusB antitermination factor [Methylotenera sp. 301]
Length = 175
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 13/148 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R +R ++A+Y+ + T + ++ + Y D +F+ ++
Sbjct: 35 QNRRKSRELVLKAVYRGMLNQSEMTAVYR-----------DMAEDPDYAKADEAYFKQLL 83
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
V + +D +++ + + S L I +IL+ EL+ S+P V+I+E V +
Sbjct: 84 EAVGEHATELDEKMAAFIDRQ--VSELSPIEHAILQISGCELMFDMSIPYRVVINEGVEL 141
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
A + D K+IN VLDK++
Sbjct: 142 AKIYGGIDGHKYINGVLDKLAADVRASE 169
>gi|238924695|ref|YP_002938211.1| sun protein [Eubacterium rectale ATCC 33656]
gi|238876370|gb|ACR76077.1| sun protein [Eubacterium rectale ATCC 33656]
Length = 469
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L +I+ G + ++ D + ++ G ++
Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKY----------QYLSKQDRAFMTRLVDGTIEY 91
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I S ++ + ++LR V ++ +VP + +E V +A +
Sbjct: 92 MLQLDYIIDSFSKT--KVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL ++R +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168
>gi|331001107|ref|ZP_08324738.1| transcription antitermination factor NusB [Parasutterella
excrementihominis YIT 11859]
gi|329569412|gb|EGG51190.1| transcription antitermination factor NusB [Parasutterella
excrementihominis YIT 11859]
Length = 159
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +YQ + I D + D ++R ++HGV +
Sbjct: 26 EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 74
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++ + + + + L I +IL G EL P V+I+E V +A F
Sbjct: 75 PSLEASYAPHIDREVT--SLSPIERAILLIGTYELKNTT-TPYRVVINEAVELAKSFGGS 131
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D K++N VLDK+ +
Sbjct: 132 DGFKYVNGVLDKMVPELRPYE 152
>gi|167768546|ref|ZP_02440599.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
gi|167710070|gb|EDS20649.1| hypothetical protein CLOSS21_03105 [Clostridium sp. SS2/1]
gi|291560508|emb|CBL39308.1| ribosomal RNA small subunit methyltransferase RsmB
[butyrate-producing bacterium SSC/2]
Length = 447
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++D + IS ++ D +F ++ G ++R
Sbjct: 5 RECALDVLIKVDKKEELSHIAISNVLEKYQFSE----------KRDRAFFTRLVEGTLER 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID + + ++ ++LR G+ +++ VP +E V +A +
Sbjct: 55 QITIDYVADQFSKT--KIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112
Query: 140 GDEPKFINAVLDKVSRKEEI 159
F+N VL +SRK++
Sbjct: 113 SRLSGFVNGVLRNISRKKDE 132
>gi|331091280|ref|ZP_08340121.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330404727|gb|EGG84266.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 132
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+ I+ G + LD D +
Sbjct: 3 RTELRQHIFKILFLIEFNGRD---------EMSEQIELYLDNLEELSEKDRAYIENKYRS 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+++ + ID L+++ W +R++ + +ILR EL VPV V I+E V +A
Sbjct: 54 VVEKVEEIDELLNAN-ATGWKTARMNKVDLTILRLATYELKWDEDVPVGVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + P F+N VL K+
Sbjct: 113 KYSSEEGPSFVNGVLGKLV 131
>gi|224373796|ref|YP_002608168.1| transcription antitermination factor NusB [Nautilia profundicola
AmH]
gi|223589865|gb|ACM93601.1| transcription antitermination factor NusB [Nautilia profundicola
AmH]
Length = 136
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A +Q LY ++ + I ++ E+ + E+ + ++ GV
Sbjct: 5 THAREAVIQTLYAQEMGN---DQAIEQF--------DEILKDKKVKGSKAEFAKKLLKGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ID +I W F RLD + ILR G+ E++ P +++I E V IA +
Sbjct: 54 SEHIDKIDEII-KNHLIDWDFERLDKVDKQILRVGIYEILYTD-TPYQIVIDEAVKIAKN 111
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
F FIN +LD+V++++
Sbjct: 112 FSEDKAKSFINGILDRVAKEKMSNE 136
>gi|154487009|ref|ZP_02028416.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
L2-32]
gi|154084872|gb|EDN83917.1| hypothetical protein BIFADO_00847 [Bifidobacterium adolescentis
L2-32]
Length = 147
Score = 87.9 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 13/155 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQDI-----------LSLLAERIEQPGAQTPLPDYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ID ++ + W R+ ++ +ILR E++ VP V I E + +A
Sbjct: 52 VAEHIAAIDAMLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALSLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGC-VSAIT 169
D P FI+ +L VS E + +
Sbjct: 111 TLCDDDSPAFIHGLLSAVSADAEATEVAEQPTEPS 145
>gi|317498698|ref|ZP_07956990.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894040|gb|EFV16230.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 447
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++D + IS ++ D +F ++ G ++R
Sbjct: 5 RECALDVLIKVDKKEELSHIAISNVLEKYQFSE----------KRDRAFFTRLVEGTLER 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID + + ++ ++LR G+ +++ VP +E V +A +
Sbjct: 55 QITIDYVADQFSKT--KIRKCKPLIRALLRMGIYQILYMDQVPDSAACNEAVKLAKKRGF 112
Query: 140 GDEPKFINAVLDKVSRKEEI 159
F+N VL +SRK++
Sbjct: 113 SRLSGFVNGVLRNISRKKDE 132
>gi|303228540|ref|ZP_07315368.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
gi|302516787|gb|EFL58701.1| ribosomal RNA small subunit methyltransferase B [Veillonella
atypica ACS-134-V-Col7a]
Length = 452
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ RL AV+AL I+ Y + ++ +D +F +++
Sbjct: 9 QKQNIRLLAVKAL-----------SDINRKGAYANIVLQDYILKYNLSDLDRRFFTELVY 57
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ R+ ++D++I +L ++ ILR GV ++I VP ++E V +A
Sbjct: 58 GVVRRRNYLDVIIVHFANR--PIKKLSSMVVEILRLGVYQIIYMDKVPESAAVNESVKLA 115
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F+NA+L V R+++
Sbjct: 116 KKL-TRGLSGFVNAILRSVIREQD 138
>gi|296875879|ref|ZP_06899940.1| transcription antitermination factor NusB [Streptococcus
parasanguinis ATCC 15912]
gi|296433120|gb|EFH18906.1| transcription antitermination factor NusB [Streptococcus
parasanguinis ATCC 15912]
Length = 143
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ I + Y D D E + ++
Sbjct: 8 ESRRELRERAFQALMALE---YDGDIIEACRFAYLHDKDIAEDKEVDLP----AFLMNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +
Sbjct: 61 TGVYQSKDQLDQQIGQHLKAGWTVERLTLVEKNILRLGIYEITEFD-TPQIVAVNEAVEL 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A F +F+N VL + +E
Sbjct: 120 AKAFSDEISSRFVNGVLSQFVTEE 143
>gi|317481639|ref|ZP_07940674.1| transcription antitermination factor NusB [Bifidobacterium sp.
12_1_47BFAA]
gi|322689608|ref|YP_004209342.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. infantis 157F]
gi|316916929|gb|EFV38316.1| transcription antitermination factor NusB [Bifidobacterium sp.
12_1_47BFAA]
gi|320460944|dbj|BAJ71564.1| transcription antitermination factor NusB [Bifidobacterium longum
subsp. infantis 157F]
Length = 190
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 16/154 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D ++ E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKSQDILSLLDERIAH-----------PGAQTPLPDYAIEIVKG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID+ + + W R+ ++ +ILR E++ VP +V I E + +A
Sbjct: 52 VAEHRRQIDMTLDEH-STGWKVRRMGVVDRNILRIAAWEILFNDDVPDKVAIDEALALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
D P FI+ +L V ++ + +
Sbjct: 111 TLCDDDSPAFIHGLLSAVC----TAKNAAPAPES 140
>gi|251797738|ref|YP_003012469.1| sun protein [Paenibacillus sp. JDR-2]
gi|247545364|gb|ACT02383.1| sun protein [Paenibacillus sp. JDR-2]
Length = 491
Score = 87.9 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 14/154 (9%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q+ +K+ + + R R A+ L ++ G Y + E+
Sbjct: 26 QEGRKEQRPARVRT-PRELALDTLVKVAETG-----------AYSNLQLNRVLQEAQLQR 73
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D +++G + R+ +D + + +L+ + +LR +L+ +P
Sbjct: 74 ADAALVTELVYGTIQRQLTLDHWLGKFAAKG--LRKLEPWVHQLLRMSAYQLLYLDRIPA 131
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
++E V IA + +N +L + R
Sbjct: 132 HAAVNEAVTIAKRRGHQGISGMVNGILRSIDRNR 165
>gi|291526150|emb|CBK91737.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale DSM 17629]
Length = 469
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L +I+ G + ++ D + ++ G ++
Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKY----------QYLSKQDRAFMTRLVDGTIEY 91
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I S ++ + ++LR V ++ +VP + +E V +A +
Sbjct: 92 MLQLDYIIDSFSKT--KVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL ++R +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168
>gi|303258269|ref|ZP_07344276.1| transcription antitermination factor NusB [Burkholderiales
bacterium 1_1_47]
gi|302859022|gb|EFL82106.1| transcription antitermination factor NusB [Burkholderiales
bacterium 1_1_47]
Length = 188
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A+Q +YQ + I D + D ++R ++HGV +
Sbjct: 55 EFALQGVYQWLMSHTDPEAI-----------DAAALEAEDFDKADQAFYRELLHGVTEEF 103
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++ + + + + L I +IL G EL P V+I+E V +A F
Sbjct: 104 PSLETSYAPHIDREVT--SLSPIERAILLIGTYELKNTT-TPYRVVINEAVELAKSFGGS 160
Query: 141 DEPKFINAVLDKVSRKEEIKR 161
D K++N VLDK+ +
Sbjct: 161 DGFKYVNGVLDKMVPELRPYE 181
>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
Length = 453
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 16/149 (10%)
Query: 10 LKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+K +++ + R AA+QA+ +ID G Y E+ S D
Sbjct: 1 MKNTNKNIKSSVRDAALQAIERIDKGG-----------AYSNLLLNEMIQSSQLGEKDSR 49
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
F I++G + RK ++ + T +++ + +L +L+ VP +I
Sbjct: 50 LFTEIVYGTISRKLLLEYYLD---TFIHKRKKVEHWVRMLLILSFYQLLYLDKVPDHAVI 106
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+E V IA KF+N +L + R+
Sbjct: 107 NEAVEIAKRRGNLGTGKFVNGILRSLQRR 135
>gi|313905346|ref|ZP_07838712.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
gi|313469816|gb|EFR65152.1| NusB antitermination factor [Eubacterium cellulosolvens 6]
Length = 170
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 21/170 (12%)
Query: 15 RRGIARLAAVQALY--QIDIIGCSTTEIISEYETY-----------RFCADTELDVES-- 59
+R R + L+ Q + G E I +Y + A+ E ES
Sbjct: 2 KRSELRETIFRLLFMGQFEKSGEGKNEQIGDYLDEMRSGLIEVPYAKLAAEEETREESPA 61
Query: 60 -----VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D E+ R + + + ID I+ + W SR+ + SI+R V E
Sbjct: 62 FVSAIDVSGEDEEYIRTKLAKITEALPEIDEQINKA-SRGWKTSRMPKVDLSIIRLAVYE 120
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+I VP V I+E V IA + + FIN +L +++R + + G
Sbjct: 121 MIHDEDVPTGVAINEAVEIAKHYGGEESATFINGILGQIARNCDQETKGE 170
>gi|304436643|ref|ZP_07396612.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304370339|gb|EFM23995.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 137
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+ L+Q + + + D D DL + ++
Sbjct: 2 SRRHAREAALLTLFQREFDQDRPPTVAAG--------DLASDAVDGLTEKDLAYANGLVQ 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCI 133
G + ID I + ++W R+ + +++R E+ + I+E V +
Sbjct: 54 GTCSVQPEIDAAI-ERMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVEL 112
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + D +++N +L + +
Sbjct: 113 AKKYGSDDAGRYVNGILAALQK 134
>gi|121533700|ref|ZP_01665527.1| sun protein [Thermosinus carboxydivorans Nor1]
gi|121307691|gb|EAX48606.1| sun protein [Thermosinus carboxydivorans Nor1]
Length = 442
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A++ + ++DI G +++ + R D + +++G +
Sbjct: 2 NAREVALKVINRVDIDGAYANIALAQEMSQR-----------DLTDRDRRFITELVYGTV 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D ++S + ++ ++ +ILR G+ ++ +PV +E V +A +
Sbjct: 51 KAGATLDWILSHYSSR--PLDKIHPVIRNILRMGIYQIFFLSRIPVSAACNEAVKLAQKY 108
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ KF+NAVL R +
Sbjct: 109 GHAGTVKFVNAVLRSAGRSPD 129
>gi|225551926|ref|ZP_03772866.1| transcription antitermination factor NusB [Borrelia sp. SV1]
gi|225370924|gb|EEH00354.1| transcription antitermination factor NusB [Borrelia sp. SV1]
Length = 145
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIE-------NESIKSFYSSLVIGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + +I E + IA
Sbjct: 58 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAVIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|58583474|ref|YP_202490.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84625287|ref|YP_452659.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188575269|ref|YP_001912198.1| transcription antitermination protein NusB [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|75434146|sp|Q5GW16|NUSB_XANOR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119390848|sp|Q2NZ92|NUSB_XANOM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238689535|sp|B2SNW5|NUSB_XANOP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|58428068|gb|AAW77105.1| transcription termination factor NusB [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84369227|dbj|BAE70385.1| N utilization substance protein B homolog [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188519721|gb|ACD57666.1| transcription antitermination factor NusB [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 156
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIAQF-----------AHEQAHEVADLAYFENLVEGVLTNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGC 164
++N VLD+ + + SG
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156
>gi|238926870|ref|ZP_04658630.1| transcription antitermination protein NusB [Selenomonas flueggei
ATCC 43531]
gi|238885402|gb|EEQ49040.1| transcription antitermination protein NusB [Selenomonas flueggei
ATCC 43531]
Length = 137
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+ L+Q + + + D D DL + ++
Sbjct: 2 SRRHAREAALLTLFQREFDHDRPPIVAAG--------DLASDAVDGLTEKDLAYANRLVQ 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCI 133
G + ID I C+ ++W R+ + +++R E+ + I+E V +
Sbjct: 54 GTCSVQPEIDAAI-ECMAKEWKLHRMAPVDRNLIRMAYYEMCYQEERIDPPIAINEAVEL 112
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + D +++N +L + +
Sbjct: 113 AKKYGSDDAGRYVNGILAALQK 134
>gi|168705385|ref|ZP_02737662.1| transcription antitermination protein NusB [Gemmata obscuriglobus
UQM 2246]
Length = 139
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 22 AAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
+Q L+Q D + I ++ R D E+ + + GV RK
Sbjct: 1 MVLQLLFQWDQNPTKVPRKAIQQFARDRLLGDAEMST----------YALSLYDGVAGRK 50
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV-EVIISEYVCIAHDFFY 139
ID + W +R+ + ++LR G EL+ + EV+I+E + +A F
Sbjct: 51 DAIDEAL-KSAATNWRLTRMTPVDRNVLRLGAFELLFDAAPQPLEVVINEAIELAKRFGS 109
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
D P F+N VLD+V + + +++G S +
Sbjct: 110 EDSPAFVNGVLDRVGKMRDERKAGAGSGAS 139
>gi|289663670|ref|ZP_06485251.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. vasculorum NCPPB702]
gi|289671050|ref|ZP_06492125.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 156
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I ++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIGQF-----------AHEQAHEVADLAYFENLVEGVLSNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGC 164
++N VLD+ + + SG
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156
>gi|291527116|emb|CBK92702.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
rectale M104/1]
Length = 469
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L +I+ G + ++ D + ++ G ++
Sbjct: 42 RELALEMLIEINERGAFSHIVLRSVLDKY----------QYLSKQDRAFMTRLVDGTIEY 91
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I S ++ + ++LR V ++ +VP + +E V +A +
Sbjct: 92 MLQLDYIIDSFSKT--KVRKMKPFIRNLLRMSVYQIKYMDAVPDSAVCNEAVKLAKRHKF 149
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL ++R +
Sbjct: 150 AQLSGFVNGVLRNIARNID 168
>gi|302386503|ref|YP_003822325.1| sun protein [Clostridium saccharolyticum WM1]
gi|302197131|gb|ADL04702.1| sun protein [Clostridium saccharolyticum WM1]
Length = 446
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 12/147 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + +R ++ L +I G + I+ + + +
Sbjct: 1 MMTKETDSREIVLEILLEILERGGYSHIILRQALNKY----------QYLEKSERAFITR 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G ++ +D +I S ++ ++ +ILR V +L+ VP + +E V
Sbjct: 51 TVEGTVEYLLQMDYIIDSF--SNIKVRKMKPVIRTILRMSVYQLLYMDRVPDSAVCNEAV 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + F+N VL +SR +E
Sbjct: 109 KLAVKRKFTGLKGFVNGVLRNISRNKE 135
>gi|317405459|gb|EFV85770.1| N utilization substance protein B [Achromobacter xylosoxidans C54]
Length = 163
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y + G T+ E + + + + D +WF+ ++HGV+ +
Sbjct: 32 LQGVYAWLLRGGEGTQDAGEIDAHLRDTE-------EFSEADAQWFKTLLHGVLREAPAL 84
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ + + L + IL G ELI VP +V I+E V +A F D
Sbjct: 85 RERFTPYVDR--PLAELSPVEHGILLIGSFELIHHVEVPYKVAINEAVELAKSFGGTDGF 142
Query: 144 KFINAVLDKVSRKEEIKRS 162
KF+N VLDK++
Sbjct: 143 KFVNGVLDKLAADVRSHEM 161
>gi|183602591|ref|ZP_02963956.1| NusB antitermination protein [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683633|ref|YP_002470016.1| transcription antitermination factor NusB [Bifidobacterium animalis
subsp. lactis AD011]
gi|241190665|ref|YP_002968059.1| transcription termination factor [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196071|ref|YP_002969626.1| transcription termination factor [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|254772615|sp|B8DTW1|NUSB_BIFA0 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|183218232|gb|EDT88878.1| NusB antitermination protein [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621283|gb|ACL29440.1| transcription antitermination factor NusB [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249057|gb|ACS45997.1| Transcription termination factor [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240250625|gb|ACS47564.1| Transcription termination factor [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|289178403|gb|ADC85649.1| N utilization substance protein B [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295793654|gb|ADG33189.1| Transcription termination factor [Bifidobacterium animalis subsp.
lactis V9]
Length = 154
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 14/149 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E + E+ I+ G
Sbjct: 3 RSTARRRALNTLYEADEKGQD-----------FLSLLDERIAQPGAQTPLPEYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID ++ + W R+ I +ILR E++ VP +V I E + ++
Sbjct: 52 VDEHRRDIDSQLN-THSTGWKVKRMHAIDRNILRIATWEILYNDDVPDKVAIDEALNLSK 110
Query: 136 DFFYGDEPKFINAVLDKV--SRKEEIKRS 162
P FI+ VL + ++ ++ +S
Sbjct: 111 TLSDDAAPSFIHGVLSAIVAAKDKQSPQS 139
>gi|313884728|ref|ZP_07818484.1| transcription antitermination factor NusB [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620096|gb|EFR31529.1| transcription antitermination factor NusB [Eremococcus coleocola
ACS-139-V-Col8]
Length = 158
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AVQALY D + + + + ++ + Y V ++ ++
Sbjct: 5 VENRSQARQVAVQALY--DYTHFESNNDLDQALDFAL--ESGHFPDQGYDEVANDYLYLL 60
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV--PVEVIISEY 130
++GV+D ID I L W+ +R+ I +ILR EL+ P V + E
Sbjct: 61 LNGVVDHLSEIDAHIEKYLKN-WTLARIARIDLNILRVAFFELLYMDKEDVPARVTVDEA 119
Query: 131 VCIAHDFFYGDEPKFINAVL 150
+ ++ F +FIN VL
Sbjct: 120 IELSKFFSDDKSRQFINGVL 139
>gi|218289636|ref|ZP_03493856.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
gi|218240286|gb|EED07469.1| NusB antitermination factor [Alicyclobacillus acidocaldarius LAA1]
Length = 165
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A+QAL +D+ + E I+ R D + ++
Sbjct: 3 RHEARECALQALCVLDVQRDLGSAEAIASVLAERGLD----------AGGDWAYIEELVD 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ID L++ + E+WS R+ + ++LR EL+ +P+ I E V IA
Sbjct: 53 GTRRHLGEIDELLARHM-ERWSPERIGRVERNVLRLATYELLFEPELPIASAIDEAVQIA 111
Query: 135 HDFFYGDEPKFINAVLDKVS------RKEEIKRSG 163
F +F+N VL K+ R+ + G
Sbjct: 112 KTFATEQSGRFVNGVLAKLLPAVADRRRADACEEG 146
>gi|182417973|ref|ZP_02949281.1| transcription antitermination factor NusB [Clostridium butyricum
5521]
gi|237668086|ref|ZP_04528070.1| transcription antitermination factor NusB [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378144|gb|EDT75679.1| transcription antitermination factor NusB [Clostridium butyricum
5521]
gi|237656434|gb|EEP53990.1| transcription antitermination factor NusB [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 131
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R ++R A++ + + + E + + E +DL + + +
Sbjct: 2 NRKLSREKAMELFFGMTCSKDTVEEAVETFIDNY---------EGDIKELDLTYIKKALI 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + K+ ID ISS L + W R+ + +ILR E++ VP V I+E + I
Sbjct: 53 GIENNKEAIDEAISSNL-QNWKIDRISKVNLTILRLAAYEILFDEEVPRSVAINEALEIT 111
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ F+N VLDK+
Sbjct: 112 RKYSDEKSVSFVNGVLDKI 130
>gi|308276510|gb|ADO26409.1| N utilization substance protein B (Protein nusB) [Corynebacterium
pseudotuberculosis I19]
Length = 210
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 2 TIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
T + ++ + K R AR A + LY+ ++ II + + D +
Sbjct: 16 TSESSRVRGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVA---- 71
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + I+ G ID LI++ L E W R+ + ++LR V ELI
Sbjct: 72 ---PVAAYTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNED 128
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
VPV + + V + + P ++NA+LD +++ E R+
Sbjct: 129 VPVATAVVDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 170
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL +++ Y + + D +++
Sbjct: 2 KKNSVRDIALEALIKLEQNQ-----------AYSNLLLKSVIKSNELSDQDRALLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVKPW---VIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VL + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129
>gi|325923217|ref|ZP_08184896.1| transcription antitermination factor NusB [Xanthomonas gardneri
ATCC 19865]
gi|325546299|gb|EGD17474.1| transcription antitermination factor NusB [Xanthomonas gardneri
ATCC 19865]
Length = 131
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QA+Y I G ++IS++ E + DL +F ++ GV+ + +
Sbjct: 1 MQAVYAWQISGGFAKQVISQF-----------AHEQAHEVADLAYFESLVEGVLTNRAEL 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 50 DTALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGH 107
Query: 144 KFINAVLDKVSRKEEIKRSGCVSA 167
++N VLD+ S + SG A
Sbjct: 108 TYVNGVLDRASVEWRKVESGASGA 131
>gi|300858556|ref|YP_003783539.1| N utilization substance protein B-like protein [Corynebacterium
pseudotuberculosis FRC41]
gi|300686010|gb|ADK28932.1| N utilization substance protein B-like protein [Corynebacterium
pseudotuberculosis FRC41]
gi|302206268|gb|ADL10610.1| N utilization substance protein B (Protein nusB) [Corynebacterium
pseudotuberculosis C231]
gi|302330826|gb|ADL21020.1| N utilization substance protein B (Protein nusB) [Corynebacterium
pseudotuberculosis 1002]
Length = 208
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 8/162 (4%)
Query: 2 TIQDNK-KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
T + ++ + K R AR A + LY+ ++ II + + D +
Sbjct: 14 TSESSRVRGRKRHGSRYKARRRAAEVLYEAEVRDVDPVAIIEDRIALSYHQDLGVA---- 69
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + I+ G ID LI++ L E W R+ + ++LR V ELI
Sbjct: 70 ---PVAAYTKEIVAGTAQELDRIDGLIAANLAENWELERISAVDRAVLRVAVWELIFNED 126
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
VPV + + V + + P ++NA+LD +++ E R+
Sbjct: 127 VPVATAVVDGVELVSQYSTDVAPAYVNALLDSIAQNIESHRA 168
>gi|294627702|ref|ZP_06706284.1| transcription antitermination protein NusB [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|294667130|ref|ZP_06732355.1| transcription antitermination protein NusB [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292598054|gb|EFF42209.1| transcription antitermination protein NusB [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292603140|gb|EFF46566.1| transcription antitermination protein NusB [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 156
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIAQF-----------AHEQAHEVADLAYFENLVEGVLSNRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L S +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDR--SVEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGC 164
++N VLD+ + + SG
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156
>gi|222151417|ref|YP_002560573.1| transcription termination factor [Macrococcus caseolyticus
JCSC5402]
gi|254772646|sp|B9E6Q9|NUSB_MACCJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|222120542|dbj|BAH17877.1| transcription termination factor [Macrococcus caseolyticus
JCSC5402]
Length = 130
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A+Q L+QI+ E + + + D+ + ++H
Sbjct: 2 SRTESREHAIQILFQIE------------NEAHEISVEDATRFIVEPPNRDV-FADELVH 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ++ +D I+ L W+ RL+ I ILR EL+ P +VI++E V +A
Sbjct: 49 GVISKQNELDDKITPHLKS-WALERLNKIDRIILRLSAFELLYTD-APEKVIVNEAVNLA 106
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
F + KFIN VL ++ + +
Sbjct: 107 KKFSDDESYKFINGVLSEIIKNK 129
>gi|289706203|ref|ZP_06502566.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
gi|289557042|gb|EFD50370.1| transcription antitermination factor NusB [Micrococcus luteus SK58]
Length = 150
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R AV+ L++ + G + E I + + ++ G
Sbjct: 18 RSRSRQRAVEILFEAEQRGSTALEGIRTRRESTDLQVN-------------AYTQRLVEG 64
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ ++ +D +SS + WS R+ + +ILR G EL+ VP V ISE V +A
Sbjct: 65 VIADQERLDEALSSY-SRGWSLDRMPAVDLAILRVGAWELLFQDDVPDAVAISEAVALAA 123
Query: 136 DFFYGDEPKFINAVLDKVSR 155
D P+F+N +L ++ +
Sbjct: 124 QLSTDDSPEFVNGLLGRLQQ 143
>gi|312868252|ref|ZP_07728452.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0405]
gi|311095997|gb|EFQ54241.1| transcription antitermination factor NusB [Streptococcus
parasanguinis F0405]
Length = 143
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 8/144 (5%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A Q+L ++ + + Y D D E + ++
Sbjct: 8 ESRRDLRERAFQSLMALE---YDGDIVEACRFAYLHDKDLAEDKEVDLP----AFLMNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV K +D I L W+ RL ++ +ILR G+ E+ E P V ++E V +
Sbjct: 61 TGVYQSKDQLDQQIGQHLKTGWTVERLTLVEKNILRLGIYEITEFD-TPQIVAVNEAVEL 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A F +F+N VL + +E
Sbjct: 120 AKAFSDETSSRFVNGVLSQFVTEE 143
>gi|297195546|ref|ZP_06912944.1| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
gi|297152839|gb|EDY65275.2| RNA-binding Sun protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 291
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 12/170 (7%)
Query: 1 MTIQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ Q + K ++ R+ A +AL +D ++ + +
Sbjct: 1 MSEQSRHRPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLL-------KKAREK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D +I++C+ +D + +L G +L+
Sbjct: 54 DDFDGRDAALATELVYGTLRRQGTYDAIIAACIDR--PLREVDPPVLDVLALGAHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL K+S+ + V+
Sbjct: 112 R-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKISQHDMDAWLERVAPP 160
>gi|225166064|ref|ZP_03727805.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
gi|224799698|gb|EEG18186.1| NusB antitermination factor [Opitutaceae bacterium TAV2]
Length = 154
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R +R+AA+Q L+ + + +E + + + + ++
Sbjct: 8 QRRDSRVAAMQYLFAWSMNAPQNLSEDLRAF-----------YETQEHPREHYAYADEVV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ ID I L + W F R+ I +ILR + E+I VP V I+E + +
Sbjct: 57 DGVIRNLVEIDARI-RTLAQNWEFDRIARIDLTILRVAIYEMIFRKDVPPVVSINEAINL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRK--EEIKRSG 163
+ + D +FIN +LD++ + + +++G
Sbjct: 116 SKTYSNSDAKRFINGILDRLKDQLGRDARKAG 147
>gi|322379027|ref|ZP_08053430.1| transcription antitermination protein NusB [Helicobacter suis HS1]
gi|322380793|ref|ZP_08054899.1| transcription antitermination protein NusB [Helicobacter suis HS5]
gi|321146797|gb|EFX41591.1| transcription antitermination protein NusB [Helicobacter suis HS5]
gi|321148519|gb|EFX43016.1| transcription antitermination protein NusB [Helicobacter suis HS1]
Length = 133
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY + + E S++ R + ++ +
Sbjct: 1 MATRSQVREAVVGLLYAYESGNEAVLEKASDFLNQR-----------KIKNAQQQFALEL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G +DR +++D ++ L + W R+ + +ILR G E++ + P V I+E +
Sbjct: 50 LKGTLDRLENLDQILQPLLKD-WPIKRIGSMERAILRLGAYEVLYTTTKPPIV-INEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+A + PK INA+LD +++++
Sbjct: 108 LAKQYGEDQAPKLINAILDVLAKQK 132
>gi|152966952|ref|YP_001362736.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
gi|189035892|sp|A6WCD3|NUSB_KINRD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|151361469|gb|ABS04472.1| NusB antitermination factor [Kineococcus radiotolerans SRS30216]
Length = 136
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ L++ D G + +++ D E+ ++ GV++ + I
Sbjct: 12 LEVLFEADQRGLAPLDVLK-------------DKILRADPPVGEYAVTVVEGVVEHQARI 58
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ S + W R+ + ++LR G E++ VP V +SE V IA + + P
Sbjct: 59 DEVL-STYSMAWPLDRMPAVDRALLRIGTWEVLYAADVPDHVAVSEAVEIAQELSTDESP 117
Query: 144 KFINAVLDKVSRKEEI 159
KF+N +L +++ +E
Sbjct: 118 KFVNGLLARIAELKET 133
>gi|310642738|ref|YP_003947496.1| ribosomal RNA small subunit methyltransferase b [Paenibacillus
polymyxa SC2]
gi|309247688|gb|ADO57255.1| Ribosomal RNA small subunit methyltransferase B [Paenibacillus
polymyxa SC2]
Length = 471
Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 60/153 (39%), Gaps = 14/153 (9%)
Query: 10 LKLSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ R AR A+ L ++ G Y ++ D+
Sbjct: 17 IRPGKTRKQTAREVALDVLTGVEQEG-----------AYSNFELNRRLQQAGLSASDVGL 65
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G + R+ +D ++ + + ++L + S+LR V +L+ VP ++S
Sbjct: 66 TTELVYGTVARRNTLDYFLNKFVQKGT--AKLQPWVRSLLRMSVYQLVYLDRVPDHAVVS 123
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
E V IA + +N VL + R+ + R
Sbjct: 124 EAVTIAKRRGHQGISGMVNGVLRSMLREPDKLR 156
>gi|315656698|ref|ZP_07909585.1| transcription antitermination factor NusB [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492653|gb|EFU82257.1| transcription antitermination factor NusB [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 191
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R+ AV LY+ + G T E I R E+ + I+
Sbjct: 7 RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILE 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + + ID + + ++ W R+ + +I+R E++ V V I+ + IA
Sbjct: 60 GVAEHLERIDAAL-ATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIA 118
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
+ + PKFIN +L + +
Sbjct: 119 EERSTDESPKFINGLLGAIDDMRDT 143
>gi|303232700|ref|ZP_07319385.1| transcription antitermination factor NusB [Atopobium vaginae
PB189-T1-4]
gi|302481186|gb|EFL44261.1| transcription antitermination factor NusB [Atopobium vaginae
PB189-T1-4]
Length = 192
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+Q L+Q + +II+ + + E+ R + G
Sbjct: 10 RTRARSHALQLLFQAESRSMRVADIIN---AHYLITEG----------PLEEFARTLALG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ +D LI+ W+ +RL + +I+R + E++ V V V I+E+V +A
Sbjct: 57 ADAVRDKLDALIADT-ATNWNVTRLLSVDRNIIRLALFEMLHVDDVDVAVTINEFVILAK 115
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D F+N VL +V+R+
Sbjct: 116 AYGTDDSAAFVNGVLGQVARRLSAGE 141
>gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL +++ Y + + D +++
Sbjct: 2 KKTSVRDIALEALIKLEQNQ-----------AYSNLLLKSVIKSNELSDQDRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVKPW---VIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VL + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129
>gi|167758087|ref|ZP_02430214.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
gi|167663984|gb|EDS08114.1| hypothetical protein CLOSCI_00425 [Clostridium scindens ATCC 35704]
Length = 132
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R R + L+ ++ G E + Y DL++ R +
Sbjct: 2 KRTEQREHIFKMLFGVEFNAGGDMPEQLELY----------FGQLEGAGEKDLDYIREKV 51
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+ + + ID LI+ T +W SR++ + +ILR V E+ VP V I E V +
Sbjct: 52 QKIASKVEEIDALINEH-TTRWKTSRMNKVDLTILRLAVYEMRWDEDVPTGVAIDEAVEL 110
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
A + D P F+N VL K+
Sbjct: 111 AKKYSSEDGPSFVNGVLAKLV 131
>gi|313837743|gb|EFS75457.1| transcription antitermination factor NusB [Propionibacterium acnes
HL037PA2]
gi|314927375|gb|EFS91206.1| transcription antitermination factor NusB [Propionibacterium acnes
HL044PA1]
gi|314972681|gb|EFT16778.1| transcription antitermination factor NusB [Propionibacterium acnes
HL037PA3]
gi|328907460|gb|EGG27226.1| transcription antitermination factor NusB [Propionibacterium sp.
P08]
Length = 256
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ L++ D++G E+++ SV+++ + ++
Sbjct: 30 STRSKARKQALDILFEADLMGTDPLEVLAAR-------------PSVFINPVRPFAADLV 76
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + +D +++ CL+E W+ R+ + + R G E++ + V ISE + +
Sbjct: 77 RGVAATQAGLDSVLADCLSEGWTLDRMPRVDRILARLGTFEILHTDTPNPAV-ISEAIEL 135
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ +F D F+N +L V
Sbjct: 136 SEEFSTDDSAPFLNGLLSAVI 156
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
Length = 447
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL E + + + Y T + + D +++
Sbjct: 2 KKINVRELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFIRKPNKVKPW---VIQLLRLSAYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N +L + R+
Sbjct: 108 KKRGHKGIASFVNGILRSLQRE 129
>gi|15594453|ref|NP_212241.1| transcription antitermination protein NusB [Borrelia burgdorferi
B31]
gi|7387971|sp|O51134|NUSB_BORBU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|2687995|gb|AAC66498.1| N-utilization substance protein B (nusB) [Borrelia burgdorferi B31]
Length = 145
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
D +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 58 FDNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|221195846|ref|ZP_03568899.1| transcription antitermination factor NusB [Atopobium rimae ATCC
49626]
gi|221184320|gb|EEE16714.1| transcription antitermination factor NusB [Atopobium rimae ATCC
49626]
Length = 161
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +AR A+Q L+Q + + E++ E + L E G
Sbjct: 8 RTLARSQALQLLFQAEQTNRTVEEVLQ----------GEYVLSEGPLDPYAEKLACGTDG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ D +I + + WS SR+ + ++L+ + E++E V V + I+E + ++H
Sbjct: 58 IRDDLD----MILNAYSHGWSVSRMPSVDRNLLQLSLYEMLEVSEVDVSITINEVIELSH 113
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + P+FIN +L +V+
Sbjct: 114 AYCGDESPRFINGILGRVA 132
>gi|160939810|ref|ZP_02087157.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
gi|158437244|gb|EDP15009.1| hypothetical protein CLOBOL_04701 [Clostridium bolteae ATCC
BAA-613]
Length = 455
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G ++++ D + + G ++
Sbjct: 12 REIVLDILTEVLEQGAFVHLVLNQALQKY----------QYLGKADRSFITRAVEGTLEY 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +++ + S+LR V +++ VP + +E V +A +
Sbjct: 62 LIQIDEVINRYSKT--KINKMKPFIRSLLRMSVYQILYMDRVPDSAVCNEAVKMAVKRHF 119
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
F+N VL +SR++E S
Sbjct: 120 SGLKGFVNGVLRTISREKENLTFDTPS 146
>gi|325295064|ref|YP_004281578.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065512|gb|ADY73519.1| NusB antitermination factor [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 140
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +D KK AR A +YQ D+ G S EI Y ++
Sbjct: 1 MTNRDKKK----------AREHAYLMMYQYDLGGLSPEEIAFNYWE-----------DNK 39
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + ++ ++ID+ IS L + W SRL + SILR E+
Sbjct: 40 ESEEIKQMATYLFKKTVENLKNIDIEISRHLKKGWLISRLMPMDRSILRVATYEISNESF 99
Query: 121 VPVEVIISEYVCIAHDFF-YGDEPKFINAVLDKVSRKEEI 159
P+E +I++ V A + PKFINA+LDKV++ +E
Sbjct: 100 SPIEAVINDAVDAAKFYGEDEKSPKFINAILDKVAKNKET 139
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL +++ Y + + D +++
Sbjct: 2 KKTSVRDIALEALIKLEQNQ-----------AYSNLLLKSVIKSNELSDQDRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVKPW---VIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VL + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129
>gi|325963392|ref|YP_004241298.1| transcription antitermination factor NusB [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469479|gb|ADX73164.1| transcription antitermination factor NusB [Arthrobacter
phenanthrenivorans Sphe3]
Length = 136
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A+ L++ + S +++ + + I
Sbjct: 1 MSARGKARNRALDILFEAEQRSVSAFDVLRARRE-------------KTDQIINPYTLEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I GV+ ++ ID + ++ WS R+ + ILR G EL+ VP V +SE V
Sbjct: 48 IEGVVSQQTAIDEFL-ETYSQGWSLERMPSVDRIILRIGTWELLYNDDVPDGVAVSEAVA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + P+FIN +L ++ +
Sbjct: 107 LAKTLSTDESPQFINGLLGRLQQ 129
>gi|312149672|gb|ADQ29743.1| transcription antitermination factor NusB [Borrelia burgdorferi
N40]
Length = 142
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 55 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136
>gi|51598370|ref|YP_072558.1| transcription antitermination protein NusB [Borrelia garinii PBi]
gi|81610223|sp|Q662Q5|NUSB_BORGA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|51572941|gb|AAU06966.1| N-utilization substance protein B [Borrelia garinii PBi]
Length = 142
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFSIEDKGLDIE-------NESIKSFYSSLVNGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ ++ID LI ++ WS R+D + +ILR GV L + +I E + IA
Sbjct: 55 FNNLEYIDSLI-KDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136
>gi|285019596|ref|YP_003377307.1| transcription termination factor NusB [Xanthomonas albilineans GPE
PC73]
gi|283474814|emb|CBA17313.1| putative transcription termination factor nusb protein [Xanthomonas
albilineans]
Length = 155
Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G + +I+++ E + DL +F ++ GV+ + +D
Sbjct: 29 QAIYAWQISGGNAQHVIAQF-----------AHEQAHEIADLVYFENLVEGVLKHRAELD 77
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
+ L + +D I ++LR EL+ VP V+I+E + A F
Sbjct: 78 AALVGYLDR--TVEEVDAIERAVLRLAAYELLYRMDVPYRVVINEAIETAKRFGSEHGHT 135
Query: 145 FINAVLDKVSRKEEIKRSG 163
++N VLD+ + + SG
Sbjct: 136 YVNGVLDRAALEWRAVESG 154
>gi|304389451|ref|ZP_07371414.1| transcription antitermination factor NusB [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327261|gb|EFL94496.1| transcription antitermination factor NusB [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 191
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R+ AV LY+ + G T E I R E+ + I+
Sbjct: 7 RRTRERIRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILE 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + + ID + + ++ W R+ + +I+R E++ V V I+ + IA
Sbjct: 60 GVAEHLERIDAAL-ATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIA 118
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
+ + PKFIN +L + +
Sbjct: 119 EERSTDESPKFINGLLGAIDDMRDT 143
>gi|229541137|ref|ZP_04430197.1| sun protein [Bacillus coagulans 36D1]
gi|229325557|gb|EEN91232.1| sun protein [Bacillus coagulans 36D1]
Length = 447
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R AA++ L E + + E+Y + + D
Sbjct: 1 MSKERKNVREAALELL-----------EAVEKNESYSNLLLDRYIEKYRFHGPDRALLTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I +G + RKQ +D ++ L +++ + +LR + +++ +P II E V
Sbjct: 50 ITYGTLQRKQTLDYFLAPFLR-----KKIENWVRILLRLSLYQMVYLDKIPDRAIIFEAV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
IA + +N VL + R
Sbjct: 105 EIAKKRGHRGISGIVNGVLRAIQR 128
>gi|308233793|ref|ZP_07664530.1| NusB antitermination factor [Atopobium vaginae DSM 15829]
gi|328943758|ref|ZP_08241223.1| transcription antitermination factor NusB [Atopobium vaginae DSM
15829]
gi|327491727|gb|EGF23501.1| transcription antitermination factor NusB [Atopobium vaginae DSM
15829]
Length = 239
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +AR A+Q ++Q + ++++ + + + + G
Sbjct: 13 RTLARSQALQLMFQAESRNMQVCDVLATNYLLSEGPLDD-------------FGKRLALG 59
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +D LIS +T W+ +RL + +ILR + E+I+ V + V I+E V +A
Sbjct: 60 TDELRDKLDALISRVITN-WNLNRLLSVDRNILRLALYEMIKVDDVDIAVTINESVNLAK 118
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + F+N VL +V+R E R
Sbjct: 119 AYGTDESSHFVNGVLGQVARMMENGR 144
>gi|195941845|ref|ZP_03087227.1| transcription antitermination protein NusB [Borrelia burgdorferi
80a]
gi|225549246|ref|ZP_03770219.1| transcription antitermination factor NusB [Borrelia burgdorferi
94a]
gi|225370104|gb|EEG99544.1| transcription antitermination factor NusB [Borrelia burgdorferi
94a]
Length = 142
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 55 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136
>gi|111114929|ref|YP_709547.1| transcription antitermination protein NusB [Borrelia afzelii PKo]
gi|119372279|sp|Q0SP57|NUSB_BORAP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110890203|gb|ABH01371.1| N-utilization substance protein B [Borrelia afzelii PKo]
Length = 137
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGLDIE-------NESIKSFYSSLVNGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + +I + + IA
Sbjct: 55 FNNLEHIDSLI-RDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSCKFINGILDALLKNME 136
>gi|73662539|ref|YP_301320.1| transcription antitermination protein NusB [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|119390831|sp|Q49XW9|NUSB_STAS1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|72495054|dbj|BAE18375.1| putative antitermination protein [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 128
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A Q L+Q+++ T + ++ ++ E+ ++
Sbjct: 2 SRKESRTQAFQTLFQLEMKNSDLT-----------IEEAISFIKDDNPDLEFEFISWLVT 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV D + +D I L + W+ +RL ILR E++ S P +VII+E V +A
Sbjct: 51 GVKDHEVVLDEKIQPHLKD-WTLARLLKSDRIILRMSTFEMLHS-STPQKVIINEAVELA 108
Query: 135 HDFFYGDEPKFINAVLDKV 153
F D KFIN VL +
Sbjct: 109 KQFSDDDHYKFINGVLSNI 127
>gi|15615070|ref|NP_243373.1| hypothetical protein BH2507 [Bacillus halodurans C-125]
gi|10175127|dbj|BAB06226.1| BH2507 [Bacillus halodurans C-125]
Length = 450
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L QI+ Y + ++ D+ +++G + R
Sbjct: 7 REVALETLVQIEKSQ-----------AYSNLLLNQKIKQANLEPRDIGLLTELVYGTVQR 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D I+S + + +L+ + +LR V +L+ VP II E V IA +
Sbjct: 56 QKTLDYYIASFVAKGKR--KLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGH 113
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 114 KGISGLVNGVLRSMQRQ 130
>gi|224532931|ref|ZP_03673541.1| transcription antitermination factor NusB [Borrelia burgdorferi
WI91-23]
gi|224512130|gb|EEF82521.1| transcription antitermination factor NusB [Borrelia burgdorferi
WI91-23]
Length = 145
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 58 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|118595243|ref|ZP_01552590.1| transcription antitermination protein NusB [Methylophilales
bacterium HTCC2181]
gi|118441021|gb|EAV47648.1| transcription antitermination protein NusB [Methylophilales
bacterium HTCC2181]
Length = 155
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 15/165 (9%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T KK K + R +R ++++Y+ + +I ++ + +
Sbjct: 6 TKTSGKK--KPINNRRKSRELVMKSIYRGIVNQFDINQIKK-----------DIREDPDF 52
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ D + I+ GV + + I + L + L I +IL + + EL V
Sbjct: 53 VRSDESMYLSIVEGVHNNFDSLKEEIKTYLDRSYD--ELSPIELAILFSSLYELKFSLDV 110
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
P V+I+E + +A F D KFIN +L+K ++ ++
Sbjct: 111 PYRVVINEAIEVAKSFGGVDGFKFINGILNKAAQHNRKNELSRLA 155
>gi|116747600|ref|YP_844287.1| sun protein [Syntrophobacter fumaroxidans MPOB]
gi|116696664|gb|ABK15852.1| sun protein [Syntrophobacter fumaroxidans MPOB]
Length = 449
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+ A Q L +D +I D +++GV+
Sbjct: 3 NARVLAFQILLHMDRDASHPDRLIRGML----------GRHERLEERDRALLTELVYGVL 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D I + ++D + +LR + +++ +P ++E V +A
Sbjct: 53 RWQGRLDWHIDQLSRTRP--EKIDPAVRILLRLALYQILMLDRIPDHAAVNEAVNMAKTT 110
Query: 138 FYGDEPKFINAVLDKVSRKE 157
KF+N VL + R+
Sbjct: 111 QPAYLVKFVNGVLREALRRR 130
>gi|325918406|ref|ZP_08180534.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
ATCC 35937]
gi|325535368|gb|EGD07236.1| transcription antitermination factor NusB [Xanthomonas vesicatoria
ATCC 35937]
Length = 156
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I ++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQISGGFAKQVIGQF-----------AHEQAHEVADLAYFESLVEGVLTHRAELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGC 164
++N VLD+ + + SG
Sbjct: 137 YVNGVLDRAAVEWRKVESGA 156
>gi|52785554|ref|YP_091383.1| YloM [Bacillus licheniformis ATCC 14580]
gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
ATCC 14580]
gi|52348056|gb|AAU40690.1| YloM [Bacillus licheniformis ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
ATCC 14580]
Length = 448
Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ R A+ AL ++D Y + D +++G
Sbjct: 2 KNNVREVALDALIKLDQNQ-----------AYSNLLLQSAMKANDLSDKDRGLLTELVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ K +D ++ + + + +LR + ++ +P + E V IA
Sbjct: 51 TLQNKLALDYMLKPFIKKPEKVKDWVIH---LLRMSLYQMEYLEKIPDRAALFEAVEIAK 107
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+ F+N VL V R+
Sbjct: 108 RRGHKGISSFVNGVLRSVQRE 128
>gi|216264330|ref|ZP_03436322.1| transcription antitermination factor NusB [Borrelia burgdorferi
156a]
gi|221217510|ref|ZP_03588981.1| transcription antitermination factor NusB [Borrelia burgdorferi
72a]
gi|223889204|ref|ZP_03623793.1| transcription antitermination factor NusB [Borrelia burgdorferi
64b]
gi|225549846|ref|ZP_03770808.1| transcription antitermination factor NusB [Borrelia burgdorferi
118a]
gi|215980803|gb|EEC21610.1| transcription antitermination factor NusB [Borrelia burgdorferi
156a]
gi|221192788|gb|EEE19004.1| transcription antitermination factor NusB [Borrelia burgdorferi
72a]
gi|223885453|gb|EEF56554.1| transcription antitermination factor NusB [Borrelia burgdorferi
64b]
gi|225369537|gb|EEG98988.1| transcription antitermination factor NusB [Borrelia burgdorferi
118a]
Length = 145
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 58 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFQNFENSKRAIIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|332185633|ref|ZP_08387381.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
gi|332014611|gb|EGI56668.1| transcription antitermination factor NusB [Sphingomonas sp. S17]
Length = 151
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQ D+ ++ E+ +R A E + Y D+++F I+ GV R IDL+I
Sbjct: 23 YQHDMEKTPLAALLHEFHNHRIGATIE---DVEYADADIDFFDDIVKGVHARLGEIDLMI 79
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
L W+ SRLD + +ILRAG ELI VPV +ISEYV +AH F+ E F+N
Sbjct: 80 EGKLASGWTLSRLDRPMKAILRAGTYELIARRDVPVGAVISEYVDVAHAFYEKRESGFVN 139
Query: 148 AVLDKVSR 155
+LD +++
Sbjct: 140 GLLDAIAK 147
>gi|260654155|ref|ZP_05859645.1| transcription antitermination factor NusB [Jonquetella anthropi
E3_33 E1]
gi|260631140|gb|EEX49334.1| transcription antitermination factor NusB [Jonquetella anthropi
E3_33 E1]
Length = 165
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 60/164 (36%), Gaps = 12/164 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCST---------TEIISEYETYRFCA 51
MT ++K ++ S ++ + R AVQAL+ +D E++ +
Sbjct: 1 MTT-ESKGNIS-SQKQHLRRFLAVQALFALDSSADPAGTLRLLADDWELLGFHGDELEID 58
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D D V +D LI+ CL W RLD + +ILR
Sbjct: 59 DETASQLPAISAEDCGAAVQWAERVWSHLDQVDSLIAPCL-RGWRLPRLDGVDRAILRLC 117
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E SV V SE V +A KF+N V+ + R
Sbjct: 118 FFESRVEGSVNDAVAASEAVILAKAMGGEQSAKFVNGVIGSIMR 161
>gi|163816787|ref|ZP_02208150.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
gi|158448044|gb|EDP25039.1| hypothetical protein COPEUT_02977 [Coprococcus eutactus ATCC 27759]
Length = 153
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEI---ISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + ++ + + ++ + + + + D E+
Sbjct: 3 RREIRDKIFKIVFTAEFNTQEEMKEQLELAFDTEMPGDEEDDPMLYASVSEKDKEYITDK 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ K ID IS +E W R+ +ILR GV E++ ++P +V I+E V
Sbjct: 63 VMDILAHKDAIDNTISEI-SEGWKLPRIGKEELAILRLGVYEVVYDETIPEKVAINEAVE 121
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+A + KF+NA+L K+ +KEE +
Sbjct: 122 LAKKYCDVSASKFVNALLAKLVKKEESGNATE 153
>gi|194014930|ref|ZP_03053547.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
gi|194013956|gb|EDW23521.1| ribosomal RNA small subunit methyltransferase B [Bacillus pumilus
ATCC 7061]
Length = 442
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ AL +++ Y + + D +++G +
Sbjct: 2 RELALDALIKLEQNQ-----------AYSNLLLQSVMKDKDLADQDKPLLTELVYGTLQN 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D +++ + ++ + +LR + +++ +P I E V + +
Sbjct: 51 KLALDYMLAPFVK---KPQKVAPWVMQLLRMSLYQMVYLEKIPHRAAIHEAVELTKKRGH 107
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL V R+
Sbjct: 108 KGISSLVNGVLRSVQRE 124
>gi|308069674|ref|YP_003871279.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
gi|305858953|gb|ADM70741.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Paenibacillus
polymyxa E681]
Length = 471
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ G Y ++ D +++G +
Sbjct: 27 AREVALDVLIGVEQEG-----------AYSNLELNRRLQQAGLSASDAGLATELVYGTVA 75
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D ++ + + ++L + S+LR V +L+ VP ++SE V IA
Sbjct: 76 RRNTLDYFLNKFVQKGT--AKLQAWVRSLLRMSVYQLVYLDRVPDHAVVSEAVTIAKRRG 133
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
+ +N VL + R+ + R
Sbjct: 134 HQGISGMVNGVLRSMLREPDKLR 156
>gi|34556732|ref|NP_906547.1| transcription antitermination protein NusB [Wolinella succinogenes
DSM 1740]
gi|39931695|sp|Q7MAE9|NUSB_WOLSU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|34482446|emb|CAE09447.1| TRANSCRIPTION TERMINATION PROTEIN [Wolinella succinogenes]
Length = 135
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 13/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V LY D+ + EL E + E+ +
Sbjct: 1 MATRAQAREAVVSLLYAYDMGNTEIRKFA-----------IELLEEKRIKNRQQEFALEL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G + ID I L E W FSR+ + +ILR G E++ V VII+E V
Sbjct: 50 FDGTIAHLGEIDEEIKKHLKE-WDFSRIGDMERAILRLGTFEIVYS-GVDRAVIINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
++ F + P+F+N VLD +
Sbjct: 108 LSKTFGNDNSPRFVNGVLDAL 128
>gi|282853858|ref|ZP_06263195.1| transcription antitermination factor NusB [Propionibacterium acnes
J139]
gi|282583311|gb|EFB88691.1| transcription antitermination factor NusB [Propionibacterium acnes
J139]
gi|314923552|gb|EFS87383.1| transcription antitermination factor NusB [Propionibacterium acnes
HL001PA1]
gi|314966598|gb|EFT10697.1| transcription antitermination factor NusB [Propionibacterium acnes
HL082PA2]
gi|314981523|gb|EFT25617.1| transcription antitermination factor NusB [Propionibacterium acnes
HL110PA3]
gi|315092187|gb|EFT64163.1| transcription antitermination factor NusB [Propionibacterium acnes
HL110PA4]
gi|315092880|gb|EFT64856.1| transcription antitermination factor NusB [Propionibacterium acnes
HL060PA1]
gi|315103598|gb|EFT75574.1| transcription antitermination factor NusB [Propionibacterium acnes
HL050PA2]
gi|327327421|gb|EGE69197.1| n utilization substance protein B-like protein [Propionibacterium
acnes HL103PA1]
Length = 261
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ L++ D+IG E+++ V+ + + ++
Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLV 83
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + +D +++ CL+E W+ +R+ + + R G E++ + V ISE + +
Sbjct: 84 RGVTATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAV-ISEAIEL 142
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ +F D F+N +L V
Sbjct: 143 SEEFSTDDSAPFLNGLLGAVI 163
>gi|218249233|ref|YP_002374635.1| transcription antitermination factor NusB [Borrelia burgdorferi
ZS7]
gi|226321982|ref|ZP_03797507.1| transcription antitermination factor NusB [Borrelia burgdorferi
Bol26]
gi|218164421|gb|ACK74482.1| transcription antitermination factor NusB [Borrelia burgdorferi
ZS7]
gi|226232572|gb|EEH31326.1| transcription antitermination factor NusB [Borrelia burgdorferi
Bol26]
gi|312148021|gb|ADQ30680.1| transcription antitermination factor NusB [Borrelia burgdorferi
JD1]
Length = 142
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 55 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136
>gi|15895354|ref|NP_348703.1| transcription antitermination protein NusB [Clostridium
acetobutylicum ATCC 824]
gi|22095961|sp|Q97HC8|NUSB_CLOAB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|15025072|gb|AAK80043.1|AE007710_13 Transcription termination factor NusB [Clostridium acetobutylicum
ATCC 824]
gi|325509499|gb|ADZ21135.1| transcription antitermination protein NusB [Clostridium
acetobutylicum EA 2018]
Length = 135
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R A++ L++I I S ++ I Y+ + ++D E+ I+
Sbjct: 2 NRKKSREVAMKLLFEISINKNSISDTIEHYKEN-----------NEIENLDFEYIERILR 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + ++ID I ++KW SR+ I +ILR E+ +P +V +E V +A
Sbjct: 51 GIDENMEYIDSKIEES-SKKWKISRISKINITILRMAAYEIFFEKDIPCKVSANEAVELA 109
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ + F+N V+ + E K
Sbjct: 110 KSYAEENSFSFVNGVIGNLINSSEEK 135
>gi|331002443|ref|ZP_08325961.1| transcription antitermination factor NusB [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330410259|gb|EGG89693.1| transcription antitermination factor NusB [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 146
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEII--SEYETYRF-CADTELDVESVYLHVDLEWFRVI 72
R + R + L +D ++ + +E+ D EL ++ + D+E+ +
Sbjct: 3 RHLLREHCFKILLGLDFYADEEIKVQTDNYFESPSLEDEDDELIHDANFSDGDIEYIKSK 62
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
VMD K ID +IS ++ W R+ + +ILR + E+ +PV V I+E V
Sbjct: 63 AMLVMDNKSEIDKIISEL-SQGWKLERIGRVERNILRLAIAEMKYDDDIPVSVAINEAVE 121
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + + F+NA+L KV
Sbjct: 122 LAKAYGRDESYSFVNAILSKV 142
>gi|167747881|ref|ZP_02420008.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
gi|167652703|gb|EDR96832.1| hypothetical protein ANACAC_02610 [Anaerostipes caccae DSM 14662]
Length = 448
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
R A+ L +ID S I E Y+F D +F + G ++
Sbjct: 5 RELALDVLMKIDKKEELSHIAIGETLEKYQFSE-----------KKDRAFFTRLCQGTLE 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ ID +I ++ ++ S+LR G +++ +P +E V +A
Sbjct: 54 RRLTIDYVIDLYSKT--KVRKMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRG 111
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ F+N VL +SR+++
Sbjct: 112 FSKLSGFVNGVLRTISRQKQE 132
>gi|219685303|ref|ZP_03540122.1| transcription antitermination factor NusB [Borrelia garinii Far04]
gi|219673076|gb|EED30096.1| transcription antitermination factor NusB [Borrelia garinii Far04]
Length = 142
Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIE-------NESIKSFYSSLVNGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ ++ID LI ++ WS R+D + +ILR GV L + +I E + IA
Sbjct: 55 FNNLEYIDNLI-RDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSDKFINGILDALLKNME 136
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 13/137 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV L QI+ Y + +S D+ +++G + R
Sbjct: 6 REVAVDVLLQIEKNQ-----------AYSNLLLNQTINKSKLDRRDIGLLTELVYGTIQR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ + + +L+ + +LR V +L+ +P ++ E V IA +
Sbjct: 55 RDTLDYFLAPFVKKG--IDKLEDWVKVLLRLSVYQLVYLDRIPDRAVVHEAVTIAKKRGH 112
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 113 KGISGMVNGVLRSIGRE 129
>gi|304440279|ref|ZP_07400169.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371328|gb|EFM24944.1| transcription antitermination factor NusB [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 135
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR ++ LYQ+DI + E + Y S ++E+ R I
Sbjct: 2 SRRVARRGLMKLLYQMDINEDYSDEALDFY-----------FENSDLKEDEVEFIREHIS 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G++D+ + ID +I S L E WS R+ I ILR V EL + V I+E V IA
Sbjct: 51 GMIDKFEEIDEIIKSNL-EGWSLERISNIDRQILRIAVYELYFTSTASNIV-INEAVEIA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
++ + PKFIN +L + RK
Sbjct: 109 REYSSNEAPKFINGILGTIFRK 130
>gi|257871148|ref|ZP_05650801.1| sun protein [Enterococcus gallinarum EG2]
gi|257805312|gb|EEV34134.1| sun protein [Enterococcus gallinarum EG2]
Length = 458
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++AL +I+ G Y EL + D +++G + R
Sbjct: 19 RFVALEALVRIERGG-----------AYSNLLLRELMNQGRLNDKDGRLLTEMVYGTISR 67
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++ + ++D + S+LR + +++ VP I++E V IA
Sbjct: 68 QLLLDYYLANFIKNA---KKVDPWVRSLLRLSLYQMLYLDKVPNHAILNEAVEIAKAKGN 124
Query: 140 GDEPKFINAVLDKVSRK 156
KF+N VL + R+
Sbjct: 125 PGIGKFVNGVLRTIQRE 141
>gi|224534018|ref|ZP_03674602.1| transcription antitermination factor NusB [Borrelia burgdorferi
CA-11.2a]
gi|224512854|gb|EEF83221.1| transcription antitermination factor NusB [Borrelia burgdorferi
CA-11.2a]
Length = 145
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ ++ G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKDLDIE-------NESIKSFYSSLVIGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + II E + IA
Sbjct: 58 FNNLEHIDSLI-RDISLNWSLERMDKVDLAILRMGVYSLKFENFENSKRAIIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSYKFINGILDALLKNME 139
>gi|315108679|gb|EFT80655.1| transcription antitermination factor NusB [Propionibacterium acnes
HL030PA2]
Length = 261
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ L++ D+IG E+++ V+ + + ++
Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLV 83
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + +D +++ CL+E W+ +R+ + + R GV E++ + V ISE + +
Sbjct: 84 RGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGVFEILHTDTPNPAV-ISEAIEL 142
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ +F D F+N +L V
Sbjct: 143 SEEFSTDDSAPFLNGLLGAVI 163
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL E + + + Y T + + D +++
Sbjct: 2 KKINVRELALEAL-----------EKLEQNQAYSNLLLTSVIKTNTLSDQDRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFIRKPNKVKSW---VIQLLRLSAYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N +L + R+
Sbjct: 108 KKRGHKGIASFVNGILRSLQRE 129
>gi|224534942|ref|ZP_03675511.1| transcription antitermination factor NusB [Borrelia spielmanii
A14S]
gi|224513882|gb|EEF84207.1| transcription antitermination factor NusB [Borrelia spielmanii
A14S]
Length = 142
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 2 HEVRVLAFQKIYSIDINQSAMDDIFDIFNIEDKGFDIE-------NESIKSFYSSLVNGT 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ +HID LI ++ WS R+D + +ILR GV L + +I + + IA
Sbjct: 55 FNNLEHIDSLI-RNISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRAVIDDAILIAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 114 KYGSKNSYKFINGILDALLKNME 136
>gi|21230173|ref|NP_636090.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66769837|ref|YP_244599.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. campestris str. 8004]
gi|188993052|ref|YP_001905062.1| transcription antitermination protein NusB [Xanthomonas campestris
pv. campestris str. B100]
gi|24638071|sp|Q8PCM6|NUSB_XANCP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81304209|sp|Q4UQU4|NUSB_XANC8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229620372|sp|B0RVD1|NUSB_XANCB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|21111708|gb|AAM40014.1| transcription termination factor NusB [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575169|gb|AAY50579.1| transcription termination factor NusB [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734812|emb|CAP53022.1| antitermination factor, NusB family [Xanthomonas campestris pv.
campestris]
Length = 159
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 13/143 (9%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
QA+Y I G ++I+++ E + DL +F ++ GV+ + +D
Sbjct: 30 QAVYAWQIAGGFAKQVIAQF-----------AHEQAHEVADLAYFESLVEGVLSNRSELD 78
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
++ L +D I ++LR EL+ VP V+I+E + A F
Sbjct: 79 TALTPYLDRG--VEEVDAIERAVLRLAAYELLYRQDVPYRVVINEAIETAKRFGSEHGHT 136
Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167
++N VLD+ + + SG A
Sbjct: 137 YVNGVLDRAAVEWRKMESGASGA 159
>gi|219684900|ref|ZP_03539842.1| transcription antitermination factor NusB [Borrelia garinii PBr]
gi|219671845|gb|EED28900.1| transcription antitermination factor NusB [Borrelia garinii PBr]
Length = 145
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A Q +Y IDI + +I + D E ++ +++G
Sbjct: 5 HEVRVLAFQKIYSIDINQSAMDDIFDIFTIEDKGLDIE-------NESIKSFYSSLVNGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP-VEVIISEYVCIAH 135
+ ++ID LI ++ WS R+D + +ILR GV L + +I E + IA
Sbjct: 58 FNNLEYIDNLI-RDISWNWSLDRMDKVDLAILRMGVYSLKFQNFENSKRALIDEAILIAK 116
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ + KFIN +LD + + E
Sbjct: 117 KYGSKNSDKFINGILDALLKNME 139
>gi|327330421|gb|EGE72170.1| n utilization substance protein B-like protein [Propionibacterium
acnes HL097PA1]
Length = 261
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ L++ D+IG E+++ V+ + + ++
Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLV 83
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + +D +++ CL+E W+ +R+ + + R G E++ + V ISE + +
Sbjct: 84 RGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAV-ISEAIEL 142
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ +F D F+N +L V
Sbjct: 143 SEEFSTDDSAPFLNGLLGAVI 163
>gi|315655389|ref|ZP_07908289.1| transcription antitermination protein NusB [Mobiluncus curtisii
ATCC 51333]
gi|315490329|gb|EFU79954.1| transcription antitermination protein NusB [Mobiluncus curtisii
ATCC 51333]
Length = 191
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R+ AV LY+ + G T E I R E+ + I+
Sbjct: 7 RRTRERVRAVDVLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILE 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + + ID + + ++ W R+ + +I+R E++ V V I+ + IA
Sbjct: 60 GVAEHLERIDAAL-ATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIA 118
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ + PKFIN +L +
Sbjct: 119 EERSTDESPKFINGLLGAI 137
>gi|50842668|ref|YP_055895.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
gi|289425085|ref|ZP_06426862.1| transcription antitermination factor NusB [Propionibacterium acnes
SK187]
gi|289428561|ref|ZP_06430245.1| transcription antitermination factor NusB [Propionibacterium acnes
J165]
gi|295130747|ref|YP_003581410.1| transcription antitermination factor NusB [Propionibacterium acnes
SK137]
gi|81611678|sp|Q6A8H8|NUSB_PROAC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|50840270|gb|AAT82937.1| putative NusB-family protein [Propionibacterium acnes KPA171202]
gi|289154063|gb|EFD02751.1| transcription antitermination factor NusB [Propionibacterium acnes
SK187]
gi|289158255|gb|EFD06474.1| transcription antitermination factor NusB [Propionibacterium acnes
J165]
gi|291375576|gb|ADD99430.1| transcription antitermination factor NusB [Propionibacterium acnes
SK137]
gi|313764289|gb|EFS35653.1| transcription antitermination factor NusB [Propionibacterium acnes
HL013PA1]
gi|313771992|gb|EFS37958.1| transcription antitermination factor NusB [Propionibacterium acnes
HL074PA1]
gi|313791976|gb|EFS40077.1| transcription antitermination factor NusB [Propionibacterium acnes
HL110PA1]
gi|313802074|gb|EFS43308.1| transcription antitermination factor NusB [Propionibacterium acnes
HL110PA2]
gi|313807685|gb|EFS46172.1| transcription antitermination factor NusB [Propionibacterium acnes
HL087PA2]
gi|313810192|gb|EFS47913.1| transcription antitermination factor NusB [Propionibacterium acnes
HL083PA1]
gi|313812780|gb|EFS50494.1| transcription antitermination factor NusB [Propionibacterium acnes
HL025PA1]
gi|313816197|gb|EFS53911.1| transcription antitermination factor NusB [Propionibacterium acnes
HL059PA1]
gi|313818722|gb|EFS56436.1| transcription antitermination factor NusB [Propionibacterium acnes
HL046PA2]
gi|313820492|gb|EFS58206.1| transcription antitermination factor NusB [Propionibacterium acnes
HL036PA1]
gi|313822702|gb|EFS60416.1| transcription antitermination factor NusB [Propionibacterium acnes
HL036PA2]
gi|313825364|gb|EFS63078.1| transcription antitermination factor NusB [Propionibacterium acnes
HL063PA1]
gi|313827660|gb|EFS65374.1| transcription antitermination factor NusB [Propionibacterium acnes
HL063PA2]
gi|313830523|gb|EFS68237.1| transcription antitermination factor NusB [Propionibacterium acnes
HL007PA1]
gi|313833559|gb|EFS71273.1| transcription antitermination factor NusB [Propionibacterium acnes
HL056PA1]
gi|313838895|gb|EFS76609.1| transcription antitermination factor NusB [Propionibacterium acnes
HL086PA1]
gi|314915279|gb|EFS79110.1| transcription antitermination factor NusB [Propionibacterium acnes
HL005PA4]
gi|314918171|gb|EFS82002.1| transcription antitermination factor NusB [Propionibacterium acnes
HL050PA1]
gi|314920247|gb|EFS84078.1| transcription antitermination factor NusB [Propionibacterium acnes
HL050PA3]
gi|314925034|gb|EFS88865.1| transcription antitermination factor NusB [Propionibacterium acnes
HL036PA3]
gi|314931770|gb|EFS95601.1| transcription antitermination factor NusB [Propionibacterium acnes
HL067PA1]
gi|314955572|gb|EFS99973.1| transcription antitermination factor NusB [Propionibacterium acnes
HL027PA1]
gi|314958067|gb|EFT02170.1| transcription antitermination factor NusB [Propionibacterium acnes
HL002PA1]
gi|314960362|gb|EFT04464.1| transcription antitermination factor NusB [Propionibacterium acnes
HL002PA2]
gi|314962632|gb|EFT06732.1| transcription antitermination factor NusB [Propionibacterium acnes
HL082PA1]
gi|314967503|gb|EFT11602.1| transcription antitermination factor NusB [Propionibacterium acnes
HL037PA1]
gi|314973523|gb|EFT17619.1| transcription antitermination factor NusB [Propionibacterium acnes
HL053PA1]
gi|314976203|gb|EFT20298.1| transcription antitermination factor NusB [Propionibacterium acnes
HL045PA1]
gi|314978636|gb|EFT22730.1| transcription antitermination factor NusB [Propionibacterium acnes
HL072PA2]
gi|314983775|gb|EFT27867.1| transcription antitermination factor NusB [Propionibacterium acnes
HL005PA1]
gi|314987956|gb|EFT32047.1| transcription antitermination factor NusB [Propionibacterium acnes
HL005PA2]
gi|314989766|gb|EFT33857.1| transcription antitermination factor NusB [Propionibacterium acnes
HL005PA3]
gi|315077848|gb|EFT49899.1| transcription antitermination factor NusB [Propionibacterium acnes
HL053PA2]
gi|315080473|gb|EFT52449.1| transcription antitermination factor NusB [Propionibacterium acnes
HL078PA1]
gi|315084144|gb|EFT56120.1| transcription antitermination factor NusB [Propionibacterium acnes
HL027PA2]
gi|315085487|gb|EFT57463.1| transcription antitermination factor NusB [Propionibacterium acnes
HL002PA3]
gi|315088456|gb|EFT60432.1| transcription antitermination factor NusB [Propionibacterium acnes
HL072PA1]
gi|315096070|gb|EFT68046.1| transcription antitermination factor NusB [Propionibacterium acnes
HL038PA1]
gi|315098699|gb|EFT70675.1| transcription antitermination factor NusB [Propionibacterium acnes
HL059PA2]
gi|315101532|gb|EFT73508.1| transcription antitermination factor NusB [Propionibacterium acnes
HL046PA1]
gi|315105759|gb|EFT77735.1| transcription antitermination factor NusB [Propionibacterium acnes
HL030PA1]
gi|327326350|gb|EGE68140.1| n utilization substance protein B-like protein [Propionibacterium
acnes HL096PA2]
gi|327331775|gb|EGE73512.1| n utilization substance protein B-like protein [Propionibacterium
acnes HL096PA3]
gi|327443552|gb|EGE90206.1| transcription antitermination factor NusB [Propionibacterium acnes
HL013PA2]
gi|327445756|gb|EGE92410.1| transcription antitermination factor NusB [Propionibacterium acnes
HL043PA2]
gi|327448261|gb|EGE94915.1| transcription antitermination factor NusB [Propionibacterium acnes
HL043PA1]
gi|327450617|gb|EGE97271.1| transcription antitermination factor NusB [Propionibacterium acnes
HL087PA3]
gi|327453305|gb|EGE99959.1| transcription antitermination factor NusB [Propionibacterium acnes
HL092PA1]
gi|327454045|gb|EGF00700.1| transcription antitermination factor NusB [Propionibacterium acnes
HL083PA2]
gi|328753303|gb|EGF66919.1| transcription antitermination factor NusB [Propionibacterium acnes
HL025PA2]
gi|328754035|gb|EGF67651.1| transcription antitermination factor NusB [Propionibacterium acnes
HL087PA1]
gi|328754763|gb|EGF68379.1| transcription antitermination factor NusB [Propionibacterium acnes
HL020PA1]
gi|328760688|gb|EGF74254.1| n utilization substance protein B-like protein [Propionibacterium
acnes HL099PA1]
gi|332675591|gb|AEE72407.1| N utilization substance protein B [Propionibacterium acnes 266]
Length = 261
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ L++ D+IG E+++ V+ + + ++
Sbjct: 37 STRSKARKQALDILFEADLIGTDPLEVLAAR-------------PGVFTNPVRPFAADLV 83
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV + +D +++ CL+E W+ +R+ + + R G E++ + V ISE + +
Sbjct: 84 RGVAATQVGLDSVLTDCLSEGWTLARMPRVDRILARLGAFEILHTDTPNPAV-ISEAIEL 142
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ +F D F+N +L V
Sbjct: 143 SEEFSTDDSAPFLNGLLGAVI 163
>gi|325265401|ref|ZP_08132125.1| transcription antitermination factor NusB [Clostridium sp. D5]
gi|324029402|gb|EGB90693.1| transcription antitermination factor NusB [Clostridium sp. D5]
Length = 132
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 10/138 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L+QI+ E + E+ F + E D E+
Sbjct: 3 RRELREHIFKMLFQIEFNE---MEDMPEHLALYFENLSSATEE------DKEYITKKFEA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + ID +++ T W +R+ + +ILR E+ VP V I+E V +A
Sbjct: 54 IVKKVPEIDAILNEK-TTGWKTTRMSKVDLTILRLATYEMKWDEDVPEGVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKV 153
F + P F+N VL K+
Sbjct: 113 RFSGEEGPSFVNGVLAKL 130
>gi|160933495|ref|ZP_02080883.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
gi|156867372|gb|EDO60744.1| hypothetical protein CLOLEP_02341 [Clostridium leptum DSM 753]
Length = 446
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
ARL A++AL +++ + ++ S D + + +GV
Sbjct: 5 KNARLTALKALLRVEEGKGYSNLVLDHGLA-----------ASGLDGRDAAFASALFYGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++R+ +D IS S++ + ILR G +L+ VP ++E V +
Sbjct: 54 LERRITLDYQISRYSK--MPLSQMAAPVREILRLGFYQLLYMDKVPQSAAVNESVKLTRA 111
Query: 137 FFYGDEPKFINAVLDKVSRK 156
F+N +L R
Sbjct: 112 VKKDKASGFVNGILRSFIRD 131
>gi|108799351|ref|YP_639548.1| Fmu (Sun) [Mycobacterium sp. MCS]
gi|119868467|ref|YP_938419.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. KMS]
gi|108769770|gb|ABG08492.1| Fmu (Sun) [Mycobacterium sp. MCS]
gi|119694556|gb|ABL91629.1| Fmu (Sun) domain protein [Mycobacterium sp. KMS]
Length = 455
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 22/173 (12%)
Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT + + R AR A L + + R
Sbjct: 1 MT----RPPHRPQRNRRKPLDPARRVAFDVLRAVSERDAYANLALPALLNER-------- 48
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
D + + +G + +D +I + R+D +L +LR G +L+
Sbjct: 49 ---GLDGRDAAFATELTYGTCRSRGLLDAVIEA--AAGRPVDRIDPVLLDLLRLGTYQLL 103
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
P +S V A F F+N VL K++ ++E ++
Sbjct: 104 RTRVEP-HAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155
>gi|126435009|ref|YP_001070700.1| Fmu (Sun) domain-containing protein [Mycobacterium sp. JLS]
gi|126234809|gb|ABN98209.1| Fmu (Sun) domain protein [Mycobacterium sp. JLS]
Length = 455
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 22/173 (12%)
Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT + + R AR A L + + R
Sbjct: 1 MT----RPPHRPQRNRRKPLDPARRVAFDVLRAVSERDAYANLALPALLNER-------- 48
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
D + + +G + +D +I + R+D +L +LR G +L+
Sbjct: 49 ---GLDGRDAAFATELTYGTCRSRGLLDAVIEA--AAGRPVDRIDPVLLDLLRLGTYQLL 103
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
P +S V A F F+N VL K++ ++E ++
Sbjct: 104 RTRVEP-HAAVSTTVEQAGIEFDTARAGFVNGVLRKIAGRDEQSWVAELAPPA 155
>gi|319946361|ref|ZP_08020599.1| N utilization substance protein B [Streptococcus australis ATCC
700641]
gi|319747514|gb|EFV99769.1| N utilization substance protein B [Streptococcus australis ATCC
700641]
Length = 142
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 9/145 (6%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + T E+ + ++
Sbjct: 7 ESRRDLRERAFQALMSLEYEGDVVEACRFAF--------THDKEETDQEVEIPAFLLNLV 58
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV K +D I+ L W+ RL ++ +ILR GV E+ P V ++E + +
Sbjct: 59 SGVRQSKDELDKQIAQHLKTGWTVERLTLVEKNILRLGVFEITSFD-TPQLVAVNEAIEL 117
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A F +F+N VL + + E
Sbjct: 118 AKTFSDEKSARFVNGVLSQFVTEAE 142
>gi|225025922|ref|ZP_03715114.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
gi|224956708|gb|EEG37917.1| hypothetical protein EUBHAL_00158 [Eubacterium hallii DSM 3353]
Length = 133
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+K+S R R L++++ E I Y R + + D +
Sbjct: 1 MKMS--RRKVRETIFLLLFRVEFNTQEELQEQIKWYFEERPDIEGK----------DQIY 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I ++ R ID I S E W RL +ILR V E+ ++P V I+
Sbjct: 49 IETKIGSILKRLPEIDEQIHSIC-EGWRLERLGKPELAILRLAVYEITNDANIPTGVAIN 107
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A + + P+F+N VL K++
Sbjct: 108 EAVELAKIYCSEEAPRFVNGVLAKLA 133
>gi|238924571|ref|YP_002938087.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
gi|259514834|sp|C4ZCZ0|NUSB_EUBR3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238876246|gb|ACR75953.1| NusB antitermination factor [Eubacterium rectale ATCC 33656]
Length = 131
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++++ S + D + + ++
Sbjct: 3 RSKIRENVFKMLFRVEFHDKS---------ELAEQMELLNDELTNPTDEERQYIDEKCSA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ +D LI + W +R+ + +I+R V E+ +P +V I+E V +A
Sbjct: 54 IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + F+N VL K +
Sbjct: 113 KYGADESGAFVNGVLAKFA 131
>gi|171740948|ref|ZP_02916755.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
27678]
gi|306823314|ref|ZP_07456689.1| transcription antitermination factor NusB [Bifidobacterium dentium
ATCC 27679]
gi|309802656|ref|ZP_07696760.1| transcription antitermination factor NusB [Bifidobacterium dentium
JCVIHMP022]
gi|171276562|gb|EDT44223.1| hypothetical protein BIFDEN_00009 [Bifidobacterium dentium ATCC
27678]
gi|304553021|gb|EFM40933.1| transcription antitermination factor NusB [Bifidobacterium dentium
ATCC 27679]
gi|308220720|gb|EFO77028.1| transcription antitermination factor NusB [Bifidobacterium dentium
JCVIHMP022]
Length = 147
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E + ++ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQDI-----------LSLLAERIEQPGAQTPLPDYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ID ++ + W R+ ++ +ILR V E++ VP V I E + +A
Sbjct: 52 VAENLYRIDSVLDEH-STGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKVS 154
D P FI+ +L VS
Sbjct: 111 TLCDDDSPAFIHGLLSAVS 129
>gi|323487019|ref|ZP_08092331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
symbiosum WAL-14163]
gi|323399667|gb|EGA92053.1| ribosomal RNA small subunit methyltransferase B [Clostridium
symbiosum WAL-14163]
Length = 444
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G + I+S+ T D + + ++ G ++
Sbjct: 9 REIILDILLEVLEKGKYSHVILSQALTKY----------QYLEKQDRSFIKRVVDGTVEY 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++S +++ ++ +ILR ++ VP +E V +A +
Sbjct: 59 RIQLDYILNSYSKV--KVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGF 116
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL +SR ++
Sbjct: 117 SGLKGFVNGVLRSISRGKD 135
>gi|291525244|emb|CBK90831.1| transcription antitermination factor NusB [Eubacterium rectale DSM
17629]
gi|291529297|emb|CBK94883.1| transcription antitermination factor NusB [Eubacterium rectale
M104/1]
Length = 131
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++++ S + D + + ++
Sbjct: 3 RSKIRENVFKMLFRVEFHDKS---------ELAEQMELLNDELTNPTDEEKQYIDEKCSA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ +D LI + W +R+ + +I+R V E+ +P +V I+E V +A
Sbjct: 54 IIEHMAELDALIDEK-STGWKTNRMAKVDLAIIRLAVYEIKFEDDIPTKVSINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + F+N VL K +
Sbjct: 113 KYGADESGAFVNGVLAKFA 131
>gi|118602517|ref|YP_903732.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567456|gb|ABL02261.1| NusB antitermination factor [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 140
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K S +R R VQALYQ + G +I ++ +
Sbjct: 1 MTFKTSKQRS--RERVVQALYQYLVSGGEILQIEQQFLN------------QKQGKISKA 46
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+F + ++ K +D +I+ + + +L + +IL G EL VP +++I
Sbjct: 47 FFSNLFINILKNKSLLDEIIAPTINRET--EQLGAVEHAILYLGAFELKFSPGVPYKIVI 104
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+E + +A + K IN LDK+++ + +
Sbjct: 105 NESLELAKLYGAEGAHKLINVSLDKLAQTLQPR 137
>gi|262202262|ref|YP_003273470.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
43247]
gi|262085609|gb|ACY21577.1| transcription antitermination factor NusB [Gordonia bronchialis DSM
43247]
Length = 163
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K R AR AV L++ + S ++++E EL + ++
Sbjct: 1 MKQPGTRHKARRRAVDILFEAEAKQVSPAQLVAER--------RELVRSDESVGAIHDYT 52
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+I G+ D ++ ID +ISS L +W+ RL + +ILR EL V VI+ E
Sbjct: 53 ARVIEGLADDQEQIDSVISSHL-REWTLPRLPAVDRAILRLATWELFNSVDVDTVVIVDE 111
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
V +A + D P F+N VL K++
Sbjct: 112 AVELAKELSTDDSPAFVNGVLAKIA 136
>gi|320334545|ref|YP_004171256.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
gi|319755834|gb|ADV67591.1| NusB antitermination factor [Deinococcus maricopensis DSM 21211]
Length = 169
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 6/160 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +K S+ R AR A + L++ + E ++ R D
Sbjct: 1 MTR-RREKASAPSNSRRAAREFAFRVLFESERGQVPLQEALN---RARLNMAHGDDTYPE 56
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+++ R ++ G ++ + + W+F ++ ++LR E++
Sbjct: 57 LGDEAVDFARDLL-GAQTARRAEVDSLLTRTIRGWTFEQMAQTDLNVLRLATAEMLRGED 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ I +V +A F D +F+N VL VSR E +
Sbjct: 116 PHPPI-IESFVRVARKFGGEDSGRFVNGVLSGVSRTIEEQ 154
>gi|83589751|ref|YP_429760.1| sun protein [Moorella thermoacetica ATCC 39073]
gi|83572665|gb|ABC19217.1| sun protein [Moorella thermoacetica ATCC 39073]
Length = 457
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 52/141 (36%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+Q +Y++ G Y A E+ + + + + +
Sbjct: 10 AREAALQVIYRVTEEG-----------AYAGLALDEVLKSAGLDGRERALATELAYSAIK 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D + + +L + +LR G +L+ +P I E V +A +
Sbjct: 59 AWGTLDWALGLF--LRQPLEKLPPWIRCVLRLGATQLLYVPRIPPRAAIYETVELAKKYG 116
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ +N VL + R+++
Sbjct: 117 HRGTTGLVNGVLRHLDRQKDA 137
>gi|45656304|ref|YP_000390.1| transcription antitermination protein NusB [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|45599538|gb|AAS69027.1| transcription termination factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 126
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
ALYQ+++ E++ + + ++ I++GV+ ++ ID
Sbjct: 2 ALYQLELTQPPLKEVLKFKW-----------YDKKTEPEERDFAVSIVNGVVKNQEQIDT 50
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
LI ++ W FSR+ ++ +ILR + L+ VP V I E V + +F + +F
Sbjct: 51 LIKKY-SKNWDFSRISIVNKAILRLSIYALLYTWEVPKNVTIDEAVELTKEFESEESARF 109
Query: 146 INAVLDKVSRKE 157
+N VLD + + E
Sbjct: 110 VNGVLDAILKNE 121
>gi|291542594|emb|CBL15704.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
bromii L2-63]
Length = 446
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
I Y A E+ VD + +++GV++R+ +D +I S ++
Sbjct: 15 IENEGAYSNIALNNAIKENRLSGVDSSFVSALVYGVLERRITLDYIIRSYSKI--PLRKI 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +ILR G+L+L+ VP ++E V +A FIN +L ++R E+
Sbjct: 73 ETKTKNILRLGILQLLFMDKVPDSAAVNESVNLAKKHKLQKSSGFINGILRNITRAED 130
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ AL ++D Y + D +++G +
Sbjct: 2 REVALDALIKLDQNQ-----------AYSNLLLQSAMKANDLSDKDRGLLTELVYGTLQN 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D ++ + + + +LR + ++ +P + E V IA +
Sbjct: 51 KLALDYMLKPFIKKPEKVKDWVIH---LLRMSLYQMEYLEKIPDRAALFEAVEIAKRRGH 107
Query: 140 GDEPKFINAVLDKVSRK 156
F+N VL V R+
Sbjct: 108 KGISSFVNGVLRSVQRE 124
>gi|291545446|emb|CBL18554.1| transcription antitermination factor NusB [Ruminococcus sp. SR1/5]
Length = 158
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 10/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R + ++ + S E+ + Y D E+ +
Sbjct: 2 RRREQREHVFKLMFMTEFN--SEEEMTEQLSLYFEGL-------GELSEQDQEYMKKKYA 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V + + ID ++S + W R+ + + LR V E+ VP V I+E V +A
Sbjct: 53 HVKEHLEEIDAQLNSA-SRGWKTKRMSRVDLAALRLAVYEMEYDADVPTGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS 154
F F+N VL K++
Sbjct: 112 KRFGGDASGSFVNGVLGKIA 131
>gi|288574984|ref|ZP_06393341.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570725|gb|EFC92282.1| NusB antitermination factor [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 143
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A+Q LY +D+ + + F + +++ R ++
Sbjct: 9 KKHRAREVALQLLYSMDVTKK--HDAEKALNDFSFEDEIDVETG----------VRALVL 56
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GVMD ID LI+ W R+ + + +R V E + VPV V ISE V +
Sbjct: 57 GVMDHLGEIDNLIN-VNVVGWRGDRMVAVDRAAIRLAVYEGLIARVVPVPVAISEAVELV 115
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F + +F+N L ++ R
Sbjct: 116 KVFGTDESGRFVNGALARIVR 136
>gi|226323208|ref|ZP_03798726.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
gi|225208398|gb|EEG90752.1| hypothetical protein COPCOM_00980 [Coprococcus comes ATCC 27758]
Length = 130
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R + L+ I E I Y A E + R +
Sbjct: 2 RRSKVREHIFKMLFSIGFDAADADEQIELYLEQVEEASEEE----------RGYMRKKVK 51
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ ID +I+ T W R++ + S+LR V E+ VPV+V I+E V +A
Sbjct: 52 DIAAHEEEIDAMINEH-TTGWKTGRMNKVDLSVLRLAVYEMKWDDEVPVKVAINEAVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+F + P F+N VL K++
Sbjct: 111 KNFSGDEGPAFVNGVLGKLA 130
>gi|325682729|ref|ZP_08162245.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
gi|324977079|gb|EGC14030.1| N utilization substance protein B [Lactobacillus reuteri MM4-1A]
Length = 132
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q L+ + S +I + YE + ++ + +++GV +
Sbjct: 3 REEAFQVLFALQ--SDSEADIQTVYEAIPHHDEKQIPP----------YLLTLVNGVREH 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D I+ L W+ +RL ILR + E+ +VP V I+E + + F
Sbjct: 51 QDQLDEQINDLLASGWTINRLAKPDLVILRLALFEIQYAENVPTVVAINEALELTKTFSS 110
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
KFIN L K ++
Sbjct: 111 DKSRKFINGALGKFEKQVNENN 132
>gi|119962399|ref|YP_948012.1| transcription antitermination factor NusB [Arthrobacter aurescens
TC1]
gi|166215660|sp|A1R700|NUSB_ARTAT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|119949258|gb|ABM08169.1| transcription antitermination factor NusB [Arthrobacter aurescens
TC1]
Length = 136
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A++ L++ + S + ++ + I
Sbjct: 1 MSARGKARSRALEVLFEAEQRSVSAFDAMTARREKTDLVIN-------------PYTVEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ + ID + + W+ R+ + ILR G EL+ VP V +SE V
Sbjct: 48 VEGVVSMQATIDEFL-QTYAQGWTLERMPSVDRIILRIGAWELLYNDEVPDGVAVSEAVA 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + P FIN +L ++ +
Sbjct: 107 LAKTMSTDESPAFINGLLGRLQK 129
>gi|239627505|ref|ZP_04670536.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517651|gb|EEQ57517.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 149
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES--------VYLHVDLE 67
R R + L+ D + + ++ + + D E D E
Sbjct: 3 RRELREHCFKMLFSADFYPTQEEAVAQLDQYFQSPEEYDTDPEGVLQVLHKVELKSEDSE 62
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + ++D+ ID ++ W R+ + +ILR + E++ ++P +V I
Sbjct: 63 YLQARTVNIIDKIPEIDAKLNEV-AAGWKTKRMGKVELTILRLALFEMLYDENIPEKVSI 121
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVS 154
+E V +A F D P F+N +L +
Sbjct: 122 NEAVELAKKFGGNDSPAFVNGILARFI 148
>gi|148244614|ref|YP_001219308.1| N utilization substance protein B [Candidatus Vesicomyosocius
okutanii HA]
gi|146326441|dbj|BAF61584.1| N utilization substance protein B [Candidatus Vesicomyosocius
okutanii HA]
Length = 141
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R +QALYQ + G +I ++ + +F
Sbjct: 1 MSFKTPKQRTRERVIQALYQYLVSGGEVFQIEQQFLN------------QKQGKISKVFF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ +++ + +D LI+S ++ L + SIL G EL VP +V+I+E
Sbjct: 49 SDLFINILENRFVLDELITSTISRGT--EELGSVEHSILYLGTFELKFNSEVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +A + K IN LDK++R
Sbjct: 107 SLALAKLYGAEGSYKLINVSLDKLARILRKIE 138
>gi|317472520|ref|ZP_07931840.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
gi|316899997|gb|EFV21991.1| ribosomal RNA small subunit methyltransferase B [Anaerostipes sp.
3_2_56FAA]
Length = 448
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
R A+ L +ID S I E Y+F D +F + G ++
Sbjct: 5 RELALDVLMKIDKKEELSHIAIGETLEKYQFSE-----------KKDRAFFTRLCQGTLE 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ ID +I K ++ ++ S+LR G +++ +P +E V +A
Sbjct: 54 RRLTIDYVIDLYSKTKER--KMKPLVRSLLRMGACQILFMDHIPDSAACNECVKLAKKRG 111
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ F+N VL +SR+++
Sbjct: 112 FSKLSGFVNGVLRTISRQKQE 132
>gi|306820223|ref|ZP_07453865.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551720|gb|EFM39669.1| transcription antitermination factor NusB [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 212
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 53/202 (26%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC------------------------- 35
M + +NKK+ +S R R +Q LYQ+DI
Sbjct: 1 MNVDENKKNPNMSLSRKRQRQNVMQMLYQMDIQDNFTKSATINIDKKLKDEKYEISLDNC 60
Query: 36 ----------------STTEIISEYETYRFCADTEL-----------DVESVYLHVDLEW 68
S +I +E F +L E++ D+ +
Sbjct: 61 NNIENIEHVKKLIADFSGEKIPENFELGDFIEQDDLITYEVTDTYSYSQENLKNFTDIGY 120
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ I +D K ID IS L+EKW+ RL I +++R + E+ +P +V I+
Sbjct: 121 IKLFISSFLDNKDLIDSEISQVLSEKWTVKRLSKIDLALIRTAITEIKYLD-IPYKVAIN 179
Query: 129 EYVCIAHDFFYGDEPKFINAVL 150
E + +A + FIN +L
Sbjct: 180 EALELAKKYSDEKSSSFINGIL 201
>gi|289450308|ref|YP_003475512.1| transcription antitermination factor NusB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289184855|gb|ADC91280.1| transcription antitermination factor NusB [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 151
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A + LYQI + + E + D+ + ++
Sbjct: 2 KRREAREQAFKFLYQIQVQTDDIPAQREYFLR-------SCRDEFGFEDADISYITGVVD 54
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ D IS+CL + W+ RL + +ILR + E+ V +I +E V +A
Sbjct: 55 GVIKETAEFDRQISTCLKK-WTVDRLPCVDLAILRLALYEIKY-EHVAFSIIANEAVLLA 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ + +IN +L K+ KE+ +
Sbjct: 113 KKYSTEESRSYINGILGKLMPKEDEQ 138
>gi|306828961|ref|ZP_07462153.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
6249]
gi|304429139|gb|EFM32227.1| transcription antitermination factor NusB [Streptococcus mitis ATCC
6249]
Length = 140
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDTDVQLPAFLTELV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLGQFVTEEQ 140
>gi|270293308|ref|ZP_06199517.1| N utilization substance protein B [Streptococcus sp. M143]
gi|270278157|gb|EFA24005.1| N utilization substance protein B [Streptococcus sp. M143]
Length = 146
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + L R R A QAL ++ G T+
Sbjct: 1 MTRTSSMTSP-LLESRRELRKCAFQALMSLEF-GTDVETACRFAYTH---------DRED 49
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+
Sbjct: 50 TDVQLPAFLTELVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD- 108
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P V ++E + +A DF +FIN +L + +E+
Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146
>gi|269792648|ref|YP_003317552.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100283|gb|ACZ19270.1| NusB antitermination factor [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 148
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 14/146 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R AR A+Q Y +D+ E++ ++ +
Sbjct: 7 KKRRRARELALQLGYLMDMRQELGINEVLGSL------------PLDEEDPEVRDYAVAL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G+ +Q + I W R+ + +R +LE VP V ISE V
Sbjct: 55 TSGLYRERQRL-EGILRERLVGWRPERMVAVDRVAIRLAILEGYLERLVPFPVAISEAVE 113
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A F D +F+N VL ++ + E
Sbjct: 114 LAKLFGTEDSGRFVNGVLGRIFKDLE 139
>gi|302389593|ref|YP_003825414.1| sun protein [Thermosediminibacter oceani DSM 16646]
gi|302200221|gb|ADL07791.1| sun protein [Thermosediminibacter oceani DSM 16646]
Length = 450
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 16/147 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + R AV+ L +++ S + D
Sbjct: 1 MKSVKLKPRELAVRILTEVERGSYSNLSLNRHLTA-------------EISREDRALITE 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + +D ++S + ++ I+ + LR G+ +++ +P ++E V
Sbjct: 48 LVYGVIKHRIRLDYVLSKFSKIG--LNDINPIILNCLRVGLYQILFLDKIPDYAAVNESV 105
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
IA + F+N VL V R ++
Sbjct: 106 NIAKLYS-KKAAGFVNGVLRNVIRSKD 131
>gi|217967431|ref|YP_002352937.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
gi|254772636|sp|B8E246|NUSB_DICTD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|217336530|gb|ACK42323.1| NusB antitermination factor [Dictyoglomus turgidum DSM 6724]
Length = 144
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 19/150 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R ++ L+Q D+ EI ++ + +
Sbjct: 1 MSKERTRCREKVLEFLFQKDLGQ----EIEVDFSDFSPQGQV--------------FAYK 42
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + K D +IS ++ W R+ I +ILR + E+ +P V ++E V
Sbjct: 43 LYDGALYYKDLADEIISKF-SKNWKLERIGTIEKNILRMAIAEMFTFSDIPQGVTVNEAV 101
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + + +FIN +L + R + +
Sbjct: 102 ELAKKYVSPEAGRFINGILRNIVRNWDEVK 131
>gi|85373345|ref|YP_457407.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
gi|84786428|gb|ABC62610.1| transcription termination factor [Erythrobacter litoralis HTCC2594]
Length = 125
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ ++ E+ +R + E VD +F I+ GV R ID L+++ L
Sbjct: 1 MEKTPLARLLDEFHQHRLGREIEDGEHYADAEVD--FFDDIVSGVDARSDEIDELVTAKL 58
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
W+ +RLD + ILRAG ELI VP ISEYV +A FF E KF+N +LD
Sbjct: 59 AAGWTLARLDKTMVQILRAGTYELIARADVPKAAAISEYVDVAKAFFDDREAKFVNGLLD 118
Query: 152 KVSRKEE 158
V+++
Sbjct: 119 AVAKQVR 125
>gi|319942896|ref|ZP_08017179.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
51599]
gi|319743438|gb|EFV95842.1| transcription antitermination factor NusB [Lautropia mirabilis ATCC
51599]
Length = 130
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +YQ + I + ET + D F ++ G + + +
Sbjct: 1 MQGIYQWLLSAEDIGAIQAHIET-----------SPGFDKADRSHFDTLLKGTISQASAL 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+ ++ + + L + +IL EL + +P V+I+E V +A +F D
Sbjct: 50 EAILLP--SLDRPLNLLSPVERAILMQATFELKDLQEIPYRVVINEAVELAKNFGGTDGY 107
Query: 144 KFINAVLDKVSRKEEIKR 161
K++N VLD+++
Sbjct: 108 KYVNGVLDRIAPSVRPHE 125
>gi|253702184|ref|YP_003023373.1| sun protein [Geobacter sp. M21]
gi|251777034|gb|ACT19615.1| sun protein [Geobacter sp. M21]
Length = 448
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 22/162 (13%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R AA L +I+ +I + + + D
Sbjct: 1 MSSKNPRR----AAFDILLRIEKEKSFADILIDHELS-----------KDIIKGADRGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ R+ +D +IS ++ +L++ + +LR G+ + VPV ++E
Sbjct: 46 TELVYGVLRRQGTLDYIISQFSKQRP--EKLELFVRLLLRLGIYQCFFLDRVPVSAAVNE 103
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI----KRSGCVSA 167
V +A + FINAVL R + R+ +
Sbjct: 104 TVNLAKEL-APRASGFINAVLRNADRGRDTITYPDRAARPAE 144
>gi|163790822|ref|ZP_02185247.1| Sun protein [Carnobacterium sp. AT7]
gi|159873890|gb|EDP67969.1| Sun protein [Carnobacterium sp. AT7]
Length = 458
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ N++ K + ++ +R A+ L + D G Y E ++
Sbjct: 1 METNQEPQKRNVKKT-SRYLAMSILERTDKTGS-----------YSNLLINEAIQKNKLS 48
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D +++GV+ RK +D +SS L E ++D+ + ++LR + ++I +P
Sbjct: 49 AADARLLTELVYGVLQRKLTLDFYLSSFLAED---KKIDIWVRNLLRLSIYQMIYLDKIP 105
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
V I+ E V +A + KFIN VL RK
Sbjct: 106 VHAILFEAVEVAKKKGHIGISKFINGVLRNADRK 139
>gi|294648615|ref|ZP_06726078.1| transcription antitermination protein NusB [Acinetobacter
haemolyticus ATCC 19194]
gi|292825491|gb|EFF84231.1| transcription antitermination protein NusB [Acinetobacter
haemolyticus ATCC 19194]
Length = 149
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSQNPVHEI-----------EARTRVENAMHKVDLNYYHELLTQVVAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + S LD + + LR G EL + VP V++ E + +A F D
Sbjct: 67 ALDELLVPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S K
Sbjct: 125 SHKYINGVLDRLSSKLREAE 144
>gi|302670343|ref|YP_003830303.1| transcription antitermination factor NusB [Butyrivibrio
proteoclasticus B316]
gi|302394816|gb|ADL33721.1| transcription antitermination factor NusB [Butyrivibrio
proteoclasticus B316]
Length = 133
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R Q L++++ S E++ + E + D E + D ++ R
Sbjct: 2 NRTELREQIFQLLFRVEFN--SKEEMMEQEELFTTEGDLE------FSKSDADYIRDKYE 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ D+ + ID I+ W SR+ + +I+R V E+ +VP V I+E V +A
Sbjct: 54 KIADKLEEIDKAINEK-AVGWETSRMAKVDLTIIRLAVYEIKFDETVPTGVAINEAVELA 112
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F P F+N VL K ++
Sbjct: 113 KKFGQDGSPAFVNGVLAKFAQ 133
>gi|160934296|ref|ZP_02081683.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
gi|156866969|gb|EDO60341.1| hypothetical protein CLOLEP_03167 [Clostridium leptum DSM 753]
Length = 134
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A +++ S E++ + R + + + H
Sbjct: 2 KRHEAREQAFFLIFERTFQEASLEELVESAQLARDITIC-------------GFAQNVFH 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + ID +I W+ +RL + S+LR V E++ +PV V I+E V IA
Sbjct: 49 GVEKHGEEIDGMIEKHC-IGWTKNRLSRVAVSVLRTAVYEMLYEEKIPVSVSINEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ ++ F+N VL V+++ E
Sbjct: 108 KTYGSTEDASFVNGVLGSVAKELE 131
>gi|291518519|emb|CBK73740.1| ribosomal RNA small subunit methyltransferase RsmB [Butyrivibrio
fibrisolvens 16/4]
Length = 423
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ + +I G + + + + +++G ++R
Sbjct: 7 REIAMETVIEILENGQFSHIYLKAVLDKY----------GYLEKNERAFLNRLVNGTVER 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D +I S ++ ++ +++R GV E+ +VP +EYV +A +
Sbjct: 57 KLQLDYIIDSFSKT--KVKKMKPLIRTVMRLGVYEIYYMDAVPDSATCNEYVKLAKKRGF 114
Query: 140 GDEPKFINAVLDKVSRKE 157
F+N VL +SR++
Sbjct: 115 AGLSGFVNGVLRNISREK 132
>gi|261417120|ref|YP_003250803.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373576|gb|ACX76321.1| NusB antitermination factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325378|gb|ADL24579.1| N utilization substance protein B [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 146
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR+ A+Q LY ++I G + + + + D ++ ++ V
Sbjct: 7 RPARVFAMQLLYAMEISGGTVADALPGVLEAQPLQDNM-----------KKYGMKLVDLV 55
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K +D I + W R+ + +LR ++EL+ +P++V+ISE V +A
Sbjct: 56 LAHKAELDSEI-EACSAHWGIERMATLDRIVLRIAMVELLYVPEIPMKVVISEAVQVAAK 114
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
F F+N +L +K
Sbjct: 115 FSTDSSGTFVNGLLAGFLQKR 135
>gi|210615789|ref|ZP_03290770.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
gi|210150125|gb|EEA81134.1| hypothetical protein CLONEX_02988 [Clostridium nexile DSM 1787]
Length = 132
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + L++I+ E + D ++ D +
Sbjct: 2 NRSELREHIFRMLFRIEFNSE---------EEMKEQEDLYFELLGETDEQDKTYILNKYK 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+D+K+ ID L++ T W SR++ + +ILR V E+ VP V I+E V +A
Sbjct: 53 AVVDKKEEIDGLLNEY-TTGWKTSRMNRVDLTILRLAVYEMKWDEEVPTGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ + P F+N VL K++
Sbjct: 112 KKYSSDEGPSFVNGVLAKLA 131
>gi|182683397|ref|YP_001835144.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CGSP14]
gi|182628731|gb|ACB89679.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CGSP14]
Length = 146
Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + L R R A QAL ++ G T+
Sbjct: 1 MTRTSSMTSP-LLESRRQLRKCAFQALMSLEF-GTDVETACRFAYTHDREYTDVQLP--- 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+
Sbjct: 56 ------AFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD- 108
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P V I+E + +A DF +FIN +L + +E+
Sbjct: 109 TPQLVAINEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146
>gi|226953323|ref|ZP_03823787.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
27244]
gi|262373826|ref|ZP_06067104.1| transcription antitermination factor NusB [Acinetobacter junii
SH205]
gi|226835949|gb|EEH68332.1| transcription antitermination protein NusB [Acinetobacter sp. ATCC
27244]
gi|262311579|gb|EEY92665.1| transcription antitermination factor NusB [Acinetobacter junii
SH205]
Length = 149
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSQNPVHEI-----------EARTRVENAMHKVDLNYYHELLTQVVAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + S LD + + LR G EL + VP V++ E + +A F D
Sbjct: 67 ALDELLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S K
Sbjct: 125 SHKYINGVLDRLSSKLREAE 144
>gi|323692061|ref|ZP_08106308.1| sun protein [Clostridium symbiosum WAL-14673]
gi|323503861|gb|EGB19676.1| sun protein [Clostridium symbiosum WAL-14673]
Length = 449
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G + I+S+ T D + + ++ G ++
Sbjct: 14 REIILDILLEVLEKGKYSHVILSQALTKY----------QYLEKQDRSFIKRVVDGTVEY 63
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++S +++ ++ +ILR ++ VP +E V +A +
Sbjct: 64 RIQLDYILNSYSKV--KVNKMKPVIRTILRMSAYQICHMDRVPDSAACNEAVKLAEKRGF 121
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL +SR ++
Sbjct: 122 SGLKGFVNGVLRSISRGKD 140
>gi|332976420|gb|EGK13268.1| RNA methyltransferase Sun [Desmospora sp. 8437]
Length = 453
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ G Y + S D +++G +
Sbjct: 7 ARNVALDVLIAVEERG-----------AYSNLLLNDRLQRSSLSPRDRGLATELVYGTLQ 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK +D +++ + + LD + +LR G+ +L VP + E V IA
Sbjct: 56 RKNTLDWILNKLVRKG--IDTLDPWVRHLLRLGIYQLRYLDRVPSRAAVHETVEIAKARG 113
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ P +N VL R+
Sbjct: 114 HRGIPGLVNGVLRSYLRRGRE 134
>gi|322382777|ref|ZP_08056621.1| transcription antitermination-like protein NusB [Paenibacillus
larvae subsp. larvae B-3650]
gi|321153246|gb|EFX45692.1| transcription antitermination-like protein NusB [Paenibacillus
larvae subsp. larvae B-3650]
Length = 133
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+ + + E + + E V+ + ++ G + ++ ID ++S
Sbjct: 1 MTMNEVTAKEAVDSVIDEALH-ENEGAVDLNGDTSAKPYIHELVEGTLTNRERIDQILSE 59
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
L W RL + +LR E++ P +V+++E + +A F + KF+N V
Sbjct: 60 YLKG-WQMDRLSKVDREVLRMAAYEMLYRQDTPPKVVVNEAIELAKHFGTDESGKFVNGV 118
Query: 150 LDKVSRKEEIKRS 162
L K+ ++ + ++
Sbjct: 119 LGKLIKEMDSLKA 131
>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
3986]
gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Eubacterium saburreum DSM
3986]
Length = 444
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ R ++AL ID+ G + ++I S D +F ++HG
Sbjct: 3 KTNIRTLILEALMLIDVEGEYSHKVIDMALEKY----------SYLSKADRGFFSKVVHG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V++ + +D +I R+ ++ ILR + +++ VP II+E V +
Sbjct: 53 VVEYRLQLDFIIKKYNGG----KRIKPVIREILRMAIYQILYMDRVPDRAIINEAVNLVK 108
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
F+N +L K+S ++E
Sbjct: 109 LRRLTALTGFVNGILRKISSEKET 132
>gi|32265536|ref|NP_859568.1| transcription antitermination protein NusB [Helicobacter hepaticus
ATCC 51449]
gi|39931804|sp|Q7VK55|NUSB_HELHP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|32261584|gb|AAP76634.1| transcription termination factor NusB [Helicobacter hepaticus ATCC
51449]
Length = 157
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 14/159 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A + LY D+ S EI E + ++ +
Sbjct: 1 MATRTQAREAVIGMLYAYDLGNESIIEIARSMLE-----------EKKIKNKQQDFAFSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV++ IDL I+ L E W FSRL + ++LR G E++ + VII+E V
Sbjct: 50 LQGVIEHLSQIDLCIAPYLKE-WEFSRLGGMERAMLRLGAFEILYTETDTP-VIINEAVE 107
Query: 133 IAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ + D P+FIN VLD +S+ + + TQ
Sbjct: 108 LGKMYGGEDNAPRFINGVLDALSKAHTKNKKSEDCSKTQ 146
>gi|15902434|ref|NP_357984.1| transcription antitermination protein NusB [Streptococcus
pneumoniae R6]
gi|183603887|ref|ZP_02722699.2| transcription antitermination factor NusB [Streptococcus pneumoniae
MLV-016]
gi|15457952|gb|AAK99194.1| Transcription termination protein [Streptococcus pneumoniae R6]
gi|183577498|gb|EDT98026.1| transcription antitermination factor NusB [Streptococcus pneumoniae
MLV-016]
Length = 146
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 12/158 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + L R R A QAL ++ G T+
Sbjct: 1 MTRTSSMTSP-LLESRRQLRKCAFQALMSLEF-GTDVETACRFAYTH---------DRED 49
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ GV +K+ +D I+ L W+ RL ++ ++LR GV E+
Sbjct: 50 TDVQLPAFLIDLVSGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD- 108
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P V ++E + +A DF +FIN +L + +E+
Sbjct: 109 TPQLVAVNEAIELAKDFSDQKSARFINGLLSQFVTEEQ 146
>gi|328957299|ref|YP_004374685.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
17-4]
gi|328673623|gb|AEB29669.1| ribosomal RNA small subunit methyltransferase B [Carnobacterium sp.
17-4]
Length = 458
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 15/154 (9%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ N+ K + ++ +R A+ L + D G Y E ++
Sbjct: 1 METNQTPEKRNVKKT-SRYLAMSILERTDKTGS-----------YSNLLINEAIQKNKLS 48
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D +++GV+ RK +D +S L E ++D+ + ++LR + ++I +P
Sbjct: 49 AADARLLTELVYGVLQRKLTLDFYLSPFLNED---KKIDIWVRNLLRLSIYQMIYLDKIP 105
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
V I+ E V +A + KFIN VL R
Sbjct: 106 VHAILFEAVEVAKKKGHVGISKFINGVLRNADRN 139
>gi|296113998|ref|YP_003627936.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis RH4]
gi|295921692|gb|ADG62043.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis RH4]
gi|326565100|gb|EGE15293.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis 46P47B1]
gi|326567268|gb|EGE17388.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis 12P80B1]
gi|326568226|gb|EGE18308.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis BC8]
gi|326569926|gb|EGE19973.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis BC1]
gi|326573689|gb|EGE23647.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis O35E]
Length = 175
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIH 74
AR AVQ LY+ + + + ++ V L ++ ++
Sbjct: 26 RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVHLGYYHELMR 85
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ + ++ LI S L + S+LD+I +IL G EL +P +V++ E + +
Sbjct: 86 NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K INAV+DK+++
Sbjct: 144 VHFGATDAHKLINAVMDKIAKNVRQPE 170
>gi|266620364|ref|ZP_06113299.1| transcription antitermination factor NusB [Clostridium hathewayi
DSM 13479]
gi|288868036|gb|EFD00335.1| transcription antitermination factor NusB [Clostridium hathewayi
DSM 13479]
Length = 147
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 8/146 (5%)
Query: 16 RGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVES-----VYLHVDLEW 68
R R + L+ D +I ++ + T VE + +
Sbjct: 3 RSKLREHCFKMLFCADFYPAEEKEEQIERYFDEPKEDETTPEGVEEILHDVEMSPEEESY 62
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ VM + +D I + E W R+ +ILR + E++ VP +V I+
Sbjct: 63 LKTKTEAVMRKIPELDEKIDAV-AEGWKTKRMGKAELTILRLALYEILYDEEVPEKVAIN 121
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A F + P FIN VL K+
Sbjct: 122 EAVELAKRFGGNEAPAFINGVLAKLV 147
>gi|238926271|ref|ZP_04658031.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
gi|238885951|gb|EEQ49589.1| rRNA SAM-dependent methyltransferase RmsB [Selenomonas flueggei
ATCC 43531]
Length = 449
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 16/155 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+++ R A+Q L +I G Y A E + D + +
Sbjct: 7 ANKIDRIREQAMQVLLRIHSEG-----------AYANVALAEELRIAQMTERDRRFLTEL 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++G + + +D +I + + + +LR G ++ +P + V
Sbjct: 56 VYGTVKAGETLDYMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+A F+N VL R E KR+
Sbjct: 113 LAKKHGGKGAASFVNGVLRTALR--EPKRAALPQG 145
>gi|313905220|ref|ZP_07838588.1| sun protein [Eubacterium cellulosolvens 6]
gi|313469973|gb|EFR65307.1| sun protein [Eubacterium cellulosolvens 6]
Length = 437
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R AV+ L I + +I + D ++ + G
Sbjct: 4 RVNVRELAVETLLAIQKENRQSHLLIRDVLDQYAW----------LPDRDRAFYVRLTEG 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ + +D +I+S + + R+ ++ ILR V +L SVP ++E V +A
Sbjct: 54 TLEYRLQLDYIINSYSKTRTT--RMKPMIREILRVAVYQLRYMDSVPDSAAVNEAVRLAV 111
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL ++R+ E +
Sbjct: 112 RRGFSGLKGFVNGVLRSIAREPEKVK 137
>gi|281357054|ref|ZP_06243544.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
gi|281316612|gb|EFB00636.1| NusB antitermination factor [Victivallis vadensis ATCC BAA-548]
Length = 170
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 7/151 (4%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYL 62
+++ K +R + R A+Q L++ D+ S +E R + E+
Sbjct: 7 NDQAGFKPHAKR-LGRELAMQYLFRCDMRDELPSAATFGQFFEEVR---EQHALQENRLA 62
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
E+ + + + V K+ ID I +E W + RL ++ +I+R V E++ VP
Sbjct: 63 RKGREYAQQLYNNVAVHKEEIDATI-QARSENWEWDRLSVVDRNIMRIAVAEMLYEEEVP 121
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
V I E V IA D+ FIN VL+ V
Sbjct: 122 PVVSIDEAVEIARDYSGEAAGNFINGVLNGV 152
>gi|296273814|ref|YP_003656445.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
gi|296097988|gb|ADG93938.1| NusB antitermination factor [Arcobacter nitrofigilis DSM 7299]
Length = 132
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + + LY D+ + + E+ + + E+ +
Sbjct: 1 MATRTQARESVIGLLYAYDLGNEGIVKFVD-----------EILEDKKIRNKQKEFALNL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++ I+ I+ L + + + + SILR + E++ ++ +II+E +
Sbjct: 50 FNGVVNNYALINEHIALHLKQG-TIKDIGSVEKSILRLAIYEILF-ETLDRAIIINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
++ PKFIN VLDK++++
Sbjct: 108 LSKRLASDGAPKFINGVLDKITKE 131
>gi|297626339|ref|YP_003688102.1| Transcription antitermination factor (N utilization substance
protein B homolog) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922104|emb|CBL56672.1| Transcription antitermination factor (N utilization substance
protein B homolog) [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 208
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 18/156 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L+Q D+ + +R A E ++ R I
Sbjct: 35 HSTRTKARKQALDVLFQADLRNEAV---------HRTMARRTEQGEPAL----RDFTRQI 81
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + I+ I LT W+ R+ + ++ R V EL + ++V ISE +
Sbjct: 82 LDGYSEHGHEINEHIDRALTGDWTLERMSRVDRNLARIAVWELDFTT-IDLKVAISEAME 140
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+A++ + F+N +L +++ + R +A
Sbjct: 141 LANELSNDESVTFLNGLLARIAEE----RPAIPTAP 172
>gi|255655206|ref|ZP_05400615.1| N utilization substance protein B [Clostridium difficile QCD-23m63]
gi|296451191|ref|ZP_06892932.1| transcription antitermination factor NusB [Clostridium difficile
NAP08]
gi|296880457|ref|ZP_06904419.1| transcription antitermination factor NusB [Clostridium difficile
NAP07]
gi|296260012|gb|EFH06866.1| transcription antitermination factor NusB [Clostridium difficile
NAP08]
gi|296428411|gb|EFH14296.1| transcription antitermination factor NusB [Clostridium difficile
NAP07]
Length = 168
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH----------- 63
++ R ++ +YQI+I + + + + L
Sbjct: 7 QKSTTREYIMKLIYQININKEDFETLEDRVDNFLKDNSEHIINRYKELALQYSKNTNLKL 66
Query: 64 --------VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+D ++ + + + ID LI+ + W+ R+ + SILR V E+
Sbjct: 67 EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 125
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ P +V I+E V +A + PKFIN +L V +
Sbjct: 126 LYLD-TPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 166
>gi|254974736|ref|ZP_05271208.1| N utilization substance protein B [Clostridium difficile QCD-66c26]
gi|255092125|ref|ZP_05321603.1| N utilization substance protein B [Clostridium difficile CIP
107932]
gi|255100216|ref|ZP_05329193.1| N utilization substance protein B [Clostridium difficile QCD-63q42]
gi|255306105|ref|ZP_05350277.1| N utilization substance protein B [Clostridium difficile ATCC
43255]
gi|255313862|ref|ZP_05355445.1| N utilization substance protein B [Clostridium difficile QCD-76w55]
gi|255516543|ref|ZP_05384219.1| N utilization substance protein B [Clostridium difficile QCD-97b34]
gi|255649643|ref|ZP_05396545.1| N utilization substance protein B [Clostridium difficile QCD-37x79]
gi|260682807|ref|YP_003214092.1| N utilization substance protein B [Clostridium difficile CD196]
gi|260686405|ref|YP_003217538.1| N utilization substance protein B [Clostridium difficile R20291]
gi|306519760|ref|ZP_07406107.1| N utilization substance protein B [Clostridium difficile QCD-32g58]
gi|260208970|emb|CBA62018.1| N utilization substance protein B [Clostridium difficile CD196]
gi|260212421|emb|CBE03285.1| N utilization substance protein B [Clostridium difficile R20291]
Length = 168
Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH----------- 63
++ R ++ +YQI+I + + + + + L
Sbjct: 7 QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 66
Query: 64 --------VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+D ++ + + + ID LI+ + W+ R+ + SILR V E+
Sbjct: 67 EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 125
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ P +V I+E V +A + PKFIN +L V +
Sbjct: 126 LYLD-TPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 166
>gi|313894854|ref|ZP_07828414.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976535|gb|EFR41990.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 451
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 21/164 (12%)
Query: 12 LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
++ R A R A+Q L ++ + G Y A + D
Sbjct: 1 MTENRYAADKIDPVRELAMQVLTEVHVDG-----------AYANVALVRAMRAAKLPDRD 49
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ +++G + +D +++ L + +R+ + +LR G+ ++ VP
Sbjct: 50 RRFLTELVYGTVKAGDTLDYILAKYLRDGK--ARIKPQIRELLRLGIYQIFFMDKVPASA 107
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+ V +A F+NAVL R+ E R+ + +
Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRTAVREPE--RAAIPAGRS 149
>gi|21219974|ref|NP_625753.1| putative Sun-family protein [Streptomyces coelicolor A3(2)]
gi|289772815|ref|ZP_06532193.1| RNA-binding Sun protein [Streptomyces lividans TK24]
gi|7209232|emb|CAB76894.1| conserved hypothetical Sun-family protein SCL6.29c [Streptomyces
coelicolor A3(2)]
gi|289703014|gb|EFD70443.1| RNA-binding Sun protein [Streptomyces lividans TK24]
Length = 475
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 62/172 (36%), Gaps = 11/172 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIA----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q + R R+ A +AL +D ++ +
Sbjct: 1 MSEQPRRPRKTGKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLLRKAREKEGP-- 58
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ D +++G + R+ D +I+ C+ +D + +L GV +L+
Sbjct: 59 --EKFDARDAALATELVYGTLRRQGTYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLL 114
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV+R + V+
Sbjct: 115 GTR-IPSHAAVSASVELARVVLGDGRAKFVNAVLRKVARDDLDGWLERVAPP 165
>gi|269977328|ref|ZP_06184301.1| putative N utilization substance B-like protein [Mobiluncus
mulieris 28-1]
gi|269934631|gb|EEZ91192.1| putative N utilization substance B-like protein [Mobiluncus
mulieris 28-1]
Length = 197
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AV LY+ + + I R E+ + R I+
Sbjct: 7 SRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLRE-------TETTAQTPMPPYAREILE 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + ID + + + WS R+ + +I+R E++ V V I+ + +A
Sbjct: 60 GVAEHLDRIDAAL-ATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLA 118
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
+ + PKFIN +L ++ E
Sbjct: 119 AERSTDESPKFINGLLGTINDMREA 143
>gi|257868127|ref|ZP_05647780.1| sun protein [Enterococcus casseliflavus EC30]
gi|257874598|ref|ZP_05654251.1| sun protein [Enterococcus casseliflavus EC10]
gi|257802241|gb|EEV31113.1| sun protein [Enterococcus casseliflavus EC30]
gi|257808762|gb|EEV37584.1| sun protein [Enterococcus casseliflavus EC10]
Length = 452
Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++AL +I+ G Y EL + D +++G + R
Sbjct: 13 RFVALEALLRIEKGG-----------AYSNLLLRELMNQGRLNDKDGRLLTELVYGTISR 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D + + D + ++LR + +++ VP II E V IA
Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118
Query: 140 GDEPKFINAVLDKVSRK 156
KF+N VL + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135
>gi|307701058|ref|ZP_07638083.1| transcription antitermination factor NusB [Mobiluncus mulieris
FB024-16]
gi|307614053|gb|EFN93297.1| transcription antitermination factor NusB [Mobiluncus mulieris
FB024-16]
Length = 197
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 8/145 (5%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AV LY+ + + I R E+ + R I+
Sbjct: 7 SRTRARSRAVDVLYEAHLKDLDDSAGIYSLAKLRE-------TETTAQTPMPPYAREILE 59
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + + ID + + + WS R+ + +I+R E++ V V I+ + +A
Sbjct: 60 GVAEHLERIDAAL-ATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLA 118
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
+ + PKFIN +L ++ E
Sbjct: 119 AERSTDESPKFINGLLGTINDMREA 143
>gi|302387570|ref|YP_003823392.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
gi|302198198|gb|ADL05769.1| NusB antitermination factor [Clostridium saccharolyticum WM1]
Length = 147
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 16 RGIARLAAVQALYQIDIIGCSTT--EIISEYETYRFCADTELDVES-----VYLHVDLEW 68
R R + L+ D ++I +E + VE + +
Sbjct: 3 RSKMREHCFKMLFCADFYPAEEKTGQLIQYFEEPKEDDLNADGVEEIIHDVDMSEENAAY 62
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
R VM R +DL I+ E W R+ +ILR + E++ VP +V I+
Sbjct: 63 LRERAESVMARIPELDLKINEV-AEGWKTKRMGKAELTILRLALYEILFDEDVPEKVAIN 121
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A + + P FIN VL K+
Sbjct: 122 EAVELAKKYGGNEAPAFINGVLAKLV 147
>gi|6580774|gb|AAF18280.1| N-utilization substance protein B [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 129
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ ++ E+ YR A E ++ Y + +F I+ GV R + ID +IS L
Sbjct: 1 MEKTPLNILLDEFHQYRLGATIE---DATYTKAEPSFFDDIVRGVGTRCEEIDRVISENL 57
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+E+WS RLD + ILRAG EL+ VP +ISEY+ +A+ F+ E F+N +LD
Sbjct: 58 SERWSLDRLDRPMRQILRAGTYELLARPDVPTATVISEYIDVANAFYDRQEKNFVNGLLD 117
Query: 152 KVSRKEEIKRSG 163
V++K +
Sbjct: 118 TVAKKLRSSNNA 129
>gi|326559289|gb|EGE09716.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis 7169]
gi|326564337|gb|EGE14567.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis 103P14B1]
gi|326570003|gb|EGE20049.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis BC7]
gi|326572862|gb|EGE22847.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis CO72]
gi|326574686|gb|EGE24622.1| transcription termination/antitermination protein NusB [Moraxella
catarrhalis 101P30B1]
Length = 175
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIH 74
AR AVQ LY+ + + + ++ V L ++ ++
Sbjct: 26 RKARRFAVQGLYEWLMTDYRFAKQRRDLLGGNEPHTIAARTRADNAMHTVHLGYYHELMR 85
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ + ++ LI S L + S+LD+I +IL G EL +P +V++ E + +
Sbjct: 86 NIPAQIDELESLIVSQLDRE--LSKLDIIEHAILLIGTYELKHSLHIPYKVVLDEAMKLN 143
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K INAV+DK+++
Sbjct: 144 VHFGATDAHKLINAVMDKIAKNVRQPE 170
>gi|319786237|ref|YP_004145712.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
gi|317464749|gb|ADV26481.1| NusB antitermination factor [Pseudoxanthomonas suwonensis 11-1]
Length = 156
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QA+Y I G + ++I+++ E + DL +F ++ GV+ + +
Sbjct: 24 LQAIYAWQISGGNAQQVIAQF-----------AHEQAHEIADLTYFEDLVTGVLSHRASL 72
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ L +D I ++LR EL+ VP V+I+E + IA F
Sbjct: 73 DEALAPHLDRA--VEEVDAIERAVLRLAAYELLHRVDVPYRVVINEAIEIAKRFGSEHGH 130
Query: 144 KFINAVLDKVSRKEEIKR 161
++N VLD+ S +
Sbjct: 131 TYVNGVLDRASAQWRQAE 148
>gi|317498987|ref|ZP_07957269.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316893736|gb|EFV15936.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 171
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + L+ ++ E + + +
Sbjct: 36 KRSEVREHIFRILFCVEFCEK---------EEFEDQVELYFHGHENINEKTQKEITEKTE 86
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+++ ID I S T W+ RL SILR E++ VP +V I+E V +A
Sbjct: 87 NLIEHLDEIDEQI-SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 145
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ FIN VL K+ + + +
Sbjct: 146 KKYCNEKAAPFINGVLSKIGQDMDEE 171
>gi|291279490|ref|YP_003496325.1| N utilization substance protein B [Deferribacter desulfuricans
SSM1]
gi|290754192|dbj|BAI80569.1| N utilization substance protein B [Deferribacter desulfuricans
SSM1]
Length = 139
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 11/149 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ IAR A + LYQ ++ +I ++ + +
Sbjct: 1 MKLKSIAREKAFKMLYQAEMTNFKPDRLIKQFWEL----------DEEKNEKVKLLANKL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
V+D+K + D +IS L E W+F RL + + LR G+ EL PV I+ EY
Sbjct: 51 FRLVIDKKGYADDIISKYLKEGWTFERLTETVKNTLRLGIAEL-FNTETPVYAILDEYTT 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + F+N VL+K+ + I+R
Sbjct: 110 LAKKYEDEKAASFVNGVLEKIRKDFNIER 138
>gi|257877736|ref|ZP_05657389.1| sun protein [Enterococcus casseliflavus EC20]
gi|257811902|gb|EEV40722.1| sun protein [Enterococcus casseliflavus EC20]
Length = 452
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++AL +I+ G Y EL + D +++G + R
Sbjct: 13 RFVALEALLRIEKGG-----------AYSNLLLRELMNQGRLNDKDGRLLTELVYGTISR 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D + + D + ++LR + +++ VP II E V IA
Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118
Query: 140 GDEPKFINAVLDKVSRK 156
KF+N VL + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + LY + + Y + + VD + + +++GV+
Sbjct: 2 NARELAYRILY-----------DVVVKKAYINISFAKHLRNDEVKEVDAAFVKELVYGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + D +L G+ +L+ VP I+E V IA F
Sbjct: 51 ERKYTLDFILSFFIK-----KSADTKALLLLEMGLYQLLYMDKVPDYAAINETVEIAKKF 105
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
F+NAVL R++E +
Sbjct: 106 LSKKGASFLNAVLRSYLREKEKVK 129
>gi|189499780|ref|YP_001959250.1| sun protein [Chlorobium phaeobacteroides BS1]
gi|189495221|gb|ACE03769.1| sun protein [Chlorobium phaeobacteroides BS1]
Length = 447
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + D + + + D +++GV+
Sbjct: 2 KAREIALLTLQETDTQAKKSEQSLHRLLNR-----------HKPDKNDRSLATELVNGVL 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D +IS L+ + +L +ILR G +L+ +P + E V +A +
Sbjct: 51 RYRLRLDFIIS--LSYHHDLKKAAPVLRNILRLGAYQLLFLDKIPGWAAVDECVSLAVKY 108
Query: 138 FYGDEPKFINAVLDKVSRKE 157
+N VL +++ ++
Sbjct: 109 KGRHIAGIVNGVLRRIASEK 128
>gi|315924276|ref|ZP_07920500.1| N utilization substance protein B [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622437|gb|EFV02394.1| N utilization substance protein B [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 158
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R R A++A++QI+ + A + D + H +
Sbjct: 5 KKQNRRHERELALRAVFQIEFHQDAQD------LQKGIAAVIDSDAGFEHDHGSSGYAAY 58
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ V+D ID I+ L + W RL +ILR E+ P+E+ I+E V
Sbjct: 59 LVDVVVDHLAAIDERIAQYLRKDWHMDRLPGAEKAILRVATAEMCYLDQ-PLEIAINEAV 117
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A + D P++IN +L+ +
Sbjct: 118 ELAKRYCDEDAPRYINGILNNL 139
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|3915867|sp|P94464|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
Length = 447
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL +++ Y + + + +++
Sbjct: 2 KKTSVRDIALEALIKLEQNQ-----------AYSNLLLKSVIKSNELSDQNRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVKPW---VIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VL + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129
>gi|167750987|ref|ZP_02423114.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
gi|167656166|gb|EDS00296.1| hypothetical protein EUBSIR_01972 [Eubacterium siraeum DSM 15702]
gi|291557466|emb|CBL34583.1| transcription antitermination factor NusB [Eubacterium siraeum
V10Sc8a]
Length = 143
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 14/147 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R AA+ L+Q+ + + EI+ + + V+ G
Sbjct: 8 RHEMREAALLILFQMKLNPETLDEILEDCKESFEMEYNSQSVKLA-------------KG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + + ++ +I + R+ I +I++ + E+ C SVP +V I+E + A
Sbjct: 55 VAEHEDELNGII-ESYSPSRKLDRISYINLAIMKIALYEMKYCPSVPDKVAINEAIEFAK 113
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ + +FIN VL+ + K
Sbjct: 114 EYADKTDVRFINGVLNSYYKDNPTKEQ 140
>gi|126698797|ref|YP_001087694.1| N utilization substance protein B [Clostridium difficile 630]
gi|119390758|sp|Q18B61|NUSB_CLOD6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|115250234|emb|CAJ68055.1| N utilization substance protein B homolog (Protein NusB)
[Clostridium difficile]
Length = 169
Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH----------- 63
++ R ++ +YQI+I + + + + + L
Sbjct: 8 QKSTTREYIMKLIYQININKEDFETLEDKVDNFLKDNSEHIINRYKELALQYSKNTNLKL 67
Query: 64 --------VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+D ++ + + + ID LI+ + W+ R+ + SILR V E+
Sbjct: 68 EDTEIEDVIDKKYINTVCKALKENHDKIDELINKH-AKNWTVDRMPKVDVSILRLSVCEI 126
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ P +V I+E V +A + PKFIN +L V +
Sbjct: 127 LYLD-TPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEI 167
>gi|197119890|ref|YP_002140317.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
gi|197089250|gb|ACH40521.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter bemidjiensis
Bem]
Length = 448
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 18/150 (12%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R AA L +I+ +I + + + D
Sbjct: 1 MSSKNPRR----AAFDILLRIEKEKSFADILIDHELS-----------KDIIKGADRGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ R+ +D +IS ++ +L++ + +LR G+ + VPV ++E
Sbjct: 46 TELVYGVLRRQGTLDYIISQFSKQRP--EKLELFVRLLLRLGIYQCFFLDRVPVSAAVNE 103
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V +A + FINAVL R +
Sbjct: 104 TVNLAKEL-APRASGFINAVLRNADRGRDT 132
>gi|328956982|ref|YP_004374368.1| transcription antitermination protein NusB [Carnobacterium sp.
17-4]
gi|328673306|gb|AEB29352.1| transcription antitermination protein NusB [Carnobacterium sp.
17-4]
Length = 147
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R A+Q+L+Q+ + E + + A+ +VE+V + + +
Sbjct: 1 MSLTRRDIREKALQSLFQLSANEELSKE-EAMQQALTSEAELADEVETVLVP---SYLDL 56
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV++++ ID I + L E WS +RL I+R + E++ VP V ++E +
Sbjct: 57 LVSGVLEKQDEIDEKIKAHL-ENWSLNRLAKTDLMIIRIAIFEMMYVSDVPDRVALNEAL 115
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I + KF+N VL + + +
Sbjct: 116 EITKKYSDEKSRKFVNGVLANIVNENSEDEA 146
>gi|320450059|ref|YP_004202155.1| transcription antitermination factor NusB [Thermus scotoductus
SA-01]
gi|320150228|gb|ADW21606.1| transcription antitermination factor NusB [Thermus scotoductus
SA-01]
Length = 151
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++AL+ G E + + + R ++ G
Sbjct: 3 RRARELAMRALFAHTQGGVDLEEAFRHALEEMGGEEDSYGDS--LDQEGVAFARRLLEGY 60
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +D ++ E W F+++ ++LR E++ P +I V IA+
Sbjct: 61 KAHAEEVDQVL-RDTVEGWDFAQMSKTDLTVLRLAAYEMLY-EPTPFAPLIEVAVKIANR 118
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL ++ R+ +
Sbjct: 119 YGGEHSGAFVNGVLGRLYRRIQGGE 143
>gi|318057055|ref|ZP_07975778.1| RNA-binding Sun protein [Streptomyces sp. SA3_actG]
Length = 481
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 19/179 (10%)
Query: 1 MTIQDNKKDLKLSHRR---GIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
M Q S RR A R+ A AL +D ++
Sbjct: 1 MNDQTVTAPADSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR----- 55
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
E + + D +++G + + D +I++C+ +D + +L G
Sbjct: 56 --EAREKGGFDARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLG 111
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+L+ +P +S V +A +F+NAVL ++SR + V+ +
Sbjct: 112 AHQLLGTR-IPTHAAVSATVELARVVLGDGRSRFVNAVLRRISRNDLDAWLAEVAPPFE 169
>gi|256825101|ref|YP_003149061.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
gi|256688494|gb|ACV06296.1| NusB antitermination factor [Kytococcus sedentarius DSM 20547]
Length = 137
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR AV L++ + + +++ E V E+ +
Sbjct: 1 MAARSKARKRAVDLLFEAEQRSLNVEVLMARR-----------REEPEAQVVVPEFTVTL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ I+ +SS ++ WS R+ + +ILR G E++ VP V ISE V
Sbjct: 50 VEGVVSHWASINDALSSW-SQGWSLERMPAVDRAILRLGTYEIVWAEDVPDAVAISEAVN 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + P F++ +L ++S+
Sbjct: 109 LAAHLSTDESPNFVSGLLTRISQ 131
>gi|291536362|emb|CBL09474.1| transcription antitermination factor NusB [Roseburia intestinalis
M50/1]
gi|291538768|emb|CBL11879.1| transcription antitermination factor NusB [Roseburia intestinalis
XB6B4]
Length = 137
Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 17/154 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + N R R + L++++ E D
Sbjct: 1 MTEEKNM-------TRREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACS 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + + + ++ + ID I+ +E W R+ + +++R V E++
Sbjct: 45 WKEKDKTYIFEKVEKISEKLEEIDAKINEV-SEGWKTGRMGKVDLTLIRLAVYEMLYEED 103
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V I+E V +A + + P F+N VL K+
Sbjct: 104 VPAKVAINEAVELAKQYGTDNSPSFVNGVLAKLV 137
>gi|291450278|ref|ZP_06589668.1| RNA-binding Sun protein [Streptomyces albus J1074]
gi|291353227|gb|EFE80129.1| RNA-binding Sun protein [Streptomyces albus J1074]
Length = 338
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 1 MTIQDNKKDLKLSH-----RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
MT Q +++ K ++ R+ A +AL +D ++ +
Sbjct: 1 MTDQPSRRPRKTGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPALLRKAREDHPDT 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
D +++G + R+ D +I++C+ +D + +L G +L
Sbjct: 61 FE-----ARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQL 113
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ +P +S V +A KF+NAVL ++
Sbjct: 114 LGTR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRRI 150
>gi|317132176|ref|YP_004091490.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
gi|315470155|gb|ADU26759.1| NusB antitermination factor [Ethanoligenens harbinense YUAN-3]
Length = 136
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ +++ + +EI+ R + + ++ G
Sbjct: 3 RREAREQALCLVFEGLFKEENVSEILDLAVQAREEFLVDT------------FAEMLATG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D + ID I W+ SRL ++ ++LR EL+ P V I+E V +A
Sbjct: 51 VYDHRDDIDRKI-EQYAIGWTKSRLSRVVLTVLRIAFFELLYEQDTPDSVAINEAVELAK 109
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
+ + F+N VL R E+
Sbjct: 110 KYGGDGDSAFVNGVLGAFVRAEKA 133
>gi|95928560|ref|ZP_01311307.1| sun protein [Desulfuromonas acetoxidans DSM 684]
gi|95135350|gb|EAT17002.1| sun protein [Desulfuromonas acetoxidans DSM 684]
Length = 479
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L ++D G S D L+ D +++GV+
Sbjct: 29 ARRIAFDVLTRVDEGGYS-----------DLVLDAALEANPGLDPRDRALATELVYGVLR 77
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ ++D ++ + + +L + +LR G+ +L +P ++ V +A
Sbjct: 78 RRGNLDFILKAY--SRQPLKKLQPKVLRLLRLGIYQLCYLDRIPDRAVVHSMVELARRCG 135
Query: 139 YGDEPKFINAVLDKVSRK 156
+N VL R+
Sbjct: 136 LERVSGLVNGVLRSYLRE 153
>gi|153855357|ref|ZP_01996506.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
gi|149752177|gb|EDM62108.1| hypothetical protein DORLON_02520 [Dorea longicatena DSM 13814]
Length = 436
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L QI G + +I + + +++G ++R
Sbjct: 8 RELVLDMLLQITRDGEYSHIVIKNVLDKY----------QYLDKRERAFITRVVNGTLER 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +++ ++ +ILR+ V ++ SVP I +E V +A +
Sbjct: 58 MIEIDYIINLFSKV--KVNKMKQLIRTILRSSVYQMKYMDSVPDSAICNEAVKLAGKRGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL +SR +
Sbjct: 116 VNLKGFVNGVLRNISRNLDKIN 137
>gi|228992930|ref|ZP_04152854.1| N utilization substance protein B [Bacillus pseudomycoides DSM
12442]
gi|228998974|ref|ZP_04158556.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
gi|229006513|ref|ZP_04164157.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
gi|228754739|gb|EEM04140.1| N utilization substance protein B [Bacillus mycoides Rock1-4]
gi|228760591|gb|EEM09555.1| N utilization substance protein B [Bacillus mycoides Rock3-17]
gi|228766787|gb|EEM15426.1| N utilization substance protein B [Bacillus pseudomycoides DSM
12442]
Length = 120
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
+QALYQ+DI G + ++ VE+ + E+ ++ G ++ K+
Sbjct: 1 MQALYQMDITGE---------------LEPKVAVENTLEEGEETNEFLESLVVGCVEHKE 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
ID I L + W R+ ++ SILR V E+ +P V I+E + IA F +
Sbjct: 46 AIDEAIRQNLKK-WKLERISIVDRSILRLAVYEMKYMEEIPHNVTINEAIEIAKTFGDEE 104
Query: 142 EPKFINAVLDKV 153
+FIN VL +
Sbjct: 105 SRRFINGVLSNI 116
>gi|325567768|ref|ZP_08144379.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
gi|325158541|gb|EGC70688.1| RNA methyltransferase Sun [Enterococcus casseliflavus ATCC 12755]
Length = 452
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++AL +I+ G Y EL + D +++G + R
Sbjct: 13 RFVALEALLRIEKGG-----------AYSNLLLRELMNQGRLNDKDGRLLTELVYGTISR 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D + + D + ++LR + +++ VP II E V IA
Sbjct: 62 QLLLDYYLDRFIKNARKV---DPWVKTLLRLSLYQMLYLDKVPAHAIIHEAVDIAKAKGN 118
Query: 140 GDEPKFINAVLDKVSRK 156
KF+N VL + R+
Sbjct: 119 PGTGKFVNGVLRTIQRQ 135
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
Length = 441
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A + L+ I+ Y A + + + D + II+GV+
Sbjct: 2 KSRNLAYKVLFDIEKNQ-----------NYSNMAINKHFKDCNLDNRDRGFATEIIYGVV 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ K ++D +I K + +L++ + +LR G+ +++ SV ++E V +
Sbjct: 51 ENKIYLDYIIDKLSKIKSN--KLNLKVKILLRMGIYQILFLDSVSDYAAVNETVNLTKKL 108
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
F+NAVL V R++E
Sbjct: 109 -DNRSAGFVNAVLRNVIRQKE 128
>gi|294083737|ref|YP_003550494.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663309|gb|ADE38410.1| NusB antitermination factor [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 160
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q LYQ I ++ + +Y T+ ++ +D E + GV +
Sbjct: 24 IQILYQSQITDRASVDFAPDYLTHYA---PDVSKSFRVKDLDHEHLNALYTGVEKEMVLL 80
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I+ L WS RL +I ++LR G EL +P ++SEY I+
Sbjct: 81 DEDIADSLASGWSIKRLPLIELTLLRCGAYELRFMPHIPARAVVSEYAAISDACGCE--V 138
Query: 144 KFINAVLDKVSRKEEIKRSGCV 165
F+NAVLD++SR G
Sbjct: 139 AFVNAVLDRLSRIVRTVEMGTA 160
>gi|240147074|ref|ZP_04745675.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
gi|257200759|gb|EEU99043.1| ribosomal RNA small subunit methyltransferase B [Roseburia
intestinalis L1-82]
Length = 446
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++ G + +++ + + ++ G +
Sbjct: 8 RRLALDVLLEVTEHGAYSNQVLRAVLEKY----------QYMEKYERAFLTRLVEGTIQH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I K ++ ++ +ILR GV ++ SVP +E V +A +
Sbjct: 58 MIELDYVIDQFSKVKV--KKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115
Query: 140 GDEPKFINAVLDKVSRK 156
F+N VL ++R
Sbjct: 116 STLSGFVNGVLRNIARN 132
>gi|225418642|ref|ZP_03761831.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
DSM 15981]
gi|225041829|gb|EEG52075.1| hypothetical protein CLOSTASPAR_05866 [Clostridium asparagiforme
DSM 15981]
Length = 457
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G ++++ D + + G ++
Sbjct: 12 REIVLDILMEVLERGSFVHMVLNQALDKY----------QYLDKADRAFITRLTEGTLEY 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ ++ ++ ++LR V +++ VP + +E V +A +
Sbjct: 62 LIQIDAIINQYSKT--KTQKMKPVIRNLLRLSVYQILYMDRVPDSAVCNEAVKLAAKRRF 119
Query: 140 GDEPKFINAVLDKVSRKE 157
F+N VL ++R++
Sbjct: 120 EGLKGFVNGVLRTIAREK 137
>gi|167766576|ref|ZP_02438629.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
gi|167711699|gb|EDS22278.1| hypothetical protein CLOSS21_01082 [Clostridium sp. SS2/1]
Length = 167
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + L+ ++ E + + +
Sbjct: 32 KRSEVREHIFRILFCVEFCEK---------EEFEDQVELYFHGHENINEKTQKEITEKTE 82
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+++ ID I S T W+ RL SILR E++ VP +V I+E V +A
Sbjct: 83 NLIEHLDEIDEQI-SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 141
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ FIN VL K+ + + +
Sbjct: 142 KKYCNEKAAPFINGVLSKIGQDMDEE 167
>gi|134301537|ref|YP_001121505.1| transcription antitermination factor NusB [Francisella tularensis
subsp. tularensis WY96-3418]
gi|134049314|gb|ABO46385.1| transcription antitermination factor NusB [Francisella tularensis
subsp. tularensis WY96-3418]
Length = 141
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|332678675|gb|AEE87804.1| Transcription termination protein NusB [Francisella cf. novicida
Fx1]
Length = 141
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|289422315|ref|ZP_06424165.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius 653-L]
gi|289157260|gb|EFD05875.1| transcription antitermination factor NusB [Peptostreptococcus
anaerobius 653-L]
Length = 164
Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 15/157 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH----------- 63
+R ++R ++ LYQ ++ +++ +++E + +
Sbjct: 9 QRKVSRELFMKFLYQEAVLKSDWSDLKAKFEEFIPSVQDDAMEIHNSHGGRELDLLEMPG 68
Query: 64 ---VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+D + ++ ++ ID I+ KW+ L ++ +ILR + E++
Sbjct: 69 DLLLDASYLMDMVAAFDANREEIDSNINKF-ARKWTIDTLPIVDVAILRMAITEILYMID 127
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P + E V +A + K+IN +L V +
Sbjct: 128 IPDGITCDEAVNLAKKYCDDGAYKYINGILGSVVNDK 164
>gi|320011939|gb|ADW06789.1| Fmu (Sun) domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 477
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 12/156 (7%)
Query: 1 MTIQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q ++ K ++ R A + L +D ++ + +
Sbjct: 1 MNDQQRRRPAKPHRRPKKDPVRFLAFEVLRAVDERDAYANLVLPPLL-------KKARAK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D ++++C+ +D + +L GV +L+
Sbjct: 54 GDFEGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+P +S V +A KF+NAVL KVS
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146
>gi|229817326|ref|ZP_04447608.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
20098]
gi|229785115|gb|EEP21229.1| hypothetical protein BIFANG_02588 [Bifidobacterium angulatum DSM
20098]
Length = 137
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E E+ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQDI-----------LSLLEERIAVPGAQTPLPEYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ++ ID + C + W SR+ ++ +ILR E++ VP V I E + +A
Sbjct: 52 VAEHRRDIDEKLDEC-STGWKISRMGVVDRNILRIAAWEIMYNDEVPDRVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKV 153
G+ P FI+ +L V
Sbjct: 111 TLCDGESPAFIHGLLSAV 128
>gi|225377103|ref|ZP_03754324.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
16841]
gi|225211008|gb|EEG93362.1| hypothetical protein ROSEINA2194_02748 [Roseburia inulinivorans DSM
16841]
Length = 130
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 16 RGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + L++++ E ++ +E D E+ H
Sbjct: 3 RRGLREQVFKMLFRVEFHNVEDMPEQMNMFEEV-----------EECSEKDKEYISNKFH 51
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++++ ID I+ +E W R+ + +++R V E+ +PV+V I+E V +A
Sbjct: 52 NIVEKIDEIDAAINEV-SEGWKTRRMGKVDLTLIRLAVYEMKYEDDIPVKVAINEAVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ + P F+N VL K++
Sbjct: 111 KQYGTDESPAFVNGVLAKLA 130
>gi|326780519|ref|ZP_08239784.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
gi|326660852|gb|EGE45698.1| Fmu (Sun) domain protein [Streptomyces cf. griseus XylebKG-1]
Length = 477
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 1 MTIQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q ++ K ++ R A +AL +D ++ + +
Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D ++++C+ +D + +L GV +L+
Sbjct: 54 GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P +S V +A KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145
>gi|260583696|ref|ZP_05851444.1| transcription antitermination factor NusB [Granulicatella elegans
ATCC 700633]
gi|260158322|gb|EEW93390.1| transcription antitermination factor NusB [Granulicatella elegans
ATCC 700633]
Length = 154
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-------VDLE 67
+R R+ A+QALYQ+DI +E + D + E VY + ++
Sbjct: 7 KRRALRIIAIQALYQMDICK-DLSEFDAVRLALDVLHDEQSFDEEVYSNEALLDEFPEIH 65
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVI 126
+ +I GV ++ + ID LISS L W +R+ + I+R V E+ VP V
Sbjct: 66 YSLDLIQGVQNQLEEIDALISSHLKG-WELNRIVRLDLMIMRVAVCEMRSPELEVPQTVA 124
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++E + IA + KFIN VL
Sbjct: 125 LNEAIEIAKLYSDEKSAKFINGVLSNFV 152
>gi|182439855|ref|YP_001827574.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468371|dbj|BAG22891.1| putative RNA-binding Sun protein [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 477
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 1 MTIQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q ++ K ++ R A +AL +D ++ + +
Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D ++++C+ +D + +L GV +L+
Sbjct: 54 GDFDARDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P +S V +A KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145
>gi|293364851|ref|ZP_06611568.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
gi|307703100|ref|ZP_07640047.1| transcription antitermination factor NusB [Streptococcus oralis
ATCC 35037]
gi|315612604|ref|ZP_07887517.1| transcription antitermination factor NusB [Streptococcus sanguinis
ATCC 49296]
gi|322374852|ref|ZP_08049366.1| transcription antitermination factor NusB [Streptococcus sp. C300]
gi|331266955|ref|YP_004326585.1| transcription antitermination protein NusB [Streptococcus oralis
Uo5]
gi|291316301|gb|EFE56737.1| N utilization substance protein B [Streptococcus oralis ATCC 35037]
gi|307623493|gb|EFO02483.1| transcription antitermination factor NusB [Streptococcus oralis
ATCC 35037]
gi|315315585|gb|EFU63624.1| transcription antitermination factor NusB [Streptococcus sanguinis
ATCC 49296]
gi|321280352|gb|EFX57391.1| transcription antitermination factor NusB [Streptococcus sp. C300]
gi|326683627|emb|CBZ01245.1| transcription antitermination protein NusB [Streptococcus oralis
Uo5]
Length = 140
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDTDVQLPAFLTELV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|254368862|ref|ZP_04984875.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica FSC022]
gi|157121783|gb|EDO65953.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica FSC022]
Length = 141
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRSEE 141
>gi|291536615|emb|CBL09727.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis M50/1]
gi|291541043|emb|CBL14154.1| ribosomal RNA small subunit methyltransferase RsmB [Roseburia
intestinalis XB6B4]
Length = 446
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++ G + +++ + + ++ G +
Sbjct: 8 RRLALDVLLEVTEHGAYSNQVLRAVLEKY----------QYMEKYERAFLTRLVEGTIQH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I K ++ ++ +ILR GV ++ SVP +E V +A +
Sbjct: 58 MIELDYVIDQFSKVKV--KKMKPVIRNILRMGVYQIQYMDSVPDSAACNEAVKLARKSGF 115
Query: 140 GDEPKFINAVLDKVSRK 156
F+N VL ++R
Sbjct: 116 STLSGFVNGVLRNIARN 132
>gi|239939911|ref|ZP_04691848.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
15998]
gi|239986397|ref|ZP_04707061.1| putative RNA-binding Sun protein [Streptomyces roseosporus NRRL
11379]
gi|291443343|ref|ZP_06582733.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
15998]
gi|291346290|gb|EFE73194.1| RNA-binding Sun family protein [Streptomyces roseosporus NRRL
15998]
Length = 477
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 60/155 (38%), Gaps = 12/155 (7%)
Query: 1 MTIQDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q ++ K ++ R A +AL +D ++ + +
Sbjct: 1 MNDQPRRRPAKPHRRPKKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D ++++C+ +D + +L GV +L+
Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIVAACIDR--PLREVDPPVLDVLNMGVHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P +S V +A KF+NAVL KV
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKV 145
>gi|317013425|gb|ADU80861.1| transcription antitermination protein NusB [Helicobacter pylori
Gambia94/24]
Length = 138
Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++R ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ + + PKF+NA+LD +S+K + K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKLDQK 135
>gi|315453162|ref|YP_004073432.1| N utilization substance protein B-like protein [Helicobacter felis
ATCC 49179]
gi|315132214|emb|CBY82842.1| N utilization substance protein B homolog [Helicobacter felis ATCC
49179]
Length = 134
Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY + + + + + + + +
Sbjct: 1 MATRSQVREAVVSLLYAYESGNEAM-----------LKSAPDFFTQKKIKNAQQRFALDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G ++ +D ++ L + W +R+ + +ILR G E++ + PV V+I+E +
Sbjct: 50 LEGTLEHLPSLDNALTPLLKD-WDLARIGSMERAILRLGAYEILHTPTNPV-VVINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
++ ++ + PK INA+LD + +++
Sbjct: 108 LSKNYGEDNAPKLINAILDALCKQK 132
>gi|293374996|ref|ZP_06621291.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325843368|ref|ZP_08167951.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
gi|292646406|gb|EFF64421.1| ribosomal RNA small subunit methyltransferase B [Turicibacter
sanguinis PC909]
gi|325489397|gb|EGC91770.1| ribosomal RNA small subunit methyltransferase B [Turicibacter sp.
HGF1]
Length = 444
Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+Q L I I G Y A E +S D + +++G +
Sbjct: 3 NARELALQTLTDILING-----------AYSNHALNEQIEKSDLTIQDKNFMTELVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+Q ++ + K + +++ + +++ SVP ISE V IA
Sbjct: 52 QHQQLLNFYATPFFNGKVK-----GWIRILIQMTLYQILYLDSVPEHAAISEAVNIAKKR 106
Query: 138 FYGDEPKFINAVLDKVSRK 156
K +NA+L ++ R
Sbjct: 107 GGQFNGKLVNAILREMMRN 125
>gi|320529119|ref|ZP_08030211.1| transcription antitermination factor NusB [Selenomonas artemidis
F0399]
gi|320138749|gb|EFW30639.1| transcription antitermination factor NusB [Selenomonas artemidis
F0399]
Length = 137
Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+ L+Q+D + ++ DL + + ++
Sbjct: 2 SRRHAREAALLTLFQMDFSANEAS--------LYDVSEIAAGAVEGLKEKDLPYAQGLVR 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCI 133
G ID I+ ++W R+ + +++R E+ I+E V +
Sbjct: 54 GTRAAIGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQEERIDPGTAINEAVEL 112
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + D +++N +L + +
Sbjct: 113 AKKYGAEDAGRYVNGILSAMQK 134
>gi|50086525|ref|YP_048035.1| transcription antitermination protein NusB [Acinetobacter sp. ADP1]
gi|81612974|sp|Q6F6V2|NUSB_ACIAD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|49532501|emb|CAG70213.1| transcription termination, L factor (N utilization substance
protein B) [Acinetobacter sp. ADP1]
Length = 149
Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + VE+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSRNPVHEI-----------EARTRVENAMHKVDLGYYHELLTQVVAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + + LD + + LR G EL + +P V++ E + +A F D
Sbjct: 67 TLDTLLVPVLDRE--LNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD+++ +
Sbjct: 125 SHKYINGVLDRLASRLREAE 144
>gi|311742352|ref|ZP_07716161.1| transcription antitermination factor NusB [Aeromicrobium marinum
DSM 15272]
gi|311313980|gb|EFQ83888.1| transcription antitermination factor NusB [Aeromicrobium marinum
DSM 15272]
Length = 136
Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 14/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A+ L++ ++ G ++E + +
Sbjct: 1 MGARTKYRKRALDVLFESELQGLEAGGSLTERL-------------VTNEPPINPYTVTL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV + ID +IS W+ R+ + ++LR G+ E++ VP V +SE V
Sbjct: 48 VEGVAGTRDRIDAIISEH-AHGWTLDRMPAVDRNLLRLGIYEILYVDDVPDAVAVSEAVS 106
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + + F+N VL KV
Sbjct: 107 LAQELSTDESASFVNGVLSKVV 128
>gi|318078496|ref|ZP_07985828.1| RNA-binding Sun protein [Streptomyces sp. SA3_actF]
Length = 685
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 1 MTI--QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
MT +++ + R+ R+ A AL +D ++ E
Sbjct: 1 MTAPADSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + D +++G + + D +I++C+ +D + +L G +L+
Sbjct: 54 EKGGFDARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+P +S V +A +F+NAVL ++SR + V+ +
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRSRFVNAVLRRISRNDLDAWLAEVAPPFE 164
>gi|312143732|ref|YP_003995178.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
gi|311904383|gb|ADQ14824.1| NusB antitermination factor [Halanaerobium sp. 'sapolanicus']
Length = 133
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R+ +Q LY +DI + ++ + E D+ + + ++
Sbjct: 5 SRHKQRIWVLQILYGLDIRNKLDLESALKSFKEFL--------KEKEIKKEDI-YAKELL 55
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ ++ +D I+ W+ R+ + +ILR + E+ +P V I+E V I
Sbjct: 56 LGVITEREILDAQINEQ-AIDWTIERMPPVDRNILRIAIYEIQH--EMPAGVAINEAVKI 112
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
A F P FIN +L K +
Sbjct: 113 AKKFADDRSPSFINGILAKFA 133
>gi|238019309|ref|ZP_04599735.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
gi|237864008|gb|EEP65298.1| hypothetical protein VEIDISOL_01173 [Veillonella dispar ATCC 17748]
Length = 134
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R AR A Q LY + + D + ++ +D +
Sbjct: 1 MVIKRNRREARQYAFQMLYANEF--------------HVDQNDVQFPEGHMHKSMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIIS 128
II+GV+ + ID + + LD + +ILR + E+ E + + I+
Sbjct: 47 NSIINGVLSASETIDATLQPFCKSR-KVENLDKVDRAILRIALWEMTNEADPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A DF K INA+LD ++ +
Sbjct: 106 EAIQLAKDFGSDSSYKLINAILDAYNKSK 134
>gi|189184153|ref|YP_001937938.1| transcription antitermination protein NusB [Orientia tsutsugamushi
str. Ikeda]
gi|189180924|dbj|BAG40704.1| N utilization substance protein B [Orientia tsutsugamushi str.
Ikeda]
Length = 162
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCST------TEIISEYETYRFCADTELDVESVYLH 63
+ + + I R+A++Q +Y I+ II+ Y+ D ELD
Sbjct: 5 MIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFK 64
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ + +++ +D + ID++ISS L + W L +IL SILR EL S P
Sbjct: 65 LRTNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPY 124
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+V+I+E+ IA DF E F+N++L+K+S
Sbjct: 125 KVVINEFTNIASDFVKDSEIGFVNSLLEKISFNVRTN 161
>gi|145630810|ref|ZP_01786588.1| transcription antitermination protein NusB [Haemophilus influenzae
R3021]
gi|144983692|gb|EDJ91152.1| transcription antitermination protein NusB [Haemophilus influenzae
R3021]
Length = 121
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y + G + ++ + ++ VD +FR + ++ + +D I
Sbjct: 2 YSWAVSGNTAEQVELAFV-----------LDQDMDGVDKPYFRKLFRQTIENIETVDFSI 50
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
S + F LD I +ILR V EL VP +V+I+E + +A F + K+IN
Sbjct: 51 SPYIDRA--FDELDPIETAILRLAVYELRFELDVPYKVVINEAIEVAKVFGADESHKYIN 108
Query: 148 AVLDKVS 154
VLDK++
Sbjct: 109 GVLDKIA 115
>gi|320530184|ref|ZP_08031254.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
gi|320137617|gb|EFW29529.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
artemidis F0399]
Length = 451
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 21/162 (12%)
Query: 12 LSHRRGIA------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
++ R A R A+Q L ++ G Y A + D
Sbjct: 1 MTENRYAADKIDPVRELAMQVLMEVHRDG-----------AYANVALVRAMRAAQLTDRD 49
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ +++G + +D +I+ L + +R+ + ILR G+ ++ VP
Sbjct: 50 RRFLTELVYGTVKAGDTLDDMIAKYLRDGK--ARIKPQIREILRLGIYQIFFMDKVPASA 107
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ V +A F+NAVL R+ E R+ +
Sbjct: 108 ACNTAVELAKKHGKRGADSFVNAVLRAAVREPE--RAAIPAG 147
>gi|322386860|ref|ZP_08060484.1| N utilization substance protein B [Streptococcus cristatus ATCC
51100]
gi|321269142|gb|EFX52078.1| N utilization substance protein B [Streptococcus cristatus ATCC
51100]
Length = 145
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G I + Y + D E E+ + ++
Sbjct: 7 ESRRELRQRAFQALMSLEYEG---DAIEACRFAYTYDKDEE---ETDAEVNIPAFLLNLV 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K+ +D I+ L W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 61 TGVLQSKEELDKKIAQHLKAGWTVERLTLVEKNILRLGIFEMTEFD-TPERVAVNEAIEL 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
+ F KFIN +L + +E+
Sbjct: 120 SKQFSDEKSSKFINGILSQFITEEK 144
>gi|157738073|ref|YP_001490757.1| transcription antitermination protein NusB [Arcobacter butzleri
RM4018]
gi|315636425|ref|ZP_07891669.1| transcription antitermination factor NusB [Arcobacter butzleri
JV22]
gi|166918802|sp|A8EVW4|NUSB_ARCB4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|157699927|gb|ABV68087.1| transcription termination factor NusB [Arcobacter butzleri RM4018]
gi|315479291|gb|EFU69980.1| transcription antitermination factor NusB [Arcobacter butzleri
JV22]
Length = 131
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + + LY D+ T+ + E+ E + ++ +
Sbjct: 1 MATRTQARESVIGLLYAYDLGNDGITKFVD-----------EILEEKKIRNNQKDFALNL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+G + ID I S L + + S + + SILR + E++ S+P +II+E +
Sbjct: 50 FNGTIKNLSQIDENIVSNLNQG-TLSDIGSVEKSILRLAIYEILF-ESLPKAIIINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
++ PKFIN +LDK+ +
Sbjct: 108 LSKRLASDGAPKFINGLLDKIVK 130
>gi|241894790|ref|ZP_04782086.1| transcription antitermination protein NusB [Weissella
paramesenteroides ATCC 33313]
gi|241872002|gb|EER75753.1| transcription antitermination protein NusB [Weissella
paramesenteroides ATCC 33313]
Length = 139
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 10/139 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R AA Q+L+ + + I++ D E + ++
Sbjct: 5 NRHQIRQAAFQSLFGLALNPTADVDTTITQVL--------VGDPEIAWEDEIPADLTSVV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ ++ +DL+I+ L+ W+ RL+ ++R + E VP ++ ++E + +
Sbjct: 57 LGVVAKQDELDLMITDHLSSDWTLDRLNTTDLVLMRLALYEAKFTD-VPAKIAVNEALQL 115
Query: 134 AHDFFYGDEPKFINAVLDK 152
AHDF KFIN +L+K
Sbjct: 116 AHDFTDDKSRKFINGILNK 134
>gi|257413800|ref|ZP_04744265.2| transcription antitermination factor NusB [Roseburia intestinalis
L1-82]
gi|257202253|gb|EEV00538.1| transcription antitermination factor NusB [Roseburia intestinalis
L1-82]
Length = 146
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 10/152 (6%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
IQ+ + + + R R + L++++ E D +
Sbjct: 5 IQEERMTEEKNMTRREIREQVFKMLFRVEFYNQ---------EEMSEQIALCEDDACNWK 55
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + + + ++ + ID I+ +E W R+ + +++R V E++ VP
Sbjct: 56 EKDKTYIFEKVEKISEKLEEIDAKINEV-SEGWKTGRMGKVDLTLIRLAVYEMLYEEDVP 114
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+V I+E V +A + + P F+N VL K+
Sbjct: 115 AKVAINEAVELAKQYGTDNSPSFVNGVLAKLV 146
>gi|56708465|ref|YP_170361.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670936|ref|YP_667493.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis FSC198]
gi|224457622|ref|ZP_03666095.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371089|ref|ZP_04987091.1| N utilization substance protein B [Francisella tularensis subsp.
tularensis FSC033]
gi|254875309|ref|ZP_05248019.1| N utilization substance protein B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|54113219|gb|AAV29243.1| NT02FT2024 [synthetic construct]
gi|56604957|emb|CAG46051.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321269|emb|CAL09434.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis FSC198]
gi|151569329|gb|EDN34983.1| N utilization substance protein B [Francisella tularensis subsp.
tularensis FSC033]
gi|254841308|gb|EET19744.1| N utilization substance protein B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159666|gb|ADA79057.1| N utilisation substance protein B [Francisella tularensis subsp.
tularensis NE061598]
Length = 141
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRCEE 141
>gi|302561751|ref|ZP_07314093.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302479369|gb|EFL42462.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 334
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 1 MTIQDNK--KDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q + K K ++ R+ A +AL +D ++ +
Sbjct: 1 MSDQPRRPRKPAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ D +++G + R+ D ++++C+ +D + +L G +L+
Sbjct: 54 ENGDFEARDAALATELVYGTLRRQGTYDAVVAACVDR--PLREVDPPVLDVLSLGAHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL K+++ + V+
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKIAQDDLDGWLERVAPP 162
>gi|254373311|ref|ZP_04988799.1| N utilisation substance protein B [Francisella tularensis subsp.
novicida GA99-3549]
gi|254374776|ref|ZP_04990257.1| N utilization substance protein B [Francisella novicida GA99-3548]
gi|151571037|gb|EDN36691.1| N utilisation substance protein B [Francisella novicida GA99-3549]
gi|151572495|gb|EDN38149.1| N utilization substance protein B [Francisella novicida GA99-3548]
Length = 141
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKVQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|282850207|ref|ZP_06259586.1| transcription antitermination factor NusB [Veillonella parvula ATCC
17745]
gi|282579700|gb|EFB85104.1| transcription antitermination factor NusB [Veillonella parvula ATCC
17745]
Length = 134
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + + D + +++ +D +
Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTNQNDVQFPEGNIHKAMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
II GV+ + ID + + + LD + SILR V E+ + + I+
Sbjct: 47 NSIIEGVLSNVEAIDATLQPFCKSR-KVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A +F K INA+LD ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134
>gi|118497958|ref|YP_899008.1| transcription termination factor [Francisella tularensis subsp.
novicida U112]
gi|194323181|ref|ZP_03056965.1| transcription antitermination factor NusB [Francisella tularensis
subsp. novicida FTE]
gi|118423864|gb|ABK90254.1| transcription termination factor [Francisella novicida U112]
gi|194322545|gb|EDX20025.1| transcription antitermination factor NusB [Francisella tularensis
subsp. novicida FTE]
Length = 141
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|323141164|ref|ZP_08076065.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium sp. YIT 12067]
gi|322414307|gb|EFY05125.1| ribosomal RNA small subunit methyltransferase B
[Phascolarctobacterium sp. YIT 12067]
Length = 453
Score = 83.7 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + S +D +++G + +D ++ C++ ++ +
Sbjct: 29 AYTNIALNQYLRGSRLSDLDRRLATELVYGTVKASGTLDWYLAQCVSR--PLDKVAGDIL 86
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ILR +L+ +P ++E V +A + KF+N VL + RK+E
Sbjct: 87 AILRISTYQLLYMTRIPASAAVNEAVKLARSVSHEGSAKFVNGVLRGLLRKQEA 140
>gi|291549490|emb|CBL25752.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
torques L2-14]
Length = 463
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L +I G + +I+ + + + + ++ G ++
Sbjct: 8 REVVLEILMEITENGAYSHKILGDVLSKY----------QYLEKRERAFITRVVEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +++ ++ ++ ++LR+ V +L SVP + SE V +A +
Sbjct: 58 MIEIDYILNQISKT--KVKKMKPVIRNLLRSSVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
++N VL V RK +
Sbjct: 116 SGLRGYVNGVLRNVVRKMDEIE 137
>gi|259507351|ref|ZP_05750251.1| N utilization substance protein B family protein (protein NusB)
[Corynebacterium efficiens YS-314]
gi|259165062|gb|EEW49616.1| N utilization substance protein B family protein (protein NusB)
[Corynebacterium efficiens YS-314]
Length = 167
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+ L++ + II + +T D + E+ II+GV I
Sbjct: 1 MDILFEAESRDVDPVAIIDDRKTLSNAVDP-------VVAPVAEYTEAIINGVAVELDTI 53
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D L+S + + W RL + ++LR E++ VPV + E V IA +
Sbjct: 54 DDLLSEHIADTWLLERLPSVDRAVLRVACWEMLYNPDVPVTTAVVEAVEIASQYSTDKAG 113
Query: 144 KFINAVLDKVSRKEEI--KRSGCVSAIT 169
+INA LD ++ K + +R+ A++
Sbjct: 114 AYINATLDNMASKVDELRERAANPGAVS 141
>gi|293610510|ref|ZP_06692810.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826854|gb|EFF85219.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123924|gb|ADY83447.1| transcription termination, L factor (N utilization substance
protein B) [Acinetobacter calcoaceticus PHEA-2]
Length = 149
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + S LD + + LR G EL + VP V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLSSTLRSAE 144
>gi|294628319|ref|ZP_06706879.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831652|gb|EFF90001.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 335
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 14/172 (8%)
Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ + + K R + R+ A AL +D ++ +
Sbjct: 1 MSDTSRRPRRPAKPYRRPQKDPVRILAFDALRAVDERDAYANLVLPPLLR-------KAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + D +++G + R+ D +I++C+ +D + +L G +L+
Sbjct: 54 EKGDFDARDAALATELVYGTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV++ + V+
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQHDLDGWLEKVAPP 162
>gi|218132225|ref|ZP_03461029.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
43243]
gi|217992884|gb|EEC58884.1| hypothetical protein BACPEC_00082 [Bacteroides pectinophilus ATCC
43243]
Length = 135
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+++ R R L++++ S LD + +
Sbjct: 1 MEIKMTRHTIRKHIFSMLFRVEFHDSS---------EISSQDGLYLDTIDNITDEERGYM 51
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ +++ ID + ++E W R+ + +ILR V EL+ +P V I+E
Sbjct: 52 EKRVSAIVELLPEIDKKL-ESVSEGWKLERMGKVELTILRLAVYELLYDDDIPANVAINE 110
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
V +A + P F+N +L K+
Sbjct: 111 AVELAKVYGGDTSPAFVNGILAKLL 135
>gi|303255410|ref|ZP_07341476.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS455]
gi|303259505|ref|ZP_07345482.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP-BS293]
gi|303262368|ref|ZP_07348311.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP14-BS292]
gi|303264786|ref|ZP_07350703.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS397]
gi|303266625|ref|ZP_07352510.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS457]
gi|303268858|ref|ZP_07354645.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS458]
gi|301801342|emb|CBW34025.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae INV200]
gi|302597655|gb|EFL64735.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS455]
gi|302636467|gb|EFL66959.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP14-BS292]
gi|302639439|gb|EFL69897.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP-BS293]
gi|302641639|gb|EFL71999.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS458]
gi|302643869|gb|EFL74131.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS457]
gi|302645653|gb|EFL75883.1| transcription antitermination protein NusB [Streptococcus
pneumoniae BS397]
Length = 140
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTHDREYTDVQLP---------AFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V I+E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAINEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|327458960|gb|EGF05308.1| N utilization substance protein B [Streptococcus sanguinis SK1057]
Length = 143
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEGDLVEAC-----RFAYSYDKDEGADKATEADIPAFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|257899950|ref|ZP_05679603.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
gi|257837862|gb|EEV62936.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com15]
Length = 452
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|228987373|ref|ZP_04147493.1| N utilization substance protein B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229140916|ref|ZP_04269460.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
gi|229157781|ref|ZP_04285856.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
gi|229186425|ref|ZP_04313589.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
gi|229198309|ref|ZP_04325016.1| N utilization substance protein B [Bacillus cereus m1293]
gi|228585188|gb|EEK43299.1| N utilization substance protein B [Bacillus cereus m1293]
gi|228597052|gb|EEK54708.1| N utilization substance protein B [Bacillus cereus BGSC 6E1]
gi|228625738|gb|EEK82490.1| N utilization substance protein B [Bacillus cereus ATCC 4342]
gi|228642492|gb|EEK98779.1| N utilization substance protein B [Bacillus cereus BDRD-ST26]
gi|228772345|gb|EEM20791.1| N utilization substance protein B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 120
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
+QALYQ+DI G + ++ VE+ + E+ ++ G ++ K+
Sbjct: 1 MQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESLVVGFVENKE 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
ID I L + W R+ ++ SILR V E+ +P V I+E + IA F +
Sbjct: 46 VIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEE 104
Query: 142 EPKFINAVLDKV 153
+FIN VL +
Sbjct: 105 SRRFINGVLSNI 116
>gi|89256034|ref|YP_513396.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica LVS]
gi|115314512|ref|YP_763235.1| N utilization substance protein B [Francisella tularensis subsp.
holarctica OSU18]
gi|156502045|ref|YP_001428109.1| transcription antitermination factor [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010215|ref|ZP_02275146.1| transcription antitermination factor NusB [Francisella tularensis
subsp. holarctica FSC200]
gi|254367376|ref|ZP_04983402.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica 257]
gi|290953937|ref|ZP_06558558.1| transcription antitermination factor [Francisella tularensis subsp.
holarctica URFT1]
gi|295312686|ref|ZP_06803431.1| transcription antitermination factor [Francisella tularensis subsp.
holarctica URFT1]
gi|89143865|emb|CAJ79083.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica LVS]
gi|115129411|gb|ABI82598.1| N utilization substance protein B [Francisella tularensis subsp.
holarctica OSU18]
gi|134253192|gb|EBA52286.1| N utilisation substance protein B [Francisella tularensis subsp.
holarctica 257]
gi|156252648|gb|ABU61154.1| transcription antitermination factor [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 141
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + +L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYVVLQVAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRSEE 141
>gi|148284859|ref|YP_001248949.1| transcription antitermination protein NusB [Orientia tsutsugamushi
str. Boryong]
gi|146740298|emb|CAM80679.1| N utilization substance protein B [Orientia tsutsugamushi str.
Boryong]
Length = 162
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 6/157 (3%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCST------TEIISEYETYRFCADTELDVESVYLH 63
+ + + I R+A++Q +Y I+ II+ Y+ D ELD
Sbjct: 5 MIKINTKTITRIASIQGVYSYQILDSEPTIDSIIDFIITYYKDKSSLEDLELDSAIPCFK 64
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ + +++ +D + ID++ISS L + W L +IL SILR EL S P
Sbjct: 65 LRTNYLTKLVNETIDNLETIDMIISSYLADNWQIKDLHLILLSILRVATCELKFFTSTPY 124
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+V+I+E+ IA DF E F+N++L+K+S
Sbjct: 125 KVVINEFTNIASDFVKESEIGFVNSLLEKISFNVRTN 161
>gi|325661675|ref|ZP_08150298.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471928|gb|EGC75143.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 134
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + L++I+ E ++ Y A + E+ R
Sbjct: 3 RSELREHIFRILFRIEFQPKEEMEEQLALYLEELESA----------KDTEKEYIRTKYA 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ + ID I++ +T W SR+ + +ILR V E+ VP V I+E V +A
Sbjct: 53 AIAEKVEMIDEKINASVTG-WKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ + P FIN VL K+
Sbjct: 112 KRYGGEESPSFINGVLGKIV 131
>gi|269795116|ref|YP_003314571.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
gi|269097301|gb|ACZ21737.1| tRNA/rRNA cytosine-C5-methylase [Sanguibacter keddieii DSM 10542]
Length = 505
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 22/172 (12%)
Query: 7 KKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ L S RR ARL A L ++ ++ R
Sbjct: 34 RGSLAPSERRKGTDSARLVAFDVLREVADSDAYANLVLPPMLRSR-----------GISG 82
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + +G + + D +I C+ ++D + +LR G +L+ VP
Sbjct: 83 RDAAFATELAYGTLRLRGRYDAIIGECVDR--PLDKIDAPVLDVLRLGAHQLLGMR-VPS 139
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAITQ 170
+SE V +A D +F+NAVL K+SR E + I +
Sbjct: 140 HAAVSETVGLARDRVGAGSAQFVNAVLRKISRTELEEWLETVEAAQPDEIAK 191
>gi|118444654|ref|YP_878315.1| sun protein [Clostridium novyi NT]
gi|118135110|gb|ABK62154.1| sun protein [Clostridium novyi NT]
Length = 443
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 13/143 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V L E++ Y + ++ D I++G +
Sbjct: 3 KARKICVDIL-----------EVVFNKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTI 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ID ++++ L + LD + +ILR V ++ +P ++E V IA
Sbjct: 52 KYKYTIDTILNNFLKKG--IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKE 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
K +N VL R + K
Sbjct: 110 KSVGASKLVNGVLRNYLRNLDKK 132
>gi|312898700|ref|ZP_07758090.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
gi|310620619|gb|EFQ04189.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
micronuciformis F0359]
Length = 441
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA +L + G Y +++ + + D ++ +++G +
Sbjct: 4 REAAFHSLIAVCKDG-----------AYSNIVVSKIIQKEKFTDRDRRFYTELVYGTLRS 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++D +I + + LD + ++LR G+ +L VP +E V +A F
Sbjct: 53 LNYVDYIIGILSSR--KKNSLDPVCLAVLRMGLYQLFFMDKVPPSAACNEAVKLARRFGN 110
Query: 140 GDEPKFINAVLDKVSRKEE 158
KF+NA+L R++E
Sbjct: 111 EGMAKFVNALLRNSLRQKE 129
>gi|295108281|emb|CBL22234.1| transcription antitermination factor NusB [Ruminococcus obeum
A2-162]
Length = 171
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 12/157 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R + L+ + E+ + Y D E +
Sbjct: 2 RRSEQREHIFKLLFMTQFN--TENEMPEQLSIYFEGL-------GEVSEKDQEAIQQKYD 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+++ + ID I + + W +R++ + + LR V E+ VPV V I+E V +A
Sbjct: 53 HILEHLEEIDE-ILNDYSRGWKTTRMNRVDLTALRLAVYEMKMDEDVPVGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS--RKEEIKRSGCVSAIT 169
F D F+N VL K++ +K+ + T
Sbjct: 112 KLFGGEDSGSFVNGVLGKIASGKKDSGEEPKHPHRQT 148
>gi|310779261|ref|YP_003967594.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
gi|309748584|gb|ADO83246.1| NusB antitermination factor [Ilyobacter polytropus DSM 2926]
Length = 132
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR + L++ ++ TE++ ++ + + E+ +
Sbjct: 2 SRKTAREEFFKLLFEAELNEVDATEVLEDFIS---------RDDFKLSKAGQEFLERYAN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + K I I +T W+ R+ + ++L+ EL++ E++I+E V +A
Sbjct: 53 GVTENKAEIQRTIDENMTG-WTLDRIGNVERTLLKFATYELLKEDVG-YEIVINEIVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ +FIN VL K+ K
Sbjct: 111 KKYGEEKSHEFINGVLAKIVNK 132
>gi|297583987|ref|YP_003699767.1| sun protein [Bacillus selenitireducens MLS10]
gi|297142444|gb|ADH99201.1| sun protein [Bacillus selenitireducens MLS10]
Length = 457
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 24/169 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT+ + ++ R AA+ L IS+ + Y E ++
Sbjct: 1 MTVNQSPGNV---------RDAALDVL-----------IKISKDQAYSHLLLNETVMKKK 40
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD+ I++G + ++ +D +S+ ++ ++L+ + +LR V ++
Sbjct: 41 IKEVDVALLTEIVYGTLQHQRRLDYYVSAFSKKE--LNKLENWVLILLRLSVYQMHFLDR 98
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSGCVSA 167
VP I++E V IA + +N +L V R+ +++
Sbjct: 99 VPDHAILNEAVRIASKRGHKGIAGMVNGILRSVQREGVPDLEEIEDPKE 147
>gi|15900351|ref|NP_344955.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TIGR4]
gi|111657914|ref|ZP_01408625.1| hypothetical protein SpneT_02000923 [Streptococcus pneumoniae
TIGR4]
gi|116516227|ref|YP_815903.1| transcription antitermination protein NusB [Streptococcus
pneumoniae D39]
gi|148983827|ref|ZP_01817146.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP3-BS71]
gi|148988184|ref|ZP_01819647.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP6-BS73]
gi|148996835|ref|ZP_01824553.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP11-BS70]
gi|149003529|ref|ZP_01828403.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP14-BS69]
gi|149012182|ref|ZP_01833291.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP19-BS75]
gi|149023719|ref|ZP_01836199.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP23-BS72]
gi|168482670|ref|ZP_02707622.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1873-00]
gi|168490656|ref|ZP_02714799.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC0288-04]
gi|168495037|ref|ZP_02719180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC3059-06]
gi|169832898|ref|YP_001693937.1| transcription antitermination protein NusB [Streptococcus
pneumoniae Hungary19A-6]
gi|194396779|ref|YP_002037111.1| transcription antitermination protein NusB [Streptococcus
pneumoniae G54]
gi|221231296|ref|YP_002510448.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae ATCC 700669]
gi|225856159|ref|YP_002737670.1| transcription antitermination protein NusB [Streptococcus
pneumoniae P1031]
gi|225860454|ref|YP_002741963.1| transcription antitermination protein NusB [Streptococcus
pneumoniae Taiwan19F-14]
gi|237650354|ref|ZP_04524606.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CCRI 1974]
gi|237822042|ref|ZP_04597887.1| transcription antitermination protein NusB [Streptococcus
pneumoniae CCRI 1974M2]
gi|298230814|ref|ZP_06964495.1| transcription antitermination protein NusB [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254607|ref|ZP_06978193.1| transcription antitermination protein NusB [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502226|ref|YP_003724166.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TCH8431/19A]
gi|307067077|ref|YP_003876043.1| transcription termination factor [Streptococcus pneumoniae AP200]
gi|54037926|sp|P65583|NUSB_STRR6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|54041676|sp|P65582|NUSB_STRPN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|122279211|sp|Q04M45|NUSB_STRP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238688321|sp|B1I9M4|NUSB_STRPI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238690799|sp|B5E1P3|NUSB_STRP4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772658|sp|B8ZLJ7|NUSB_STRPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772661|sp|C1CIT2|NUSB_STRZP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|254772662|sp|C1CPU1|NUSB_STRZT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|14971902|gb|AAK74595.1| N utilization substance protein B [Streptococcus pneumoniae TIGR4]
gi|116076803|gb|ABJ54523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
D39]
gi|147757410|gb|EDK64449.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP11-BS70]
gi|147758465|gb|EDK65464.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP14-BS69]
gi|147763784|gb|EDK70718.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP19-BS75]
gi|147923974|gb|EDK75086.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP3-BS71]
gi|147926648|gb|EDK77721.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP6-BS73]
gi|147929656|gb|EDK80648.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP23-BS72]
gi|168995400|gb|ACA36012.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Hungary19A-6]
gi|172043807|gb|EDT51853.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1873-00]
gi|183575029|gb|EDT95557.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC0288-04]
gi|183575089|gb|EDT95617.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC3059-06]
gi|194356446|gb|ACF54894.1| transcription antitermination factor NusB [Streptococcus pneumoniae
G54]
gi|220673756|emb|CAR68255.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae ATCC 700669]
gi|225725650|gb|ACO21502.1| transcription antitermination factor NusB [Streptococcus pneumoniae
P1031]
gi|225726476|gb|ACO22327.1| transcription antitermination factor NusB [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237821|gb|ADI68952.1| transcription antitermination protein NusB [Streptococcus
pneumoniae TCH8431/19A]
gi|301799529|emb|CBW32077.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae OXC141]
gi|306408614|gb|ADM84041.1| Transcription termination factor [Streptococcus pneumoniae AP200]
gi|327390840|gb|EGE89180.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA04375]
gi|332202338|gb|EGJ16407.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41317]
gi|332203602|gb|EGJ17669.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47368]
gi|332204458|gb|EGJ18523.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA47901]
Length = 140
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDTDVQLPAFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|292670256|ref|ZP_06603682.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
gi|292648208|gb|EFF66180.1| RNA methyltransferase Sun [Selenomonas noxia ATCC 43541]
Length = 448
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 16/150 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A+Q + ++ G Y A E + D + +++GV+
Sbjct: 11 RVRELAMQTILRVHGAG-----------AYANVALAETLRAARPTERDRRFLTELVYGVV 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
ID +I ++ + + ++LR G ++ +PV + V +A +
Sbjct: 60 KAGDTIDYMIGKYVS---DLRKAQPAIRTLLRLGFYQIFFMDKIPVSAACNTAVELAKKY 116
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+N VL R+ E R+
Sbjct: 117 GRRGAASFVNGVLRTALREPE--RAALPKG 144
>gi|269467885|gb|EEZ79624.1| transcription termination factor [uncultured SUP05 cluster
bacterium]
Length = 142
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 62/152 (40%), Gaps = 14/152 (9%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + +R VQA+YQ + G +I ++ + +F
Sbjct: 1 MAFKTPKQRSRERVVQAVYQYLVSGGEVLQIEQQFLN------------QKEGKISKAFF 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ ++ + +D LI+ ++ + L + ++L GV EL VP +V+I+E
Sbjct: 49 SNLFINILKNRIELDELIAPTISRETD--ELGSVEHAVLYLGVYELQNSIEVPYKVVINE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ IA + K IN+ LD++++
Sbjct: 107 ALEIAKLYGAEGAFKLINSSLDQLAKDLRELE 138
>gi|299768336|ref|YP_003730362.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
gi|298698424|gb|ADI88989.1| transcription antitermination protein NusB [Acinetobacter sp. DR1]
Length = 149
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIALRD 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + S LD + + LR G EL + VP V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--LSALDGVELATLRLGAYELRDHLEVPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLSSTLRSAE 144
>gi|229135004|ref|ZP_04263810.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
gi|228648506|gb|EEL04535.1| N utilization substance protein B [Bacillus cereus BDRD-ST196]
Length = 120
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
+QALYQ+DI G + ++ VE+ + E+ ++ G +D K+
Sbjct: 1 MQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESLVVGFVDNKE 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
ID I L + W R+ ++ SILR V E+ +P V I+E + IA F +
Sbjct: 46 EIDAAIRQNLKK-WKLERISIVDRSILRVAVCEMKYMEEIPHNVTINEAIEIAKTFGDEE 104
Query: 142 EPKFINAVLDKV 153
+FIN VL +
Sbjct: 105 SRRFINGVLSNI 116
>gi|1772501|emb|CAA71351.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
Length = 240
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++AL +++ Y + + + +++
Sbjct: 2 KKTSVRDIALEALIKLEQNQ-----------AYSNLLLKSVIKSNELSDQNRGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + K +D ++ + + + +LR + ++ +P I E V IA
Sbjct: 51 GTLQNKIALDYMLKPFINKPQKVKPW---VIQLLRLSLYQMEYLEKIPDRAAIHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ F+N VL + R+
Sbjct: 108 KIRGHKGIASFVNGVLRSIQRE 129
>gi|225018695|ref|ZP_03707887.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
gi|224948423|gb|EEG29632.1| hypothetical protein CLOSTMETH_02645 [Clostridium methylpentosum
DSM 5476]
Length = 441
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 14/142 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ AL ++D G Y A + S D ++ + +GV
Sbjct: 4 RTARDLALSALLKMDKQG-----------AYSNLAFDGMLSSSSLSPRDRDFAAKLFYGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ K +D +I+S T ++ + +ILR G+ ++ ++E V +
Sbjct: 53 LETKITLDYIIASYAT--MKPEKISSDVRNILRLGLYQIKYLDLEDFAA-VNESVNLVKL 109
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
F+NA+L R +
Sbjct: 110 RGKKSASGFVNAILRAFLRDGK 131
>gi|324992055|gb|EGC23977.1| N utilization substance protein B [Streptococcus sanguinis SK405]
gi|324994148|gb|EGC26062.1| N utilization substance protein B [Streptococcus sanguinis SK678]
gi|327459357|gb|EGF05703.1| N utilization substance protein B [Streptococcus sanguinis SK1]
gi|327490573|gb|EGF22354.1| N utilization substance protein B [Streptococcus sanguinis SK1058]
Length = 143
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + Y + D E D + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG---DLVEACRFAYSYDKDEEADKAAEADIP--AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L K
Sbjct: 121 SKQFSDEKSSKFINGILSKFI 141
>gi|292670715|ref|ZP_06604141.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
43541]
gi|292647661|gb|EFF65633.1| transcription antitermination factor NusB [Selenomonas noxia ATCC
43541]
Length = 138
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR AA+ L+Q++ + E + + + DL + ++H
Sbjct: 2 SRRSAREAALLTLFQLEF---DADKACEERVSDLAIDEVD-----GITEEDLPYAHNLVH 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV-PVEVIISEYVCI 133
G ID I + ++W R+ + +++R E+ V I+E V +
Sbjct: 54 GTRSFLSEIDAEI-ERMAKEWKLRRMAAVDRNLIRMAYYEMRYQEERIDPPVAINEAVEL 112
Query: 134 AHDFFYGDEPKFINAVLDKVSR 155
A + D +++N +L + +
Sbjct: 113 AKKYGSDDAGRYVNGILAAMQK 134
>gi|325690389|gb|EGD32393.1| N utilization substance protein B [Streptococcus sanguinis SK115]
Length = 143
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + Y + D E + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG---DLVEACRFAYSYDKDEEACKAAEADIP--AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|187931389|ref|YP_001891373.1| transcription antitermination factor NusB [Francisella tularensis
subsp. mediasiatica FSC147]
gi|187712298|gb|ACD30595.1| transcription antitermination factor NusB [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 141
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSSNG--VESINYVDYAVLQVAIAELIECLENPYQVIIKEYVG 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|260553344|ref|ZP_05825958.1| transcription termination factor [Acinetobacter sp. RUH2624]
gi|260405181|gb|EEW98679.1| transcription termination factor [Acinetobacter sp. RUH2624]
Length = 149
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLSYYHELLTQVIAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + LD + + LR G EL + +P V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLSSTLRSAE 144
>gi|257888654|ref|ZP_05668307.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
gi|257824708|gb|EEV51640.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,141,733]
Length = 452
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|218778410|ref|YP_002429728.1| sun protein [Desulfatibacillum alkenivorans AK-01]
gi|218759794|gb|ACL02260.1| sun protein [Desulfatibacillum alkenivorans AK-01]
Length = 455
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K + +R+ A + L +++ ++ E D
Sbjct: 1 MKPPAGKDKSRITAARILDRLESGDQVLDVVLDRALD----------KEPGLTRKDRALV 50
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ + ID +ISS ++ + +ILR GV +L+ VP + +
Sbjct: 51 MALVYGVLRNRGRIDWIISSFSKT--KLKKIQPEILNILRMGVFQLLFLDRVPPALAVDS 108
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A KF+N +L V RK
Sbjct: 109 SVEMAKKAAPVFVSKFVNGLLRNVERKGR 137
>gi|149008214|ref|ZP_01831709.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP18-BS74]
gi|307126646|ref|YP_003878677.1| transcription antitermination factor NusB [Streptococcus pneumoniae
670-6B]
gi|147760358|gb|EDK67339.1| transcription antitermination protein NusB [Streptococcus
pneumoniae SP18-BS74]
gi|306483708|gb|ADM90577.1| transcription antitermination factor NusB [Streptococcus pneumoniae
670-6B]
gi|332076876|gb|EGI87338.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17545]
Length = 140
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTHDREYTDVQLP---------AFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|294791859|ref|ZP_06757007.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
gi|294457089|gb|EFG25451.1| transcription antitermination factor NusB [Veillonella sp. 6_1_27]
Length = 134
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + + D + +++ +D +
Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
II GV+ + ID + + + LD + SILR V E+ + + I+
Sbjct: 47 NSIIEGVLSNVEAIDATLQPFCKSR-KVANLDKVDRSILRIAVWEMTNKVEPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A DF K INA+LD ++ +
Sbjct: 106 EAIQLAKDFGSDASYKLINAILDAYNKSK 134
>gi|254423387|ref|ZP_05037105.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
gi|196190876|gb|EDX85840.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
PCC 7335]
Length = 491
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 10/159 (6%)
Query: 2 TIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
++ + K K++ + AR A +AL ID G +I T +
Sbjct: 17 SLSEPKVTPKIAKSKTAKPKTARQIAFEALRAIDQ-GAFADVVIDRKLK---GTQTGTQL 72
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D +++G + R++ +D LI S+ L ILR G +L
Sbjct: 73 GIQLSSQDKGLVTELVYGSVRRRRTLDALIDQFGKR--PASKQHRDLLQILRLGFYQLRY 130
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
VPV ++ V +A G +NA+L + +R+
Sbjct: 131 LDHVPVHAVVDTTVQLAKSQRLGKLSGVVNAMLRQYARE 169
>gi|119487592|ref|ZP_01621202.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
gi|119455761|gb|EAW36897.1| Fmu, rRNA SAM-dependent methyltransferase [Lyngbya sp. PCC 8106]
Length = 450
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 13/146 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L +++ G + E ++ V+ +++G + R
Sbjct: 6 RQLAFIILREVERRGVYADIALD-----------ENLRKADLSAVNRRLTTELVYGCVRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D LI + + L IL G +L +P ++ V +A
Sbjct: 55 RRSLDALIDQF--AQKKSHQQPPDLRIILHLGFYQLYYLSQIPASAAVNTSVELAKTNGL 112
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCV 165
F+N +L + R++E +
Sbjct: 113 SGLSGFVNGILREYLRQQEKQTQNRP 138
>gi|319649620|ref|ZP_08003776.1| sun protein [Bacillus sp. 2_A_57_CT2]
gi|317398782|gb|EFV79464.1| sun protein [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A++ L E I + ++Y ++ D+ + +
Sbjct: 5 KKKNVRETALELL-----------EAIEKNQSYSNLLLNNAIKKNEIDQKDIGLLTELTY 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + R+ +D + L + +LR + +++ +P I E V IA
Sbjct: 54 GTLQRRMTLDFYLQPFLAGNKKIESW---VNQLLRLTLYQMVFLDKIPDRAAIFEAVEIA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ + +N VL V RK
Sbjct: 111 KRWGHKGISGMVNGVLRNVQRK 132
>gi|258645389|ref|ZP_05732858.1| transcription antitermination factor NusB [Dialister invisus DSM
15470]
gi|260402739|gb|EEW96286.1| transcription antitermination factor NusB [Dialister invisus DSM
15470]
Length = 133
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A++ LY +I + A+ D+ + ++
Sbjct: 2 SRSKAREHALKVLYAKEINPNT--------------AELSADISDALSEKGKSFSDFLVE 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC--HSVPVEVIISEYVC 132
V + ID I L + WS S+L+++ +ILR + E +VII+E V
Sbjct: 48 QVQLHRDEIDGEIVRFLKK-WSLSQLNIVDKNILRIAIAEFNYTYEDKADRKVIINEAVE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + +FIN +L V+ ++
Sbjct: 107 LAKVYGGENSYRFINGILSAVTGEKN 132
>gi|331084732|ref|ZP_08333820.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330410826|gb|EGG90248.1| transcription antitermination factor NusB [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 134
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Query: 16 RGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + L++I+ E ++ Y A + E+ R
Sbjct: 3 RSELREHIFRILFRIEFQPKEEMEEQLALYLEELESA----------KDTEKEYIRTKYA 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ + ID I++ +T W SR+ + +ILR V E+ VP V I+E V +A
Sbjct: 53 AIAEKVEMIDEKINASVTG-WKTSRMGKVDLTILRLAVYEIEWDEEVPQGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ + P FIN VL K+
Sbjct: 112 KRYGGEESPSFINGVLGKIVNSR 134
>gi|310828894|ref|YP_003961251.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
gi|308740628|gb|ADO38288.1| hypothetical protein ELI_3326 [Eubacterium limosum KIST612]
Length = 441
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AV+ L ++ G Y ++ E+ Y D + I++G +
Sbjct: 2 KIREQAVKTLLRVSREG-----------AYSNLETKKVLGENHYKEEDRGLYLNIVYGTL 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ++D L+ +++ ++LD + ILR V ++ +P ++E V I
Sbjct: 51 QNKLYLDYLLKKHISK--DLNKLDPEVLEILRIAVYQIYFLDKIPSYAAVNESVEITGRI 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162
F+N VL + R +E +
Sbjct: 109 K-PKARGFVNGVLRNILRSKETDEA 132
>gi|167760433|ref|ZP_02432560.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
gi|167661932|gb|EDS06062.1| hypothetical protein CLOSCI_02807 [Clostridium scindens ATCC 35704]
Length = 436
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L QI G + + + + +++G ++
Sbjct: 8 RELVLDILLQITRDGEYSHIALKNVLDKY----------QYLDKKERAFITRVVNGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ ++ ++ I+R+ V +L SVP +++E V +A +
Sbjct: 58 MIEIDYIINQFSKV--KVQKMKPVIRMIIRSAVYQLKYMDSVPDSAVLNEAVKLASKRGF 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL VSR E
Sbjct: 116 STLKGFVNGVLRSVSRNLE 134
>gi|69245428|ref|ZP_00603423.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257879839|ref|ZP_05659492.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257891680|ref|ZP_05671333.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257894155|ref|ZP_05673808.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|258614266|ref|ZP_05712036.1| Sun protein [Enterococcus faecium DO]
gi|260559512|ref|ZP_05831693.1| fmu [Enterococcus faecium C68]
gi|293563686|ref|ZP_06678127.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|293570098|ref|ZP_06681178.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|314938230|ref|ZP_07845530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|314943127|ref|ZP_07849925.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|314949324|ref|ZP_07852666.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
gi|314952258|ref|ZP_07855272.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|314992114|ref|ZP_07857564.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|314996296|ref|ZP_07861352.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|68195810|gb|EAN10246.1| Fmu, rRNA SAM-dependent methyltransferase [Enterococcus faecium DO]
gi|257814067|gb|EEV42825.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,230,933]
gi|257828040|gb|EEV54666.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,410]
gi|257830534|gb|EEV57141.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,408]
gi|260074611|gb|EEW62932.1| fmu [Enterococcus faecium C68]
gi|291587470|gb|EFF19354.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1071]
gi|291604370|gb|EFF33863.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1162]
gi|313589540|gb|EFR68385.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a01]
gi|313593328|gb|EFR72173.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133B]
gi|313595600|gb|EFR74445.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133A]
gi|313598135|gb|EFR76980.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133C]
gi|313642426|gb|EFS07006.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0133a04]
gi|313644273|gb|EFS08853.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium TX0082]
Length = 452
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|325697632|gb|EGD39517.1| N utilization substance protein B [Streptococcus sanguinis SK160]
Length = 143
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G E +Y + + E+ + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG-DLVEACRFAYSYDKDEEADKVAEADIP----AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L K
Sbjct: 121 SKQFSDEKSSKFINGILSKFI 141
>gi|228941343|ref|ZP_04103895.1| N utilization substance protein B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954468|ref|ZP_04116493.1| N utilization substance protein B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960450|ref|ZP_04122101.1| N utilization substance protein B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228980868|ref|ZP_04141172.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|229047878|ref|ZP_04193454.1| N utilization substance protein B [Bacillus cereus AH676]
gi|229071689|ref|ZP_04204905.1| N utilization substance protein B [Bacillus cereus F65185]
gi|229081441|ref|ZP_04213941.1| N utilization substance protein B [Bacillus cereus Rock4-2]
gi|229111657|ref|ZP_04241207.1| N utilization substance protein B [Bacillus cereus Rock1-15]
gi|229129462|ref|ZP_04258433.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
gi|229146757|ref|ZP_04275122.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
gi|229152384|ref|ZP_04280576.1| N utilization substance protein B [Bacillus cereus m1550]
gi|229163128|ref|ZP_04291084.1| N utilization substance protein B [Bacillus cereus R309803]
gi|229180462|ref|ZP_04307804.1| N utilization substance protein B [Bacillus cereus 172560W]
gi|229192394|ref|ZP_04319357.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
gi|228590971|gb|EEK48827.1| N utilization substance protein B [Bacillus cereus ATCC 10876]
gi|228602886|gb|EEK60365.1| N utilization substance protein B [Bacillus cereus 172560W]
gi|228620534|gb|EEK77404.1| N utilization substance protein B [Bacillus cereus R309803]
gi|228630992|gb|EEK87629.1| N utilization substance protein B [Bacillus cereus m1550]
gi|228636585|gb|EEK93050.1| N utilization substance protein B [Bacillus cereus BDRD-ST24]
gi|228654067|gb|EEL09934.1| N utilization substance protein B [Bacillus cereus BDRD-Cer4]
gi|228671792|gb|EEL27086.1| N utilization substance protein B [Bacillus cereus Rock1-15]
gi|228701856|gb|EEL54342.1| N utilization substance protein B [Bacillus cereus Rock4-2]
gi|228711420|gb|EEL63379.1| N utilization substance protein B [Bacillus cereus F65185]
gi|228723335|gb|EEL74704.1| N utilization substance protein B [Bacillus cereus AH676]
gi|228778804|gb|EEM27067.1| N utilization substance protein B [Bacillus thuringiensis Bt407]
gi|228799214|gb|EEM46180.1| N utilization substance protein B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805125|gb|EEM51719.1| N utilization substance protein B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818269|gb|EEM64342.1| N utilization substance protein B [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 120
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
+QALYQ+DI G + ++ VE+ + E+ ++ G ++ K+
Sbjct: 1 MQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESLVVGFVENKE 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
ID I L + W R+ ++ SILR V E+ +P V I+E + IA F +
Sbjct: 46 AIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEE 104
Query: 142 EPKFINAVLDKV 153
+FIN VL +
Sbjct: 105 SRRFINGVLSNI 116
>gi|295094725|emb|CBK83816.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus sp.
ART55/1]
Length = 445
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 12/145 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R + L I+ + + D + ++ GV
Sbjct: 3 TKTREVVLTTLLDIEKNHTFSNIALGTAL----------RANQFMSKQDRAYITRMVEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ +D +I+ ++ ++ +LR G EL SVP + V +A D
Sbjct: 53 TEQRIKLDYIINQFSKT--KVNKCKPLIRCVLRMGTYELFFMDSVPDSAACNLSVKLAVD 110
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
+G F+N VL ++R + +
Sbjct: 111 HGFGSLRGFVNGVLRNIARNRDGIK 135
>gi|325693662|gb|EGD35581.1| N utilization substance protein B [Streptococcus sanguinis SK150]
Length = 143
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + D ++ + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEGDLVEAC-----RFAYSYDKDEDADNAAEADIPAFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|319789884|ref|YP_004151517.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
gi|317114386|gb|ADU96876.1| NusB antitermination factor [Thermovibrio ammonificans HB-1]
Length = 142
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ + AR A +YQ+D+ E+ Y + E +
Sbjct: 5 NREKKKAREHACLIMYQVDVGNLPLKEVTENYWSDF----------GKEKEEIKELSEYL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ + +D I L + W RL + SILR E++ P E +I++ V
Sbjct: 55 VKKTIEHLEEVDRAIGKHLKKGWVIERLLPMDRSILRVASYEILNEEISPPEAVINDAVE 114
Query: 133 IAHDFF-YGDEPKFINAVLDKVSRK 156
IA + PKFINA+LDKV R
Sbjct: 115 IAKSYGEDEKSPKFINAILDKVKRD 139
>gi|227542181|ref|ZP_03972230.1| transcription antitermination protein NusB [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182010|gb|EEI62982.1| transcription antitermination protein NusB [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 342
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + R AR A + L++ + E+ E +
Sbjct: 1 MSENNT---HSKHGARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGTEP------- 50
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC- 118
+ R II GV ID I L + W+F RL + ++LR EL+
Sbjct: 51 VTAPVRPYTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNA 110
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+VP + +++ V + D P ++NAVLD + + E
Sbjct: 111 SNVPQKTAVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++++ R AAV+ L E I + ++Y ++ D+
Sbjct: 1 MANK--NVREAAVELL-----------EAIEKNQSYSNLLLNSSIKKNDISSKDVGLLTE 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK +D + L + +LR ++I +P I E V
Sbjct: 48 LVYGTLQRKMTLDYQMEPFLKNPKKLESW---VRQLLRITFYQMIYLDKIPDRAAIYEAV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + +N VL + R+
Sbjct: 105 EIAKRKGHKGISGMVNGVLRSLQRQ 129
>gi|212716890|ref|ZP_03325018.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
16992]
gi|225350765|ref|ZP_03741788.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212660175|gb|EEB20750.1| hypothetical protein BIFCAT_01834 [Bifidobacterium catenulatum DSM
16992]
gi|225158221|gb|EEG71463.1| hypothetical protein BIFPSEUDO_02334 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 147
Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G E + E+ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKGQDI-----------LSLLAERIEQPGAQTPLPEYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + ID + + W R+ ++ +ILR E++ VP V I E + +A
Sbjct: 52 VAEHIAAIDSTLDEH-STGWKVKRMGVVDRNILRIAAWEIMFNDDVPNMVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVL 150
+ P FI+ +L
Sbjct: 111 TLCDDESPAFIHGLL 125
>gi|333028379|ref|ZP_08456443.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
gi|332748231|gb|EGJ78672.1| putative RNA-binding Sun protein [Streptomyces sp. Tu6071]
Length = 486
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 4 QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+++ + R+ R+ A AL +D ++ E + +
Sbjct: 16 DSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGF 68
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D +++G + + D +I++C+ +D + +L G +L+ +
Sbjct: 69 DARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-I 125
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P +S V +A +F+NAVL ++SR + V+ +
Sbjct: 126 PTHAAVSATVELARVVLGDGRSRFVNAVLRRISRNDLDAWLAEVAPPFE 174
>gi|302517945|ref|ZP_07270287.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
gi|302426840|gb|EFK98655.1| RNA-binding Sun protein [Streptomyces sp. SPB78]
Length = 476
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 12/169 (7%)
Query: 4 QDNKKDLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+++ + R+ R+ A AL +D ++ E + +
Sbjct: 50 DSSRRRGRPHRAPRKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGF 102
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D +++G + + D +I++C+ +D + +L G +L+ +
Sbjct: 103 DARDAALATELVYGTLRGRGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-I 159
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P +S V +A +F+NAVL ++SR + V+ +
Sbjct: 160 PTHAAVSATVELARVVLGDGRSRFVNAVLRRISRNDLDAWLAEVAPPFE 208
>gi|261206663|ref|ZP_05921361.1| fmu [Enterococcus faecium TC 6]
gi|289565024|ref|ZP_06445478.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|294614916|ref|ZP_06694807.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
gi|260079156|gb|EEW66849.1| fmu [Enterococcus faecium TC 6]
gi|289163231|gb|EFD11077.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium D344SRF]
gi|291592202|gb|EFF23820.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1636]
Length = 452
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|227552686|ref|ZP_03982735.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257897390|ref|ZP_05677043.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|293378850|ref|ZP_06625005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
gi|227178181|gb|EEI59153.1| RNA methyltransferase [Enterococcus faecium TX1330]
gi|257833955|gb|EEV60376.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium Com12]
gi|292642391|gb|EFF60546.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium PC4.1]
Length = 452
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++S + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVASLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|225854005|ref|YP_002735517.1| transcription antitermination protein NusB [Streptococcus
pneumoniae JJA]
gi|254772660|sp|C1CCJ6|NUSB_STRZJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|225724174|gb|ACO20027.1| transcription antitermination factor NusB [Streptococcus pneumoniae
JJA]
Length = 140
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDTAVQLPAFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|317176809|dbj|BAJ54598.1| transcription antitermination protein NusB [Helicobacter pylori
F16]
Length = 138
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKLNEIDALIEPHLKD-WDFKRLGSMEKAILRLGTYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|306825791|ref|ZP_07459130.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432152|gb|EFM35129.1| transcription antitermination factor NusB [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 140
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDTDVQLPAFLTGLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A +F +FIN +L + +E+
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEEQ 140
>gi|227495454|ref|ZP_03925770.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831001|gb|EEH63384.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 180
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 7/148 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A+ +++ D G + + E + E+ II
Sbjct: 7 SSRTRARKRAIDTIFEADQRGRAESAA------GINLMLEERKEITAAQTPLPEYSIEII 60
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV D ID L+ T +FSRL + +ILR E+I +VP I E V I
Sbjct: 61 EGVRDHLIEIDDLL-DTHTTGRTFSRLPAVDRAILRVATWEIIWNETVPDITAIDEAVRI 119
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
D P +NA+LD V R + R
Sbjct: 120 TRKISTDDSPALVNAILDAVRRDSKNVR 147
>gi|56964082|ref|YP_175813.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
gi|56910325|dbj|BAD64852.1| RNA-binding protein Sun [Bacillus clausii KSM-K16]
Length = 447
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 14/154 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A+ AL +++ Y + D +++
Sbjct: 2 NRPSVREVALDALLKVEKNQ-----------AYSHLLLHSTLTNAGLDKRDSGLLTELVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + RK+ +D ++ L + + + +LR V +++ +P ++ E V IA
Sbjct: 51 GTIARKRTLDYYLAPFLKSG---KKRALWVDVLLRLSVYQMVFLDRIPDRAVVHEAVTIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+ + +N VL + R+ I
Sbjct: 108 NKRGHKGISGLVNGVLRSIQRQGLPNVDAIADPI 141
>gi|329938919|ref|ZP_08288293.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
griseoaurantiacus M045]
gi|329301804|gb|EGG45697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
griseoaurantiacus M045]
Length = 472
Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 65/172 (37%), Gaps = 14/172 (8%)
Query: 1 MTIQDNK--KDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q + K K R + R A +AL +D ++ +
Sbjct: 1 MSDQSRRPRKPGKPYRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLR-------KAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + D +++G + R+ D ++++C+ +D + +L G +L+
Sbjct: 54 EQDGFDGRDAALATELVYGTLRRQGTYDAILAACVDR--PLREVDPPVLDVLSLGAHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV+R + V+
Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVARHDLDGWLEQVAPP 162
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L I+ G Y + D I++G + R
Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNNAIQKGRLDGRDAALLTEIVYGTIQR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + + + +LR + +++ VP I E V IA +
Sbjct: 53 RDTLDYYLTPFLRKARRLEQW---VRVLLRLTLYQMVYLDRVPDHAAIFEAVEIAKRRGH 109
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 110 RGIASLVNGVLRTIGRE 126
>gi|268611642|ref|ZP_06145369.1| sun protein [Ruminococcus flavefaciens FD-1]
Length = 443
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y S D + + +GV++RK +D +++ + S+LD I+
Sbjct: 20 SYSNIQLDAGLKNSDLSPQDKRFCTALYYGVIERKITLDHILTGLSSR--PLSKLDSIII 77
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ILR G+ +L+ +VP ++E V +A F +NAVL RK +
Sbjct: 78 TILRCGIYQLLYMENVPDNAAVNESVKLAKKFGKTSASGMVNAVLRNFIRKGK 130
>gi|312134817|ref|YP_004002155.1| nusb antitermination factor [Caldicellulosiruptor owensensis OL]
gi|311774868|gb|ADQ04355.1| NusB antitermination factor [Caldicellulosiruptor owensensis OL]
Length = 134
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY S +II Y+ +R EL+ + + +D E+ ++ GV+ +Q I
Sbjct: 1 MKILYAYRFEDGS-QDIIEFYKKFR-----ELNQDEDFRDIDEEYLEKLLKGVIQNQQRI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI ++ W SRL M+ ++R V EL+ VPV V I E V +++ F P
Sbjct: 55 DSLIEKY-SKDWPLSRLPMVELELMRVAVYELLFEEDVPVSVAIDEAVDLSNIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|227488822|ref|ZP_03919138.1| transcription antitermination protein NusB [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091244|gb|EEI26556.1| transcription antitermination protein NusB [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 342
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + R AR A + L++ + E+ E +
Sbjct: 1 MSENNT---HSKHGARYKARRHAAEILFEAEARDIDPVEVTRTREELSHGPEP------- 50
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE-KWSFSRLDMILCSILRAGVLELIEC- 118
+ R II GV ID I L + W+F RL + ++LR EL+
Sbjct: 51 VTAPVRPYTREIIEGVAVNLDLIDFAIERELADTDWTFDRLPGVDRAVLRVATWELLFNA 110
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+VP + +++ V + D P ++NAVLD + + E
Sbjct: 111 SNVPQKTAVTQAVELVSQLSTDDSPAYVNAVLDAMWKNPE 150
>gi|163781900|ref|ZP_02176900.1| transcription antitermination protein NusB [Hydrogenivirga sp.
128-5-R1-1]
gi|159883120|gb|EDP76624.1| transcription antitermination protein NusB [Hydrogenivirga sp.
128-5-R1-1]
Length = 144
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR ++ LY+ DI G S I EY + + E+ ++
Sbjct: 4 RKKARENSLMVLYRWDIRGDSIDRIREEYVE----------EKGIKNREIREYMDKLLST 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V D+ ID LIS +E WSF RL I ++LR GV EL+ ++Y+ I
Sbjct: 54 VRDKLPEIDSLISEY-SEGWSFDRLGYIERNVLRLGVAELLYADPPDPGRAFNDYLDIVK 112
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ +F+N +L K+ ++ S +
Sbjct: 113 RYADRKAARFVNGILSKIYKEHRATSSAKRAG 144
>gi|329926565|ref|ZP_08280978.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
gi|328939106|gb|EGG35469.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus sp.
HGF5]
Length = 442
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y +S D +I+G + R +D + + + +L +
Sbjct: 12 AYSNLLLNSALQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKGVR--KLQPWVR 69
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++LR + +++ +P ++SE V +A + +N VL + R++E
Sbjct: 70 ALLRISLYQIVYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKET 123
>gi|261405800|ref|YP_003242041.1| sun protein [Paenibacillus sp. Y412MC10]
gi|261282263|gb|ACX64234.1| sun protein [Paenibacillus sp. Y412MC10]
Length = 442
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y +S D +I+G + R +D + + + +L +
Sbjct: 12 AYSNLLLNSALQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKGVR--KLQPWVR 69
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++LR + +++ +P ++SE V +A + +N VL + R++E
Sbjct: 70 ALLRISLYQIVYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQKET 123
>gi|294786532|ref|ZP_06751786.1| transcription antitermination factor NusB [Parascardovia
denticolens F0305]
gi|315226110|ref|ZP_07867898.1| transcription antitermination factor NusB [Parascardovia
denticolens DSM 10105]
gi|294485365|gb|EFG32999.1| transcription antitermination factor NusB [Parascardovia
denticolens F0305]
gi|315120242|gb|EFT83374.1| transcription antitermination factor NusB [Parascardovia
denticolens DSM 10105]
Length = 209
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 12/150 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AR A+ LY+ D G +++ E Y + +
Sbjct: 1 MARARTTARKRALNTLYEADEKGEEIVDLLDERLAY-----------PGAQTPLPPYAQE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ GV ++ +D + +E W R+ ++ +I R E+I VP +V I E +
Sbjct: 50 IVRGVASHRRTVDKALEEH-SEGWDVKRMHVLDRNIARMAAWEIIYNDDVPAKVAIDEAL 108
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+A + + P F++ +L + R E R
Sbjct: 109 TLAKAYSDDEAPHFLHGLLSAIERDAEQIR 138
>gi|169794295|ref|YP_001712088.1| transcription antitermination protein NusB [Acinetobacter baumannii
AYE]
gi|184159907|ref|YP_001848246.1| transcription antitermination protein NusB [Acinetobacter baumannii
ACICU]
gi|213159130|ref|YP_002321128.1| transcription antitermination factor NusB [Acinetobacter baumannii
AB0057]
gi|215481852|ref|YP_002324034.1| transcription antitermination factor NusB [Acinetobacter baumannii
AB307-0294]
gi|239502815|ref|ZP_04662125.1| transcription antitermination protein NusB [Acinetobacter baumannii
AB900]
gi|260557847|ref|ZP_05830060.1| transcription antitermination factor NusB [Acinetobacter baumannii
ATCC 19606]
gi|332850100|ref|ZP_08432487.1| transcription antitermination factor NusB [Acinetobacter baumannii
6013150]
gi|332871452|ref|ZP_08439969.1| transcription antitermination factor NusB [Acinetobacter baumannii
6013113]
gi|332873342|ref|ZP_08441296.1| transcription antitermination factor NusB [Acinetobacter baumannii
6014059]
gi|226737436|sp|B7GUW2|NUSB_ACIB3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|226737437|sp|B7I252|NUSB_ACIB5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238685542|sp|A3MA35|NUSB_ACIBT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238688080|sp|B0V9X4|NUSB_ACIBY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238691018|sp|B2I2B2|NUSB_ACIBC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169147222|emb|CAM85081.1| transcription termination, L factor (N utilization substance
protein B) [Acinetobacter baumannii AYE]
gi|183211501|gb|ACC58899.1| Transcription termination factor [Acinetobacter baumannii ACICU]
gi|193078716|gb|ABO13779.2| transcription termination L factor [Acinetobacter baumannii ATCC
17978]
gi|213058290|gb|ACJ43192.1| transcription antitermination factor NusB [Acinetobacter baumannii
AB0057]
gi|213988308|gb|ACJ58607.1| transcription antitermination factor NusB [Acinetobacter baumannii
AB307-0294]
gi|260408638|gb|EEX01943.1| transcription antitermination factor NusB [Acinetobacter baumannii
ATCC 19606]
gi|322509823|gb|ADX05277.1| nusB [Acinetobacter baumannii 1656-2]
gi|323519833|gb|ADX94214.1| transcription antitermination protein NusB [Acinetobacter baumannii
TCDC-AB0715]
gi|332730949|gb|EGJ62255.1| transcription antitermination factor NusB [Acinetobacter baumannii
6013150]
gi|332731489|gb|EGJ62779.1| transcription antitermination factor NusB [Acinetobacter baumannii
6013113]
gi|332738405|gb|EGJ69278.1| transcription antitermination factor NusB [Acinetobacter baumannii
6014059]
Length = 149
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + LD + + LR G EL + +P V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLSSTLRSAE 144
>gi|169634846|ref|YP_001708582.1| transcription antitermination protein NusB [Acinetobacter baumannii
SDF]
gi|238688150|sp|B0VPT9|NUSB_ACIBS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169153638|emb|CAP02830.1| transcription termination, L factor (N utilization substance
protein B) [Acinetobacter baumannii]
Length = 149
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + LD + + LR G EL + +P V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDKVSRKEEIKR 161
K+IN VLD++S
Sbjct: 125 SHKYINGVLDRLSSTLRSAE 144
>gi|46199062|ref|YP_004729.1| N utilization substance protein B-like protein [Thermus
thermophilus HB27]
gi|55981090|ref|YP_144387.1| N-utilization substance protein B [Thermus thermophilus HB8]
gi|81567694|sp|Q72JL6|NUSB_THET2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81600431|sp|Q5SJ93|NUSB_THET8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|46196686|gb|AAS81102.1| N utilization substance protein B-like protein [Thermus
thermophilus HB27]
gi|55772503|dbj|BAD70944.1| N-utilization substance protein B [Thermus thermophilus HB8]
Length = 151
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 4/154 (2%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A++AL+ + G E + + + R ++ G
Sbjct: 2 RRRARELAMRALFAHTVGGMGLEEAFQHALEEMGGEEEGYAE--PLDQEGVAFARRLLSG 59
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ +D ++ E W F ++ ++LR V E++ P E +I V IA+
Sbjct: 60 YKAHQEEVDRVLEET-VEGWDFRQMAKTDLAVLRLAVYEMLY-EPTPFEPLIEVAVKIAN 117
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+ F+N VL +V R+ V+
Sbjct: 118 RYGGEHSGSFVNGVLARVYRRVAAGELKTVAKEA 151
>gi|302550113|ref|ZP_07302455.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
viridochromogenes DSM 40736]
gi|302467731|gb|EFL30824.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
viridochromogenes DSM 40736]
Length = 472
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 14/172 (8%)
Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q + R R+ A +AL +D ++ +
Sbjct: 1 MSDQPRRTRPSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------KAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + D +++G + R+ D +I++C+ +D + +L G +L+
Sbjct: 54 EKDDFDARDAALATELVYGTLRRQGTYDAVIATCVDR--PLGEVDPPVLDVLSLGAHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV++ + V+
Sbjct: 112 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQHDLDGWLERVAPP 162
>gi|206602422|gb|EDZ38903.1| Transcription antitermination factor (NusB) [Leptospirillum sp.
Group II '5-way CG']
Length = 168
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 22/159 (13%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR+ +Q+L+ + + L FR + G
Sbjct: 22 HKARIEVLQSLFAGE----------------YLPGGPPPFTLTSTLPSQARLFRDRLGGT 65
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + S + WS R+ + +ILR G+ E++ VP V I E + +AH
Sbjct: 66 IREHRAEIDDTISRFSVDWSLDRMGRVDRNILRMGICEILFEPEVPFRVTIDESLELAHQ 125
Query: 137 FFYGDEPKFINAVLDKV------SRKEEIKRSGCVSAIT 169
F + +FIN +L ++ ++ + G +
Sbjct: 126 FSEPEAVRFINGILHRIGTELAPAKAYASQEDGSPQPES 164
>gi|294793720|ref|ZP_06758857.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
gi|294455290|gb|EFG23662.1| transcription antitermination factor NusB [Veillonella sp. 3_1_44]
Length = 134
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + + D + +++ +D +
Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
II GV+ + ID + + + LD + SILR V E+ + + I+
Sbjct: 47 NSIIEGVLSNVEAIDATLQPFCKSR-KVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A +F K INA+LD ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134
>gi|293553676|ref|ZP_06674300.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
gi|291602251|gb|EFF32479.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1039]
Length = 452
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|152993501|ref|YP_001359222.1| transcription antitermination protein NusB [Sulfurovum sp. NBC37-1]
gi|166215724|sp|A6QBK6|NUSB_SULNB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|151425362|dbj|BAF72865.1| transcription antitermination factor NusB [Sulfurovum sp. NBC37-1]
Length = 130
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V LY D+ + + E+ E + ++ +
Sbjct: 1 MATRHQARTAVVGLLYAYDLGNENIAK-----------FSDEILEEDKIRNKQRDFSHDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G ++ + +D I LT+ W + + + +ILR G E++ +II+E V
Sbjct: 50 FDGTIENLEMLDAEIEKHLTD-WDYDAIGRVEKAILRLGAYEILVAK-TDRAIIINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A P+FIN VLD + +
Sbjct: 108 LAKSLADEKSPQFINGVLDAIGK 130
>gi|315222311|ref|ZP_07864217.1| transcription antitermination factor NusB [Streptococcus anginosus
F0211]
gi|315188644|gb|EFU22353.1| transcription antitermination factor NusB [Streptococcus anginosus
F0211]
Length = 141
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A QAL ++ E RF + D+ + + ++ G
Sbjct: 9 RRELRERAFQALMSLEYEK-------DIVEACRFAYLYDKDMTNDSDVEIPAFLLNLVTG 61
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V K +D +S L E W+ RL +I +ILR G+ E+ E P V I+E + ++
Sbjct: 62 VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFD-TPQLVAINEAIELSK 120
Query: 136 DFFYGDEPKFINAVLDKVS 154
F KFIN +L K
Sbjct: 121 KFSDEKSSKFINGILSKFV 139
>gi|208779634|ref|ZP_03246979.1| transcription antitermination factor NusB [Francisella novicida
FTG]
gi|208744595|gb|EDZ90894.1| transcription antitermination factor NusB [Francisella novicida
FTG]
Length = 141
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL AVQALYQ I + +E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYAVQALYQKKIADNTFSELKIQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I ++ + ++L+ + ELIEC P +VII EYV
Sbjct: 55 IDAVKTNQDTIDKYIKENSNNG--VESINYVDYAVLQVAIAELIECFENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KFINAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFINAVLQNLAKSIRGEE 141
>gi|324990231|gb|EGC22169.1| N utilization substance protein B [Streptococcus sanguinis SK353]
gi|325688019|gb|EGD30038.1| N utilization substance protein B [Streptococcus sanguinis SK72]
Length = 143
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + Y + D E D + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG---DLVEACRFAYSYDKDEETDKAAEADIP--AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|297617049|ref|YP_003702208.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
gi|297144886|gb|ADI01643.1| sun protein [Syntrophothermus lipocalidus DSM 12680]
Length = 460
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 54/141 (38%), Gaps = 13/141 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+ LY+++ G + ++ +++G
Sbjct: 9 RDPREVALNLLYRVEHKGAYANLAVDRELDRYEDNGSQH-----------ALVTELVNGT 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++H+D +++ L++ + + L ILR V +L+ +VP +++E V +A
Sbjct: 58 VRMRKHLDWVLNLFLSK--PIQKQNPWLREILRMSVYQLLFMDNVPEYAVVNEAVGLAGR 115
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
+N VL V R
Sbjct: 116 KLDRGLSAVVNGVLRNVIRNR 136
>gi|332363255|gb|EGJ41040.1| N utilization substance protein B [Streptococcus sanguinis SK49]
Length = 143
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G E +Y D + E+ + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG-DLVEACRFAYSYDKDEDADKVAEADIP----AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|293572652|ref|ZP_06683620.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
gi|291607238|gb|EFF36592.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E980]
Length = 452
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIT 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|149182346|ref|ZP_01860824.1| sun protein [Bacillus sp. SG-1]
gi|148849965|gb|EDL64137.1| sun protein [Bacillus sp. SG-1]
Length = 445
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S + R AA+ L ++ Y + D
Sbjct: 1 MSKGKKTVREAALDVLESVEKNQS-----------YSNLLLNHAIEKYGIKGPDTGLLTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + R+ +D ++ + +++ + +LR + ++I +P ++ E V
Sbjct: 50 LTYGTIQRRMTLDFYLAPFIN-----KKIESWVRQLLRLSLYQMIYLDKIPDRAVLFEAV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
I + IN +L + RK
Sbjct: 105 EIGKRRGHKGIASMINGILRSIQRK 129
>gi|306807668|ref|ZP_07444336.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu007]
gi|308345910|gb|EFP34761.1| putative transcription antitermination factor NusB [Mycobacterium
tuberculosis SUMu007]
Length = 232
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 9/128 (7%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
L++ ++ G S E++ + + + GV + HID
Sbjct: 3 LLFEAEVRGISAAEVVDTRAALAEAKPDIARLHP--------YTAAVARGVSEHAAHIDD 54
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
LI++ L W+ RL + +ILR V EL+ VP V++ E V +A + D P F
Sbjct: 55 LITAHL-RGWTLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGF 113
Query: 146 INAVLDKV 153
+N VL +V
Sbjct: 114 VNGVLGQV 121
>gi|296877028|ref|ZP_06901070.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis ATCC 15912]
gi|296431972|gb|EFH17777.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis ATCC 15912]
Length = 437
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR V+ L ++ G + + + + S D +
Sbjct: 1 MEVKQMNAREQIVRVLEEVFEHGAYSNIALKKTLEH-----------SQLSDKDRSFVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ +L + +L+ +P I++E V
Sbjct: 50 VVYGTVARKITLEWYLSHVIEDRTKLDPWVYY---LLMMSLYQLVYLDRIPDHAIVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L K+ R+
Sbjct: 107 RIAKSRK-EGSEKFVNAILRKLLRE 130
>gi|257882565|ref|ZP_05662218.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
gi|257818223|gb|EEV45551.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,502]
Length = 452
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 85 MLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 144
Query: 166 SAI 168
I
Sbjct: 145 DPI 147
>gi|312867896|ref|ZP_07728101.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
gi|311096651|gb|EFQ54890.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parasanguinis F0405]
Length = 437
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR V+ L ++ G + +++ + S D +
Sbjct: 1 MEVKQMNAREQIVRVLEEVFEQGAYSNIALNQALEH-----------SQLSDKDRSFVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ D L +L + +L+ +P I++E V
Sbjct: 50 VVYGTVARKITLEWYLAHVIEDRTKL---DPWLYYLLMMSLYQLVYLDRIPDHAIVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L K+ R+
Sbjct: 107 QIAKCRK-EGSEKFVNAILRKLLRE 130
>gi|322391001|ref|ZP_08064506.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
gi|321142305|gb|EFX37778.1| RNA methyltransferase Sun [Streptococcus parasanguinis ATCC 903]
Length = 437
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR V+ L ++ G + +++ + S D +
Sbjct: 1 MEIKQMNAREQIVRVLEEVFEQGAYSNIALNQALEH-----------SQLSDKDRSFVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ D L +L + +L+ +P I++E V
Sbjct: 50 VVYGTVARKITLEWYLAHVIEDRTKL---DPWLYYLLMMSLYQLVYLDRIPDHAIVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L K+ R+
Sbjct: 107 RIAKRRK-EGSEKFVNAILRKLLRE 130
>gi|220931474|ref|YP_002508382.1| NusB antitermination factor [Halothermothrix orenii H 168]
gi|259514846|sp|B8D2G0|NUSB_HALOH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219992784|gb|ACL69387.1| NusB antitermination factor [Halothermothrix orenii H 168]
Length = 134
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R+ A+Q LY +DI S I +T R ++ + Y +F
Sbjct: 1 MKITRHQERVWALQILYSLDIS--SELNIQKARKTCREFKYKKVLDKKRY------YFED 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ GV++ +Q +D +I+ W R+ I +ILR + E+ +PV V I E V
Sbjct: 53 IVEGVINSRQDLDSIINKY-AIDWDVERMACIDRNILRIALYEIE--SGLPVGVAIDEAV 109
Query: 132 CIAHDFFYGDEPKFINAVLDK 152
IA DF + PKFIN +L K
Sbjct: 110 EIAKDFGDSNSPKFINGILAK 130
>gi|294618612|ref|ZP_06698151.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
gi|291595131|gb|EFF26469.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium E1679]
Length = 445
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 21 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 77
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 78 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 137
Query: 166 SAI 168
I
Sbjct: 138 DPI 140
>gi|332357987|gb|EGJ35820.1| N utilization substance protein B [Streptococcus sanguinis SK1056]
Length = 143
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + + + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEGDLVEAC-----RFAYSYDKDEEADKAVEADIPAFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|182413526|ref|YP_001818592.1| NusB antitermination factor [Opitutus terrae PB90-1]
gi|177840740|gb|ACB74992.1| NusB antitermination factor [Opitutus terrae PB90-1]
Length = 147
Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 15 RRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R R+AA+Q L+ + + E + + + +I
Sbjct: 8 QRRDGRVAALQYLFAWSMNRPRNLAEDLRVFFENMEQPRDH-----------YAFGEELI 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
HGV++ ID I L W F R+ I +ILR + E++ +P V I+E + +
Sbjct: 57 HGVIEHSDDIDARI-KGLAHNWEFDRIAKIDLTILRLAIFEILHRKDIPPVVSINEAIDL 115
Query: 134 AHDFFYGDEPKFINAVLDKV 153
+ F D +FIN +LD++
Sbjct: 116 SKQFSNADAKRFINGILDRL 135
>gi|229019401|ref|ZP_04176224.1| N utilization substance protein B [Bacillus cereus AH1273]
gi|229025645|ref|ZP_04182051.1| N utilization substance protein B [Bacillus cereus AH1272]
gi|229098654|ref|ZP_04229594.1| N utilization substance protein B [Bacillus cereus Rock3-29]
gi|229104810|ref|ZP_04235471.1| N utilization substance protein B [Bacillus cereus Rock3-28]
gi|229117679|ref|ZP_04247049.1| N utilization substance protein B [Bacillus cereus Rock1-3]
gi|228665771|gb|EEL21243.1| N utilization substance protein B [Bacillus cereus Rock1-3]
gi|228678683|gb|EEL32899.1| N utilization substance protein B [Bacillus cereus Rock3-28]
gi|228684733|gb|EEL38671.1| N utilization substance protein B [Bacillus cereus Rock3-29]
gi|228735643|gb|EEL86232.1| N utilization substance protein B [Bacillus cereus AH1272]
gi|228741871|gb|EEL92048.1| N utilization substance protein B [Bacillus cereus AH1273]
Length = 120
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 18/132 (13%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVIIHGVMDRKQ 81
+QALYQ+DI G + ++ VE+ + E+ ++ G +D K+
Sbjct: 1 MQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESLVVGFVDNKE 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
ID I L + W R+ ++ SILR V E+ +P V I+E + IA F +
Sbjct: 46 EIDAAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINEAIEIAKTFGDEE 104
Query: 142 EPKFINAVLDKV 153
+FIN VL +
Sbjct: 105 SRRFINGVLSNI 116
>gi|207092122|ref|ZP_03239909.1| transcription antitermination protein NusB [Helicobacter pylori
HPKX_438_AG0C1]
gi|317011858|gb|ADU82466.1| transcription antitermination protein NusB [Helicobacter pylori
Lithuania75]
Length = 138
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++R ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +SRK
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSRKL 132
>gi|313680543|ref|YP_004058282.1| nusb antitermination factor [Oceanithermus profundus DSM 14977]
gi|313153258|gb|ADR37109.1| NusB antitermination factor [Oceanithermus profundus DSM 14977]
Length = 142
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A + L++ E + R ++ G
Sbjct: 2 RRRARELAFKVLFEHLQGDVPLEEAWRH-----------ALEGEELDEEGRAFARRLVEG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ I + E W F ++ ++LR E++ P +I V IA
Sbjct: 51 FAR-RAAEVDRILAETVEGWDFGQMSKTDLAVLRLATYEMLYED-TPFAPLIEVAVKIAG 108
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D KF+N VL ++ R+ +
Sbjct: 109 KYGGEDSGKFVNGVLARLKRRIDAGE 134
>gi|311894797|dbj|BAJ27205.1| hypothetical protein KSE_13770 [Kitasatospora setae KM-6054]
Length = 477
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 14/173 (8%)
Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
M+ K HRR AR+ A +AL +D I+
Sbjct: 1 MSTPAGAKRAPRPHRRPKKDPARIVAFRALRAVDERDAYANLILPSLLREA--------E 52
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D +++G + + D +I++C+ +D + +L G +L+
Sbjct: 53 RKGMERRDAALATELVYGTLRGQGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLG 110
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+P +S V +A KF+NAVL K+S ++ V+ +
Sbjct: 111 TR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRKISAQDLAGWVAQVAPPYE 162
>gi|210134202|ref|YP_002300641.1| transcription antitermination protein NusB [Helicobacter pylori
P12]
gi|238055353|sp|B6JPA0|NUSB_HELP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|210132170|gb|ACJ07161.1| N utilization substance protein B [Helicobacter pylori P12]
Length = 138
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++R ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|148993974|ref|ZP_01823344.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP9-BS68]
gi|168488122|ref|ZP_02712321.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP195]
gi|225858284|ref|YP_002739794.1| transcription antitermination protein NusB [Streptococcus
pneumoniae 70585]
gi|254772657|sp|C1C5G8|NUSB_STRP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|147927563|gb|EDK78590.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP9-BS68]
gi|183573223|gb|EDT93751.1| transcription antitermination factor NusB [Streptococcus pneumoniae
SP195]
gi|225721195|gb|ACO17049.1| transcription antitermination factor NusB [Streptococcus pneumoniae
70585]
gi|301793671|emb|CBW36056.1| N utilization substance protein B homolog (NusB protein)
[Streptococcus pneumoniae INV104]
gi|332075276|gb|EGI85746.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA17570]
Length = 140
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTNVETACRFAYTH---------DREDTDVQLPAFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|291558612|emb|CBL37412.1| transcription antitermination factor NusB [butyrate-producing
bacterium SSC/2]
Length = 137
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 10/146 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + L+ ++ E + + +
Sbjct: 2 KRSEVREHIFRILFCVEFCEK---------EEFEDQVELYFHGHENINEKTQKEITEKTE 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+++ ID I S T W+ RL SILR E++ VP +V I+E V +A
Sbjct: 53 NLIEHLDEIDEQI-SAHTNAWNLERLGKAELSILRLATYEILLDEQVPRKVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
+ FIN VL K+ + + +
Sbjct: 112 KKYCNEKAAPFINGVLSKIGQDMDEE 137
>gi|154497982|ref|ZP_02036360.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
29799]
gi|150272972|gb|EDN00129.1| hypothetical protein BACCAP_01962 [Bacteroides capillosus ATCC
29799]
Length = 447
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ AL + G + + E+ D + GV+
Sbjct: 8 ARETALLALSACERQGAWSD-----------GFLKKTLREAGLDSRDAALATRLCFGVLQ 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D I T + ++++ + + LR GV ++ +P ++E V +
Sbjct: 57 NRLLLDFYIGKFSTTRP--EKMEIKVRNALRLGVYQMAFMTKIPHNAAVNESVELTKKHC 114
Query: 139 -YGDEPKFINAVLDKVSRKEE 158
+N VL VSR +
Sbjct: 115 KNPRAAGMVNGVLRNVSRNID 135
>gi|125717317|ref|YP_001034450.1| transcription antitermination protein NusB [Streptococcus sanguinis
SK36]
gi|125497234|gb|ABN43900.1| Nitrogen utilization substance protein B, putative [Streptococcus
sanguinis SK36]
Length = 148
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + + + ++
Sbjct: 12 ESRRGLRQRAFQALMSLEYEGDLVEAC-----RFAYSYDKDEGADKAAEADIPAFLLNLV 66
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 67 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 125
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 126 SKQFSDEKSSKFINGILSQFI 146
>gi|86605784|ref|YP_474547.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
gi|86554326|gb|ABC99284.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-3-3Ab]
Length = 448
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ AL +I+ ++ + S + D +++G+
Sbjct: 2 NARQLALLALQKIERHNAYADVVLEHLLAH-----------SRLIPADCHLVSELVYGIT 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R++ +D LI + + + L IL G +L +P I V +A
Sbjct: 51 RRRRTLDALID--CFARRPAHQQPLDLRLILYLGFYQLAFLDHIPPRAAIHTSVELARQV 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
G +N +L R+
Sbjct: 109 GLGSLTGVVNGILRAYQRQ 127
>gi|319956407|ref|YP_004167670.1| nusb antitermination factor [Nitratifractor salsuginis DSM 16511]
gi|319418811|gb|ADV45921.1| NusB antitermination factor [Nitratifractor salsuginis DSM 16511]
Length = 143
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 13/152 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V LY D+ + E+ + E+ +
Sbjct: 1 MATRHQARRAVVGLLYAYDLGNDGIEKFSE-----------EILESDKIRNKQREFSMRL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G ++ ID I L E W +S++ + +ILR G E++ +II+E V
Sbjct: 50 FKGTIENLDKIDEEIQKHL-ESWDYSKIGKVEKAILRLGAYEILI-EGTDRPIIINEAVE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+A + P+FIN VLD V + +
Sbjct: 108 LAKELADEKSPQFINGVLDAVGKPVAKPEAAS 139
>gi|294811534|ref|ZP_06770177.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
27064]
gi|326440079|ref|ZP_08214813.1| RNA-binding Sun protein [Streptomyces clavuligerus ATCC 27064]
gi|294324133|gb|EFG05776.1| Putative RNA-binding Sun protein [Streptomyces clavuligerus ATCC
27064]
Length = 481
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 26/181 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIA-----------RLAAVQALYQIDIIGCSTTEIISEYETYRF 49
M Q + + R A R+ A +AL +D ++
Sbjct: 1 MNDQ-----ARPAGPRRAAKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR--- 52
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + + D +++G + + D +I++C+ +D + +L
Sbjct: 53 ----KAREKGDFDARDAALATELVYGTLRLQGTYDAVIAACVDR--PLREVDPPVLDVLS 106
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
G +L+ +P +S V +A KF+NAVL +++R + V+
Sbjct: 107 LGAHQLLGTR-IPSHAAVSATVELARVVLGDGRAKFVNAVLRRIARDDLDTWVERVAPPY 165
Query: 170 Q 170
+
Sbjct: 166 E 166
>gi|319939671|ref|ZP_08014030.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
anginosus 1_2_62CV]
gi|319811260|gb|EFW07566.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
anginosus 1_2_62CV]
Length = 437
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A+ A+++ Y A + +E D
Sbjct: 1 MVNKIKTARQTAL-AVFEAVFSEG----------AYSNIALNQTLLEVPLSSADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++G + RK ++ +S + + D L +L + ++ +P +++E V
Sbjct: 50 IVYGTVARKITLEWYLSHVIENRDKL---DSWLYILLLMSLYQIQYLDKIPAHAVVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
+A KF+NAVL ++ R
Sbjct: 107 ELAKARK-KGSEKFVNAVLRRLLRD 130
>gi|282866194|ref|ZP_06275241.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
gi|282558978|gb|EFB64533.1| Fmu (Sun) domain protein [Streptomyces sp. ACTE]
Length = 477
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 12/156 (7%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M Q ++ K R + R A +AL +D ++ + +
Sbjct: 1 MNDQQRRRPAKQHRRPEKDPVRFLAFEALRAVDERDAYANLVLPPLL-------KKARAK 53
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D +++G + R+ D ++++C+ +D + ++ GV +L+
Sbjct: 54 GDFDGRDAALATELVYGTLRRQGTYDAIVAACVDR--PLREVDPPVLDVIEMGVHQLLGT 111
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+P +S V +A KF+NAVL KVS
Sbjct: 112 R-IPTHAAVSASVELARVVLGEGRAKFVNAVLRKVS 146
>gi|269797978|ref|YP_003311878.1| NusB antitermination factor [Veillonella parvula DSM 2008]
gi|269094607|gb|ACZ24598.1| NusB antitermination factor [Veillonella parvula DSM 2008]
Length = 134
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + + D + +++ +D +
Sbjct: 1 MVTKRNRREARQYAFQMLYANEF--------------HTDQNDVQFPEGNIHKAMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIIS 128
II GV+ + ID + + + LD + SILR V E+ + + I+
Sbjct: 47 NSIIEGVLSNAEAIDATLQPFCKSR-KVANLDKVDRSILRIAVWEMNNKVEPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A +F K INA+LD ++ +
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSK 134
>gi|294623688|ref|ZP_06702521.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
gi|291596903|gb|EFF28121.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecium U0317]
Length = 445
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 21 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 77
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+L V +L VP I++E V IA KF+N VL R+ G
Sbjct: 78 MLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQGAPDLQGIA 137
Query: 166 SAI 168
I
Sbjct: 138 DPI 140
>gi|332364657|gb|EGJ42426.1| N utilization substance protein B [Streptococcus sanguinis SK1059]
Length = 143
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + + + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEGDLVEAC-----RFSYSYDKDEEADKAAEADIPAFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|309389162|gb|ADO77042.1| NusB antitermination factor [Halanaerobium praevalens DSM 2228]
Length = 133
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R+ A+Q LY +DI + + E L DL + I+
Sbjct: 5 SRHKQRIWALQILYGLDIRKKLA-------LEHSKKSYENFMAEKGVLSEDL-YVAEILE 56
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G++ + +D I W R+ I +ILR E+ +P +V I+E V IA
Sbjct: 57 GIILELELLDAQIDQY-AINWDIERMPAIDRNILRIAAYEIQH--DIPAKVAINEAVKIA 113
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ P FIN +L K +
Sbjct: 114 KKYADDSSPSFINGILSKFA 133
>gi|327469227|gb|EGF14699.1| N utilization substance protein B [Streptococcus sanguinis SK330]
gi|332363805|gb|EGJ41584.1| N utilization substance protein B [Streptococcus sanguinis SK355]
Length = 143
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + Y + D E D + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG---DLVEACRFAYSYDKDEEADKAAEADIP--AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|309799755|ref|ZP_07693969.1| transcription antitermination factor NusB [Streptococcus infantis
SK1302]
gi|308116621|gb|EFO54083.1| transcription antitermination factor NusB [Streptococcus infantis
SK1302]
Length = 140
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEY-GSDLETACRFAYTH---------DREDTDVQLPNFLVELV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W+ +RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAKKDDLDKQITQHLKTGWTINRLTLVEKNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A F +FIN +L + +E+
Sbjct: 116 AKSFSDQKSARFINGLLSQFVTEED 140
>gi|205373322|ref|ZP_03226126.1| sun protein [Bacillus coahuilensis m4-4]
Length = 267
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 16/137 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA++ L Q++ Y + D+ + +G + R
Sbjct: 6 REAALEVLEQVEKNQS-----------YSNLLLNHTIEKYEIKGPDVGLLTELTYGSIQR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + +++ + +L + +++ VP I E V IA +
Sbjct: 55 KMTLDYYLKPFIR-----KKVENWVRLLLHLSLYQMLYLDRVPERAAIHEAVEIAKKRGH 109
Query: 140 GDEPKFINAVLDKVSRK 156
+N +L + R+
Sbjct: 110 KGIAGLVNGILRSIQRE 126
>gi|256028476|ref|ZP_05442310.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
gi|289766397|ref|ZP_06525775.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
gi|289717952|gb|EFD81964.1| transcription antitermination protein NusB [Fusobacterium sp. D11]
Length = 157
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 76/158 (48%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ +++ K +AR + ++ ++ G S+ E+ ++ Y + + +
Sbjct: 1 MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDFNIY---LQNDEEFINA 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ + I+G+++ +I +I T+ W++ R+ +I S+L G E + +
Sbjct: 58 LSEKQLEFIKNSINGIVENYDNIKDIIKKN-TQNWTYERIGVIERSLLIVGTYEFLI-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E V +A ++ +FIN +L + + +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANIEKAKN 153
>gi|222054190|ref|YP_002536552.1| sun protein [Geobacter sp. FRC-32]
gi|221563479|gb|ACM19451.1| sun protein [Geobacter sp. FRC-32]
Length = 448
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ S+ R AA + L +ID +I + D
Sbjct: 1 MSSSNPRS----AAFEILLRIDKERSYADILIDRELS-----------AGALQGPDRGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ R+ +D +I ++ RL+ + +LR G+ ++ VPV ++E
Sbjct: 46 TELVYGVLRRQATLDHIIRRFSSQ--RLERLERSVLLLLRIGLYQMFYLDRVPVSAAVNE 103
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A FINAVL R+ +
Sbjct: 104 TVKLAKVLV-PRASGFINAVLRNADRERD 131
>gi|317484770|ref|ZP_07943669.1| transcription antitermination factor NusB [Bilophila wadsworthia
3_1_6]
gi|316923977|gb|EFV45164.1| transcription antitermination factor NusB [Bilophila wadsworthia
3_1_6]
Length = 146
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 26 ALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVY-LHVDLEWFRVIIHGVMDRKQHI 83
LY + + ++ + + D ++D + + ++ GV +++
Sbjct: 1 MLYSLQFSPSTTLGDVRTAFLEMPDPTDADMDENAETREEKLYGFAWELVEGVWSNVKNL 60
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D +I ++ W RL I ++LR V E++ VP +V I+E + ++ F
Sbjct: 61 DSVI-ERFSQNWRVDRLGKIELTLLRLAVFEMLYRADVPPKVAINEALELSTRFGDAKAK 119
Query: 144 KFINAVLDKVSRKEEI 159
FIN +LD + +E
Sbjct: 120 SFINGILDAAIKAQEA 135
>gi|168186789|ref|ZP_02621424.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
gi|169295225|gb|EDS77358.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum C str. Eklund]
Length = 443
Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V L E++ + Y + ++ D I++G +
Sbjct: 3 KARKICVDVL-----------EMVFKKNAYSNIVLRQTLNKNKIDDKDKGLITEIVYGTI 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ID ++++ L + LD + +ILR V ++ +P ++E V IA
Sbjct: 52 KYKYTIDTILNNYLKKG--IKSLDSYVLNILRITVYQIKFLDKIPNFAAVNEAVEIAKKQ 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
K +N VL R + K
Sbjct: 110 RSVGASKLVNGVLRNYLRNLDKK 132
>gi|229918581|ref|YP_002887227.1| sun protein [Exiguobacterium sp. AT1b]
gi|229470010|gb|ACQ71782.1| sun protein [Exiguobacterium sp. AT1b]
Length = 443
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA+ L +I+ G Y A + + D+ + +++G + R
Sbjct: 4 REAALDTLMKIEQGG-----------AYSTIAVNDTLKQKKVAPKDVGLYTELVYGTLSR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D ++ + + + +LR V +L VP ++ E V IA +
Sbjct: 53 KGTLDYILKDRIRSPKKLDKFVLP---LLRMSVYQLFYLDKVPDRAVLHEAVEIAKKRGH 109
Query: 140 G-DEPKFINAVLDKVSRK 156
KF+N VL V R+
Sbjct: 110 HLGTSKFVNGVLRNVLRE 127
>gi|237743358|ref|ZP_04573839.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
gi|229433137|gb|EEO43349.1| transcription antitermination protein NusB [Fusobacterium sp. 7_1]
Length = 157
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ +++ K +AR + ++ ++ G S+ E+ ++ + + +
Sbjct: 1 MSKNFEEQEKKAKGGIRLAREEVFKLVFGAELTGSSSDELKQDF---SIYLQNDEEFINA 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ + I+G+++ +I +I T+ W++ R+ +I S+L G E + +
Sbjct: 58 LSEKQLEFIKNSINGIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFLI-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E V +A ++ +FIN +L + + +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANIEKAKN 153
>gi|308272081|emb|CBX28689.1| hypothetical protein N47_G40130 [uncultured Desulfobacterium sp.]
Length = 450
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+Q L +D + ++ E++ + F +++GV
Sbjct: 2 HDTRSLAIQFLNSLDKKKHTLDSLLEEFQNKYI-----------LPKREKALFNALVYGV 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + +D +I + + + + +ILR G+ ++I + +PV ++ V IA
Sbjct: 51 LRWRSRLDWIIRQFSKQ--PPEKTNTEILNILRIGLFQIIHLNRIPVSAAVNTSVEIAKH 108
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
++NAVL + R+ +
Sbjct: 109 TVGTKCSGYVNAVLRRTVREYK 130
>gi|315604170|ref|ZP_07879236.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313876|gb|EFU61927.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 208
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 9/145 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGC-STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A +Y+ D G S + + + R V + E+ II
Sbjct: 9 SRTKARKRAADVVYEADQRGMGSNPDALRDLLRER-------RVITAAQTPLPEFSLRII 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV D + ID LI S R+ + +++R V E++E V ++I E V I
Sbjct: 62 GGVADNLRRIDSLI-SAHARVPGLDRIAAVDLAVMRVAVWEMLENDEVSPIIVIDEAVSI 120
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
P F+NAVLD + + E
Sbjct: 121 VRSISTDTSPAFVNAVLDAIRKDLE 145
>gi|261419371|ref|YP_003253053.1| sun protein [Geobacillus sp. Y412MC61]
gi|319766186|ref|YP_004131687.1| sun protein [Geobacillus sp. Y412MC52]
gi|261375828|gb|ACX78571.1| sun protein [Geobacillus sp. Y412MC61]
gi|317111052|gb|ADU93544.1| sun protein [Geobacillus sp. Y412MC52]
Length = 444
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L I+ G Y E + D I++G + R
Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + + +LR + +++ VP + E V IA +
Sbjct: 53 RDTLDYYLAPFLRKARRLEPW---VRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126
>gi|323353378|ref|ZP_08087911.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
gi|322121324|gb|EFX93087.1| N utilization substance protein B [Streptococcus sanguinis VMC66]
gi|327472778|gb|EGF18205.1| N utilization substance protein B [Streptococcus sanguinis SK408]
Length = 143
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + + D + + + + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEGELVEAC-----RFAYSYDKDEEADKAAEADIPAFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|108562426|ref|YP_626742.1| transcription antitermination protein NusB [Helicobacter pylori
HPAG1]
gi|208433977|ref|YP_002265643.1| N utilization substance protein B [Helicobacter pylori G27]
gi|217031745|ref|ZP_03437249.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
gi|298737115|ref|YP_003729645.1| N utilization substance protein B [Helicobacter pylori B8]
gi|308182189|ref|YP_003926316.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan4]
gi|119390776|sp|Q1CVF4|NUSB_HELPH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238055475|sp|B5Z6D7|NUSB_HELPG RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|107836199|gb|ABF84068.1| N utilization substance protein B [Helicobacter pylori HPAG1]
gi|208431906|gb|ACI26777.1| N utilization substance protein B [Helicobacter pylori G27]
gi|216946592|gb|EEC25192.1| hypothetical protein HPB128_155g58 [Helicobacter pylori B128]
gi|298356309|emb|CBI67181.1| N utilization substance protein B [Helicobacter pylori B8]
gi|308064374|gb|ADO06266.1| transcription antitermination protein NusB [Helicobacter pylori
PeCan4]
gi|317179797|dbj|BAJ57583.1| transcription antitermination protein NusB [Helicobacter pylori
F32]
Length = 138
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++R ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|328945778|gb|EGG39929.1| N utilization substance protein B [Streptococcus sanguinis SK1087]
Length = 143
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G E +Y + + E+ + ++
Sbjct: 7 ESRRGLRQRAFQALMSLEYEG-DLVEACRFAYSYDKDEEADKVAEADIP----AFLLNLV 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ K +D I+ L + W+ RL ++ +ILR G+ E+ E P V ++E + +
Sbjct: 62 SGVVQSKDDLDKKIAQHLKKGWTVDRLTLVEKNILRLGIFEITEFD-TPQLVAVNEAIEL 120
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
+ F KFIN +L +
Sbjct: 121 SKQFSDEKSSKFINGILSQFI 141
>gi|172057934|ref|YP_001814394.1| sun protein [Exiguobacterium sibiricum 255-15]
gi|171990455|gb|ACB61377.1| sun protein [Exiguobacterium sibiricum 255-15]
Length = 446
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+ + ++ + D+ + +++G + R+ +D ++ LT++
Sbjct: 19 AFSTISVHQMLEKRAISKADVGLYTELVYGTLSRELTLDYILEPFLTKQKKLDPFMRP-- 76
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+LR V +L +P +I+E V IA K +N VL V R + S
Sbjct: 77 -LLRMSVYQLFYLDRIPDHAVINEAVEIAKTRGKPHIAKVVNGVLRNVLRTGKPDFSAIP 135
Query: 166 SAI 168
S +
Sbjct: 136 STV 138
>gi|157163972|ref|YP_001466235.1| transcription antitermination protein NusB [Campylobacter concisus
13826]
gi|166215673|sp|A7ZBS7|NUSB_CAMC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|112801548|gb|EAT98892.1| transcription antitermination factor NusB [Campylobacter concisus
13826]
Length = 131
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY +I + + E E + +
Sbjct: 1 MATRHQVRQAIVSLLYSNEINPVTAE------------FEDEFLEEKKIRNERKNEAQQT 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
V+ K+ +D ++ L + FS++ +ILR G+ E+ VII+E +
Sbjct: 49 FKEVLANKEKLDEILKPHLKDG-DFSKVGATELAILRLGLYEMKFS-QTDKAVIINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + PKFIN VLDK+
Sbjct: 107 LAKELGSDQAPKFINGVLDKI 127
>gi|297530652|ref|YP_003671927.1| sun protein [Geobacillus sp. C56-T3]
gi|297253904|gb|ADI27350.1| sun protein [Geobacillus sp. C56-T3]
Length = 444
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L I+ G Y E + D I++G + R
Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + + +LR + +++ VP + E V IA +
Sbjct: 53 RDTLDYYLAPFLRKARRLEPW---VRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126
>gi|293392569|ref|ZP_06636889.1| transcription termination/antitermination factor NusB [Serratia
odorifera DSM 4582]
gi|291424971|gb|EFE98180.1| transcription termination/antitermination factor NusB [Serratia
odorifera DSM 4582]
Length = 117
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ ++ ++ T E VD+ +FR ++ GV +D L++ L
Sbjct: 1 MSKNDIADVELQFLT-----------EQDVKDVDIAYFRELLSGVAVNAGTLDALMAPYL 49
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + L + ++LR + EL VP +V I+E + +A F D KF+N VLD
Sbjct: 50 SRQ--LEELGQVEKAVLRIALFELKMREDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107
Query: 152 KVSRKEEIKR 161
K + K+
Sbjct: 108 KAAPSIRKKK 117
>gi|126656069|ref|ZP_01727453.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
gi|126622349|gb|EAZ93055.1| Fmu, rRNA SAM-dependent methyltransferase [Cyanothece sp. CCY0110]
Length = 452
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ L+ + AR + L ID T + T ++ D
Sbjct: 1 MSLTKKNTNARQLTLDILRHIDRQHTYTDIALDRSLT-----------QNNLNPSDRSLC 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++G++ ++ +D LI + + L IL G+ +L + +P ++
Sbjct: 50 TQLVYGIVRHQRTLDTLIDQLGKK--KAQQQPPDLRRILHIGLYQLRYLNHIPPSAAVNT 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V +A D+ +N +L + RK +
Sbjct: 108 SVNLAKDYQLNRLSGVVNGILRQYIRKSKE 137
>gi|319939911|ref|ZP_08014266.1| transcription antitermination protein NusB [Streptococcus anginosus
1_2_62CV]
gi|319810922|gb|EFW07241.1| transcription antitermination protein NusB [Streptococcus anginosus
1_2_62CV]
Length = 141
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 8/139 (5%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A QAL ++ + + Y + D D + + ++ G
Sbjct: 9 RRELRERAFQALMSLEYEK---DIVEACRFAYLYDKDMTNDSDVELP----AFLLNLVMG 61
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V K +D +S L E W+ RL +I +ILR G+ E+ E P V I+E + ++
Sbjct: 62 VEQSKNELDDKLSQYLKEGWTLERLTLIEKNILRLGLFEMTEFD-TPQLVAINEAIELSK 120
Query: 136 DFFYGDEPKFINAVLDKVS 154
F KFIN +L K
Sbjct: 121 KFSDEKSSKFINGILSKFV 139
>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
Length = 429
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R V+ L ++D Y E S + D ++ + +GV++R
Sbjct: 5 RRFTVKLLTRLDENSS-----------YSNILLDEALARSDFDKRDKKFISALFYGVLER 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I+ ++L+ L +ILR+G+ +L SVP + E V +A
Sbjct: 54 RLTLDAMIAELSKN--PKNKLNNTLRNILRSGLYQLKYMDSVPDNAAVDESVEMAKKLRN 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
F+N +L + R+++
Sbjct: 112 PASAGFVNGLLREFIRRDKA 131
>gi|261838874|gb|ACX98639.1| transcription antitermination protein NusB [Helicobacter pylori 52]
Length = 138
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSILE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB [Helicobacter pylori
26695]
gi|7387970|sp|O24853|NUSB_HELPY RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|2313078|gb|AAD07074.1| predicted coding region HP0001 [Helicobacter pylori 26695]
Length = 138
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|158522242|ref|YP_001530112.1| sun protein [Desulfococcus oleovorans Hxd3]
gi|158511068|gb|ABW68035.1| sun protein [Desulfococcus oleovorans Hxd3]
Length = 468
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 14/151 (9%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
DN++ + R+ R A++ L ++ + ++ AD L S
Sbjct: 9 DNRRPT--AARKSDPRAVALRILTALEKGHRTLDQV----------ADEALARVSFPEKR 56
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D +++GV+ + +D I + R+D + +ILR G+ +L +P
Sbjct: 57 DRALVTTLVYGVLRWRNTLDYTIVHF--SRTPLQRMDPAVLNILRLGLFQLRFLDRIPDF 114
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+ V ++ G F+N +L +R
Sbjct: 115 AAINSSVDLSKQAGLGRLSGFVNGLLRSSTR 145
>gi|304437063|ref|ZP_07397026.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304370014|gb|EFM23676.1| ribosomal RNA small subunit methyltransferase B [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 449
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 16/150 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A+Q L ++ G Y A + + D + +++G +
Sbjct: 12 RIRERAMQVLLRVHSEG-----------AYANVALVDALRGAAMAERDRRFLTELVYGTV 60
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D++I + + + +LR G ++ +P + V +A
Sbjct: 61 KAGETLDVMIRRYVA---DLKKAQPPIRELLRLGFYQIFFMDKIPSSAVCHTAVELAKKH 117
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+N VL R+ + R+
Sbjct: 118 GGKGAASFVNGVLRTALREPQ--RAALPKG 145
>gi|229828872|ref|ZP_04454941.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
14600]
gi|229792035|gb|EEP28149.1| hypothetical protein GCWU000342_00957 [Shuttleworthia satelles DSM
14600]
Length = 152
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 56/152 (36%), Gaps = 10/152 (6%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCST--TEIISEYETYRFCADTELDVESV------YL 62
K + R R A + L+ ++ ++ + + +L E
Sbjct: 3 KKTMIRRQIRETAFRILFVLNFCPADQMQDQLNLYFTDHTELEIDDLTEEEDQKAVIRLD 62
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
G ID +I +E W SRL + ++LR V E+ ++P
Sbjct: 63 QASWPEITAKCLGAAGHLPEIDRIIEES-SEGWKLSRLTKVDLTLLRLAVYEMKF-ENLP 120
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ I+E V +A + P F+N VL K+S
Sbjct: 121 SGIAINEAVELAKRYGTDKSPAFVNGVLAKIS 152
>gi|124514784|gb|EAY56296.1| transcription antitermination factor (NusB) [Leptospirillum
rubarum]
Length = 168
Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 59/159 (37%), Gaps = 22/159 (13%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR+ +Q+L+ + + L FR + G
Sbjct: 22 HKARIEVLQSLFAGE----------------YLPGGPPPFTLTSTLPSQARLFRDRLGGA 65
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + + S + W+ R+ + +ILR G+ E++ VP V + E + +AH
Sbjct: 66 IREHREEIDTVISRFSVDWTLDRMSRVDRNILRMGICEILFEPEVPFRVTVDESLELAHQ 125
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRS------GCVSAIT 169
F + +FIN +L +V + +++ G +
Sbjct: 126 FSEPEAVRFINGILHRVGTELNPEKALGSLEDGRPQPES 164
>gi|160880647|ref|YP_001559615.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
gi|189035885|sp|A9KMC2|NUSB_CLOPH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|160429313|gb|ABX42876.1| NusB antitermination factor [Clostridium phytofermentans ISDg]
Length = 132
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ + TE+ + Y + E+ V
Sbjct: 3 RREIREHLFRMLFRKEFH--EPTELEEQVLFYFDSLE-------SITPEQQEYLNVRFDK 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ++ I I + + W +R+ + +I+R E+ VPV+V I+E + +A
Sbjct: 54 INEKLGEI-DTILANASSGWKLNRMGKVDLNIMRLATFEIRFDDEVPVKVAINEAIELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ F+N +L KV
Sbjct: 113 KYGGDSSASFVNGILAKVI 131
>gi|259503543|ref|ZP_05746445.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
gi|259168621|gb|EEW53116.1| RNA methyltransferase Sun [Lactobacillus antri DSM 16041]
Length = 448
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+++++ AR A+ AL + + Y +L + D
Sbjct: 1 MTNKKMTAREVALTAL-----------DRVRRRGAYSNLQLNQLLSKHQLNDNDRRLATR 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++G + R+ ++ + + +LD + ++L + + VP + E +
Sbjct: 50 IVYGTLQRQLTLEYWLQPFVKG----KKLDSWVETLLLTALYQYQYLERVPDWAVTDETI 105
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+ VL V R+
Sbjct: 106 EIAKQWGNPGIRKFVTGVLHAVLRQ 130
>gi|109946871|ref|YP_664099.1| transcription antitermination protein NusB [Helicobacter
acinonychis str. Sheeba]
gi|122973428|sp|Q17Z26|NUSB_HELAH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|109714092|emb|CAJ99100.1| transcription termination protein [Helicobacter acinonychis str.
Sheeba]
Length = 138
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A ++ LY + +I E + L + +
Sbjct: 1 MATRTQARGAVIELLYAFESGNEEIKKIAPSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|308183797|ref|YP_003927930.1| transcription antitermination protein NusB [Helicobacter pylori
SJM180]
gi|308059717|gb|ADO01613.1| transcription antitermination protein NusB [Helicobacter pylori
SJM180]
Length = 138
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEGIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|291276400|ref|YP_003516172.1| transcription termination protein [Helicobacter mustelae 12198]
gi|290963594|emb|CBG39426.1| transcription termination protein [Helicobacter mustelae 12198]
Length = 130
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A + LY DI ++ ++ E + + +
Sbjct: 1 MATRSQAREAVIGFLYAYDIGNLEIRKMA-----------VDILEEKKIRNKQQSFALDL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G++ +D I+ L + W F +L + +ILR G E++ C V I+E +
Sbjct: 50 FDGILKNLDLLDEQITRHLKD-WEFKKLGGMERAILRLGAYEILCCQIDKPIV-INEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + PK IN VLD + +
Sbjct: 108 LAKSYGEEMAPKLINGVLDSLKK 130
>gi|56419708|ref|YP_147026.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
gi|56379550|dbj|BAD75458.1| RNA-binding Sun protein [Geobacillus kaustophilus HTA426]
Length = 444
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L I+ G Y E + D I++G + R
Sbjct: 4 RELALDTLLAIEQKG-----------AYSHLQLNEAIQKGRLDGRDAALLTEIVYGTVQR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + + +LR + +++ VP + E V IA +
Sbjct: 53 RDTLDYYLAPFLRKARRLEPW---VRVLLRLTLYQMVYLDRVPDRAAVFEAVEIAKRRGH 109
Query: 140 GDEPKFINAVLDKVSRK 156
+N VL + R+
Sbjct: 110 RGIASLVNGVLRAIGRE 126
>gi|304404144|ref|ZP_07385806.1| sun protein [Paenibacillus curdlanolyticus YK9]
gi|304347122|gb|EFM12954.1| sun protein [Paenibacillus curdlanolyticus YK9]
Length = 521
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++AL I E + + D +++G +
Sbjct: 67 AREVALEAL-----------VKIEREEAFSNLVLNSALQHAELSRADAGLATELVYGTLQ 115
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D +S+ + +L+ + +LR +L+ +P ++E V IA
Sbjct: 116 RRLSLDHALSALAAKG--LGKLEPWVLQLLRLSAYQLLFLDRIPAHAAVNEAVAIAKRRG 173
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ +N +L + R+ +
Sbjct: 174 HSGISGMVNGMLRNLLRRRDE 194
>gi|293192811|ref|ZP_06609706.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
odontolyticus F0309]
gi|292820058|gb|EFF79056.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
odontolyticus F0309]
Length = 490
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 21/169 (12%)
Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
+S RR A R A L++++ G I+ + A + +
Sbjct: 1 MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFANIILPK-------ALRQARRDGH 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + ++HG + +D +IS + + LD +LR G +L++
Sbjct: 54 FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGTHQLLDMR- 110
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
VP +S V +A + +F+NAVL ++R++ +R + AI
Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159
>gi|269218512|ref|ZP_06162366.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269211623|gb|EEZ77963.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 534
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
ARL A + L +D ++ +D + + +G +
Sbjct: 68 AARLVAFEVLRAVDEDDAYANLVLPVEIARA-----------GLNKLDAAYATNLCYGTL 116
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ D +IS C + +D + +LR G +L+ P I E V IA +F
Sbjct: 117 RMRGRWDAIISRC-AKGRRIYDIDPPVLDLLRMGCEQLLAME-TPPHAAIHETVVIARNF 174
Query: 138 FYGDEPKFINAVLDKVSRKE----EIKRSGCVSAI 168
F F+NAVL ++S K EI RS S
Sbjct: 175 FGQGTGGFVNAVLRRISEKAGQWPEIVRSSTASRT 209
>gi|29833420|ref|NP_828054.1| RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
gi|29610543|dbj|BAC74589.1| putative RNA-binding Sun protein [Streptomyces avermitilis MA-4680]
Length = 476
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 14/172 (8%)
Query: 1 MTIQDN--KKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q +K K R + R A +AL +D ++ +
Sbjct: 1 MSEQSRQPRKPGKPHRRPQKDPVRFLAFEALRAVDERDAYANLVLPPLLR-------KAR 53
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + D +++G + R+ D +I++C+ +D + +L GV +L+
Sbjct: 54 QKGDFDGRDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLSLGVHQLL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV++ + ++
Sbjct: 112 GTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAQHDLDGWLEQIAPP 162
>gi|15611072|ref|NP_222723.1| transcription antitermination protein NusB [Helicobacter pylori
J99]
gi|7387981|sp|Q9ZN57|NUSB_HELPJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|4154504|gb|AAD05585.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|84619221|emb|CAJ42345.1| hypothetical Sun-family protein [Streptomyces steffisburgensis]
Length = 475
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 11/172 (6%)
Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ Q + R R+ A +AL +D ++ +
Sbjct: 1 MSDQPRRPRSSGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLRKAREKEGP-- 58
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ D +++G + + D +++SC+ +D + +L G +L+
Sbjct: 59 --EKFDARDAALATELVYGTLRWQGTYDAVLASCVDR--PLGDVDPPVLDVLSLGAHQLL 114
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P +S V +A KF+NAVL KV++ + V+
Sbjct: 115 GTR-IPTHAAVSATVELARVVLGDGRAKFVNAVLRKVAQHDLDGWLERVAPP 165
>gi|332294978|ref|YP_004436901.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
gi|332178081|gb|AEE13770.1| NusB antitermination factor [Thermodesulfobium narugense DSM 14796]
Length = 134
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R ++ LY+++I ST ++ + D E+ RV
Sbjct: 1 MKKSLRYLREMVLKILYELEINSQSTINVLMQRYAEHI------------QPEDFEFIRV 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
G+++ K ID L+ + W R+ + I+ V E+ P + I+E V
Sbjct: 49 RAEGIIENKDAIDKLLDEL-SIDWPTERMVVTDRLIMEIAVFEMNYLKLSP-SIAINEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
++ + KF+NAVL KV+
Sbjct: 107 ELSKLYGTEKSYKFVNAVLSKVA 129
>gi|71066624|ref|YP_265351.1| NusB antitermination factor [Psychrobacter arcticus 273-4]
gi|119390801|sp|Q4FPZ1|NUSB_PSYA2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71039609|gb|AAZ19917.1| probable NusB antitermination factor [Psychrobacter arcticus 273-4]
Length = 375
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 17 GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
AR A+Q LY+ + + + V + ++ ++
Sbjct: 52 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 111
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ ++ LI+ L + ++LD + +IL G EL +P +V++ E + +
Sbjct: 112 DIPEQIDALNTLITQQLDRE--INKLDTVEHAILLIGAYELQNRLEIPYKVVLDEAMKLN 169
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F D K INAVLD+++ +
Sbjct: 170 NHFGATDAHKLINAVLDRMAVELRAPE 196
>gi|297155758|gb|ADI05470.1| RNA-binding Sun protein [Streptomyces bingchenggensis BCW-1]
Length = 485
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 12/174 (6%)
Query: 1 MTIQDNKK----DLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M+ Q + K ++ R+ A +AL +D ++ A +
Sbjct: 1 MSPQPGRPRRSAPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR---KARQD 57
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ D +++G + R+ D +I+ C+ +D + +L G +
Sbjct: 58 STEAKPFDARDAALATELVYGTLRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 115
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
L+ +P +S V +A KF+NAVL KV+ + V+
Sbjct: 116 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKVAANDLDGWLEKVAPP 168
>gi|313888508|ref|ZP_07822175.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845537|gb|EFR32931.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 430
Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+Q + + G E + + S D + + I GV+
Sbjct: 5 REKALQIINDVLYKGTFLEESLEILKA------------SNIDERDFAFIKEITTGVVRN 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ++D +I F+R+ I+ SIL + ++ VP I+ E V +A +
Sbjct: 53 KTYLDYVIRENSKV--RFNRIHKIILSILEMAIYQMYFLDKVPDYSIVDESVNLAKIYGN 110
Query: 140 GDEPKFINAVLDKVSRKE 157
F N +L +S+++
Sbjct: 111 KGSISFTNGILRSISKEK 128
>gi|295839959|ref|ZP_06826892.1| conserved hypothetical protein [Streptomyces sp. SPB74]
gi|295827723|gb|EFG65557.1| conserved hypothetical protein [Streptomyces sp. SPB74]
Length = 296
Score = 81.3 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 10/156 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R+ R+ A AL +D ++ E + + D +++
Sbjct: 25 RKDPVRVLAFDALRAVDERDAYANLVLPALLR-------EAREKGGFDARDAALATELVY 77
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + D +I++C+ +D + +L G +L+ +P +S V +A
Sbjct: 78 GTLRGRGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSATVELA 134
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+F+NAVL +++R + V+ +
Sbjct: 135 RVVLGDGRSRFVNAVLRRIARNDLDAWLAEVAPPFE 170
>gi|188526813|ref|YP_001909500.1| transcription antitermination protein NusB [Helicobacter pylori
Shi470]
gi|217033802|ref|ZP_03439227.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
gi|254778739|ref|YP_003056844.1| transcription antitermination protein NusB [Helicobacter pylori
B38]
gi|238691960|sp|B2UW05|NUSB_HELPS RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|188143053|gb|ACD47470.1| transcription antitermination protein NusB [Helicobacter pylori
Shi470]
gi|216943700|gb|EEC23143.1| hypothetical protein HP9810_877g6 [Helicobacter pylori 98-10]
gi|254000650|emb|CAX28559.1| N utilization substance protein B homolog (Protein nusB),
transcriptional antitermination factor [Helicobacter
pylori B38]
gi|261837458|gb|ACX97224.1| N utilization substance protein B/transcriptional antitermination
factor [Helicobacter pylori 51]
gi|297379224|gb|ADI34111.1| transcription antitermination factor NusB [Helicobacter pylori
v225d]
gi|308061306|gb|ADO03194.1| transcription antitermination protein NusB [Helicobacter pylori
Cuz20]
gi|308062871|gb|ADO04758.1| transcription antitermination protein NusB [Helicobacter pylori
Sat464]
gi|315585992|gb|ADU40373.1| transcription antitermination factor NusB [Helicobacter pylori 35A]
gi|317008681|gb|ADU79261.1| transcription antitermination protein NusB [Helicobacter pylori
India7]
gi|317178310|dbj|BAJ56098.1| transcription antitermination protein NusB [Helicobacter pylori
F30]
gi|317181291|dbj|BAJ59075.1| transcription antitermination protein NusB [Helicobacter pylori
F57]
gi|332672789|gb|AEE69606.1| transcription antitermination factor NusB [Helicobacter pylori 83]
Length = 138
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|226313315|ref|YP_002773209.1| ribosomal RNA small subunit methyltransferase [Brevibacillus brevis
NBRC 100599]
gi|226096263|dbj|BAH44705.1| probable ribosomal RNA small subunit methyltransferase
[Brevibacillus brevis NBRC 100599]
Length = 448
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 15/146 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L +++ Y + D +++G
Sbjct: 3 KKGARDIALDVLNRVEEHKS-----------YSNLELRNVLDRENLSAADAGLVTELVYG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK +D ++S + ++ + ++LR + ++ +P + + V IA
Sbjct: 52 TIQRKMTLDHVLSHFVGN----KKVQTWVRNLLRLSLYQIHFLDRIPERAAVHQAVEIAK 107
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +N VL V R+ ++
Sbjct: 108 KRGHQGIASMVNGVLRNVLRQPDVWE 133
>gi|93007217|ref|YP_581654.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
gi|119390802|sp|Q1Q833|NUSB_PSYCK RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|92394895|gb|ABE76170.1| NusB antitermination factor [Psychrobacter cryohalolentis K5]
Length = 315
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 4/147 (2%)
Query: 17 GIARLAAVQALYQIDIIGC--STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
AR A+Q LY+ + + + V + ++ ++
Sbjct: 14 RKARRFAMQGLYEWLVTDRRFDIDGKLGWKANAPHDIAARTRATNAMHTVHIGYYHEMMR 73
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ +D LIS L + ++LD + +IL G EL +P +V++ E + +
Sbjct: 74 DIPEQIDALDALISQHLDRE--INKLDTVEHAILLVGAYELQNRLEIPYKVVLDEAMKLN 131
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ F D K INAVLD+++ +
Sbjct: 132 NHFGATDAHKLINAVLDRMAVELRAPE 158
>gi|169350501|ref|ZP_02867439.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
gi|169292821|gb|EDS74954.1| hypothetical protein CLOSPI_01269 [Clostridium spiroforme DSM 1552]
Length = 134
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K ++ + R AV A+YQ +I +T E+ + + D E D ++
Sbjct: 1 MKKYRKK-LIREKAVIAIYQKLLIDITTEEVYNYL---------DSDKELANDKDDYDYC 50
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++I + + + ++ L + WS RL + +IL G EL+E VII+E
Sbjct: 51 VMLISSIANNLEKYKAEVAKHLKKGWSLERLSKMELAILLVGCYELLETDQSKE-VIINE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
V ++ + D KF+N VL+K+
Sbjct: 110 AVELSKKYCDDDVYKFVNGVLNKI 133
>gi|168485566|ref|ZP_02710074.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1087-00]
gi|183571084|gb|EDT91612.1| transcription antitermination factor NusB [Streptococcus pneumoniae
CDC1087-00]
Length = 140
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G + T+ + ++
Sbjct: 7 ESRRQLRKCAFQALMSLEF-GTNVETACRFAYTH---------DREDTDVQLPAFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
G+ +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGIQAKKEELDKQITQHLKVGWTIERLTLVERNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A DF +FIN +L + +E+
Sbjct: 116 AKDFSDQKSARFINGLLSQFVTEEQ 140
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A +ALY+I Y + + +I+GV
Sbjct: 12 ARTLAFEALYEIFEKN-----------AYANLTIQSILRWCPLKKEERHLLTELIYGVCR 60
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ + +IS L ++ + +L G+ +++ +P ++E V IA
Sbjct: 61 KYNYCLWMIS--LISDRPMFKIHPAVRILLALGIYQIVFLDRIPESAAVNETVKIAKKVT 118
Query: 139 YGDEPKFINAVLDKVSRKE 157
+ KFIN VL R+
Sbjct: 119 HIGNVKFINGVLRNFLRRR 137
>gi|329120994|ref|ZP_08249625.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
gi|327471156|gb|EGF16610.1| RNA methyltransferase Sun [Dialister micraerophilus DSM 19965]
Length = 448
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRG-IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+K S+ + RL A Q +Y+ I + Y + ++ L D
Sbjct: 1 MKNSNIKQINERLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKAL 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G+ + ++ ++ S +++ + +L G+ +LI +P ++
Sbjct: 50 ITELVYGICRKCNYLQYIVEKL--SNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVN 107
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E V + + +F+NA+L RK+
Sbjct: 108 ETVKLTKKITHQGNVRFVNAILRNFLRKK 136
>gi|301345751|ref|ZP_07226492.1| transcription antitermination protein NusB [Acinetobacter baumannii
AB056]
gi|301512968|ref|ZP_07238205.1| transcription antitermination protein NusB [Acinetobacter baumannii
AB058]
gi|301596175|ref|ZP_07241183.1| transcription antitermination protein NusB [Acinetobacter baumannii
AB059]
Length = 135
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 13/131 (9%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
AVQ +Y+ + EI + E+ VDL ++ ++ V+ + +
Sbjct: 18 FAVQGIYEWQMSHNPVHEI-----------EARTRAENAMHKVDLNYYHELLTQVIAQHE 66
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D L+ L + LD + + LR G EL + +P V++ E + +A F D
Sbjct: 67 DLDALLIPVLDRE--IDALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGAD 124
Query: 142 EPKFINAVLDK 152
K+IN VLD+
Sbjct: 125 SHKYINGVLDR 135
>gi|288549985|ref|ZP_05968867.2| transcription antitermination factor NusB [Enterobacter
cancerogenus ATCC 35316]
gi|288316874|gb|EFC55812.1| transcription antitermination factor NusB [Enterobacter
cancerogenus ATCC 35316]
Length = 118
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ ++ ++ + E VD+ +FR ++ GV ++D L+ L
Sbjct: 1 MSHNDIADVEYQFLS-----------EQDVKDVDVLYFRELLSGVATNSAYLDGLMKPYL 49
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ L + ++LR + EL + VP +V I+E + +A F D KF+N VLD
Sbjct: 50 SRL--LEELGQVEKAVLRIALFELSKRDDVPYKVAINEAIELAKTFGAEDSHKFVNGVLD 107
Query: 152 KVS 154
K +
Sbjct: 108 KAA 110
>gi|154505951|ref|ZP_02042689.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
gi|153793969|gb|EDN76389.1| hypothetical protein RUMGNA_03493 [Ruminococcus gnavus ATCC 29149]
Length = 448
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ + ++ + + + G ++
Sbjct: 8 RELVLAILMEVTQQNVYSHLALNAVLEKY----------QYLEKKERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +++ +++ ++ +ILR+ V +L SVP + +E V +A +
Sbjct: 58 MIELDYILNQFSKV--KVNKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
G F+N VL V+R +
Sbjct: 116 GTLRGFVNGVLRNVARGLDQVE 137
>gi|67924848|ref|ZP_00518244.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
gi|67853307|gb|EAM48670.1| Fmu, rRNA SAM-dependent methyltransferase [Crocosphaera watsonii WH
8501]
Length = 452
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 13/144 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L +ID T ++ D +++G+
Sbjct: 8 SNARQLALKILLKIDRKNSYTDVALNRALNQSN-----------LSSSDRSLCTELVYGI 56
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ +D LI + + L IL G+ +L +P ++ V +A D
Sbjct: 57 IRHQRTLDSLIDQLGKK--KAQQQPPNLRRILHIGLYQLRYLDHIPPSAAVNTSVDLAKD 114
Query: 137 FFYGDEPKFINAVLDKVSRKEEIK 160
+N +L + R +
Sbjct: 115 NKLQRLSGVVNGILRQYIRSIQGN 138
>gi|194333562|ref|YP_002015422.1| sun protein [Prosthecochloris aestuarii DSM 271]
gi|194311380|gb|ACF45775.1| sun protein [Prosthecochloris aestuarii DSM 271]
Length = 449
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 13 SHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
++ AR A+ L + + + + + Y A D
Sbjct: 1 MQKKTSINAREIALLTLVECEREEVKSEQALHRYLNKYKTARN-----------DSALAT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G++ +Q ID +I++ + L +ILR GV +L +P +S+
Sbjct: 50 ELVNGILRFRQSIDSIITAFY--HHKLKKASPFLVNILRIGVYQLRYLDRIPDWAAVSQC 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V +A + + +N VL V+
Sbjct: 108 VDLARKYKGQHIARIVNGVLRSVA 131
>gi|312622738|ref|YP_004024351.1| nusb antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
gi|312203205|gb|ADQ46532.1| NusB antitermination factor [Caldicellulosiruptor kronotskyensis
2002]
Length = 134
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRF-EDDTQDIIEFYKRFR-----ELNQDEDFKDIDEKYLEKLLKGVIQNQQRI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P
Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|257886037|ref|ZP_05665690.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
gi|257821893|gb|EEV49023.1| rRNA SAM-dependent methyltransferase [Enterococcus faecium
1,231,501]
Length = 452
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ +S D+ F +I+G + ++ ++ ++ + ++D +
Sbjct: 28 AYSNLLLNEMIKQSELNQKDVGLFTELIYGTISHQRLLEFYVAPLIA---KAKKVDDWVK 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++L V +L VP I++E V IA KF+N VL R+
Sbjct: 85 TLLYLSVYQLEFLDKVPAHAILNEAVEIAKVKGNPGTGKFVNGVLRNYQRQ 135
>gi|307636683|gb|ADN79133.1| Transcription termination protein [Helicobacter pylori 908]
gi|325995267|gb|ADZ50672.1| Transcription termination protein [Helicobacter pylori 2018]
gi|325996871|gb|ADZ49079.1| Transcription termination protein [Helicobacter pylori 2017]
Length = 138
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A V+ LY + +I S E + L + +
Sbjct: 1 MATRTQARGAVVELLYAFESGNEEIKKIASSMLE-----------EKKIKNNQLVFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++R ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLERINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|322387215|ref|ZP_08060825.1| N utilization substance protein B [Streptococcus infantis ATCC
700779]
gi|321141744|gb|EFX37239.1| N utilization substance protein B [Streptococcus infantis ATCC
700779]
Length = 140
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ D + ++
Sbjct: 7 ESRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDDEVKLP---------SFLIDLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 SGVQAQKEELDKQITQHLKSGWTIERLTLVEKNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEE 158
A F +FIN +L + +E
Sbjct: 116 AKSFSDQKSARFINGLLSQFVTEEN 140
>gi|124005043|ref|ZP_01689885.1| NusB antitermination factor [Microscilla marina ATCC 23134]
gi|123989295|gb|EAY28856.1| NusB antitermination factor [Microscilla marina ATCC 23134]
Length = 462
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
DL S R + + AV+ + I + + +E + EL S D+ +
Sbjct: 299 DLSWSENRKVVQSMAVKTIKAI-MGDTEEEDGDAEETEITINKNFELSPLSKNWDEDVVF 357
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ + + ++ Q + +I+ T+ W RL +I IL+ + E+I +S+PV+V I+
Sbjct: 358 YKNLYNFNVEGNQRYEDIIAKK-TKNWDIERLALIDKVILKMAICEMINFYSIPVKVTIN 416
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGC 164
EY+ +A + KF+N +LD +++ + +IK+SG
Sbjct: 417 EYIELAKTYSTPKSKKFVNGLLDSIAQDLIEQGDIKKSGR 456
>gi|322391457|ref|ZP_08064926.1| N utilization substance protein B [Streptococcus peroris ATCC
700780]
gi|321145540|gb|EFX40932.1| N utilization substance protein B [Streptococcus peroris ATCC
700780]
Length = 140
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ D + ++
Sbjct: 7 ESRRELRKCAFQALMSLEY-GSDIETACRFAYTHDREDDEVKLP---------SFLINLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K+ +D I+ L W+ RL ++ ++LR GV E+ P V ++E + +
Sbjct: 57 TGVQAQKEELDKQITQHLKAGWTIDRLTLVEKNLLRLGVFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVL 150
A F +FIN +L
Sbjct: 116 AKSFSDQKSARFINGLL 132
>gi|317010284|gb|ADU84031.1| transcription antitermination protein NusB [Helicobacter pylori
SouthAfrica7]
Length = 138
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A ++ LY + +I E + L + +
Sbjct: 1 MATRTQARGAVIELLYAFESGNEEIKKIAPSMLE-----------EKKIKNNQLAFALSL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+++ ID LI L + W F RL + +ILR G E+ + +II+E +
Sbjct: 50 FNGVLEKINEIDALIEPHLKD-WDFKRLGSMEKAILRLGAYEIGFTPTQNP-IIINECIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + PKF+NA+LD +S+K
Sbjct: 108 LGKLYAEPNTPKFLNAILDSLSKKL 132
>gi|270290371|ref|ZP_06196596.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici 7_4]
gi|270281152|gb|EFA26985.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici 7_4]
Length = 444
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ + R AV AL ID Y ++ ++ VD
Sbjct: 1 MTELKNNPRDLAVDALESIDEG------------AYSNLELNQVIQDADLSEVDKHLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + ID +++ L + + ++LR + ++ VP I +E +
Sbjct: 49 LVYGVLQHRLTIDFYLANFLQRP---EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETI 105
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA K + VL R+
Sbjct: 106 EIAKRRGSDGVRKMVTGVLRSYQRQ 130
>gi|163815235|ref|ZP_02206612.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
gi|158449430|gb|EDP26425.1| hypothetical protein COPEUT_01395 [Coprococcus eutactus ATCC 27759]
Length = 452
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L I+ + + D + ++ GV ++
Sbjct: 6 REVVLSILLDIEKNHTFSNTALGTAL----------RANQFMSKQDRAYITRMVEGVTEK 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++ ++ ++ +LR G E+ SV + V +A D +
Sbjct: 56 RMRLDYIVNQFSKT--KINKCKPLIRCVLRMGTYEIFYMDSVQDHTACNLCVKLAADHGF 113
Query: 140 GDEPKFINAVLDKVSRKEE 158
G F+N VL ++R ++
Sbjct: 114 GSLRGFVNGVLRNIARNKD 132
>gi|317129258|ref|YP_004095540.1| sun protein [Bacillus cellulosilyticus DSM 2522]
gi|315474206|gb|ADU30809.1| sun protein [Bacillus cellulosilyticus DSM 2522]
Length = 449
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
I + + Y E +S D+ +++G + ++ +D + +L
Sbjct: 17 IEKQQAYSHLLLNETIKKSNLNQKDVPLLTELVYGTIQYQKLLDFYLKPFSKR--PLEKL 74
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ + +LR + +++ +P + E V IA + +N +L + R E
Sbjct: 75 EPWVLVLLRLTLYQMVYLDRIPDRAAVHEAVQIAKKRGHQGISGMVNGILRSIQRNE 131
>gi|315612653|ref|ZP_07887565.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
sanguinis ATCC 49296]
gi|315315240|gb|EFU63280.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
sanguinis ATCC 49296]
Length = 437
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSEADKSLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A +
Sbjct: 56 RKLTLEWYLSHFIEDRDKL---DNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKERK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|229129141|ref|ZP_04258114.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
gi|228654378|gb|EEL10243.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-Cer4]
Length = 429
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|153810477|ref|ZP_01963145.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
gi|149833656|gb|EDM88737.1| hypothetical protein RUMOBE_00858 [Ruminococcus obeum ATCC 29174]
Length = 180
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
RR R + L+ + D D E +
Sbjct: 2 RRSEQREHIFKLLFMTQFNSEN---------EMSDQVSMYFDTLGELEEKDQEAIQNKYQ 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+++ ID +++ + W +R++ + + LR V E+ VPV V I+E V +A
Sbjct: 53 HILEHLDEIDQILNEY-SRGWKTTRMNRVDLTALRLAVYEMKMDEEVPVGVAINEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS--RKEEIKRSGCVSAIT 169
F D F+N +L K++ +K+ + T
Sbjct: 112 KLFGGEDSGSFVNGILGKIASGKKDSGEEHKKPRRQT 148
>gi|307708254|ref|ZP_07644721.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
12261]
gi|307615700|gb|EFN94906.1| transcription antitermination factor NusB [Streptococcus mitis NCTC
12261]
Length = 141
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-GTDMETACHFAYTHDREDEDVQIP---------AFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEENE 141
>gi|23098962|ref|NP_692428.1| hypothetical protein OB1507 [Oceanobacillus iheyensis HTE831]
gi|22777190|dbj|BAC13463.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 448
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 3/129 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQ+ I + + + D +++G + + +D +
Sbjct: 3 YQLRNTMLDILIRIEKDHGFSNLLLNHELKQRQLNEKDERLLTEVVYGSLQHQMTLDYYL 62
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
S + K D+ + S+LR ++I VP +I E V IA + F+N
Sbjct: 63 SKFVKSKKKL---DIWVQSLLRMSFYQMIYLEKVPDHAVIHESVEIAKQRGHKGISSFVN 119
Query: 148 AVLDKVSRK 156
VL + R+
Sbjct: 120 GVLRSLQRQ 128
>gi|304384736|ref|ZP_07367082.1| transcription antitermination factor NusB [Pediococcus acidilactici
DSM 20284]
gi|304328930|gb|EFL96150.1| transcription antitermination factor NusB [Pediococcus acidilactici
DSM 20284]
Length = 127
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 13/138 (9%)
Query: 20 RLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
R +A + ++ + E+ + D + ++ GV +
Sbjct: 2 RESAFKMIFAQSVNPDADPEELKKQVLEEFHETDVADP-----------FLDNLVTGVQE 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
I+ I L W+ +RL IL+ G E+ VP V I+E + +A +
Sbjct: 51 NVSSINETIGKELKAGWTVNRLANPDRVILQIGTYEIKHTE-VPNSVAINEALELAKKYT 109
Query: 139 YGDEPKFINAVLDKVSRK 156
KFIN VL V++
Sbjct: 110 DEKARKFINGVLSNVAKD 127
>gi|228954142|ref|ZP_04116170.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229071363|ref|ZP_04204586.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|229081120|ref|ZP_04213630.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228702164|gb|EEL54640.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock4-2]
gi|228711817|gb|EEL63769.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
F65185]
gi|228805462|gb|EEM52053.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 429
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|309798767|ref|ZP_07693031.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1302]
gi|308117584|gb|EFO54996.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
infantis SK1302]
Length = 437
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L E + + Y A + S D +++G +
Sbjct: 7 ARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V IA
Sbjct: 56 RKLTLEWYLSHFIEDRDKL---DNWLYVLLLMSVYQLQYLDKLPDHAVVNEAVEIAKSRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|331004329|ref|ZP_08327804.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411395|gb|EGG90810.1| hypothetical protein HMPREF0491_02666 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 444
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 14/143 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ R ++ L I++ + ++I S D +F +HG
Sbjct: 3 KTNIRALVLEVLLLINVEKEYSHKVIDMALEKY----------SYLSKSDRGFFSKAVHG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V++ + +D +I R+ ++ ILR + +++ VP +I+E V +
Sbjct: 53 VIEYRLQLDYIIKKYNNG----KRIKPVIREILRMSIYQMLYMDRVPDRAVINEAVNLVK 108
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
F+N +L K+S +++
Sbjct: 109 LRRLPGLTGFVNGILRKISGEKD 131
>gi|296111669|ref|YP_003622051.1| transcription antitermination protein NusB [Leuconostoc kimchii
IMSNU 11154]
gi|295833201|gb|ADG41082.1| transcription antitermination protein NusB [Leuconostoc kimchii
IMSNU 11154]
Length = 138
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R AA Q L+ ++ S +L + ++ +++G
Sbjct: 6 RHESRQAAFQVLFALEKDPQSNN-------------IDKLYDIVLAGKDYDDYLPRLVNG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ K +D I++ L + W+ +RL+ ILR V EL+ VP +V I E + +
Sbjct: 53 ILGTKTELDEQIAAHLADGWAINRLNKADLIILRLAVYELLNNL-VPYKVAIDEALILTK 111
Query: 136 DFFYGDEPKFINAVLDKVS 154
F D KF+N VL +
Sbjct: 112 TFSDEDSRKFVNGVLKNFA 130
>gi|229086418|ref|ZP_04218594.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
gi|228696934|gb|EEL49743.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-44]
Length = 431
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 8 AYSNLLLNNLIEKSEIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVK 62
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP +I E V IA + +N VL + R+
Sbjct: 63 VLLRLSLYQMIYLDRVPERAVIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 113
>gi|325068837|ref|ZP_08127510.1| NusB antitermination factor [Actinomyces oris K20]
Length = 163
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 5/142 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A++ L++ D G + E E ++ V S + R
Sbjct: 19 PVTARTKARRRAIEILFEADQRGMLSDEGAEELRSFAQL----RAVSSANHTEAPAYTRE 74
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV D +D I + W+ R+ + +I R E++ V V + E +
Sbjct: 75 ILNGVCDHLDDVDETI-QTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAM 133
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
++ + P+++ +L ++
Sbjct: 134 TLSRMLSTDESPRYLGGLLGRI 155
>gi|301167989|emb|CBW27575.1| putative N utilisation protein [Bacteriovorax marinus SJ]
Length = 157
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 10 LKLSHRRGIARLAAVQALY----------QIDIIGCSTTEIISEYETYRFC--ADTELDV 57
+ + + IAR + + +Y ++ + E E + E
Sbjct: 1 MSNFNNKTIAREFSFKLIYKVLCGNENLLELMLSKNPKAEYERFMEEFTNSCIEPDEEHP 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ + +I GV K ++ IS L K ++L+ I ++L G E+
Sbjct: 61 NNQLPSGAQNFALSLIDGVFTNKASLEDEISKHL-RKRKINQLEKIDYALLMLGCYEIQN 119
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ P V+I E V +A F D FIN LD + +
Sbjct: 120 VDATPKAVVIDEMVNLARKFGTADTYSFINGTLDSIGK 157
>gi|160915119|ref|ZP_02077332.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
gi|158432918|gb|EDP11207.1| hypothetical protein EUBDOL_01127 [Eubacterium dolichum DSM 3991]
Length = 126
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A+ +LYQ ++ E + E+ + +
Sbjct: 1 MTLSRHKLREIAMTSLYQHFLLSKDIKECVY---------------ENTQSNEIDPFLYT 45
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I + K I L + W+F RL + +IL EL + P ++I E V
Sbjct: 46 ITIDAIRYKDTYVGHIDETLRDDWTFERLGYVEKAILLMAACELDF-ETAPKAIVIDEAV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A + D + IN VLD++
Sbjct: 105 NLAKKYCDEDTYRLINGVLDRL 126
>gi|116625277|ref|YP_827433.1| NusB antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
gi|122252386|sp|Q01T72|NUSB_SOLUE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116228439|gb|ABJ87148.1| NusB antitermination factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 146
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 11/133 (8%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q L+ D + I+ Y + + + ++ G ++ +
Sbjct: 12 LQILFIWDARKQPVEDAINAYYDTLYSDEKPERD---------PFVIDLVRGTVEHLAEV 62
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I+ E W R+ + +ILR V E+ P V I E + +A F +
Sbjct: 63 DDRITRH-AEHWRMERMPAVDRNILRLAVYEMT-RGGTPAPVTIDEALELARKFSNEESV 120
Query: 144 KFINAVLDKVSRK 156
+F+N VLD V R+
Sbjct: 121 QFVNGVLDAVRRE 133
>gi|291519195|emb|CBK74416.1| transcription antitermination factor NusB [Butyrivibrio
fibrisolvens 16/4]
Length = 140
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R +A++ + +I + R A+TE ++ D E+ +
Sbjct: 2 NRHEVRKEVFKAVFMNEFHDADDMKSVIDTFLQGRNNAETEDLAKNNKTPEDEEYIKTKS 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
++ + ID +I+ + W +R+ + +++R + E+ ++PV V I+E V +
Sbjct: 62 EAIIAKLPEIDEMINKSVDG-WKTTRMAKVDLTLIRLALYEIKF-ENIPVGVAINEAVTL 119
Query: 134 AHDFFYGDEPKFINAVLDKVS 154
A +F F+N L K+
Sbjct: 120 ADEFGTDSSAGFVNGALAKLV 140
>gi|304384751|ref|ZP_07367097.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
gi|304328945|gb|EFL96165.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
acidilactici DSM 20284]
Length = 444
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ + R AV AL ID Y ++ ++ VD
Sbjct: 1 MTELKNNPRDLAVDALESIDEG------------AYSNLELNQVIQDADLSEVDKHLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + ID +++ L + + ++LR + ++ VP I +E +
Sbjct: 49 LVYGVLQHRLTIDFYLANFLQRP---EQTPRWVINLLRTAIFQMEFLDRVPTFAIFNETI 105
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA K + VL R+
Sbjct: 106 EIAKRRGSDGVRKMVTGVLRSYQRQ 130
>gi|229111336|ref|ZP_04240889.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
gi|228672112|gb|EEL27403.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-15]
Length = 429
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|331086043|ref|ZP_08335126.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406966|gb|EGG86471.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 452
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L +I G + I + + ++ G ++R
Sbjct: 8 RELILGVLLEITRDGVYSHIAIRNVLEKY----------QYLDKKERAFITRVVEGTLER 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +++ ++ +ILR+ V +L VP + +E V +A +
Sbjct: 58 MIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+N VL ++R + R
Sbjct: 116 RSLKGFVNGVLRTIARNMDQIR 137
>gi|289168504|ref|YP_003446773.1| transcription termination factor nusB [Streptococcus mitis B6]
gi|288908071|emb|CBJ22911.1| transcription termination factor nusB [Streptococcus mitis B6]
Length = 139
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-DTDVETACHFAYTH---------DREDADVQIPAFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGVQTQKDELDKQINQHLKPGWTVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEE 139
>gi|322377045|ref|ZP_08051537.1| transcription antitermination factor NusB [Streptococcus sp. M334]
gi|321281758|gb|EFX58766.1| transcription antitermination factor NusB [Streptococcus sp. M334]
Length = 139
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-GTDVETACRFAYTH---------DREDADVQIPAFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEE 139
>gi|322392343|ref|ZP_08065804.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
gi|321144878|gb|EFX40278.1| RNA methyltransferase Sun [Streptococcus peroris ATCC 700780]
Length = 437
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L E + + Y + S VD +++G +
Sbjct: 7 ARSLALEVL-----------EDVLVNQAYSNITLNKHLKGSQLSVVDKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ IS + ++ D L +L + +L +P +++E V IA
Sbjct: 56 RKLTLEWYISHFIEDRDKL---DSWLYVLLLMSLYQLQYLDKLPDHAVVNEAVEIAKSHK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 450
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R +Q L +I+ G + I + + + + G ++
Sbjct: 8 RELILQILLEIEEEGKHSHIAIRNALSKY----------QFLPRQERAFITRVCEGTLEY 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I S S ++ ++ ILR+ V ++ SVP + +E V +A +
Sbjct: 58 RILIDYIIDSYSKV--SVDKMKPVIREILRSAVYQIRFMDSVPDSAVCNEAVKLAQRKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+N VL ++R+ + +
Sbjct: 116 YSLKPFVNGVLRTIAREWKNLK 137
>gi|229820523|ref|YP_002882049.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
gi|259514802|sp|C5C681|NUSB_BEUC1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|229566436|gb|ACQ80287.1| NusB antitermination factor [Beutenbergia cavernae DSM 12333]
Length = 153
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 12/148 (8%)
Query: 24 VQALYQIDI----IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
+ LY+ D G + R E+ I+ GV
Sbjct: 12 LDLLYEADQKAVSGGAPASGDAVALLAERIATPHG-------EAPMREYTVEIVEGVAAH 64
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID L+ + WS R+ + +ILR GV EL+ VP V + E V +A +
Sbjct: 65 QARIDELL-ETYAQGWSLERMPAVDRAILRIGVWELLFNDDVPDAVAVDEAVALAAELST 123
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
D P F+N +L ++ R + R +A
Sbjct: 124 DDSPTFVNGLLGQLLRLAPVLRDEEAAA 151
>gi|313637331|gb|EFS02816.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL S4-171]
Length = 446
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VREIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
Length = 431
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 13/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR V+ L ++D Y E S + D ++ + +GV++
Sbjct: 4 ARWYTVRLLTKLDENNS-----------YSNILLDESLSRSDFDKRDKKFIAALFYGVIE 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D +I S+L+ L +ILR G+ +L SVP + E V +A
Sbjct: 53 RRLTLDAIIVDLSKN--PKSKLNYTLRNILRCGLYQLKYMDSVPDNAAVDESVELAKKCR 110
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
P F N +L + R+ +
Sbjct: 111 NPAAPGFTNGLLREFIRRSKE 131
>gi|313891936|ref|ZP_07825537.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
gi|313119579|gb|EFR42770.1| ribosomal RNA small subunit methyltransferase B [Dialister
microaerophilus UPII 345-E]
Length = 448
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 60/149 (40%), Gaps = 14/149 (9%)
Query: 10 LKLSHRRG-IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+K S+ + RL A Q +Y+ I + Y + ++ L D
Sbjct: 1 MKNSNIKQINERLLAYQCIYE-----------IFYRDAYANLSLQKIFKSHKLLSRDKAL 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G+ + ++ ++ S +++ + +L G+ +LI +P ++
Sbjct: 50 ITELVYGICRKCNYLQYIVEKL--SNRSINKIHKSVRILLYLGLYQLIYLDKIPESAAVN 107
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E V + + +F+NA+L RK+
Sbjct: 108 ETVKLTKKITHQGNVRFVNAILRNFLRKK 136
>gi|228960081|ref|ZP_04121745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229047552|ref|ZP_04193142.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|229146436|ref|ZP_04274807.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|229152064|ref|ZP_04280259.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|229192034|ref|ZP_04319004.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228591585|gb|EEK49434.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
ATCC 10876]
gi|228631413|gb|EEK88047.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
m1550]
gi|228637069|gb|EEK93528.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST24]
gi|228723799|gb|EEL75154.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH676]
gi|228799597|gb|EEM46550.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 429
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|313632754|gb|EFR99722.1| ribosomal RNA small subunit methyltransferase B [Listeria seeligeri
FSL N1-067]
Length = 446
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VREIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK + ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLXYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|225569232|ref|ZP_03778257.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
15053]
gi|225162031|gb|EEG74650.1| hypothetical protein CLOHYLEM_05314 [Clostridium hylemonae DSM
15053]
Length = 434
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L QI G + + +I+G ++
Sbjct: 8 RELILDTLLQITREGEYCHIALRNVLEKY----------QYLDKKQRAFITRVINGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +R+ ++ +I+R+GV +L SVP + +E V +A +
Sbjct: 58 LIEIDYIINQFSKV--KVNRMKPVIGAIIRSGVYQLKYMDSVPDSAVCNEAVKLAEKRGF 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL +SR
Sbjct: 116 ASLKAFVNGVLRNISRNMN 134
>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
Length = 446
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 13/142 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA+ L QI + G Y A + + +D + +++G +
Sbjct: 9 REAALLILEQIFLRG-----------AYANLALDQGLRGATLSPLDRKLTTELVYGTVKT 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S + +LD ++ ILR G +L+ +P +E V +A + +
Sbjct: 58 MGTLDWYLSRVVNR--PLRKLDPLVLVILRLGAYQLLYLDRIPASAACNESVKLAKKWVH 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
K +N L +++R + +
Sbjct: 116 EGAGKLVNGALRQLARTRDQWK 137
>gi|220931836|ref|YP_002508744.1| sun protein [Halothermothrix orenii H 168]
gi|219993146|gb|ACL69749.1| sun protein [Halothermothrix orenii H 168]
Length = 440
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 15/142 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
I+R A++ L +ID G + ++++ V D + +++GV
Sbjct: 2 SISRKVAIKVLIEID-KGAYSNLVLNKELN------------KVSDKRDRAFITELVYGV 48
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K+ +D ++S ++D + S LR + ++ SVP + E V
Sbjct: 49 LRQKKRLDYMLSCFSKR--PLRKMDNEVLSALRVALYQIEYTDSVPARAAVYETVEALKS 106
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
F KF N VL R ++
Sbjct: 107 FTGHGAVKFTNGVLRSYLRNKD 128
>gi|312127939|ref|YP_003992813.1| nusb antitermination factor [Caldicellulosiruptor hydrothermalis
108]
gi|311777958|gb|ADQ07444.1| NusB antitermination factor [Caldicellulosiruptor hydrothermalis
108]
Length = 134
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY T +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRF-EDDTQDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P
Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRMAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|169333804|ref|ZP_02860997.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
17244]
gi|169259369|gb|EDS73335.1| hypothetical protein ANASTE_00190 [Anaerofustis stercorihominis DSM
17244]
Length = 132
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +AR + ++QI+ +S E+ + +
Sbjct: 2 KRDVARDLVYKIIFQINFHDDFAERYEQMIL------------DSGIKGTQGEYAKKTVK 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G++D + ID I L W F RL + ++LR GV E++ +P V ++E V +A
Sbjct: 50 GILDNLEEIDDTIKDNLKG-WKFERLSTHVIAVLRLGVFEIMYNEDIPPLVGLNEAVSLA 108
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
H + E F+N +L+ V +K
Sbjct: 109 HTYSDEKEATFVNGLLNSVYKK 130
>gi|237752651|ref|ZP_04583131.1| transcription termination protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376140|gb|EEO26231.1| transcription termination protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 199
Score = 80.6 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 13/144 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR+A Q LY ++ + E+ E + E+ + +
Sbjct: 1 MATRTHARVAVAQLLYAYGSGNDGISKFVE-----------EILSEHKIKNAQNEFAKTL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++ + +DL I + W F R+ + +ILR G E+I + ++I+E +
Sbjct: 50 FNGVLEHLEEVDLRI-KHQIKNWDFERIGDMERAILRLGAYEIIFS-GMDKAIVINEALE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRK 156
I +F KFIN +LD +++
Sbjct: 108 ITKNFSNETSTKFINGILDGIAKN 131
>gi|120403672|ref|YP_953501.1| Fmu (Sun) domain-containing protein [Mycobacterium vanbaalenii
PYR-1]
gi|119956490|gb|ABM13495.1| Fmu (Sun) domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 449
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 15/159 (9%)
Query: 12 LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ +R AR AA L +SE + Y A L + D +
Sbjct: 1 MKRKRLDPARQAAFDVL-----------RAVSERDAYANLALPALLRDRGITGRDAAFAT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +G + +D +I++ ++D +L +LR G +L+ V +S
Sbjct: 50 ELTYGTCRTRGLLDAVIAA--AAGRPVDKIDPVLLDLLRLGSYQLL-RTRVDDHAAVSTT 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V A F F+N VL ++R++E ++
Sbjct: 107 VDQAGIEFDSSRAGFVNGVLRTIARRDEASWVEELAPSA 145
>gi|160947101|ref|ZP_02094268.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
gi|158446235|gb|EDP23230.1| hypothetical protein PEPMIC_01033 [Parvimonas micra ATCC 33270]
Length = 434
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 2/127 (1%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ + + + + +D ++ R I++G ++ + ++D +I
Sbjct: 1 MRKLAIEILCEIKDENSNSTNLLNKSTKNISDLDSKFLREIVYGTLENRIYLDYIIKKLC 60
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + + +ILR + ++I +P II+E V + F F+N L
Sbjct: 61 KL--RIKKFNPYILNILRISIYQIIFMDKIPEFAIINEAVNLTKVFKLKKFSSFVNGSLR 118
Query: 152 KVSRKEE 158
R +E
Sbjct: 119 NFLRNKE 125
>gi|225570633|ref|ZP_03779656.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
15053]
gi|225160551|gb|EEG73170.1| hypothetical protein CLOHYLEM_06733 [Clostridium hylemonae DSM
15053]
Length = 132
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 10/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + ++ ++ G E+ + Y D+ DL++
Sbjct: 2 KRTQLREHIFKMVFCMEFCGE--EELPEQLALYEEQLDSA-------GEEDLKYISGKSR 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ + + ID LI+ +T W R++ + +ILR V E+ VP V I E V +A
Sbjct: 53 NIAAKTEEIDRLINEHVTG-WKTGRMNKVDLTILRLAVYEMNWDEDVPTGVAIDEAVELA 111
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ + P F+N VL K++
Sbjct: 112 KKYSGEEGPAFVNGVLAKLA 131
>gi|302533355|ref|ZP_07285697.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
C]
gi|302442250|gb|EFL14066.1| ribosomal RNA small subunit methyltransferase B [Streptomyces sp.
C]
Length = 488
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 21/165 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIA-----------RLAAVQALYQIDIIGCSTTEIISEYETYRF 49
M+ Q ++ S A R+ A +AL +D ++
Sbjct: 1 MSEQPRRRPAPKSGTGKQAKPYRRPQKDPVRMLAFEALRAVDERDAYANLVLPPLL---- 56
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + + D +++G + R+ D +I++C+ +D + +L
Sbjct: 57 ---KKARQDERFQARDAALATELVYGTLRRQGTYDAVIAACVDR--PLREVDPPVLDVLS 111
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
G +L+ +P +S V +A KF+NAVL K++
Sbjct: 112 LGAHQLLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 155
>gi|300781122|ref|ZP_07090976.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
gi|300532829|gb|EFK53890.1| RNA methyltransferase Sun [Corynebacterium genitalium ATCC 33030]
Length = 486
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 14/167 (8%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
K+ S AR AA A+ +++ ++ + R
Sbjct: 32 NTQKRPQAHSRIGDAAREAAFDAVLRVETEDAFGNLVLPQILRER-----------KVKG 80
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + +G + +D +I+ C + + LD + + LR G +L+ V
Sbjct: 81 RDAAFATELAYGTLRTLGVLDAVIAECSSR--PLTELDPAVLTALRLGTYQLL-MTRVDD 137
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ V +A G F+N +L V+R + ++ +
Sbjct: 138 HAAVDTSVRLAEAAGQGKAKGFVNGILRTVARTSAQEWMDKLAPSDE 184
>gi|228940953|ref|ZP_04103512.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228973882|ref|ZP_04134458.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228980472|ref|ZP_04140782.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228779292|gb|EEM27549.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis Bt407]
gi|228785907|gb|EEM33910.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228818789|gb|EEM64855.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 429
Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|315303726|ref|ZP_07874237.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
gi|313627903|gb|EFR96525.1| ribosomal RNA small subunit methyltransferase B [Listeria ivanovii
FSL F6-596]
Length = 446
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VREIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|154508791|ref|ZP_02044433.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
17982]
gi|153798425|gb|EDN80845.1| hypothetical protein ACTODO_01300 [Actinomyces odontolyticus ATCC
17982]
Length = 490
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
+S RR A R A L++++ G T I+ + A + +
Sbjct: 1 MSERRYADGYRKLRKADEPRRIAYDVLHEVETQGAFTNIILPK-------ALRQARRDGH 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + ++HG + +D +IS + + LD +LR G +L++
Sbjct: 54 FSDRDAAFTSELVHGTLRAIGRLDWVISRHIDR--PLADLDPRALVVLRMGAHQLLDMR- 110
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
VP +S V +A + +F+NAVL ++R++ +R + AI
Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFVNAVLRSITREDPSEREAAMDAIA 159
>gi|229180141|ref|ZP_04307485.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
gi|228603350|gb|EEK60827.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
172560W]
Length = 429
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
Length = 448
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 18/149 (12%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ R AA + L +ID +I + F D
Sbjct: 1 MSTTNPRS----AAFEILLRIDKERSYADILIDRELSSGF-----------LQGPDRGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ R+ +D +I+ +K RL+ + +LR G+ ++ VPV ++E
Sbjct: 46 TELVYGVLRRQGTLDYIINRFSKQKS--ERLERSVLVLLRIGLYQIFYLDRVPVSAAVNE 103
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +A F+NAVL R+ +
Sbjct: 104 TVKLAKVL-APRASGFVNAVLRSADRERD 131
>gi|146297084|ref|YP_001180855.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410660|gb|ABP67664.1| sun protein [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 433
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA +++I+ + + E + D F ++HGV+
Sbjct: 6 RRAAFLVIFEIESRKNVNADALM-----------EKYHHKLKKTEDRALFVELVHGVLRY 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D I+ + + + +ILR EL+ +P ++E +A +
Sbjct: 55 KNILDYYINFVAKKGVKDKK----ILNILRIATYELLFLDKIPDYATVNEACELAKN-VN 109
Query: 140 GDEPKFINAVLDKVSRKEEIKRSG 163
++ F+NA+L + R+++
Sbjct: 110 KNQKDFVNAILRNIIRRKDEIEKA 133
>gi|307706079|ref|ZP_07642898.1| transcription antitermination factor NusB [Streptococcus mitis
SK321]
gi|307618479|gb|EFN97627.1| transcription antitermination factor NusB [Streptococcus mitis
SK321]
Length = 139
Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 11/144 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-GTDMETACHFAYTH---------DREDADVQIPAFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGVQAQKDELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKE 157
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEE 139
>gi|293376577|ref|ZP_06622805.1| transcription antitermination factor NusB [Turicibacter sanguinis
PC909]
gi|325839451|ref|ZP_08166890.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
gi|292644803|gb|EFF62885.1| transcription antitermination factor NusB [Turicibacter sanguinis
PC909]
gi|325490571|gb|EGC92887.1| transcription antitermination factor NusB [Turicibacter sp. HGF1]
Length = 159
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE-------------SVYL 62
R + R AVQ LYQ+++ + E I E E
Sbjct: 3 RHVIRQFAVQTLYQMEVGQLTREEAIENIELMVESLKEEAIELMAEEVTPHQALQMEQTF 62
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+D +F +++GV+ K+ +D +I+ L WS SRL+ + +ILR E+ C
Sbjct: 63 KLDEFYF-ELVNGVLTHKEQLDQIINDNL-RGWSLSRLNKVDKAILRLATYEMKYCQDTA 120
Query: 123 VEVIISEYVCIAHDF---FYGDEPKFINAVLDKVSR 155
+++I E + + +F G F N VLD++S+
Sbjct: 121 KKIVIDEALELTKEFSDTGDGKARSFNNKVLDQISK 156
>gi|228909690|ref|ZP_04073513.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
gi|228849979|gb|EEM94810.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 200]
Length = 429
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|260584743|ref|ZP_05852489.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
gi|260157766|gb|EEW92836.1| ribosomal RNA small subunit methyltransferase B [Granulicatella
elegans ATCC 700633]
Length = 441
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 14/140 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A V L Q++ Y + ++ + + D + +G +
Sbjct: 3 KVRNAVVDLLVQVEQDQS-----------YSTISLKKVIEQQKWTAKDKGLLTELFYGTI 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
RK ID ++ + ++ + +LR + +++ +P I E V IA
Sbjct: 52 QRKMTIDFYLAPYI---QKAKKIQPWVKQLLRISIYQMVFLDKIPDHAAIFEAVQIAKKR 108
Query: 138 FYGDEPKFINAVLDKVSRKE 157
+ KF+N VL R +
Sbjct: 109 GHQGIAKFVNGVLRNFQRND 128
>gi|325662242|ref|ZP_08150857.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325471494|gb|EGC74715.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 452
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L +I G + I + + ++ G ++R
Sbjct: 8 RELILGVLLEITRDGVYSHIAIRNVLEKY----------QYLDKKERAFITRVVEGTLER 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +++ ++ +ILR+ V +L VP + +E V +A +
Sbjct: 58 MIEIDYIINQF--SNVKVNKMKPVIRTILRSAVYQLKYMDGVPDSAVCNEAVKLAEKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+N VL ++R + R
Sbjct: 116 RSLKGFVNGVLRTIARNMDQIR 137
>gi|168210626|ref|ZP_02636251.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|168214218|ref|ZP_02639843.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|168217028|ref|ZP_02642653.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
gi|182625836|ref|ZP_02953602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|170711319|gb|EDT23501.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens B str. ATCC 3626]
gi|170714316|gb|EDT26498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens CPE str. F4969]
gi|177908870|gb|EDT71362.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens D str. JGS1721]
gi|182380885|gb|EDT78364.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens NCTC 8239]
Length = 442
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V+ L + + G Y + + D +++G +
Sbjct: 2 NARKIIVEILDNVLLNG-----------AYSNIEINKQFASNDIDPKDKGLITEVVYGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ ID+++SS + + D + +ILR+ + ++ VP I++E V + +
Sbjct: 51 KYKKMIDIILSSFVADIGKI---DESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ KF+N VL R E
Sbjct: 107 TEPNLAKFVNGVLRNYLRNENKN 129
>gi|167772291|ref|ZP_02444344.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
17241]
gi|167665394|gb|EDS09524.1| hypothetical protein ANACOL_03668 [Anaerotruncus colihominis DSM
17241]
Length = 450
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A QAL +++ G Y L ++ + + + +
Sbjct: 26 KKDARYTAAQALLRMESAG-----------AYSNLTIDSLIEKNGLDAREGAFAAALFYT 74
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V++R+ ID ++++ + L + LR GV +L+ V +SE V +
Sbjct: 75 VLERRLTIDHVLAAYCARG--LASLSKPVLQTLRLGVCQLVWMDGVDDYAAVSESVNLTR 132
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
F+N VL R ++
Sbjct: 133 ALGCAKASGFVNGVLRAFLRADKA 156
>gi|297571430|ref|YP_003697204.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
gi|296931777|gb|ADH92585.1| Fmu (Sun) domain protein [Arcanobacterium haemolyticum DSM 20595]
Length = 484
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 16/155 (10%)
Query: 5 DNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+++ RG ARL L ++ G Y A +
Sbjct: 2 SSQRPTNWKPGRGASDRARLVVFDVLMAVEEDG-----------AYANLALPREIRRARL 50
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + +G + I + T + LD + +LR G +L+E
Sbjct: 51 NKQDASYATNLCYGTLRLLGR-WDAILAHCTNGRPIAELDTAVKVLLRMGAHQLLELK-T 108
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P I+E V IA + FINAVL +VS +
Sbjct: 109 PPHAAINETVVIARNELSQGIAGFINAVLRRVSER 143
>gi|168207268|ref|ZP_02633273.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
gi|169342659|ref|ZP_02629420.2| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|169299165|gb|EDS81235.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens C str. JGS1495]
gi|170661376|gb|EDT14059.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens E str. JGS1987]
Length = 442
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V+ L + + G Y + + D +++G +
Sbjct: 2 NARKIIVEILDNVLLNG-----------AYSNIEINKQFASNDIDPKDKGLITEVVYGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ ID+++SS + + D + +ILR+ + ++ VP I++E V + +
Sbjct: 51 KYKKMIDIILSSFVADIGKI---DESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ KF+N VL R E
Sbjct: 107 TEPNLAKFVNGVLRNYLRNENKN 129
>gi|110800441|ref|YP_696427.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
gi|110675088|gb|ABG84075.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens ATCC 13124]
Length = 442
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V+ L + + G Y + + D +++G +
Sbjct: 2 NARKIIVEILDNVLLNG-----------AYSNIEINKQFASNDIDPKDKGLITEVVYGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ ID+++SS + + D + +ILR+ + ++ VP I++E V + +
Sbjct: 51 KYKKMIDIILSSFVADIGKI---DESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ KF+N VL R E
Sbjct: 107 TEPNLAKFVNGVLRNYLRNENKN 129
>gi|313894565|ref|ZP_07828129.1| transcription antitermination factor NusB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313440961|gb|EFR59389.1| transcription antitermination factor NusB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 134
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 16/149 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R AR A Q LY + D + + +D +
Sbjct: 1 MVTKRNRREARQYAFQMLYANEFHND--------------QNDVQFPEGHIQKAMDKAYA 46
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIIS 128
II GV+ + ID + + + LD + +ILR V E+ E + + I+
Sbjct: 47 NSIIQGVIATAEKIDADLQPFCKSR-KVANLDKVDRAILRIAVWEMTNEVEPLEPSIAIN 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
E + +A +F K INA+LD ++
Sbjct: 106 EAIQLAKEFGSDASYKLINAILDAYNKSR 134
>gi|213966115|ref|ZP_03394302.1| transcription antitermination protein NusB [Corynebacterium
amycolatum SK46]
gi|213951213|gb|EEB62608.1| transcription antitermination protein NusB [Corynebacterium
amycolatum SK46]
Length = 234
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V L++ + G +++ E D ++ + E+ I+ GV I
Sbjct: 39 VDLLFEAEQRGVDVVKLLEERLEMVRNPDLDV-------NPIAEYTEQIVRGVAAEIIGI 91
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ISS LTE+W RL + +ILR EL VP V + E V +A ++
Sbjct: 92 DSTISSYLTEEWPLRRLPAVDRAILRLSTWELFYNSDVPPRVAVVEGVELASEYSTDVAA 151
Query: 144 KFINAVLDKVSR 155
+INAVLD ++
Sbjct: 152 PYINAVLDAEAK 163
>gi|223932608|ref|ZP_03624608.1| sun protein [Streptococcus suis 89/1591]
gi|223898718|gb|EEF65079.1| sun protein [Streptococcus suis 89/1591]
Length = 436
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A+ L Q+ G Y A + S D
Sbjct: 1 MINKHETARSLALSVLEQVFDQG-----------AYSNIALNKALESSRLSAQDKGLATE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ D + +L + +L+ +P +++E V
Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDREKL---DTWIYYLLMLSLYQLVYLDKLPTHAVVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
IA D KF+NA+L K+S+
Sbjct: 107 NIAKRKPGTD--KFVNAILRKISQ 128
>gi|170017709|ref|YP_001728628.1| transcription termination factor [Leuconostoc citreum KM20]
gi|169804566|gb|ACA83184.1| Transcription termination factor [Leuconostoc citreum KM20]
Length = 140
Score = 80.2 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +R AA Q L+ ++ + + L + ++ +++G
Sbjct: 6 RHESRQAAFQILFALE-------------KDPQNNNIDRLYDIVLEGKDFDDYLPRLVNG 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ K +D IS L W+ +R++ ILR + EL + VP +V I E + +A
Sbjct: 53 ILGNKIDLDAQISEHLAAGWAIARINKADLVILRLAIYELSQQL-VPYKVAIDEALILAK 111
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
F D+ KF+N VL + K E
Sbjct: 112 TFADEDDRKFVNGVLKNFAPKVEA 135
>gi|154149182|ref|YP_001405652.1| transcription antitermination protein NusB [Campylobacter hominis
ATCC BAA-381]
gi|166215676|sp|A7HZG1|NUSB_CAMHC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|153805191|gb|ABS52198.1| transcription antitermination factor NusB [Campylobacter hominis
ATCC BAA-381]
Length = 131
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY ++ + E R D ++ +
Sbjct: 1 MATRHQVRNAVVSLLYAKEMGSEMNDFVSEYLEEKRIRNDQ------------RKFADKL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV ID + L E + S++ + +ILR G E++ ++ +II+E +
Sbjct: 49 FNGVCKNVNQIDNELDKYLNE-YKISQIGTVERAILRLGAYEIMY-EAIDKAIIINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A + PKFIN VLD++ +
Sbjct: 107 LAKELAGESSPKFINGVLDRIGK 129
>gi|228966815|ref|ZP_04127859.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792914|gb|EEM40472.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 429
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|283783379|ref|YP_003374133.1| transcription antitermination factor NusB [Gardnerella vaginalis
409-05]
gi|298252678|ref|ZP_06976472.1| transcription termination factor [Gardnerella vaginalis 5-1]
gi|283441142|gb|ADB13608.1| transcription antitermination factor NusB [Gardnerella vaginalis
409-05]
gi|297533042|gb|EFH71926.1| transcription termination factor [Gardnerella vaginalis 5-1]
Length = 160
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 15/155 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D + E E E+ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKNQ-----------HILSLLEERVKEPGAQTPLPEYAVEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V +R+ ID ++ + W R+ +I +ILR V E++ +P +V I E + +A
Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEE---IKRSGCVSA 167
+ + FI+ +L + ++ K +G S
Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDACLAKFNGESSP 145
>gi|110803437|ref|YP_699027.1| sun protein [Clostridium perfringens SM101]
gi|110683938|gb|ABG87308.1| ribosomal RNA small subunit methyltransferase B [Clostridium
perfringens SM101]
Length = 442
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V+ L + + G Y + + D +++G +
Sbjct: 2 NARKIIVEILDNVLLNG-----------AYSNIEINKQFASNDIDPKDKGLITEVVYGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ ID+++S+ + + D + +ILR+ + ++ VP I++E V + +
Sbjct: 51 KYKKMIDIILSNFVADIGKI---DESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ KF+N VL R E
Sbjct: 107 TEPNLAKFVNGVLRNYLRNENKN 129
>gi|16329552|ref|NP_440280.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
gi|2500952|sp|P72943|RSMB_SYNY3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|1652035|dbj|BAA16960.1| Fmu and Fmv protein [Synechocystis sp. PCC 6803]
Length = 446
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L I+ ++Y A + D + +++GV+
Sbjct: 4 ARQLAFLIL-----------RDINRRDSYTDVAIDRALQKHPLSPPDRRFCTELVYGVVR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R++ +D LI + L I++ G+ +L VP ++ V +A
Sbjct: 53 RQRTLDCLIEQLGDR--PIGKQPPDLRRIVQLGLYQLRYLDQVPASAAVNTGVDLAKANG 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
K +N +L + R EE ++
Sbjct: 111 LKGLSKVVNGMLRRYQRAEEQGKN 134
>gi|315640285|ref|ZP_07895402.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
gi|315483947|gb|EFU74426.1| RNA methyltransferase Sun [Enterococcus italicus DSM 15952]
Length = 449
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 50/136 (36%), Gaps = 14/136 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L ++D G Y A E + D +++G +
Sbjct: 10 RYIAFTLLERVDKGG-----------AYSNLAIKEAIATTQLNEKDARLLTELVYGTIGN 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L ++D + +LR V +L VP I +E V IA
Sbjct: 59 QLRLDYYLAPFLK---KAKKVDRWVKVLLRMSVYQLHFLDKVPSHAIFNEAVEIAKYRGN 115
Query: 140 GDEPKFINAVLDKVSR 155
+F+N VL ++ R
Sbjct: 116 VGVGQFVNGVLRQLQR 131
>gi|309810676|ref|ZP_07704484.1| transcription antitermination factor NusB [Dermacoccus sp.
Ellin185]
gi|308435307|gb|EFP59131.1| transcription antitermination factor NusB [Dermacoccus sp.
Ellin185]
Length = 138
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ + + +++ E + V E+ V+
Sbjct: 1 MGARTKARKRALDLLFEAEQREINAKDLLD-----------ERVLAPVTPAPLPEYTAVL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+D + I+ + W+ R+ + ++LR E++ VP V +SE
Sbjct: 50 VRGVVDHWRTINEAL-ETYARGWTLDRMPAVDRALLRVAAYEVLYVDDVPDGVAVSEAKN 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + + P+FI +L K+S
Sbjct: 109 LATELSTDNSPQFIGGLLTKLS 130
>gi|85858797|ref|YP_460999.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
gi|85721888|gb|ABC76831.1| 16S rRNA m(5)C 967 methyltransferase [Syntrophus aciditrophicus SB]
Length = 471
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L +ID G ++ + D +++G +
Sbjct: 25 RSLAVEILDRIDTTGAFAEPLLDAFLRDHLLD----------SAPDRHLLTSLVYGTLRM 74
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I + FS + + +ILR + + + +P ++ E V +A +
Sbjct: 75 RGRLDWIIQQLY--QGRFSSMQGGIRNILRTALYQFLFMERIPAFALVDEAVELAKLRYP 132
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
G E K +NA+L RK
Sbjct: 133 GRE-KLVNALLRNAVRKVSANELSYPD 158
>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
gi|149834000|gb|EDM89080.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
Length = 450
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L QID G + I + + + + G ++
Sbjct: 8 REMIMEILLQIDEEGEHSHIAIRNALSKY----------QFLPKQERAFITRVCEGTLEY 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I S ++ + ILR+ V +L VP + +E V +A +
Sbjct: 58 RILIDYIIDSFSKI--PVDKMKPPIREILRSAVYQLKFMDRVPDSAVCNEAVKLAQKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL V+R+ +
Sbjct: 116 YNLKPFVNGVLRTVARQMDELE 137
>gi|304312173|ref|YP_003811771.1| N utilization substance protein B, transcription termination factor
[gamma proteobacterium HdN1]
gi|301797906|emb|CBL46128.1| N utilization substance protein B, transcription termination factor
[gamma proteobacterium HdN1]
Length = 136
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + ++ D+ +F ++HGV +D IS L + + LD + +ILR
Sbjct: 8 SIEAQFRTDNDMRKTDVAYFHELLHGVPSCVADLDSAISPFLDRE--ITELDQVERAILR 65
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL++ +P V I+E + +A F + K++N VLDKV+++
Sbjct: 66 LATYELLKRQDIPYRVAINEGIELAKTFGATESHKYVNGVLDKVAQRLRYHE 117
>gi|290968496|ref|ZP_06560035.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
gi|290781492|gb|EFD94081.1| ribosomal RNA small subunit methyltransferase B [Megasphaera
genomosp. type_1 str. 28L]
Length = 442
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 15/141 (10%)
Query: 20 RLAAVQ-ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
R AV+ L G S + + Y D ++ +++G +
Sbjct: 4 RELAVRSLLLIWQDGGYSNIVVSRMIKKYA------------LSDRDRRFYTELVYGTLR 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D I S ++D + +ILR G+ +L VP E V +A
Sbjct: 52 YMAMLDRAIGMLSKR--SLQQMDAVCAAILRLGLYQLQYLDKVPPSAACYEAVALARKMG 109
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ KF+NAVL R+ E+
Sbjct: 110 HEGMAKFVNAVLRNALRRPEV 130
>gi|239826566|ref|YP_002949190.1| sun protein [Geobacillus sp. WCH70]
gi|239806859|gb|ACS23924.1| sun protein [Geobacillus sp. WCH70]
Length = 447
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L ++ E E Y ++ D+ I++G + R
Sbjct: 7 REVALETLLAVE-----------EKEAYSNLLLNKMIETHRLSERDVRLLTEIVYGTIQR 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + R + +LR + +++ +P I E V IA +
Sbjct: 56 RDTLDYYLTPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112
Query: 140 GDEPKFINAVLDKVSRK 156
+N V+ + R+
Sbjct: 113 QGVASLVNGVMRAIQRQ 129
>gi|167627528|ref|YP_001678028.1| transcription termination factor [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668097|ref|ZP_04755675.1| transcription termination factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876632|ref|ZP_05249342.1| transcription termination factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167597529|gb|ABZ87527.1| transcription termination factor [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254842653|gb|EET21067.1| transcription termination factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 141
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL VQALYQ + + +E+ ++Y + + D + F +
Sbjct: 5 ARARNNARLYTVQALYQKKVADHTFSELKTQYYA----------DNAERHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ V + + I+ I ++ + ++L+ + ELIEC P ++II EYV
Sbjct: 55 MDAVRENQDTINNYIQDNSKNG--IESINYVDYAVLQVAIAELIECLENPYQIIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KF+NAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141
>gi|297243390|ref|ZP_06927323.1| transcription termination factor [Gardnerella vaginalis AMD]
gi|296888637|gb|EFH27376.1| transcription termination factor [Gardnerella vaginalis AMD]
Length = 160
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 15/155 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D + E E E+ I+ G
Sbjct: 3 RSTARKRALNTLYEADEKNQ-----------HILSLLEERVKEPGAQTPLPEYAIEIVRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V +R+ ID ++ + W R+ +I +ILR V E++ +P +V I E + +A
Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEMLLNDEIPDKVAIDEAIALAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEE---IKRSGCVSA 167
+ + FI+ +L + ++ K +G S
Sbjct: 111 MYSDDEAIAFIHGLLSAIMADKDACLAKFNGESSP 145
>gi|228902369|ref|ZP_04066525.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
gi|228857267|gb|EEN01771.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis IBL 4222]
Length = 429
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 5/111 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y L +S D+ I++G + R+ +D + L +++ +
Sbjct: 6 AYSNLLLNNLIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVR 60
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 61 VLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 111
>gi|222528993|ref|YP_002572875.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
gi|222455840|gb|ACM60102.1| NusB antitermination factor [Caldicellulosiruptor bescii DSM 6725]
Length = 134
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY + +II Y+ +R EL+ + + +D ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRFENNT-QDIIEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQKI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D +I ++ W SRL M+ ++R V EL+ VPV V I E V +A F P
Sbjct: 55 DNIIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEEVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|294790502|ref|ZP_06755660.1| transcription antitermination factor NusB [Scardovia inopinata
F0304]
gi|294458399|gb|EFG26752.1| transcription antitermination factor NusB [Scardovia inopinata
F0304]
Length = 176
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D G ++ E + + + II G
Sbjct: 3 RSTARKRALNTLYEADEKGQEILPLLDERLAF-----------PGAQTPLPAYAQDIIRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V ++ ID I+ + W R+ ++ +I R E++ V +V I E + +A
Sbjct: 52 VASHRRTIDRAINEH-STGWDVKRMHVLDRNIARIAAWEIVYNDEVLAKVAIDEALGLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ G+ P F++ +L + R E R+
Sbjct: 111 IYSDGEAPNFLHGLLSAIERDAESIRTEE 139
>gi|320534351|ref|ZP_08034838.1| transcription antitermination factor NusB [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133433|gb|EFW25894.1| transcription antitermination factor NusB [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 163
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A++ L++ D G ++E E ++ V S + R
Sbjct: 19 PVTARTKARRRAIEILFEADQRGMLSSEGTEELRSFAQL----RAVSSANHTEAPLYTRE 74
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV D ID I + W+ R+ + +I R E++ V V + E +
Sbjct: 75 ILNGVCDHLADIDETI-QTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVGVDEAM 133
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ + P+++ +L ++ + R
Sbjct: 134 TLSRMLSTDESPRYLGGLLGRIGDLADTLR 163
>gi|225181330|ref|ZP_03734774.1| sun protein [Dethiobacter alkaliphilus AHT 1]
gi|225167911|gb|EEG76718.1| sun protein [Dethiobacter alkaliphilus AHT 1]
Length = 451
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 12 LSHRRG-IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
++ +R AR A++ AL +++ Y A E+ D
Sbjct: 1 MTRKRKIDAREASLLALQRVEADD-----------AYVNLALDEVLSSHSLDPRDKRLAA 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I +GV+ K +D LI +LD + ILR G +L VP +
Sbjct: 50 EITYGVITYKLTLDWLIEK--VSGRPIKKLDKPIHQILRIGFYQLFYLDRVPPAAAVHAT 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + F+N V+ RK++
Sbjct: 108 VELVKKGKKRGLAPFVNGVMRGALRKKD 135
>gi|332184492|gb|AEE26746.1| Transcription termination protein NusB [Francisella cf. novicida
3523]
Length = 141
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R ARL VQALYQ + + E+ +Y + + D + F +
Sbjct: 5 ARARNNARLYTVQALYQKRVADNTFAELKVQYYA----------DNADRHYTDWDLFYRL 54
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V + ID I + ++ + ++L+A + ELIEC P +VII EYV
Sbjct: 55 IDAVKSNQDIIDKYIQENSNNG--VASINYVDYAVLQAAIAELIECLENPYQVIIKEYVE 112
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I + + KF+NAVL +++ +
Sbjct: 113 ICYSMGTEEGYKFVNAVLQNLAKSIRGEE 141
>gi|57242527|ref|ZP_00370465.1| transcription antitermination factor NusB [Campylobacter
upsaliensis RM3195]
gi|57016812|gb|EAL53595.1| transcription antitermination factor NusB [Campylobacter
upsaliensis RM3195]
Length = 132
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + + LY +++ G + I TE E + + +
Sbjct: 1 MASRHQARQSVISLLYALELNGKNDNFI------------TEFLQEKKIRNEAKNFTLSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++ Q +D I + ++ I +ILR G EL+ ++ ++I+E V
Sbjct: 49 YNGVLEHLQSLDECI-DVFLNENKIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+ + + PK IN VLD + +
Sbjct: 107 LTKEMANENAPKLINGVLDGLQK 129
>gi|154483655|ref|ZP_02026103.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
27560]
gi|149735565|gb|EDM51451.1| hypothetical protein EUBVEN_01359 [Eubacterium ventriosum ATCC
27560]
Length = 131
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 10/139 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + LY D S D + D ++ +
Sbjct: 2 NRVKLRENTFKLLYCNDFHNRS---------EMPKQYDLFWEETPEVSEEDRKFISNRVD 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ ID I+ KW+ R+ + +ILR E+ +P +V + + + +A
Sbjct: 53 AIAEKIDEIDEAINKA-AVKWTTDRMSKVDLTILRLAYYEMKIDEDIPEKVAVDQAIELA 111
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ D P F+N VL K+
Sbjct: 112 KKYGTDDSPSFVNGVLAKL 130
>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
obscuriglobus UQM 2246]
Length = 465
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 13/136 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L + + + + D + ++ GV+
Sbjct: 5 ARQVAADVL-----------NRSRSRDGFAAELVDDAVNAANLSPQDRRFVTQLVFGVIR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R +D L+ + + + +LR G +L VP + E V +A
Sbjct: 54 RGGTLDALLKPFI--HLPTHAVQDRVWDLLRLGAFQLTFLTHVPKHAAVHETVELAEHVG 111
Query: 139 YGDEPKFINAVLDKVS 154
F+N VL +++
Sbjct: 112 APKAKGFVNGVLRRIA 127
>gi|322388304|ref|ZP_08061908.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
gi|321140976|gb|EFX36477.1| RNA methyltransferase Sun [Streptococcus infantis ATCC 700779]
Length = 437
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L E + + Y A + S D +++G +
Sbjct: 7 ARNLALKVL-----------EDVFVNQAYSNIALNKHLKGSQLSATDKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V IA
Sbjct: 56 RKLTLEWYLSHFIEDRDKL---DSWLYILLLMSVYQLEYLDKLPDHAVVNESVEIAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|255101745|ref|ZP_05330722.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-63q42]
Length = 441
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L I+ Y A + +D +I+GV++
Sbjct: 3 AREVGFKVLCDIEKND-----------NYSNIAINKHFKNLEISDMDRGLATELIYGVIE 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K ++D +I+ ++ + LR G +++ S+ ++E V ++ +
Sbjct: 52 NKYYLDYIINKLSKI--KVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
FINA+L R +E
Sbjct: 109 DKKSSGFINAILRNEIRAKET 129
>gi|18310723|ref|NP_562657.1| RNA-binding Sun protein [Clostridium perfringens str. 13]
gi|18145404|dbj|BAB81447.1| probable RNA-binding Sun protein [Clostridium perfringens str. 13]
Length = 442
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V+ L + + G Y + + D +++G +
Sbjct: 2 NARKIIVEILDNVLLNG-----------AYSNIEINKQFASNDIDPKDKGLITEVVYGTI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ ID+++SS + + D + +ILR+ + ++ VP I++E V + +
Sbjct: 51 KYKKMIDIILSSFVADIGKI---DESVVNILRSAIYQMKFLDRVPPYAIVNEAVNLTKE- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ KFIN VL R E
Sbjct: 107 TEPNLAKFINGVLRNYLRNENKN 129
>gi|294500982|ref|YP_003564682.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
gi|294350919|gb|ADE71248.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium QM B1551]
Length = 446
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 14/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R A+ L I+ + + D I++
Sbjct: 2 SKYNVRDIALDILLAIEKNQ-----------AFSNLLLNNSIQKRGIQGKDAGLLTEIVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + R+ +D ++ L + +LR + +++ VP I+ E V IA
Sbjct: 51 GTIQRRDTLDYGLAPFLKNPKKLQPW---VRVLLRLSLYQMVYLDRVPDRAILHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ +N VL + R
Sbjct: 108 KKRGHKGIASMVNGVLRNIQR 128
>gi|21673438|ref|NP_661503.1| Sun protein [Chlorobium tepidum TLS]
gi|21646540|gb|AAM71845.1| sun protein [Chlorobium tepidum TLS]
Length = 428
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L ++D + E+++ + D + ++ G +
Sbjct: 3 ARELALRVLLELD-GMRKSEELLNRMHEHA-----------GLGKNDRALAKELVAGTLK 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ D +I+ + +++ +L ILR GV +L+ VP ++E V +A F
Sbjct: 51 YRLQCDFIIARFY--RHDYAKAATVLKHILRLGVYQLLRLDRVPKSAAVNESVKLARKFK 108
Query: 139 YGDEPKFINAVLDKVSR 155
+ +N +L +S+
Sbjct: 109 GDHLARLVNGLLRNISK 125
>gi|302872150|ref|YP_003840786.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
gi|302575009|gb|ADL42800.1| NusB antitermination factor [Caldicellulosiruptor obsidiansis OB47]
Length = 136
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY +II Y+ +R E + VD ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRFENM-QQDIIEFYKRFRELNQNE-----DFKDVDEKYLEKLLKGVIQNQQII 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI+ ++ W +RL M+ ++R V EL+ VPV V I E V +A F P
Sbjct: 55 DNLIAKY-SKDWPLNRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVSRKEEIKRS 162
F+N +L +++ + E+KRS
Sbjct: 114 SFVNGILGRIA-ENEVKRS 131
>gi|237785571|ref|YP_002906276.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758483|gb|ACR17733.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
kroppenstedtii DSM 44385]
Length = 524
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 15/159 (9%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ N+K + H R + R A QAL+++D I+ E
Sbjct: 64 NKPNRKPAR-EHHRDLPRYVAWQALFRVDTENAFGNIILPSL-----------MKEYGLS 111
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + + +G + + +D +I C + +D + ++LR G +L+
Sbjct: 112 GRDAAFTTELGYGSLRAQGLVDAVIGECSSR--PLEAIDPAVIAVLRLGTYQLLRMRVG- 168
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ V + + F+NAVL V+++ E +
Sbjct: 169 NHAAVNTSVDLCQEVDKPKAKGFVNAVLHSVAQRTESEW 207
>gi|254976172|ref|ZP_05272644.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-66c26]
gi|255315305|ref|ZP_05356888.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-76w55]
gi|255517973|ref|ZP_05385649.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-97b34]
gi|255651089|ref|ZP_05397991.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-37x79]
gi|260684154|ref|YP_003215439.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260687813|ref|YP_003218947.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
gi|306520940|ref|ZP_07407287.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-32g58]
gi|260210317|emb|CBA64638.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile CD196]
gi|260213830|emb|CBE05814.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile R20291]
Length = 441
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L I+ Y A + +D +I+GV++
Sbjct: 3 AREVGFKVLCDIEKND-----------NYSNIAINKHFKNLEISDMDRGLATELIYGVIE 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K ++D +I+ ++ + LR G +++ S+ ++E V ++ +
Sbjct: 52 NKYYLDYIINKLSKI--KVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
FINA+L R +E
Sbjct: 109 DKKSSGFINAILRNEIRAKET 129
>gi|295706330|ref|YP_003599405.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
gi|294803989|gb|ADF41055.1| ribosomal RNA small subunit methyltransferase B [Bacillus
megaterium DSM 319]
Length = 446
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 14/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R A+ L I+ + + D I++
Sbjct: 2 SKYNVRDIALDILLAIEKNQ-----------AFSNLLLNNSIQKRGIQGKDAGLLTEIVY 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + R+ +D ++ L + +LR + +++ VP I+ E V IA
Sbjct: 51 GTIQRRDTLDYGLAPFLKNPKKLQPW---VRVLLRLSLYQMVYLDRVPDRAILHEAVEIA 107
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+ +N VL + R
Sbjct: 108 KKRGHKGIASMVNGVLRNIQR 128
>gi|322386005|ref|ZP_08059645.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
gi|321269988|gb|EFX52908.1| RNA methyltransferase Sun [Streptococcus cristatus ATCC 51100]
Length = 440
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ L ++ AR A++ L ++ G Y A + +S D
Sbjct: 1 MNLESKQKRARELALEILEEVFEEG-----------AYSNIALNKALKQSALSSADKSLV 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++G + RK ++ ++ + ++ D L +L + +++ +P +++E
Sbjct: 50 TELVYGTVARKISLEWQLAHFVEDRDKL---DAWLYILLELSLYQMLYLDKIPQHAVVNE 106
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V IA K++NA+L K+ +R G IT
Sbjct: 107 AVEIAKGRK-RGSEKYVNAILRKI------ERDGAADPIT 139
>gi|225377868|ref|ZP_03755089.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
gi|225210306|gb|EEG92660.1| hypothetical protein ROSEINA2194_03527 [Roseburia inulinivorans DSM
16841]
Length = 440
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G + +I + + + G +
Sbjct: 8 RELILGILMEVTKEGSYSHLVIRSVLDKY----------QYLEKKERAFITRVSEGTIQY 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I+ +++ ++ +ILR V +L SVP + +E V +A +
Sbjct: 58 MIELDYIINRFSKV--KVNKMKPVIRNILRMSVYQLKYMDSVPDSAVCNEAVKLAKRKGF 115
Query: 140 GDEPKFINAVLDKVSRKE 157
G F+N VL +SR
Sbjct: 116 GSLSGFVNGVLRNISRNL 133
>gi|126700200|ref|YP_001089097.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile 630]
gi|115251637|emb|CAJ69470.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Clostridium
difficile]
Length = 441
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L I+ Y A + +D +I+GV++
Sbjct: 3 AREVGFKVLCDIEKND-----------NYSNIAINKHFKNLEISDMDRGLATELIYGVIE 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K ++D +I+ ++ + LR G +++ S+ ++E V ++ +
Sbjct: 52 NKYYLDYIINKLSKI--KVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
FINA+L R +E
Sbjct: 109 DKKSSGFINAILRNEIRAKET 129
>gi|326329761|ref|ZP_08196082.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
bacterium Broad-1]
gi|325952526|gb|EGD44545.1| ribosomal RNA small subunit methyltransferase B [Nocardioidaceae
bacterium Broad-1]
Length = 489
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARLAA + L + + E Y + D + + G +
Sbjct: 35 ARLAAFEVL-----------KAVRVDEAYANLVLPHVLGRLGLEGRDAAFATELASGTLR 83
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
++ D ++++C+ ++++ + +LR G +++ VP IS V +A
Sbjct: 84 QQGTYDAVLAACIDR--PLAKVEAKVLDVLRLGAHQVLSMR-VPDHAAISTSVDLARSKV 140
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+NAVL KV+R + V+ +
Sbjct: 141 GQGPAGFVNAVLRKVTRITLEEWVAEVAPARE 172
>gi|308234826|ref|ZP_07665563.1| transcription antitermination factor NusB [Gardnerella vaginalis
ATCC 14018]
gi|311114640|ref|YP_003985861.1| transcription antitermination factor NusB [Gardnerella vaginalis
ATCC 14019]
gi|310946134|gb|ADP38838.1| transcription antitermination factor NusB [Gardnerella vaginalis
ATCC 14019]
Length = 176
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 12/144 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ LY+ D + E E ++ II G
Sbjct: 3 RSTARKRALNTLYEADEKNQNI-----------LSLLEERLKEPGAQTPLPDYAVDIIRG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V +R+ ID ++ + W R+ +I +ILR V E++ VP +V I E + +A
Sbjct: 52 VGERRNRIDKTLNRY-STGWKVGRMAVIDRNILRIAVWEILLNDEVPDKVAIDEAISLAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEI 159
+ D FI+ +L + +E
Sbjct: 111 MYSDDDAIAFIHGLLSAIMADKEA 134
>gi|255656560|ref|ZP_05401969.1| ribosomal RNA small subunit methyltransferase [Clostridium
difficile QCD-23m63]
gi|296449988|ref|ZP_06891752.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296878369|ref|ZP_06902377.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
gi|296261258|gb|EFH08089.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP08]
gi|296430667|gb|EFH16506.1| ribosomal RNA small subunit methyltransferase B [Clostridium
difficile NAP07]
Length = 441
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L I+ Y A + +D +I+GV++
Sbjct: 3 AREVGFKVLCDIEKNN-----------NYSNIAINKHFKNLEISDIDRGLATELIYGVIE 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K ++D +I+ ++ + LR G +++ S+ ++E V ++ +
Sbjct: 52 NKYYLDYIINKLSKI--KVKKMSTYVKIFLRMGTYQILFLDSISDYAAVNETVKLSKKY- 108
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
FINA+L R +E
Sbjct: 109 DKKSSGFINAILRNEIRAKET 129
>gi|330832248|ref|YP_004401073.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
gi|329306471|gb|AEB80887.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis ST3]
Length = 436
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A+ L Q+ G Y A + S D
Sbjct: 1 MINKHETARSLALSVLEQVFDQG-----------AYSNIALNKALESSRLSAQDKGLATE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ D + +L + +L+ +P +++E V
Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDREKL---DTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D KF+NA+L K+S+
Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQD 129
>gi|166030414|ref|ZP_02233243.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
27755]
gi|166029772|gb|EDR48529.1| hypothetical protein DORFOR_00075 [Dorea formicigenerans ATCC
27755]
Length = 132
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + ++ + S E+ + + Y D E E D+ + R
Sbjct: 2 KRTEMREHIFRMVFSYEFN--SDQEMPQQMQLYFEQLDQEPKEE------DMAYIRDKAL 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+ + + ID +++ +T W SR++ + SILR V E+ VPV V I+E V +A
Sbjct: 54 NVILKSEEIDEMLNEHVTG-WKTSRMNKVDLSILRLAVYEMKYDEDVPVGVAINEAVELA 112
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ + P FIN VL ++S
Sbjct: 113 KKYSGDEGPAFINGVLARLS 132
>gi|170077132|ref|YP_001733770.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
gi|169884801|gb|ACA98514.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Synechococcus sp.
PCC 7002]
Length = 447
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 13/142 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A AL QI T + +S D +++G
Sbjct: 2 SSARQLAFLALRQIMYHNAYTDVALDRVL-----------HKSNLTGSDRALVAELVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D +I + + L +L+ G+ +L +P ++ V IA
Sbjct: 51 VRRQKTLDAIIDQLGKK--PIDQQPPDLRVLLQLGLYQLRYLDQIPPSAAVNTSVEIAKT 108
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
G +N L R+ +
Sbjct: 109 NKLGQLAGVVNGCLRGYLRQRD 130
>gi|260887300|ref|ZP_05898563.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|330838946|ref|YP_004413526.1| sun protein [Selenomonas sputigena ATCC 35185]
gi|260862936|gb|EEX77436.1| ribosomal RNA small subunit methyltransferase B [Selenomonas
sputigena ATCC 35185]
gi|329746710|gb|AEC00067.1| sun protein [Selenomonas sputigena ATCC 35185]
Length = 443
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 15/152 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A++AL ++ Y A + VD + + +G
Sbjct: 3 KARETALKAL--HEVNEKGA---------YANVALARSLRAAKLSEVDRRFATELAYGAA 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D ++ L S++ ++ ILR G+ +L VP + V +
Sbjct: 52 KAGGTLDWILRRYLNR--PLSKIPPMVRDILRLGIYQLFFLARVPASAACNTAVEMTKRC 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+ KF+NAVL +R+ E ++ +
Sbjct: 110 SHAGTVKFVNAVLRTAAREPE--KAAFPTGKA 139
>gi|78221293|ref|YP_383040.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
metallireducens GS-15]
gi|78192548|gb|ABB30315.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Geobacter
metallireducens GS-15]
Length = 446
Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A+ L +++ +++ + D +++G
Sbjct: 3 RSNPRRTALDILLRVERDRAFAEQLLDRELSL-----------GTLTGPDRGLLTELVYG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ R+ +D L+ + + +L+ + ILR G+ +L +P ++E V +A
Sbjct: 52 VLRRQGTLDFLVDAFAASRSG--KLERAILVILRLGLYQLFFLDRIPTSAAVNESVNLAK 109
Query: 136 DFFYGDEPKFINAVLDKVSRKEE----IKRSGCVSA 167
F+NAVL + R+ + R +A
Sbjct: 110 A-VAPRAAGFVNAVLRRADRERDSLPWPDRGADPAA 144
>gi|319757554|gb|ADV69496.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis JS14]
Length = 436
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A+ L Q+ G Y A + S D
Sbjct: 1 MINKHETARSLALSVLEQVFDQG-----------AYSNIALNKALESSRLSAQDKGLATE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ D + +L + +L+ +P +++E V
Sbjct: 50 LVYGTVSRKITLEWYLAHFIEDREKL---DTWVYYLLMLSLYQLVYLDKLPTHAVVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D KF+NA+L K+S+
Sbjct: 107 NIAKRKPGTD--KFVNAILRKLSQD 129
>gi|289435165|ref|YP_003465037.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171409|emb|CBH27953.1| sun protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 446
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VREIALELIIKIENNQS-----------YSHLLINDALKKQKLNLLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|331266904|ref|YP_004326534.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
Uo5]
gi|326683576|emb|CBZ01194.1| rRNA-specific 5-methylcytidine transferase [Streptococcus oralis
Uo5]
Length = 437
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAPDKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V IA
Sbjct: 56 RKLTLEWYLSHFIEDRDKL---DNWLYILLLLSAYQLRYLDKIPNHAVVNEAVEIAKARK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|307326811|ref|ZP_07606003.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
gi|306887574|gb|EFN18568.1| Fmu (Sun) domain protein [Streptomyces violaceusniger Tu 4113]
Length = 489
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 5/135 (3%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ A +AL +D ++ R ++ + D +++G +
Sbjct: 29 RILAFEALRAVDERDAYANLVLPPLL--RKARESAEAGGPRFDARDAALATELVYGTLRH 86
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ D +I+ C+ +D + +L G +L+ +P +S V +A
Sbjct: 87 QGTYDAIIAECVDR--PLREVDPPVLDVLNLGAHQLLGTR-IPTHAAVSASVELARVVLG 143
Query: 140 GDEPKFINAVLDKVS 154
KF+NAVL +++
Sbjct: 144 DGRAKFVNAVLRRIA 158
>gi|260588062|ref|ZP_05853975.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
gi|260541589|gb|EEX22158.1| ribosomal RNA small subunit methyltransferase B [Blautia hansenii
DSM 20583]
Length = 454
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 12/142 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R + L +I+ G + +I + + +
Sbjct: 3 NKVNLRELVLGILLEINKEGQHSHLVIRSTLEKY----------QYLEKQERAFLTRVCE 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ K +D ++ + ++ ++ ILR+ V +L+ +VP + E V +A
Sbjct: 53 GTLEYKLRLDYILDQYSSV--PVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ + F+N VL KV+R+
Sbjct: 111 RKKGFYNLTGFVNGVLRKVARE 132
>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 456
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 13/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+ A + +Y++ G + A + S D I++G +
Sbjct: 11 KARIMAAEIVYEVMERG-----------AFANLALAKALRNSDLSAADRHLLTEIVNGTV 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+H+D ++ + + L SILR + +L+ VP ++++ V I+
Sbjct: 60 RMIKHLDWVLELF--LHSPIKKQNPYLLSILRTALYQLMFLAKVPDYALVNDAVEISRQK 117
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
NAVL + RK + +
Sbjct: 118 MGAKMAGVSNAVLRNIIRKLDKIK 141
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
Length = 453
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA+ L +D Y E D I +G +
Sbjct: 14 RDAALSILLAVDKNQ-----------AYSNLLLNETIKRHKIEAKDRALLTEITYGTLQY 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + S +D + +LR + ++ +P ++E V IA +
Sbjct: 63 KMTLDYYLEPFIR-----SSIDHWVRWLLRISLYQIHYLTRIPPHAAVNEAVEIAKRRGH 117
Query: 140 GDEPKFINAVLDKVSR 155
+N +L V R
Sbjct: 118 RGIASMVNGILRSVLR 133
>gi|58584450|ref|YP_198023.1| transcription termination factor, NusB [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58418766|gb|AAW70781.1| Transcription termination factor, NusB [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 160
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 3/162 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+++ + K +R AR AVQ Y +G + E R +L
Sbjct: 1 MEEEPVEKKWRIKRSAARFLAVQVAYSNIFMGYDKSTFELENCGLRN-YVGKLADIFECE 59
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D ++ +++ V+ D +I L WS RL+++ SILR V EL C P
Sbjct: 60 EFDYQFLEKLLYKVIRSGGEYDKIIEYYLHPSWSLLRLNLVSLSILRVAVCELANCD-TP 118
Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRSG 163
V+I+EY IA D E FIN +LDK ++ ++
Sbjct: 119 APVVINEYTNIASDLLDKPSEIGFINGLLDKAKSAVKLNKNS 160
>gi|81428305|ref|YP_395305.1| putative rRNA methytransferase (sun protein) [Lactobacillus sakei
subsp. sakei 23K]
gi|78609947|emb|CAI54994.1| Putative rRNA methytransferase (sun protein) [Lactobacillus sakei
subsp. sakei 23K]
Length = 447
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 14/149 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L I++ +Y A ++ ++ D + +++GV+
Sbjct: 7 RYLAVEIL-----------TAIAKQNSYSNLALDQVINKNRLNPQDAGFLTQLVYGVIQH 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ + ++D + +LR V + + VP I E IA +
Sbjct: 56 EYTLDYYLAPFI---QKPKKMDNWVRQVLRTAVYQQVYLDRVPEHAIFYEATEIAKKMGH 112
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
K + A+L ++ R + I
Sbjct: 113 AGVSKLVTAILRQLQRSGLPDLNAIADPI 141
>gi|290968307|ref|ZP_06559849.1| transcription antitermination factor NusB [Megasphaera genomosp.
type_1 str. 28L]
gi|290781666|gb|EFD94252.1| transcription antitermination factor NusB [Megasphaera genomosp.
type_1 str. 28L]
Length = 141
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 7/146 (4%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R A++ LY + + +I + D + ++
Sbjct: 2 SRHRERQEALEILYSREFH--APDDIQY---AEQEIFDHTAAEARALTPERRAYCMYLVQ 56
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCI 133
V RK+ +D +I S + W RL+ +I+R + E+ VP V+++E V +
Sbjct: 57 TVGARKEELDRIIGSL-AKDWDIQRLNYTEKNIMRLALCEMKYPKEPVPTAVVLNEAVLL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A ++ + +F+N VL SR +E
Sbjct: 116 AKEYCSSEAARFVNGVLGTYSRMKEE 141
>gi|322806774|emb|CBZ04343.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum H04402 065]
Length = 442
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|329946651|ref|ZP_08294063.1| transcription antitermination factor NusB [Actinomyces sp. oral
taxon 170 str. F0386]
gi|328526462|gb|EGF53475.1| transcription antitermination factor NusB [Actinomyces sp. oral
taxon 170 str. F0386]
Length = 163
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 5/150 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A++ L++ D G I + E R A + + + R
Sbjct: 19 PVTARTKARRRAIEILFEADQRG---MLISGDAEELRSFAQLRAVSSANHTEA-PAYTRE 74
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ GV D +D I + W+ R+ + +I R E++ V V + E +
Sbjct: 75 ILDGVCDHLADVDETI-QTYAQGWTLGRMPAVDRAIARVATWEIVYNDDVDAPVAVDEAM 133
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ + P+++ +L ++ + R
Sbjct: 134 TLSRMLSTDESPRYLGGLLGRIGDLADTLR 163
>gi|148380461|ref|YP_001255002.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 3502]
gi|153931256|ref|YP_001384684.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|153936344|ref|YP_001388205.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|168180610|ref|ZP_02615274.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
gi|170756128|ref|YP_001782050.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|148289945|emb|CAL84058.1| putative ribosomal RNA methyltransferase [Clostridium botulinum A
str. ATCC 3502]
gi|152927300|gb|ABS32800.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. ATCC 19397]
gi|152932258|gb|ABS37757.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A str. Hall]
gi|169121340|gb|ACA45176.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B1 str. Okra]
gi|182668623|gb|EDT80602.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum NCTC 2916]
Length = 442
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|237795946|ref|YP_002863498.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
gi|229261794|gb|ACQ52827.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Ba4 str. 657]
Length = 442
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|86609413|ref|YP_478175.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557955|gb|ABD02912.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 457
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 13/139 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ AL +I+ ++ S + D +++G+
Sbjct: 2 NARQLALLALQKIERQNAYADLVLGHLLAN-----------SSLIPADRHLVSELVYGIT 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R++ +D LI + + L IL G+ +L +P I V +A
Sbjct: 51 RRRRTLDALID--CLAQRPAHKQPPDLRLILHLGLYQLAFLDQIPASAAIHTSVELARQM 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
G +N +L R+
Sbjct: 109 GLGSLTGVVNGILRAYQRQ 127
>gi|239932443|ref|ZP_04689396.1| putative Sun-family protein [Streptomyces ghanaensis ATCC 14672]
Length = 274
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 60/156 (38%), Gaps = 10/156 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R+ A +AL +D ++ + + D +++
Sbjct: 19 KKDPVRVLAFEALRAVDERDAYANLVLPPLLR-------TAREKGDFDARDAALATELVY 71
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + R+ D +I++C+ +D + +L G +L+ +P +S V +A
Sbjct: 72 GTLRRQGTYDAIIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELA 128
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
KF+NAVL ++++ + V+ +
Sbjct: 129 RVVLGDGRAKFVNAVLRRIAQDDLDGWLERVAPPYE 164
>gi|226949860|ref|YP_002804951.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
gi|226843504|gb|ACO86170.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A2 str. Kyoto]
Length = 442
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|170758272|ref|YP_001787822.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
gi|169405261|gb|ACA53672.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum A3 str. Loch Maree]
Length = 442
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|116622296|ref|YP_824452.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
gi|116225458|gb|ABJ84167.1| NusB/RsmB/TIM44 [Candidatus Solibacter usitatus Ellin6076]
Length = 360
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 17/139 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+AA L ++ G ++ +++ + D I+ GV+
Sbjct: 5 AARIAAFDILQLVESGGYASDLLLA--------------RTADLDSRDAGLASEIVFGVL 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D LI D + + LR + ++ VP + E V +
Sbjct: 51 RYRAQLDFLIIHYAGRSRKL---DPEVRTALRMAIYQIRYLERVPPHAAVKESVELVKRA 107
Query: 138 FYGDEPKFINAVLDKVSRK 156
F+NA+L +V R
Sbjct: 108 RKTSAAGFVNAILRQVDRD 126
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
Length = 444
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + + +D + + ++ GV+
Sbjct: 2 KPREIAYKILQEVL-----------SKEAYANISFNKHLRSQELKEIDRGFTKELVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + + + L G+ +L+ VP I+E V IA
Sbjct: 51 ERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRNYEREKE 126
>gi|302671346|ref|YP_003831306.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
gi|302395819|gb|ADL34724.1| rRNA small subunit methyltransferase B Sun [Butyrivibrio
proteoclasticus B316]
Length = 450
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L + D G ++ + DT D + + + G ++R
Sbjct: 5 REIILNILIEYDRDGNRKPSLLKDTLEKYDYLDTR----------DKSFIKRVTEGCLER 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I S ++ + +++R +++ SVP +E V +A +
Sbjct: 55 NIQIDYIIDSYAKT--PVRQMQPFIRALMRMSTYQIMFMDSVPDSAACNEAVKLAAKHKF 112
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+N VL VSR ++ +
Sbjct: 113 AGLKGFVNGVLRNVSRGKDQIK 134
>gi|222823552|ref|YP_002575126.1| transcription antitermination factor NusB [Campylobacter lari
RM2100]
gi|254772621|sp|B9KFP0|NUSB_CAMLR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|222538774|gb|ACM63875.1| transcription antitermination factor NusB [Campylobacter lari
RM2100]
Length = 132
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + V LY + + I E E + ++ +
Sbjct: 1 MATRHQVRQSIVSLLYAAQLNQENKDFI------------NEFLDEKKIRNDQRKFTLDL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+G+ ++ +D I+ CL E + I +ILR G E++ S +II+E +
Sbjct: 49 YNGINEQLALLDEKINECLKE-HKLDGVASIEKAILRLGAYEILFT-STQKAIIINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKFIN VLDK++++ +
Sbjct: 107 LAKEMAGDNAPKFINGVLDKINKEVQ 132
>gi|312877547|ref|ZP_07737507.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
gi|311795688|gb|EFR12057.1| NusB antitermination factor [Caldicellulosiruptor lactoaceticus 6A]
Length = 134
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRF-EDGQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI ++ W SRL M+ +LR V EL+ VPV V I E V +A F P
Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELLRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|291458605|ref|ZP_06597995.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
oral taxon 078 str. F0262]
gi|291419138|gb|EFE92857.1| ribosomal RNA small subunit methyltransferase B [Oribacterium sp.
oral taxon 078 str. F0262]
Length = 427
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 62/153 (40%), Gaps = 14/153 (9%)
Query: 8 KDLKLSHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
K ++ R R A+ L+ +I + + EL D
Sbjct: 6 KRMRGERIRRSEDPRNTALSILF----------DIFEKGKHSHIALREELSKYKAMPERD 55
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ +++G ++R +D + C + ++ +L ++LR G +++ VP
Sbjct: 56 RAFLTRLVNGTVERSVTLDYFLDRC--SRLKVKKMRPLLRTLLRMGSFQILFSDRVPDSA 113
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++E V ++H F+NAVL ++S ++E
Sbjct: 114 AVNESVKLSHRRGLSGLSSFVNAVLRRISGEKE 146
>gi|241895667|ref|ZP_04782963.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871034|gb|EER74785.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 456
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++N+K R +V+ L ++ + Y + ++
Sbjct: 1 MTKKNNQKIANWEL--TNPRALSVRVL----------EKVQNG--AYSNLQLDSMIKQAD 46
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
++ +++GV+ + ++ + + + +L + ++
Sbjct: 47 LSEKNVHLMTTMVYGVIQHRLTLEYWLIPFIKQPQKLESWVRE---LLYISIFQMQYLDK 103
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P I E + IA + KF+ VL + R+
Sbjct: 104 IPDHAIFDEAINIAKRRGHDGTRKFVTGVLHAIQRQ 139
>gi|153938943|ref|YP_001391803.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
gi|152934839|gb|ABS40337.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum F str. Langeland]
Length = 442
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFEGAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIVNILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|227824651|ref|ZP_03989483.1| SUN protein [Acidaminococcus sp. D21]
gi|226905150|gb|EEH91068.1| SUN protein [Acidaminococcus sp. D21]
Length = 445
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L + I E Y A + + +D + +++G +
Sbjct: 8 RELALLVL-----------DEIYERGAYANLALNKALRGNGLSSLDRKLCTELVYGTVKT 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D + + F ++ L +ILR G +++ +P ++E +A +
Sbjct: 57 TGTLDWYLCRVINR--PFRKMAPRLRTILRMGAYQILYLERIPDSAAVNECANLARYYVN 114
Query: 140 GDEPKFINAVLDKVSR 155
+ K +N VL ++SR
Sbjct: 115 ENSVKLVNGVLRQLSR 130
>gi|322374811|ref|ZP_08049325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
C300]
gi|321280311|gb|EFX57350.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
C300]
Length = 437
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQLSVADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIQDRDKL---DNWLYILLLLSAYQLRYLDKIPNHAVVNEAVELAKARK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|295399764|ref|ZP_06809745.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
gi|294978167|gb|EFG53764.1| sun protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 447
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L ++ E E Y + D+ I++G + R
Sbjct: 7 REVALETLLAVE-----------EKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + R + +LR + +++ +P I E V IA +
Sbjct: 56 RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112
Query: 140 GDEPKFINAVLDKVSRK 156
+N V+ + R+
Sbjct: 113 QGIASLVNGVMRAILRQ 129
>gi|254994892|ref|ZP_05277082.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Mississippi]
gi|255003026|ref|ZP_05277990.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Puerto Rico]
gi|255004149|ref|ZP_05278950.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Virginia]
Length = 173
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M DL + AR AVQ Y + E + + E+
Sbjct: 1 MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEH----LCEMRGVFG 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ S
Sbjct: 56 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELLCF-S 114
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++I+EYV IA E F+NA+L+K ++ R V
Sbjct: 115 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEV 158
>gi|224437825|ref|ZP_03658772.1| transcription antitermination protein NusB [Helicobacter cinaedi
CCUG 18818]
gi|313144273|ref|ZP_07806466.1| transcription antitermination protein NusB [Helicobacter cinaedi
CCUG 18818]
gi|313129304|gb|EFR46921.1| transcription antitermination protein NusB [Helicobacter cinaedi
CCUG 18818]
Length = 165
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A + LY D+ +I + E + ++ ++
Sbjct: 1 MATRTQAREAVIGMLYAYDLGNKDILDIAR-----------SMFEEKKIKNKQQDFAFLL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + Q ID I L E W FSRL + ++LR G E++ + V+I+E +
Sbjct: 50 LQGAITNLQSIDEAIIPYLKE-WDFSRLGGMEKAVLRLGAYEILYTDTDSP-VVINEAIE 107
Query: 133 IAHDFFYGD-EPKFINAVLDKVSRKEE 158
+ + D P+F+N VLD +S+
Sbjct: 108 LGKMYGGEDNTPRFLNGVLDALSKAHR 134
>gi|307704282|ref|ZP_07641201.1| transcription antitermination factor NusB [Streptococcus mitis
SK597]
gi|307622193|gb|EFO01211.1| transcription antitermination factor NusB [Streptococcus mitis
SK597]
Length = 141
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALMSLEF-GTDMETACHFAYTH---------DREDADVQIPAFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV +K +D I+ L W RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGVQAQKDELDKQINQHLKSGWIVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEENE 141
>gi|15837557|ref|NP_298245.1| transcription antitermination protein NusB [Xylella fastidiosa
9a5c]
gi|22095972|sp|Q9PES3|NUSB_XYLFA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|9105883|gb|AAF83765.1|AE003934_7 transcription termination factor [Xylella fastidiosa 9a5c]
Length = 157
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y I G ++I+ + E Y DL +F ++ GV+ +D +
Sbjct: 34 YAWQISGGVAKQVIAHF-----------AHEQAYEVADLAYFEDLVEGVLTHCAELDEKL 82
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L + +D I ++LR G EL+ VP V+I+E + A F ++N
Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140
Query: 148 AVLDKVS---RKEEI 159
VLD+ + RK E+
Sbjct: 141 GVLDRAALALRKVEV 155
>gi|57168521|ref|ZP_00367654.1| transcription antitermination factor NusB [Campylobacter coli
RM2228]
gi|305432938|ref|ZP_07402096.1| transcription antitermination factor NusB [Campylobacter coli JV20]
gi|57020026|gb|EAL56703.1| transcription antitermination factor NusB [Campylobacter coli
RM2228]
gi|304444092|gb|EFM36747.1| transcription antitermination factor NusB [Campylobacter coli JV20]
Length = 132
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + LY +++ + I E E + + +
Sbjct: 1 MATRHQVRQSVISLLYALEMNEKNENFI------------DEFLNEKKIRNEQKNFTLSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
G++ ID ++ L E +L I +ILR G EL+ P ++I+E +
Sbjct: 49 YEGIIKNLDDIDKNLNPYLNENE-IEKLGHIERAILRLGAYELLFTD-TPNAIVINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDTLVKAKQ 132
>gi|307264803|ref|ZP_07546365.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306920061|gb|EFN50273.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + + +D + + ++ GV+
Sbjct: 2 KPREIAYKILQEVL-----------SKEAYANISFNKHLRSQELKEIDRGFTKELVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + + + L G+ +L+ VP I+E V IA
Sbjct: 51 ERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRNYEREKE 126
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR + L ++ Y + D I++G +
Sbjct: 3 NARKICIDIL-EMVFNKN----------AYSNIVLRQSLNNQKINEKDKGLITEIVYGTI 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ID ++++ L + +D + +ILR + ++ +P ++E V IA
Sbjct: 52 KYKYTIDAILNTYLKKGT--KSVDSYILNILRITIYQIKYLDKIPNFAAVNEAVNIAKKH 109
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
E K +N VL R +
Sbjct: 110 KSIRESKLVNGVLRNYLRNLD 130
>gi|71898912|ref|ZP_00681079.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
gi|71731324|gb|EAO33388.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
Length = 157
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y I G ++I+ + E Y DL +F ++ GV+ +D +
Sbjct: 34 YAWQISGGVAKQVIAHF-----------AHEQAYEVADLVYFEDLVEGVLTHCAELDEKL 82
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L + +D I ++LR G EL+ VP V+I+E + A F ++N
Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140
Query: 148 AVLDK---VSRKEEI 159
VLD+ V RK E+
Sbjct: 141 GVLDRAALVLRKVEV 155
>gi|237736360|ref|ZP_04566841.1| transcription antitermination protein NusB [Fusobacterium
mortiferum ATCC 9817]
gi|229421402|gb|EEO36449.1| transcription antitermination protein NusB [Fusobacterium
mortiferum ATCC 9817]
Length = 132
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR + +++ ++ ST E++ Y E + +L + + ++
Sbjct: 2 SRRVAREELFKLVFESELKEESTKEVLDNYLK---------RDEVLTNENELAFIKKYMN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + I I++ +T WSF R+ + ++LR V EL+ C + P E++++E V +A
Sbjct: 53 GIAENNDRILETINNNITG-WSFERIGNVEKALLRCSVYELL-CETTPHEIVVNEVVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ +F+N VL K+ K
Sbjct: 111 KLYGDEKTSEFVNGVLAKIINK 132
>gi|289549038|ref|YP_003474026.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
gi|289182655|gb|ADC89899.1| NusB antitermination factor [Thermocrinis albus DSM 14484]
Length = 138
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A LYQ ++ G A+ + ++++ + R ++ M
Sbjct: 6 KAREDAFLILYQWEMKGEDP----------FALAEEYIRMKNIKYSERRRYVRKMVRTFM 55
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + +D ++ E W RL + +ILR + EL+ + I +YV + +
Sbjct: 56 ENWKEVDKILGQM-VEDWDLDRLGYVERNILRVALTELMFLKVKNPKQAIFDYVKLTLKY 114
Query: 138 FYGDEPKFINAVLDKVSRKE 157
+F+N VL + R +
Sbjct: 115 AGKTPARFVNGVLGRFLRDK 134
>gi|312111726|ref|YP_003990042.1| sun protein [Geobacillus sp. Y4.1MC1]
gi|311216827|gb|ADP75431.1| sun protein [Geobacillus sp. Y4.1MC1]
Length = 447
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 14/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L ++ E E Y + D+ I++G + R
Sbjct: 7 REVALETLLAVE-----------EKEAYSNLLLNNMIETHRLSERDVRLLTEIVYGTIQR 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + R + +LR + +++ +P I E V IA +
Sbjct: 56 RDTLDYYLAPFLKKARKLERW---VRVLLRLTLYQVLYLDRIPDRAAIFEAVEIAKKRGH 112
Query: 140 GDEPKFINAVLDKVSRK 156
+N V+ + R+
Sbjct: 113 QGIASLVNGVMRAILRQ 129
>gi|77917857|ref|YP_355672.1| Sun protein [Pelobacter carbinolicus DSM 2380]
gi|77543940|gb|ABA87502.1| Sun protein [Pelobacter carbinolicus DSM 2380]
Length = 451
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L ++ G + D+ L D +++GV+
Sbjct: 7 RHIAFDILDKVH-NGAFADLAL----------DSALQALPDMDVRDRALATELVYGVLRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D + + ++++ + ++LR G ++++ +P + E V +A
Sbjct: 56 RGRLDFALQQLC--RKPLAKVEPAVLNLLRLGCYQILQLDRIPNHAAVFETVELARRLKL 113
Query: 140 GDEPKFINAVLDKVSRK 156
FIN +L + R+
Sbjct: 114 QRATGFINGILRGLVRQ 130
>gi|146318081|ref|YP_001197793.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|146320260|ref|YP_001199971.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|253751274|ref|YP_003024415.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
SC84]
gi|253753175|ref|YP_003026315.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
P1/7]
gi|253754998|ref|YP_003028138.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
BM407]
gi|145688887|gb|ABP89393.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 05ZYH33]
gi|145691066|gb|ABP91571.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus suis 98HAH33]
gi|251815563|emb|CAZ51146.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis SC84]
gi|251817462|emb|CAZ55203.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis BM407]
gi|251819420|emb|CAR44892.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus suis P1/7]
gi|292557843|gb|ADE30844.1| rRNA SAM-dependent methyltransferase [Streptococcus suis GZ1]
Length = 437
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ + AR A+ L Q+ G Y A + S D
Sbjct: 1 MVINKHETARSLALSVLEQVFDQG-----------AYSNIALNKALESSRLSAQDKGLAT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + RK ++ ++ + ++ D + +L + +L+ +P +++E
Sbjct: 50 ELVYGTVSRKITLEWYLAHFIEDREKL---DTWVYYLLMLSLYQLVYLDKLPTHAVVNEA 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
V IA D KF+NA+L K+S+
Sbjct: 107 VNIAKRKPGTD--KFVNAILRKLSQD 130
>gi|291522862|emb|CBK81155.1| ribosomal RNA small subunit methyltransferase RsmB [Coprococcus
catus GD/7]
Length = 455
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R L ++ + ++S+ D + + G ++
Sbjct: 8 RAIVYDMLMSVEKENTPSHLLLSQTL----------MKYQYLDKRDRAFISRLFRGTLEY 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I + +++ + +ILR V ++++ +P E V +
Sbjct: 58 EIFLDGVIRQFSSV--RLNKIKTPIKAILRMSVYQILKMDHIPDAAACDEAVKLTRKRGL 115
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+ F+N VL +SR +E+
Sbjct: 116 KNLSGFVNGVLRNISRNKEV 135
>gi|193212287|ref|YP_001998240.1| sun protein [Chlorobaculum parvum NCIB 8327]
gi|193085764|gb|ACF11040.1| sun protein [Chlorobaculum parvum NCIB 8327]
Length = 428
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L ID+ G +E + S D R ++ G +
Sbjct: 3 AREIALRVL--IDLDGMKKSE----------ELLNRMLERSSLERNDRALARELVAGTLK 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ D +I + +++ +L ILR GV +L+ VP ++E V +A F
Sbjct: 51 YRLQCDFVIERFY--RHDYAKAAEVLKHILRLGVYQLLHLDRVPRSAAVNESVKLARKFK 108
Query: 139 YGDEPKFINAVLDKVSR 155
K +N +L +S+
Sbjct: 109 GEHLAKLVNGLLRNLSK 125
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + + +D + + ++ GV+
Sbjct: 2 KPREIAYKILQEVL-----------SKEAYANISFNKHLKGQELKEIDRGFTKELVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + + + L G+ +L+ VP I+E V IA
Sbjct: 51 ERKYTLDFILSFFVKKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRNYDREKE 126
>gi|56416682|ref|YP_153756.1| N utilization substance protein B [Anaplasma marginale str. St.
Maries]
gi|222475047|ref|YP_002563462.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Florida]
gi|56387914|gb|AAV86501.1| N utilization substance protein B [Anaplasma marginale str. St.
Maries]
gi|222419183|gb|ACM49206.1| N utilization substance protein B (nusB) [Anaplasma marginale str.
Florida]
Length = 177
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 7/165 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M DL + AR AVQ Y + E + + E+
Sbjct: 5 MEADSKSDDLPWYSGKTSARFLAVQGAYSMMFS-SYAAEDLDGLLEH----LCEMRGVFG 59
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD + I+ ++ R ID IS + + WS R++++ SI+RAG+ EL+ S
Sbjct: 60 LGRVDKKLLTKILRSMLARCSEIDATISEHINKNWSMDRINLVSLSIMRAGICELLCF-S 118
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
++I+EYV IA E F+NA+L+K ++ R V
Sbjct: 119 TNESIVINEYVDIASYALEDAEVNFVNAILNK-AKTVRFGRGTEV 162
>gi|196230011|ref|ZP_03128874.1| sun protein [Chthoniobacter flavus Ellin428]
gi|196225608|gb|EDY20115.1| sun protein [Chthoniobacter flavus Ellin428]
Length = 410
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 22/150 (14%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + V AL + + + EI+ ++ +D +F GV+
Sbjct: 4 RQSCVLALLEWEKGKYFSDEILHT-----------SLEKNPMQPLDRAFFMETFFGVLRN 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D LI R+D ++LR G+ ++ + P ++E V +
Sbjct: 53 LSRLDFLIGQLREG-----RIDPQTRAVLRLGLYQIFHMRTAP-HAAVNESVAL-----G 101
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
G +NA+L + R++E S ++A +
Sbjct: 102 GRARGLVNAILRRALREKEALESDLLAASS 131
>gi|315637897|ref|ZP_07893084.1| transcription antitermination factor NusB [Campylobacter
upsaliensis JV21]
gi|315482009|gb|EFU72626.1| transcription antitermination factor NusB [Campylobacter
upsaliensis JV21]
Length = 132
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR + + LY +++ G + I TE E + + +
Sbjct: 1 MASRHQARQSVISLLYALELNGKNDNFI------------TEFLQEKKIRNEAKNFTLSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV++ Q +D I + ++ I +ILR G EL+ ++ ++I+E V
Sbjct: 49 YNGVLEHLQSLDERI-DVFLNENKIHQIGHIERAILRLGAFELLHTDTL-AAIVINEAVE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PK IN VLD + + ++
Sbjct: 107 LAKEMANENAPKLINGVLDGLQKAKK 132
>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
Length = 444
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AV+ L + T ++ + D + +++G++
Sbjct: 14 KPRQIAVRVLTERLSQEEYTENLLEIELSRA-----------RLSAPDRGLCQELVYGIV 62
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ ++ LI + R + +L+ G+ ++ +P + E V IA +
Sbjct: 63 RWQETLNWLIDRKTEGR----RQKPEMQVLLQLGLYQMFWLDRIPNHAAVHETVEIAKEL 118
Query: 138 FYGDEPKFINAVLDKVSRKE-EIKRSGCVSAITQ 170
+ + F+NAVL R+ E ++ I Q
Sbjct: 119 GFVAQSGFVNAVLRGYLRERVETEKLLEEVKIAQ 152
>gi|227496173|ref|ZP_03926479.1| transcription antitermination protein NusB [Actinomyces
urogenitalis DSM 15434]
gi|226834287|gb|EEH66670.1| transcription antitermination protein NusB [Actinomyces
urogenitalis DSM 15434]
Length = 155
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 6/161 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT K R AR A++ L++ D G E R A E V S
Sbjct: 1 MTDSARIKHT--VTARTKARRRAIEILFEADQRG--LLRAGEAAENLRALA-AERAVHSA 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ R I+ GV D + ID I ++ WS +R+ + +I R E++
Sbjct: 56 NHTEAPAYTREILTGVADHLEQIDEHI-ETYSQGWSLTRMPAVDRAIARVTTWEIVYNDD 114
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V V V + E +A D P+++ VL ++ + R
Sbjct: 115 VDVPVALDEAQTLAKMLSTDDSPRYLGGVLGRIGDLADTLR 155
>gi|332975638|gb|EGK12527.1| NusB antitermination factor [Psychrobacter sp. 1501(2011)]
Length = 244
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 68/168 (40%), Gaps = 10/168 (5%)
Query: 2 TIQDNKKDLKLSHRR------GIARLAAVQALYQIDIIGCSTTEII--SEYETYRFCADT 53
T +N+ D+ S + AR A+Q LY+ + +
Sbjct: 9 TEDNNQFDINESSYKTSHAAVRKARRFALQGLYEWLMTDHRFEQTGKGEWKANPPHDIAA 68
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ V L ++ ++ + ++ ++ LI+ L + ++DM+ ++L G
Sbjct: 69 RTRASNAMHTVHLGYYHTLMREIPEQIDELEALIAEHLDRQ--IDQIDMVEHAVLLIGAY 126
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL +P +V++ E + + F D K INAV+DK++ +
Sbjct: 127 ELKHSLHIPYKVVLDEAMKLNTHFGATDAHKLINAVMDKLAAQLRAVE 174
>gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
Length = 437
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFINQAYSNIALNKHFKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|293364893|ref|ZP_06611610.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
gi|307703146|ref|ZP_07640092.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis ATCC 35037]
gi|291316343|gb|EFE56779.1| RNA methyltransferase Sun [Streptococcus oralis ATCC 35037]
gi|307623221|gb|EFO02212.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
oralis ATCC 35037]
Length = 437
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S + D I++G +
Sbjct: 7 ARSLALAVL-----------EDVLVNQAYSNIALNKHLKGSQFSAADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIQDRDKL---DNWLYILLLLSAYQLRYLDKIPNHAVVNEAVDLAKARK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + + +D + + ++ GV+
Sbjct: 2 KPREIAYKILQEVL-----------SKEAYANISFNKHLKGQELKEIDRGFTKELVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + + + L G+ +L+ VP I+E V IA
Sbjct: 51 ERKYTLDFILSFFVNKAPDLKTM-----IFLEMGLYQLLYMDKVPSYAAINETVNIAKKV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRNYDREKE 126
>gi|302023430|ref|ZP_07248641.1| ribosomal RNA small subunit methyltransferase [Streptococcus suis
05HAS68]
Length = 444
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 17/146 (11%)
Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ + AR A+ L Q+ G Y A + S D
Sbjct: 1 MVINKHETARSLALSVLEQVFDQG-----------AYSNIALNKALESSRLSAQDKGLAT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + RK ++ ++ + ++ D + +L + +L+ +P +++E
Sbjct: 50 ELVYGTVSRKITLEWYLAHFIEDREKL---DTWVYYLLMLSLYQLVYLDKLPTHAVVNEA 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRK 156
V IA D KF+NA+L K+S+
Sbjct: 107 VNIAKRKPGTD--KFVNAILRKLSQD 130
>gi|304313374|ref|YP_003812972.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
gi|301799107|emb|CBL47350.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HdN1]
Length = 492
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
E+ R D + + + + I +GV +D L++ + D L
Sbjct: 27 ESLRALNDLLPSAQERLPEAERKLAQEIAYGVCRWFTRLDKLLNPL--LEHPLKARDRDL 84
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
++L G+ +L +P ISE V + +N +L +V R++ +
Sbjct: 85 HALLLVGLYQLYYTR-IPDHAAISETVEATRQLEKPWASRLVNGILRRVQREKSQLETAL 143
Query: 165 VS 166
Sbjct: 144 PD 145
>gi|306829015|ref|ZP_07462206.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
gi|304428820|gb|EFM31909.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis ATCC 6249]
Length = 437
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARNLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L ++ VP +++E V IA
Sbjct: 56 RKLTLEWYLSHFIQDRDKL---DNWLYVLLLMSAYQVRFLDKVPDHAVVNEAVEIAKARK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|295397759|ref|ZP_06807828.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
11563]
gi|294973971|gb|EFG49729.1| transcription antitermination factor NusB [Aerococcus viridans ATCC
11563]
Length = 217
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 38/190 (20%)
Query: 17 GIARLAAVQALYQIDIIGC-STTEIISE------------------------YETYRFCA 51
R AV Y+ + S + YE +
Sbjct: 6 SQIRELAVLISYEQEFNPQLSLESAFNHILQNHRKLGQKVNFEELTEEEFIEYENHAIKL 65
Query: 52 DTELDVESVYLHVDL-----------EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
++ S H D + R ++ GV + ID +I + + WS RL
Sbjct: 66 KDSIENFSAKNHFDKLPDVTEDVTVPAYLRTLVEGVKANRFEIDQMIDNHIHGNWSVQRL 125
Query: 101 DMILCSILRAGVLELIECHSV--PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+++ ILR V EL+ P V ++E + +A + KFIN +L V + +
Sbjct: 126 ELVNLQILRVAVFELLFTDEETVPRVVAVNEAIELAKLYSDDRARKFINGILSNVLAELK 185
Query: 159 IKRSGCVSAI 168
+G V +
Sbjct: 186 ANANGDVKPV 195
>gi|325977628|ref|YP_004287344.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177556|emb|CBZ47600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 440
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + + D I++G
Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ +L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIKDRDKLDSWVYY---LLMLSLYQLVYLDKIPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134
>gi|282856378|ref|ZP_06265657.1| transcription antitermination factor NusB [Pyramidobacter piscolens
W5455]
gi|282585749|gb|EFB91038.1| transcription antitermination factor NusB [Pyramidobacter piscolens
W5455]
Length = 174
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 17 GIARLAAVQALYQID-IIGCSTTEII------SEYETYRFCADTELDVESVYLHVDLEWF 69
AR+ Q L +D + G ++ + A+ + ES D E
Sbjct: 13 HAARVRLFQILCALDSLGGKKLDQLEVEASLEELFVEPEAVAENGAEAESGETDADEESV 72
Query: 70 RVIIHGVMDRKQHIDLLI-----------SSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ R+ + + +W R+ ++ +I+R + E +
Sbjct: 73 LTRVPFADYRRSCEHACLVRRALPEIDALIETYSTEWKTERMSLVDRTIIRLALYEAVIA 132
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
VP V +SE V +A ++ D +F+N VL ++ +
Sbjct: 133 KKVPPGVALSEAVRLAKEYGSDDSSRFVNGVLARIVK 169
>gi|319937360|ref|ZP_08011767.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
gi|319807726|gb|EFW04319.1| hypothetical protein HMPREF9488_02602 [Coprobacillus sp. 29_1]
Length = 134
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R AR A +YQ ++ S +I++ + + + R
Sbjct: 1 MEKTRRQIAREKATIGVYQNLLVDSSLEDILTFLSEEKTL---------TKSEETMAFSR 51
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ + K+ LI L + W F RL M+ +IL EL+E +P ++I+E
Sbjct: 52 WLVETTLQNKESYQTLIEKHLKKGWKFERLSMMEKAILMIAACELLESD-LPKTIVINEA 110
Query: 131 VCIAHDFFYGDEPKFINAVLDKVS 154
V A F D KFIN VL ++
Sbjct: 111 VLNAKKFCDDDSYKFINGVLGQII 134
>gi|300172801|ref|YP_003771966.1| N utilization substance protein B [Leuconostoc gasicomitatum LMG
18811]
gi|299887179|emb|CBL91147.1| N utilization substance protein B homolog [Leuconostoc
gasicomitatum LMG 18811]
Length = 138
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 12 LSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+S+ R +R AA Q L+ ++ S +L + ++
Sbjct: 1 MSNLTRHESRQAAFQVLFALEKDPKSNN-------------IDKLYDIVLEGKDYDDYLP 47
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++GV+ K +D I++ L W+ +R++ ILR + EL+ VP +V I E
Sbjct: 48 RLVNGVLGTKSELDEQITAHLANGWAINRINKADLIILRLAIYELLNNL-VPYKVAIDEA 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
+ + F + KF+N +L
Sbjct: 107 LILTKTFSDEESRKFVNGLLKNF 129
>gi|256425201|ref|YP_003125854.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
gi|256040109|gb|ACU63653.1| NusB antitermination factor [Chitinophaga pinensis DSM 2588]
Length = 309
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
E++ + + LE+ R ++ V+D+K++ LI L +
Sbjct: 174 SDDAEMMDLLVANYMHKPHLFNFLQLISREKLEYARELLLTVLDKKEYCLELIKPKL-QN 232
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
W R+ + ++ GV E + ++P +V I+EY+ +A + +F+N +LD +
Sbjct: 233 WDPERIAAVDMLLMEMGVCEFLYFPTIPTKVTINEYIDLAKAYSTPQSGQFVNGILDNIL 292
Query: 155 RKEEIKRS 162
+ +
Sbjct: 293 KDLDQANQ 300
>gi|257058561|ref|YP_003136449.1| sun protein [Cyanothece sp. PCC 8802]
gi|256588727|gb|ACU99613.1| sun protein [Cyanothece sp. PCC 8802]
Length = 451
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ S + AR A+ L +I+ G T I + D
Sbjct: 1 MSNSDQITHARPLALVILREIERRGTFTDIAIDR-----------GLKSTDLSGSDRALV 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++G++ RK+ +D LI + + L IL G+ +L +P ++
Sbjct: 50 TELVYGIVRRKRTLDTLIDQLGKKAS--HQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V +A + +N +L + R +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENN 139
>gi|218245524|ref|YP_002370895.1| sun protein [Cyanothece sp. PCC 8801]
gi|218166002|gb|ACK64739.1| sun protein [Cyanothece sp. PCC 8801]
Length = 451
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 13/152 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ S + AR A+ L +I+ G T I + D
Sbjct: 1 MSNSDQITHARPLALVILREIERRGTFTDIAIDR-----------GLKSTDLSGSDRALV 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++G++ RK+ +D LI + + L IL G+ +L +P ++
Sbjct: 50 TELVYGIVRRKRTLDTLIDQLGKKAS--HQQPPDLRLILYIGLYQLRYLSQIPPSAAVNT 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V +A + +N +L + R +
Sbjct: 108 AVNLAKENSLQRLSGVVNGILRQYIRLAQENN 139
>gi|255522012|ref|ZP_05389249.1| sun protein [Listeria monocytogenes FSL J1-175]
Length = 444
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|226224425|ref|YP_002758532.1| RNA-binding Sun protein [Listeria monocytogenes Clip81459]
gi|225876887|emb|CAS05596.1| Putative RNA-binding Sun protein [Listeria monocytogenes serotype
4b str. CLIP 80459]
Length = 444
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|312793191|ref|YP_004026114.1| nusb antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312180331|gb|ADQ40501.1| NusB antitermination factor [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 134
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ LY +I+ Y+ +R EL+ + + +D ++ ++ GV+ +Q I
Sbjct: 1 MKILYAYRF-EDGQQDIMEFYKKFR-----ELNQDEDFKDIDEKYLERLLKGVIQNQQRI 54
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D LI ++ W SRL M+ ++R V EL+ VPV V I E V +A F P
Sbjct: 55 DNLIEKY-SKDWPLSRLPMVELELMRIAVYELLFEEDVPVSVAIDEAVDMASIFGIEKAP 113
Query: 144 KFINAVLDKVS 154
F+N +L +++
Sbjct: 114 SFVNGILGRIA 124
>gi|299821751|ref|ZP_07053639.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
gi|299817416|gb|EFI84652.1| ribosomal RNA small subunit methyltransferase B [Listeria grayi DSM
20601]
Length = 445
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 17/157 (10%)
Query: 15 RRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
++ + R AA++ L +I+ + + ++ +D ++
Sbjct: 2 KKTQSVREAALEILLKIEKNQS-----------FSHLLINDALKKTKLEALDRNLLTELV 50
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+G + R+ +D + + L + + + +LR V +L+ VP I+ E I
Sbjct: 51 YGTLQRRLTLDYYLQTFLK-----KQPEDWVLELLRMSVYQLVYLDKVPEHAILHEAGEI 105
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
A + KF+N VL + R+ + + Q
Sbjct: 106 AKQRSHQGVTKFVNGVLRNLIRQGIPAITDIADPVEQ 142
>gi|28199615|ref|NP_779929.1| transcription antitermination protein NusB [Xylella fastidiosa
Temecula1]
gi|182682359|ref|YP_001830519.1| transcription antitermination protein NusB [Xylella fastidiosa M23]
gi|32129808|sp|Q87AS8|NUSB_XYLFT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238691093|sp|B2I8Q4|NUSB_XYLF2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|28057730|gb|AAO29578.1| transcription termination factor [Xylella fastidiosa Temecula1]
gi|182632469|gb|ACB93245.1| NusB antitermination factor [Xylella fastidiosa M23]
gi|307578641|gb|ADN62610.1| transcription antitermination protein NusB [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 157
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y I G ++I+ + E Y DL +F ++ GV+ +D +
Sbjct: 34 YAWQISGGVAKQVIAHF-----------AHEQAYEVADLVYFEDLVEGVLTHCAELDEKL 82
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L + +D I ++LR G EL+ VP V+I+E + A F ++N
Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140
Query: 148 AVLDKVS---RKEEI 159
VLD+ + RK E+
Sbjct: 141 GVLDRAALALRKVEV 155
>gi|71276430|ref|ZP_00652706.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
gi|71900509|ref|ZP_00682639.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
gi|170730978|ref|YP_001776411.1| transcription antitermination protein NusB [Xylella fastidiosa M12]
gi|238687943|sp|B0U4K2|NUSB_XYLFM RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|71162746|gb|EAO12472.1| Antitermination protein NusB [Xylella fastidiosa Dixon]
gi|71729749|gb|EAO31850.1| Antitermination protein NusB [Xylella fastidiosa Ann-1]
gi|167965771|gb|ACA12781.1| transcription termination factor [Xylella fastidiosa M12]
Length = 157
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y I G ++I+ + E Y DL +F ++ GV+ +D +
Sbjct: 34 YAWQISGGVAKQVIAHF-----------AHEQAYEVADLVYFEDLVEGVLTHCAELDEKL 82
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ L + +D I ++LR G EL+ VP V+I+E + A F ++N
Sbjct: 83 TPYLDR--TIEEVDAIERAVLRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVN 140
Query: 148 AVLDKVS---RKEEI 159
VLD+ + RK E+
Sbjct: 141 GVLDRAALALRKVEV 155
>gi|326693796|ref|ZP_08230801.1| 16S rRNA methyltransferase B [Leuconostoc argentinum KCTC 3773]
Length = 452
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 12 LSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + + ++ + + +L+ + +L + ++ + +P I +
Sbjct: 49 LTTLVYGVIQHRLTFEYWLAPFVGD----KKLNPWVRELLYTALFQMQYLNKIPQHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
E + +A + KF+ A+L +SR+ + IT+
Sbjct: 105 ESIEVAKILGHVGTAKFVTAILHNISRQGLPDTAAIADPITR 146
>gi|306825761|ref|ZP_07459100.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432122|gb|EFM35099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 437
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSHLSAADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V ++ VP +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDKL---DNWLYVLLLMSVYQVRFLDKVPDHAVVNEAVELAKVRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -QGSEKLVNAVLRRILRE 129
>gi|163785218|ref|ZP_02179895.1| transcription antitermination protein NusB [Hydrogenivirga sp.
128-5-R1-1]
gi|159879514|gb|EDP73341.1| transcription antitermination protein NusB [Hydrogenivirga sp.
128-5-R1-1]
Length = 146
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 16 RGIARLAAVQALYQIDI-IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A++ LY DI E + +T D+ L++ II+
Sbjct: 6 RKKAREIALKVLYAYDIDKEKDINETLE---------ETISDIRQNLSEKTLKYAYQIIN 56
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV + ID +I S L + W RL I ++LR G EL+ + + + + IA
Sbjct: 57 GVYEYIDEIDNIIQSHLKD-WRLDRLGYIERALLRIGTYELVFSDIPDKKRVFMDILDIA 115
Query: 135 HDFF-YGDEPKFINAVLDKVSRKEEIK 160
+ KFIN VL K+ + + +
Sbjct: 116 KCYNLDEKALKFINGVLSKIYKDFKAQ 142
>gi|150390264|ref|YP_001320313.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
gi|149950126|gb|ABR48654.1| NusB antitermination factor [Alkaliphilus metalliredigens QYMF]
Length = 129
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ L+++++ E I Y + E+ I ++ + I
Sbjct: 1 MKVLFEMEMNNEMNVESIKLYMDREPQKIEQQ-----------EYVHTSITKTIENLEEI 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I ++ W +R+ + +ILR + E++ +P V ++E + + + +
Sbjct: 50 DTYI-KQYSKGWKLNRIANVDLAILRLALTEMLHMGEIPYRVSVNEAIELGKKYSAEESA 108
Query: 144 KFINAVLDKVSRKEEIKRS 162
FIN +L + +EE ++
Sbjct: 109 SFINGILGRFIEEEEGIKN 127
>gi|303261834|ref|ZP_07347780.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
gi|303263697|ref|ZP_07349619.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
gi|302636917|gb|EFL67406.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP14-BS292]
gi|302646735|gb|EFL76960.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS397]
Length = 438
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|327441110|dbj|BAK17475.1| tRNA and rRNA cytosine-C5-methylase [Solibacillus silvestris
StLB046]
Length = 453
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 21/150 (14%)
Query: 12 LSHRR-----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+S ++ G R AA+ L +D Y + + D
Sbjct: 1 MSKKKQVIWDGNVRDAALTILLTVDKSQ-----------AYSNLLLHQTIEKYKIDAKDR 49
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ +G + K +D + + ++D+ + +LR + ++ +P
Sbjct: 50 GLLTELTYGTLQHKLTLDYYLEPFIRG-----KVDIWVRWLLRMSLYQMQYLTRIPAHAA 104
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++E V IA + +N +L + R+
Sbjct: 105 VNEAVEIAKRRGHKGIASMVNGILRSILRE 134
>gi|166032716|ref|ZP_02235545.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
27755]
gi|166027073|gb|EDR45830.1| hypothetical protein DORFOR_02431 [Dorea formicigenerans ATCC
27755]
Length = 433
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L I G + + + + ++ G ++R
Sbjct: 8 REIILETLLLITRDGEYSHIALKNVLDKY----------QYLEKRERAFITRVVEGTLER 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I+ ++ ++ +ILR+ V +L VP + +E V +A +
Sbjct: 58 QIEIDYIINQFSKV--KVNKQKPVIRTILRSSVYQLKYMDHVPDSAVCNEAVKLAGKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+ F+N VL +SR ++
Sbjct: 116 VNLKGFVNGVLRNISRNLDM 135
>gi|303258671|ref|ZP_07344651.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
gi|303266637|ref|ZP_07352521.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
gi|303268527|ref|ZP_07354320.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
gi|302640172|gb|EFL70627.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP-BS293]
gi|302641922|gb|EFL72276.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS458]
gi|302643799|gb|EFL74062.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS457]
Length = 437
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 17/149 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K+ +R A A Y I Y +L ++ L D
Sbjct: 1 MKIKS----SRELAFVA-YTRIIQDQ----------AYSNLVLNQLLGKTDLLAQDKALA 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I +G + + ID + + S+L +LR G +++ VP ++E
Sbjct: 46 SRITYGTLQWQGLIDYYLKTL--SHRPLSKLSNKALFLLRMGAYQILFLDRVPPSASVNE 103
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V +AH + F+N +L + RK++
Sbjct: 104 TVKVAHRRTHKGIANFVNGILRNLIRKKD 132
>gi|116873257|ref|YP_850038.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742135|emb|CAK21259.1| sun protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 444
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|46908054|ref|YP_014443.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47093059|ref|ZP_00230837.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|254826136|ref|ZP_05231137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|254852729|ref|ZP_05242077.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|254933294|ref|ZP_05266653.1| sun protein [Listeria monocytogenes HPB2262]
gi|300763865|ref|ZP_07073862.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|46881324|gb|AAT04620.1| sun protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47018560|gb|EAL09315.1| sun protein [Listeria monocytogenes str. 4b H7858]
gi|258606052|gb|EEW18660.1| sun protein [Listeria monocytogenes FSL R2-503]
gi|293584854|gb|EFF96886.1| sun protein [Listeria monocytogenes HPB2262]
gi|293595376|gb|EFG03137.1| sun protein [Listeria monocytogenes FSL J1-194]
gi|300515601|gb|EFK42651.1| sun protein [Listeria monocytogenes FSL N1-017]
gi|332312263|gb|EGJ25358.1| Ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes str. Scott A]
Length = 444
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|293192887|ref|ZP_06609731.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
gi|292819943|gb|EFF78942.1| n utilization substance protein B [Actinomyces odontolyticus F0309]
Length = 320
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A +++ D G E++ + R V + E+ II
Sbjct: 9 SRTKARKRAADVVFEADQRGMGRDPEVLRDLLRER-------RVITAAQTPLPEYSIQII 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVC 132
GV D + ID LI R+ + +++R V E+ V V I E +
Sbjct: 62 AGVADSLRRIDDLI-EAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAIS 120
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
I P+F+NAVLD + +
Sbjct: 121 IVRSISTDASPRFVNAVLDAIRKDI 145
>gi|182684677|ref|YP_001836424.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
gi|182630011|gb|ACB90959.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CGSP14]
Length = 438
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|154508767|ref|ZP_02044409.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
17982]
gi|153798401|gb|EDN80821.1| hypothetical protein ACTODO_01276 [Actinomyces odontolyticus ATCC
17982]
Length = 320
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A +++ D G E++ + R V + E+ II
Sbjct: 9 SRTKARKRAADVVFEADQRGMGRDPEVLRDLLRER-------RVITAAQTPLPEYSIQII 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVC 132
GV D + ID LI R+ + +++R V E+ V V I E +
Sbjct: 62 AGVADSLRRIDDLI-EAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAIS 120
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
I P+F+NAVLD + +
Sbjct: 121 IVRSISTDASPRFVNAVLDAIRKDI 145
>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
Length = 443
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR V L ++ Y + D I++G +
Sbjct: 3 NARKICVDIL-EMVFNKN----------AYSNIVLRQSLNNQKINDKDKGLITEIVYGTI 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ID ++++ L + +D + +ILR + ++ +P ++E V IA
Sbjct: 52 KYKYTIDTILNAYLKKGT--KSVDSYILNILRTTIYQIKYLDKIPNFAAVNEAVNIAKKH 109
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
E K +N VL R +
Sbjct: 110 KSIGESKLVNGVLRNYLRNLD 130
>gi|225849626|ref|YP_002729860.1| transcription antitermination protein NusB [Persephonella marina
EX-H1]
gi|254772650|sp|C0QT45|NUSB_PERMH RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|225645609|gb|ACO03795.1| transcription antitermination factor NusB [Persephonella marina
EX-H1]
Length = 142
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 11/152 (7%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR + LY DI G EI+ D D+ +++
Sbjct: 1 MGKYRKKAREIVFRTLYTYDIKGGDLFEIME---------DHIKDIRGKLSKKTVDYIYS 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ G+ + ID ++ L W RL ++LR GV EL+ + + +
Sbjct: 52 ILKGIDEHLPEIDDILRENLKN-WRLERLGYPERALLRLGVYELLFSDIEDKGRVFMDIL 110
Query: 132 CIAHDFF-YGDEPKFINAVLDKVSRKEEIKRS 162
+ + D KFIN VL V + +
Sbjct: 111 DLTKCYIDNPDTVKFINGVLSTVYKNRQKVNQ 142
>gi|118581643|ref|YP_902893.1| sun protein [Pelobacter propionicus DSM 2379]
gi|118504353|gb|ABL00836.1| sun protein [Pelobacter propionicus DSM 2379]
Length = 452
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R +A L +I GC +++ D F ++
Sbjct: 7 KRSNPRQSACSVLLRIQREGCYADQLMDRELE-----------SGGLTGPDRGLFAELVF 55
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + R+ +D ++SS LT+ SRL+ +LR G+ +L+ +P ++E V +A
Sbjct: 56 GALRRQGTLDHILSSLLTQ--PLSRLEPQALILLRVGLYQLVYLDRIPESAAVNESVNLA 113
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+NAVL R+ +
Sbjct: 114 KK-TLPRASGLVNAVLRNYLRRGD 136
>gi|291166741|gb|EFE28787.1| transcription antitermination factor NusB [Filifactor alocis ATCC
35896]
Length = 142
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 15/146 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R A + LY++ I E + Y + + + ++
Sbjct: 3 RKTEREKAFKLLYEMGIKKEEEIEFLQPYLMREGLME--------------GYVKDVLTL 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ I I +++W SR+ + +IL+ V E++ +PV V I+E V ++
Sbjct: 49 YFSHRDDIMDKIQKS-SKRWDVSRMIKLDLTILKLAVTEMMYYDDIPVAVAINEAVSLSK 107
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ D KFIN +L +++ ++ ++
Sbjct: 108 KYSGEDSYKFINGILKQITIDQKEEK 133
>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 435
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q + +I Y E+ +D + +++G + R
Sbjct: 6 RELAFQTIQEI-FNDY----------AYSNLRINEVLSTGDVSDIDKPLYTELVYGTVKR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + ++ + +L + + I VP II+E V IA
Sbjct: 55 KMTLDFYLRPFVKT-----KIKSWVRQLLWMSLYQYIYLDKVPNHAIINEAVNIAKHRGG 109
Query: 140 GDEPKFINAVLDKVSR 155
+NA+L + R
Sbjct: 110 PHNGNVVNAILRTIFR 125
>gi|269958899|ref|YP_003328688.1| N utilization substance protein B [Anaplasma centrale str. Israel]
gi|269848730|gb|ACZ49374.1| N utilization substance protein B [Anaplasma centrale str. Israel]
Length = 173
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + +L + AR AVQ Y + ST + E+
Sbjct: 1 MGVGSESDNLPWYSGKTSARFLAVQGAYSMMFSSYSTED-----LDELLEHLCEMRDVLG 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VD I+ ++ + ID +IS +++KW+ R+++I S++RAG+ EL+ +
Sbjct: 56 LGRVDKRLLTKILGSMLSKYSEIDAIISEHISKKWTMDRINLISLSVMRAGICELLCF-N 114
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
V+I+EYV IA E F+NA+L+K ++ + R V
Sbjct: 115 TNESVVINEYVDIASYALEDAEVDFVNAILNK-AKVVRLGRGAEV 158
>gi|86151316|ref|ZP_01069531.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153756|ref|ZP_01071959.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|121612229|ref|YP_001000093.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 81-176]
gi|157414677|ref|YP_001481933.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni 81116]
gi|283955805|ref|ZP_06373296.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 1336]
gi|315123942|ref|YP_004065946.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|166215678|sp|A1VYA2|NUSB_CAMJJ RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|172047054|sp|A8FKG9|NUSB_CAMJ8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|85841663|gb|EAQ58910.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85842717|gb|EAQ59929.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87250180|gb|EAQ73138.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 81-176]
gi|157385641|gb|ABV51956.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|283792760|gb|EFC31538.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 1336]
gi|307747317|gb|ADN90587.1| N utilization substance protein B-like protein [Campylobacter
jejuni subsp. jejuni M1]
gi|315017664|gb|ADT65757.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni ICDCCJ07001]
gi|315932685|gb|EFV11615.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 327]
Length = 132
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + LY ++ + E+ E + + +
Sbjct: 1 MATRHQVRQSVISLLYAFELNSQN------------NVFVDEILDEKKIRNEQKNFTLNL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
HG++D +ID ++S L + + L + +ILR G EL+ P ++I+E +
Sbjct: 49 YHGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTD-TPSAIVINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132
>gi|303254346|ref|ZP_07340454.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
gi|301802435|emb|CBW35190.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pneumoniae INV200]
gi|302598697|gb|EFL65735.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae BS455]
Length = 437
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|149006597|ref|ZP_01830296.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
gi|147761895|gb|EDK68858.1| rRNA methylase [Streptococcus pneumoniae SP18-BS74]
Length = 438
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|86741891|ref|YP_482291.1| NusB antitermination factor [Frankia sp. CcI3]
gi|119390771|sp|Q2J830|NUSB_FRASC RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|86568753|gb|ABD12562.1| NusB antitermination factor [Frankia sp. CcI3]
Length = 135
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
E+ ++ GV++R+ ID I+ E W+ R+ + +ILR VLEL+ V
Sbjct: 18 DPPVSEYAVELVEGVVERRGEIDERIARY-AEGWTLERMPPVDRNILRIAVLELLWRPDV 76
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P V I E V +A + P F+N +L + + + +
Sbjct: 77 PDRVAIDEAVELAKNLSTHRSPAFVNGLLASLVEGKGLATPAESTG 122
>gi|225857347|ref|YP_002738858.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae P1031]
gi|225726221|gb|ACO22073.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae P1031]
Length = 437
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L V +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSVYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|290893049|ref|ZP_06556038.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|290557409|gb|EFD90934.1| sun protein [Listeria monocytogenes FSL J2-071]
gi|313608142|gb|EFR84195.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes FSL F2-208]
Length = 444
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|217964025|ref|YP_002349703.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|217333295|gb|ACK39089.1| ribosomal RNA small subunit methyltransferase B [Listeria
monocytogenes HCC23]
gi|307571404|emb|CAR84583.1| tRNA and rRNA cytosine-C5-methylase, putative [Listeria
monocytogenes L99]
Length = 444
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|313623277|gb|EFR93521.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL J1-023]
Length = 446
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|332072908|gb|EGI83389.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA17545]
Length = 437
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|307710564|ref|ZP_07646999.1| transcription antitermination factor NusB [Streptococcus mitis
SK564]
gi|307618672|gb|EFN97813.1| transcription antitermination factor NusB [Streptococcus mitis
SK564]
Length = 141
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R A QAL ++ G T+ + ++
Sbjct: 7 ESRRELRKCAFQALLSLEF-GTDMETACRFAYTH---------DREDADVQIPAFLLNLV 56
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
G+ +K+ +D I+ L W+ RL ++ ++LR G+ E+ P V ++E + +
Sbjct: 57 SGIQAQKEELDKQINQHLKSGWTVERLTLVEKNLLRLGIFEITSFD-TPQLVAVNEAIEL 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A +F +FIN +L + +E
Sbjct: 116 AKNFSDQKSARFINGLLSQFVTEENE 141
>gi|326692420|ref|ZP_08229425.1| N utilization substance protein B [Leuconostoc argentinum KCTC
3773]
Length = 138
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +R AA Q L+ ++ S + L + ++ +++
Sbjct: 5 SRHESRQAAFQVLFALEKDPTS-------------NSIDSLYEIVLDGKDYDDYLPRLVN 51
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ K +D I++ L W+ +R++ ILR + EL VP +V I E + +A
Sbjct: 52 GVLGSKADLDAHITAHLATGWAINRINKADLVILRLAIYELNNQL-VPYKVAIDEALILA 110
Query: 135 HDFFYGDEPKFINAVLDKVS 154
F D+ KF+N +L +
Sbjct: 111 KTFADEDDRKFVNGLLKHFA 130
>gi|83642941|ref|YP_431376.1| sun protein [Hahella chejuensis KCTC 2396]
gi|83630984|gb|ABC26951.1| sun protein [Hahella chejuensis KCTC 2396]
Length = 447
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 17/149 (11%)
Query: 12 LSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R+ + AR AA + L + G S T ++ D + +
Sbjct: 1 MKRRKTLSARAAAAKTLRAVAEEGRSLTTAMAPALE-------------QVEENDRSFLQ 47
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +G ++ + + + + +L +G+ +L P V I+E
Sbjct: 48 ALCYGACRHYLTLEHWLGQL--LRQPIKAKERDIHFLLLSGLHQLAFMDK-PAHVSINET 104
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V + + K +N VL R+++
Sbjct: 105 VNVTKELNKLWATKLVNGVLRSFQRRKDE 133
>gi|160902466|ref|YP_001568047.1| NusB antitermination factor [Petrotoga mobilis SJ95]
gi|160360110|gb|ABX31724.1| NusB antitermination factor [Petrotoga mobilis SJ95]
Length = 151
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + + + + +R + R ++L+Q+ I I+ +E +L+ ++
Sbjct: 1 MTNKRTRMNENIPKKR-MMRKLIFESLFQLSIKDVKLDNILFTFE--------KLNEQAH 51
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ I + K D LI+ +E W R+ I +++R + ELI
Sbjct: 52 LEESYYLEAKQYIEDIYKNKNEYDALINKY-SEGWRVERIGNIEKTVMRIFIYELINKKD 110
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+PV+VI++E + + F+N ++DK++R +
Sbjct: 111 IPVKVILNESTELTKTYATQKAAAFVNGIMDKIARSQ 147
>gi|111224614|ref|YP_715408.1| antitermination factor NusB [Frankia alni ACN14a]
gi|111152146|emb|CAJ63876.1| Antitermination factor NusB [Frankia alni ACN14a]
Length = 124
Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
E+ ++ GV++ + I+ I E W+ R+ + +ILR VLEL+ V
Sbjct: 18 DPPVSEYAEGLVRGVVEHWREINERIGRH-AEGWTLERMPPVDRNILRIAVLELLWRPDV 76
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
P V+I E V +A + P F+N ++D
Sbjct: 77 PPRVVIDEAVELAKNLSTDRSPSFVNGLVD 106
>gi|297570244|ref|YP_003691588.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926159|gb|ADH86969.1| sun protein [Desulfurivibrio alkaliphilus AHT2]
Length = 501
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 23/157 (14%)
Query: 12 LSHRRGIA----------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+ R + R A++ L Q + ++++EY R+ +D
Sbjct: 1 MKKNRSSSPTAAGEGLRPRQVALEILLQQEQQNRPLDQVLAEYPARRWPSD--------- 51
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + R +++ V+ R+ +D +++ +++ + + LR G+ +L+ +
Sbjct: 52 -RRDRQLVRALVYEVLRRRGFLDHVVARYAK--HPLAKMKPLTLAALRLGLAQLLYFDRL 108
Query: 122 PVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKE 157
P I E + F+N +L +R+
Sbjct: 109 PPAAAIDETIRALKAARQPRWITGFVNGLLRNAARER 145
>gi|16801002|ref|NP_471270.1| hypothetical protein lin1936 [Listeria innocua Clip11262]
gi|16414437|emb|CAC97166.1| lin1936 [Listeria innocua Clip11262]
Length = 446
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|257453620|ref|ZP_05618910.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
gi|257449078|gb|EEV24031.1| NusB antitermination factor [Enhydrobacter aerosaccus SK60]
Length = 186
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 13/145 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR VQ LY+ + G + EI + E+ V L ++ ++ +
Sbjct: 29 RKARRFVVQGLYEWLLTGNPSHEIEAH-----------TRSENAMHTVHLGYYHELLSKI 77
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ + I S L W+ RLD + ++L G E+ + VP +V+I E + +
Sbjct: 78 IEQSDDLIAYIDSLLNRPWT--RLDKVEQAVLLVGAYEMKQHLEVPYKVVIDEAIQLNTH 135
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
F D K I+ V+DK+++ +
Sbjct: 136 FGSSDGYKMIHVVMDKIAKDARMPE 160
>gi|168491383|ref|ZP_02715526.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC0288-04]
gi|183574228|gb|EDT94756.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC0288-04]
Length = 437
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DNWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|317501927|ref|ZP_07960111.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|316896607|gb|EFV18694.1| sun protein [Lachnospiraceae bacterium 8_1_57FAA]
Length = 456
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R L ++ G + ++ E T + + + G ++
Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKY----------QYLEKRERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID ++ ++ ++ +ILR+ V ++ S+P + SE V +A +
Sbjct: 58 MTEIDYILDCFSKV--KVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
++N VL V ++ +
Sbjct: 116 SGLRGYVNGVLRSVVKEIDEVE 137
>gi|254445455|ref|ZP_05058931.1| transcription antitermination factor NusB [Verrucomicrobiae
bacterium DG1235]
gi|198259763|gb|EDY84071.1| transcription antitermination factor NusB [Verrucomicrobiae
bacterium DG1235]
Length = 133
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q +Y I ++ + + + E D + +IHG+++ + I
Sbjct: 1 MQYIYAWSIN--RPNNLVDDLTVFFEGLEEERDY--------YSFAEELIHGMVENSEDI 50
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I L + W FSR+ I +ILR EL+ +P V I+E + ++ +F +
Sbjct: 51 DDKIM-GLAKNWDFSRIAKIDLAILRLAAYELLFRKDIPPVVTINEAIDLSKEFSTAESR 109
Query: 144 KFINAVLDKVSRKEE 158
+F+N +LDK+ + +
Sbjct: 110 RFVNGILDKLKGELD 124
>gi|187778898|ref|ZP_02995371.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
15579]
gi|187772523|gb|EDU36325.1| hypothetical protein CLOSPO_02493 [Clostridium sporogenes ATCC
15579]
Length = 442
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + G + ++++ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLYEGAYSNIVLNKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S L +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSYLKN--PIKTMDKNIANILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|148997789|ref|ZP_01825353.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
SP11-BS70]
gi|147756288|gb|EDK63330.1| hypothetical protein CGSSp11BS70_02739 [Streptococcus pneumoniae
SP11-BS70]
Length = 438
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|168575074|ref|ZP_02721037.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae MLV-016]
gi|307068359|ref|YP_003877325.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
AP200]
gi|183578893|gb|EDT99421.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae MLV-016]
gi|306409896|gb|ADM85323.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus pneumoniae
AP200]
Length = 437
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|148989395|ref|ZP_01820763.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
SP6-BS73]
gi|147925145|gb|EDK76225.1| hypothetical protein CGSSp6BS73_07854 [Streptococcus pneumoniae
SP6-BS73]
Length = 437
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|313618293|gb|EFR90347.1| ribosomal RNA small subunit methyltransferase B [Listeria innocua
FSL S4-378]
Length = 446
Score = 77.5 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA D + KF+N VL V RK
Sbjct: 104 DIAKDLGHQGVTKFVNGVLRNVIRK 128
>gi|237738183|ref|ZP_04568664.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
9817]
gi|229420063|gb|EEO35110.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium mortiferum ATCC
9817]
Length = 433
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+ A E E+ + + + +GV+ K +D I T +
Sbjct: 18 KFSNIALNEYFKENNLSKKERGFITELFYGVIRNKIFLDYEIDKRTTTIKK-----DWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIK 160
+ILR + ++ +S V I E +A F KFIN VL R+ +E+K
Sbjct: 73 NILRISMYQISFMNSDDKGV-IWEATELAKKKFSVPVGKFINGVLRSYQREWQEDVKELK 131
Query: 161 RSGC 164
SG
Sbjct: 132 ESGK 135
>gi|183603236|ref|ZP_02710913.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC1087-00]
gi|307127948|ref|YP_003879979.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae 670-6B]
gi|183570571|gb|EDT91099.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC1087-00]
gi|306485010|gb|ADM91879.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae 670-6B]
gi|332199760|gb|EGJ13835.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA41317]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|160880621|ref|YP_001559589.1| sun protein [Clostridium phytofermentans ISDg]
gi|160429287|gb|ABX42850.1| sun protein [Clostridium phytofermentans ISDg]
Length = 453
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + GV+++K +D + ++ ++ ++LR ++
Sbjct: 33 KDLSKQDRAFISRLCLGVLEQKLRLDYDLERFSKI--KVKKMKPVIRNVLRIAAYQIEFM 90
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+P E V + G F+N +L +SR+ + +S + +
Sbjct: 91 EQIPDSAACDEAVKLVKKRGLGGLSGFVNGILRNLSREFQKANGFDISKLNE 142
>gi|57237437|ref|YP_178450.1| transcription antitermination protein NusB [Campylobacter jejuni
RM1221]
gi|86148965|ref|ZP_01067197.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88597364|ref|ZP_01100599.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 84-25]
gi|148926474|ref|ZP_01810157.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|205355968|ref|ZP_03222736.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562040|ref|YP_002343819.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|22095973|sp|Q9PIC0|NUSB_CAMJE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|73621331|sp|Q5HW85|NUSB_CAMJR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|57166241|gb|AAW35020.1| transcription antitermination factor NusB [Campylobacter jejuni
RM1221]
gi|85840323|gb|EAQ57580.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190425|gb|EAQ94399.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112359746|emb|CAL34532.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145844637|gb|EDK21743.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|205346092|gb|EDZ32727.1| transcription termination protein [Campylobacter jejuni subsp.
jejuni CG8421]
gi|284925653|gb|ADC28005.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. jejuni IA3902]
gi|315057805|gb|ADT72134.1| Transcription termination protein NusB [Campylobacter jejuni subsp.
jejuni S3]
gi|315926706|gb|EFV06085.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni DFVF1099]
Length = 132
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + LY ++ + E+ E + + +
Sbjct: 1 MATRHQVRQSVISLLYAFELNSQN------------NVFVDEILDEKKIRNEQKNFTLNL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+G++D +ID ++S L + + L + +ILR G EL+ P ++I+E +
Sbjct: 49 YNGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFTD-TPSAIVINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132
>gi|194397538|ref|YP_002038345.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae G54]
gi|194357205|gb|ACF55653.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae G54]
gi|301794709|emb|CBW37160.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pneumoniae INV104]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|269956515|ref|YP_003326304.1| Fmu (Sun) domain-containing protein [Xylanimonas cellulosilytica
DSM 15894]
gi|269305196|gb|ACZ30746.1| Fmu (Sun) domain protein [Xylanimonas cellulosilytica DSM 15894]
Length = 517
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 22/174 (12%)
Query: 4 QDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
++ S RR AR AA L +D ++ R
Sbjct: 31 DQSRTTQAPSQRRRRTDPARTAAFDVLRDVDGSDAYANLVLPPLLRER-----------G 79
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + + +G + + D +++ C+ RLD + +LR G +++
Sbjct: 80 ITGRDAAFATELTYGTLRLRGRYDAILTRCVDR--PLDRLDPDVLDVLRLGAHQILGMR- 136
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVSAIT 169
VP +SE V + D + +NAVL +V+ + R+ +T
Sbjct: 137 VPTHAAVSETVALTRDRVGTGASQLVNAVLRRVTTTPLTDWLDELRADAPDPVT 190
>gi|15903621|ref|NP_359171.1| rRNA methylase [Streptococcus pneumoniae R6]
gi|15459245|gb|AAL00382.1| rRNA methylase [Streptococcus pneumoniae R6]
Length = 438
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRKE 157
K +NAVL ++ R++
Sbjct: 113 KKGSEKLVNAVLRRILRED 131
>gi|148654081|ref|YP_001281174.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
gi|148573165|gb|ABQ95224.1| NusB antitermination factor [Psychrobacter sp. PRwf-1]
Length = 252
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 4/147 (2%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEII--SEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
AR A+Q LY+ + ++ + V L ++ ++
Sbjct: 38 RKARRFALQGLYEWLMTDHRFEQMGQGEWKANPPHDIAARTRATNAMHTVHLGYYHTLMR 97
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ++ ++ LI+ L ++DM+ ++L G EL +P +V++ E + +
Sbjct: 98 EIPEQITDLEALIAQHLDRA--IDKIDMVEHAVLLIGAYELKNSLHIPYKVVLDEAMKLN 155
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
F D K INAV+DK++ +
Sbjct: 156 THFGATDAHKLINAVMDKLAAQLRTVE 182
>gi|266624677|ref|ZP_06117612.1| ribosomal RNA small subunit methyltransferase B [Clostridium
hathewayi DSM 13479]
gi|288863456|gb|EFC95754.1| ribosomal RNA small subunit methyltransferase B [Clostridium
hathewayi DSM 13479]
Length = 442
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + I+ G ++ +D +I+S + ++ ++ ++LR V +++
Sbjct: 39 LDKQERAFISRIVEGTVEYTLQLDYVINSYSSV--KVKKMKPVIRTLLRMSVYQILYMDR 96
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP + +E V +A + F+N VL +SR +E +
Sbjct: 97 VPDSAVCNEAVKLAQKRKFTGLKGFVNGVLRGISRNKEQLK 137
>gi|168334695|ref|ZP_02692831.1| sun protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 229
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R V AL +++ G ++ + D I G +
Sbjct: 5 REIVVDALVKVEKEGAYLQLVLKKDLEI-------------LESRDRGLATEIATGTLKY 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I+ + S++ + +++R V +L VP I+E V +A +
Sbjct: 52 QIAIDYIINQVSSI--KVSKMKPFIRNLMRISVYQLRYLDKVPAHAAINEAVKLAKSRGF 109
Query: 140 GDEPKFINAVLDKVSR 155
KF+N VL + R
Sbjct: 110 AGLSKFVNGVLRSIER 125
>gi|149011398|ref|ZP_01832645.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
gi|147764388|gb|EDK71319.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae SP19-BS75]
Length = 438
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|116517030|ref|YP_816997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae D39]
gi|148984178|ref|ZP_01817473.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
SP3-BS71]
gi|116077606|gb|ABJ55326.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae D39]
gi|147923467|gb|EDK74580.1| hypothetical protein CGSSp3BS71_03117 [Streptococcus pneumoniae
SP3-BS71]
gi|301800539|emb|CBW33179.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pneumoniae OXC141]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRKE 157
K +NAVL ++ R++
Sbjct: 112 KKGSEKLVNAVLRRILRED 130
>gi|307710617|ref|ZP_07647051.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK564]
gi|307618662|gb|EFN97804.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK564]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARSIALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|225859487|ref|YP_002740997.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae 70585]
gi|225721429|gb|ACO17283.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae 70585]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|148994053|ref|ZP_01823409.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
SP9-BS68]
gi|168488547|ref|ZP_02712746.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae SP195]
gi|147927520|gb|EDK78548.1| hypothetical protein CGSSp9BS68_01863 [Streptococcus pneumoniae
SP9-BS68]
gi|183572591|gb|EDT93119.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae SP195]
Length = 437
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|320093590|ref|ZP_08025479.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
str. F0338]
gi|319979461|gb|EFW10934.1| N utilization substance protein B [Actinomyces sp. oral taxon 178
str. F0338]
Length = 323
Score = 77.5 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 10/145 (6%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTT-EIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R AR A +++ D G E + + R V + E+ II
Sbjct: 9 SRTKARKRAADVVFEADQRGMGRDPEALRDLLRER-------RVITAAQTPLPEYSIQII 61
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL-IECHSVPVEVIISEYVC 132
GV D + ID LI R+ + +++R V E+ V V I E +
Sbjct: 62 AGVADSLRRIDDLI-EAHARVPGLDRVAAVDLAVMRVAVWEMLANSDDVSPIVAIDEAIS 120
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
I P+F+NAVLD + +
Sbjct: 121 IVRSISTDASPRFVNAVLDAIRKDI 145
>gi|91205934|ref|YP_538289.1| transcription antitermination protein NusB [Rickettsia bellii
RML369-C]
gi|157826705|ref|YP_001495769.1| transcription antitermination protein NusB [Rickettsia bellii OSU
85-389]
gi|119390813|sp|Q1RHG4|NUSB_RICBR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166215711|sp|A8GV61|NUSB_RICB8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|91069478|gb|ABE05200.1| N utilization substance protein B [Rickettsia bellii RML369-C]
gi|157802009|gb|ABV78732.1| transcription antitermination protein NusB [Rickettsia bellii OSU
85-389]
Length = 156
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 70/131 (53%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQ + + I E + DT + + + + + F++++ V + ID +I
Sbjct: 21 YQHMLRNNDNIDDIIENVLSFYRNDTSMTDSPIKISLTISHFKMLVKLVFENIDKIDEII 80
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
S+ L + + + ++L ++LR+G+ EL+ +P +VII+EY IA+D E F+N
Sbjct: 81 SNHLVNDKNQNHIPILLQALLRSGICELLFFPDIPTKVIINEYTDIANDMLNDHEIGFVN 140
Query: 148 AVLDKVSRKEE 158
++LDK++ + +
Sbjct: 141 SILDKIAHENK 151
>gi|283955145|ref|ZP_06372647.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 414]
gi|283793358|gb|EFC32125.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. jejuni 414]
Length = 132
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + LY ++ + I E+ E + + +
Sbjct: 1 MATRHQVRQSVISLLYAFELNSQNDVFI------------DEILDEKKIRNEQKNFTLNL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
HG++D +ID ++S L + + L + +ILR G EL+ P ++I+E +
Sbjct: 49 YHGILDNLSNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFSD-TPSAIVINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKFIN VLD + + ++
Sbjct: 107 LAKELANDNSPKFINGVLDALIKAKK 132
>gi|47096543|ref|ZP_00234133.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|254899481|ref|ZP_05259405.1| hypothetical protein LmonJ_06694 [Listeria monocytogenes J0161]
gi|254912380|ref|ZP_05262392.1| sun protein [Listeria monocytogenes J2818]
gi|254936707|ref|ZP_05268404.1| sun protein [Listeria monocytogenes F6900]
gi|47015075|gb|EAL06018.1| sun protein [Listeria monocytogenes str. 1/2a F6854]
gi|258609304|gb|EEW21912.1| sun protein [Listeria monocytogenes F6900]
gi|293590362|gb|EFF98696.1| sun protein [Listeria monocytogenes J2818]
Length = 444
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + + KF+N VL V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128
>gi|257080479|ref|ZP_05574840.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
gi|256988509|gb|EEU75811.1| ribosomal RNA small subunit methyltransferase [Enterococcus
faecalis E1Sol]
Length = 459
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + + L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVKKPQKIDNWVKNLLI---LSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|15895002|ref|NP_348351.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|15024692|gb|AAK79691.1|AE007682_1 Predicted rRNA methylase, SUN family [Clostridium acetobutylicum
ATCC 824]
gi|325509139|gb|ADZ20775.1| rRNA methylase, SUN family [Clostridium acetobutylicum EA 2018]
Length = 441
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ + D I++G + K ID++IS + +++D + +
Sbjct: 21 FSNIVLNKALKGEEISSKDKGLVTEIVYGTIKYKYSIDIIISKFVKT--KINKIDKRVLN 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+LR + ++ +P ++E V I + KF+NAVL R I
Sbjct: 79 VLRMSIYQIRYLDKIPDFAAVNEAVNITKKYISLKSSKFVNAVLRNYLRNPNI 131
>gi|300861499|ref|ZP_07107583.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|295114431|emb|CBL33068.1| ribosomal RNA small subunit methyltransferase RsmB [Enterococcus
sp. 7L76]
gi|300848960|gb|EFK76713.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TUSoD Ef11]
gi|315144147|gb|EFT88163.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2141]
Length = 459
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|183603536|ref|ZP_02717787.2| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC3059-06]
gi|183576422|gb|EDT96950.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC3059-06]
Length = 437
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|111657689|ref|ZP_01408417.1| hypothetical protein SpneT_02001123 [Streptococcus pneumoniae
TIGR4]
gi|149002037|ref|ZP_01826991.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
SP14-BS69]
gi|147759846|gb|EDK66836.1| hypothetical protein CGSSp14BS69_10011 [Streptococcus pneumoniae
SP14-BS69]
Length = 438
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 KKGSEKLVNAVLRRILRE 130
>gi|256788927|ref|ZP_05527358.1| putative Sun-family protein [Streptomyces lividans TK24]
Length = 451
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A +AL +D ++ + + D +++G + R+
Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRKAREKEGP----EKFDARDAALATELVYGTLRRQG 57
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
D +I+ C+ +D + +L GV +L+ +P +S V +A
Sbjct: 58 TYDAIIADCVDR--PLREVDPPVLDVLSLGVHQLLGTR-IPSHAAVSASVELARVVLGDG 114
Query: 142 EPKFINAVLDKVSRKEEIKRSGCVSAI 168
KF+NAVL KV+R + V+
Sbjct: 115 RAKFVNAVLRKVARDDLDGWLERVAPP 141
>gi|239626556|ref|ZP_04669587.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516702|gb|EEQ56568.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 447
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G ++++ D + + G ++
Sbjct: 13 RGIVLDILSEVLDKGSFVHLVLNQALQKY----------QYLDKSDRAFITRVTEGTLEY 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ + ++ ++ ++LR V +++ VP + +E V +A +
Sbjct: 63 LLQIDHIINKY--SRTKTDKMKPLIRNLLRMSVYQILYMDRVPDSAVCNEAVKLAVKRRF 120
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
F+N VL +SR++ S
Sbjct: 121 TGLKGFVNGVLRTISREKASLVFDSPS 147
>gi|257420431|ref|ZP_05597421.1| SUN protein [Enterococcus faecalis X98]
gi|257162255|gb|EEU92215.1| SUN protein [Enterococcus faecalis X98]
gi|315154707|gb|EFT98723.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0043]
Length = 459
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|15901566|ref|NP_346170.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
gi|237649147|ref|ZP_04523399.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974]
gi|237820737|ref|ZP_04596582.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae CCRI 1974M2]
gi|14973229|gb|AAK75810.1| rRNA methyltransferase RsmB [Streptococcus pneumoniae TIGR4]
gi|332074074|gb|EGI84552.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA41301]
gi|332201157|gb|EGJ15228.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA47901]
Length = 437
Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|259047043|ref|ZP_05737444.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
gi|259036093|gb|EEW37348.1| RNA methyltransferase Sun [Granulicatella adiacens ATCC 49175]
Length = 440
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R V+ L ++ Y A + + D + +G
Sbjct: 2 SNVRDICVELLTNVEKNQ-----------AYSTVAFQNVLQKHKLDVRDRGLLTELFYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ RK +D + + ++++ + S+LR V ++ VP I E V IA
Sbjct: 51 IQRKLTLDFYLKPFI---EKQKKMELWVLSLLRMTVYQMAYLDRVPDHAAIFEAVQIAKK 107
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+N VL V R
Sbjct: 108 RGHQGIAKFVNGVLRNVQR 126
>gi|16803862|ref|NP_465347.1| hypothetical protein lmo1822 [Listeria monocytogenes EGD-e]
gi|224501376|ref|ZP_03669683.1| hypothetical protein LmonFR_02455 [Listeria monocytogenes FSL
R2-561]
gi|254829183|ref|ZP_05233870.1| sun protein [Listeria monocytogenes FSL N3-165]
gi|254831576|ref|ZP_05236231.1| hypothetical protein Lmon1_09493 [Listeria monocytogenes 10403S]
gi|16411276|emb|CAC99900.1| lmo1822 [Listeria monocytogenes EGD-e]
gi|258601593|gb|EEW14918.1| sun protein [Listeria monocytogenes FSL N3-165]
Length = 444
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + + KF+N VL V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128
>gi|331082369|ref|ZP_08331495.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330400855|gb|EGG80456.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 454
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 12/142 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R + L +I+ G + +I + + +
Sbjct: 3 NKVNLRELVLGILLEINKEGQHSHLVIRSTLEKY----------QYLEKQERAFLTRVCE 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ K +D ++ + ++ ++ ILR+ V +L+ +VP + E V +A
Sbjct: 53 GTLEYKLRLDYILDQYSSV--PVEKMKPVIREILRSSVYQLLYMDNVPDSAVCDEAVKLA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ + F+N VL KV+R
Sbjct: 111 RKKGFYNLTGFVNGVLRKVARD 132
>gi|332072565|gb|EGI83048.1| nusB family protein [Streptococcus pneumoniae GA17570]
Length = 153
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|311748704|ref|ZP_07722489.1| antitermination factor [Algoriphagus sp. PR1]
gi|126577236|gb|EAZ81484.1| antitermination factor [Algoriphagus sp. PR1]
Length = 394
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++KDL + + + R A ++I+ L ++
Sbjct: 236 MLNYFSEKDLNWTENKSVVRSLA--------------SKILKNAAQVDGSETNPLPEIAM 281
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+F+ I + ++ + LI S T+ W RL I+ + E+ S
Sbjct: 282 NWEEDKEFFQNIFNFTLENEAESKALI-SQKTKNWDIDRLAFTDKIIISMALAEMKNFPS 340
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE----EIKRSGC 164
+PV+V I+EY+ I+ + +F+N +LD +S++ +I++SG
Sbjct: 341 IPVKVSINEYIDISKTYSTPKSKQFVNGLLDVMSKELTESGQIRKSGR 388
>gi|262066420|ref|ZP_06026032.1| transcription antitermination factor NusB [Fusobacterium
periodonticum ATCC 33693]
gi|291379847|gb|EFE87365.1| transcription antitermination factor NusB [Fusobacterium
periodonticum ATCC 33693]
Length = 152
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+AR + ++ + + E+ +++ Y + + + LE+ R I+G+
Sbjct: 17 RLAREELFKLVFGAESTEATPDELKQDFDIY---LQNDEEFIATLNENQLEFIRSSINGI 73
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +I +I T+ W++SR+ ++ ++L E + + P+EV+ +E V +A +
Sbjct: 74 AENYDNIKDIIKKN-TKNWAYSRIGLVERTLLIIATYEFLF-KNTPIEVVANETVELAKE 131
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ +F+N +L + +
Sbjct: 132 YGNEKSYEFVNGILANIGK 150
>gi|288918217|ref|ZP_06412572.1| NusB antitermination factor [Frankia sp. EUN1f]
gi|288350387|gb|EFC84609.1| NusB antitermination factor [Frankia sp. EUN1f]
Length = 146
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
++ ++ GV+ ID I+S + W+ R+ + +ILR VLEL V
Sbjct: 18 DPPVPDYASDLVEGVVAHLGDIDRHIASH-AQGWAIDRMPPVDRNILRIAVLELFWRTDV 76
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-----EIKRSGCVSAITQ 170
P V+I E V +A P F+N +L + +++ E ++ +
Sbjct: 77 PDGVVIDEAVRLAKTISTERSPAFVNGLLASLLQEKPQLLREGPEPAELAGAGE 130
>gi|284802268|ref|YP_003414133.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284995410|ref|YP_003417178.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
gi|284057830|gb|ADB68771.1| hypothetical protein LM5578_2024 [Listeria monocytogenes 08-5578]
gi|284060877|gb|ADB71816.1| hypothetical protein LM5923_1975 [Listeria monocytogenes 08-5923]
Length = 444
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 17/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ R A++ + +I+ Y + + +D
Sbjct: 1 MKKQKT-VRAIALELIIKIENNQS-----------YSHLLINDALKKQKLNPLDKGLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G RK +D ++ L D + ++LR V +L VP I++E
Sbjct: 49 LVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTYLDKVPEHAILNEAG 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + + KF+N VL V RK
Sbjct: 104 DIAKNMGHQGVTKFVNGVLRNVIRK 128
>gi|291287239|ref|YP_003504055.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
gi|290884399|gb|ADD68099.1| NusB antitermination factor [Denitrovibrio acetiphilus DSM 12809]
Length = 147
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
KK+ K R R A +YQ+ I + EI + D + +
Sbjct: 2 KKNFK---ARTRGRKFAYMMMYQLIIADYTPKEITKTFWNSVKEEDESV----------I 48
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
E+ + G + D +I + W++ R+ + ILR V EL P +
Sbjct: 49 EFANRLFTGAAESVDANDEIICRYIRSDWTYERMGEVEKDILRVAVHEL-FRQEAPYYAV 107
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I+++V +A + +N +L+ + + ++
Sbjct: 108 INDFVTLARKYSDEKSASLVNGILENIRKNFKLSE 142
>gi|29377578|ref|NP_816732.1| Sun protein [Enterococcus faecalis V583]
gi|227554542|ref|ZP_03984589.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257417966|ref|ZP_05594960.1| SUN protein [Enterococcus faecalis T11]
gi|29345045|gb|AAO82802.1| Sun protein [Enterococcus faecalis V583]
gi|227176340|gb|EEI57312.1| RNA methyltransferase [Enterococcus faecalis HH22]
gi|257159794|gb|EEU89754.1| SUN protein [Enterococcus faecalis T11]
gi|315573270|gb|EFU85461.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309B]
gi|315581156|gb|EFU93347.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0309A]
Length = 459
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|116491235|ref|YP_810779.1| transcription termination factor [Oenococcus oeni PSU-1]
gi|118586758|ref|ZP_01544195.1| transcription termination protein NusB [Oenococcus oeni ATCC
BAA-1163]
gi|290890780|ref|ZP_06553847.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
gi|116091960|gb|ABJ57114.1| Transcription termination factor [Oenococcus oeni PSU-1]
gi|118432846|gb|EAV39575.1| transcription termination protein NusB [Oenococcus oeni ATCC
BAA-1163]
gi|290479552|gb|EFD88209.1| hypothetical protein AWRIB429_1237 [Oenococcus oeni AWRIB429]
Length = 130
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R R + QA++ ++I ++ + + D ++F
Sbjct: 1 MSLSRQQIRELSFQAIFALEINSDQDKALLKKVLFKQNTID--------------DYFNE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ GV + ++ L + WS R+ ++ G+ EL +P +V + +
Sbjct: 47 LVDGVFAVHKELEEKYKPYLKDNWSLERISKTADIAMQIGLFELTSRIDIPKKVSLDQAT 106
Query: 132 CIAHDFFYGDEPKFINAVL 150
+A +F + KF+N VL
Sbjct: 107 ELAKNFGDESDGKFVNGVL 125
>gi|254303389|ref|ZP_04970747.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323581|gb|EDK88831.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 155
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ + ++ E+ +++ Y + +
Sbjct: 1 MNKNFEEQEKKAKVGVRLAREEVFKLVFGAEATEATSDELKQDFDIY---LQNDEKFIAT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ R I+G+ + +I +I T+ W+++R+ +I ++L E +
Sbjct: 58 LNENQLEFIRSSINGIAENYDNIKDIIKKN-TKNWAYARIGVIERALLIVATYEFSF-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
P+EVI +E V +A ++ +F+N +L + + +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGILANIEKNK 152
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA+ L +D Y E D + +G +
Sbjct: 14 RDAALSILLAVDKNQ-----------AYSNLLLNETIKRHKIEAKDRALLTELTYGTLQH 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + +D + +LR + ++ +P ++E V IA +
Sbjct: 63 KMTLDYYLEPFIRG-----SIDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGH 117
Query: 140 GDEPKFINAVLDKVSRK 156
+N +L V R+
Sbjct: 118 RGIASTVNGILRSVLRQ 134
>gi|329770489|ref|ZP_08261867.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
gi|328836238|gb|EGF85907.1| hypothetical protein HMPREF0433_01631 [Gemella sanguinis M325]
Length = 441
Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 46/141 (32%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR LY+I E Y + ++ + + I++G +
Sbjct: 5 NARKVVYDTLYEIFYN-----------EAYSNITLNKFFKQNGIEEQNKRFISEIVYGTL 53
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ++ ++ + + + IL + ++ P +I E V ++
Sbjct: 54 KNKLFLEHILKTYSKGRVKPK-----VKVILLMSIYQIKFMDKTPNFAVIDEAVKLSKKI 108
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
KF+N +L + R
Sbjct: 109 AGNITGKFVNGILRNIERNIN 129
>gi|307244294|ref|ZP_07526409.1| transcription antitermination factor NusB [Peptostreptococcus
stomatis DSM 17678]
gi|306492444|gb|EFM64482.1| transcription antitermination factor NusB [Peptostreptococcus
stomatis DSM 17678]
Length = 156
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 15 RRGIARLAAVQALYQ-------IDIIGCSTTEIISEYETYRFCA-------DTELDVESV 60
+R ++R ++ LY + + + E + ++
Sbjct: 2 QRKVSREIFMKYLYSRAVSNAGWEGLSQDLDRFLDSVEDDAIEIHKSHGGKEIDMLDSYR 61
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ +D + V D ID I+ W+ + + +ILR V E+ +
Sbjct: 62 EVILDSSYLMDAARAVEDNIGAIDAYINEY-ARNWTTDTMPAVDVAILRLAVAEIKFMFT 120
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+P V E V IA + D K+IN +L V +
Sbjct: 121 IPEVVACDEAVNIAKKYCDDDAYKYINGILGSVMK 155
>gi|227517271|ref|ZP_03947320.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229548022|ref|ZP_04436747.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255970686|ref|ZP_05421272.1| sun protein [Enterococcus faecalis T1]
gi|255974266|ref|ZP_05424852.1| sun protein [Enterococcus faecalis T2]
gi|256618123|ref|ZP_05474969.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256761053|ref|ZP_05501633.1| sun protein [Enterococcus faecalis T3]
gi|256854793|ref|ZP_05560157.1| sun protein [Enterococcus faecalis T8]
gi|256962961|ref|ZP_05567132.1| fmu [Enterococcus faecalis HIP11704]
gi|257083204|ref|ZP_05577565.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257088233|ref|ZP_05582594.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257091364|ref|ZP_05585725.1| SUN protein [Enterococcus faecalis CH188]
gi|307273621|ref|ZP_07554849.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|307284853|ref|ZP_07565009.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|307288887|ref|ZP_07568860.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|312902128|ref|ZP_07761388.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|312905428|ref|ZP_07764542.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|312953217|ref|ZP_07772063.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|227075278|gb|EEI13241.1| RNA methyltransferase [Enterococcus faecalis TX0104]
gi|229306898|gb|EEN72894.1| RNA methyltransferase [Enterococcus faecalis ATCC 29200]
gi|255961704|gb|EET94180.1| sun protein [Enterococcus faecalis T1]
gi|255967138|gb|EET97760.1| sun protein [Enterococcus faecalis T2]
gi|256597650|gb|EEU16826.1| fmu family protein [Enterococcus faecalis ATCC 4200]
gi|256682304|gb|EEU21999.1| sun protein [Enterococcus faecalis T3]
gi|256710353|gb|EEU25397.1| sun protein [Enterococcus faecalis T8]
gi|256953457|gb|EEU70089.1| fmu [Enterococcus faecalis HIP11704]
gi|256991234|gb|EEU78536.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256996263|gb|EEU83565.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257000176|gb|EEU86696.1| SUN protein [Enterococcus faecalis CH188]
gi|306500159|gb|EFM69503.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0109]
gi|306503112|gb|EFM72369.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0860]
gi|306509634|gb|EFM78676.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0855]
gi|310628834|gb|EFQ12117.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0102]
gi|310631157|gb|EFQ14440.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0635]
gi|311290792|gb|EFQ69348.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0470]
gi|315026431|gb|EFT38363.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2137]
gi|315028355|gb|EFT40287.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4000]
gi|315031807|gb|EFT43739.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0017]
gi|315150899|gb|EFT94915.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0012]
gi|315152786|gb|EFT96802.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0031]
gi|315159379|gb|EFU03396.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0312]
gi|315161202|gb|EFU05219.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0645]
gi|315164414|gb|EFU08431.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1302]
gi|315167222|gb|EFU11239.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1341]
gi|315171200|gb|EFU15217.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1342]
gi|315577118|gb|EFU89309.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0630]
gi|323479050|gb|ADX78489.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis 62]
gi|327536239|gb|AEA95073.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis OG1RF]
Length = 459
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|168182584|ref|ZP_02617248.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
gi|182674127|gb|EDT86088.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum Bf]
Length = 442
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 14/144 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + + ++S+ +S D I++G +
Sbjct: 3 NAREVALDVLKAVLFESAYSNIVLSKKLN-----------KSNLKDNDKALITEIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K+ +D++I S + +D + +ILR + ++ +P ++E V ++
Sbjct: 52 KYKETLDIIIQSY--LRNPIKTMDKNIINILRITIYQIRYLDKIPSFAAVNEAVEMSKKI 109
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
K +N VL R + K+
Sbjct: 110 SI-KYSKLVNGVLRNYIRTYKNKK 132
>gi|257417249|ref|ZP_05594243.1| fmu family protein [Enterococcus faecalis AR01/DG]
gi|307292139|ref|ZP_07572005.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|257159077|gb|EEU89037.1| fmu family protein [Enterococcus faecalis ARO1/DG]
gi|306496792|gb|EFM66343.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0411]
gi|315146584|gb|EFT90600.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4244]
Length = 459
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|218282376|ref|ZP_03488658.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
gi|218216662|gb|EEC90200.1| hypothetical protein EUBIFOR_01240 [Eubacterium biforme DSM 3989]
Length = 125
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R+ A+Q++YQ ++G + + + D + +
Sbjct: 2 NRHEQRVVAMQSVYQHLLLGKDIRKCVFDVMKGSNDID--------------GYLYSLTM 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G ++ K+ + I+ L + W F RL M+ +IL E++ P V+I+E + +A
Sbjct: 48 GTIENKEAFEQKINELLRDDWDFDRLSMLEQAILLISFQEILAND-TPKAVVINEAITLA 106
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ + K +N VLD++
Sbjct: 107 KKYCDDNSYKLLNGVLDQL 125
>gi|300858538|ref|YP_003783521.1| hypothetical protein cpfrc_01121 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685992|gb|ADK28914.1| hypothetical protein cpfrc_01121 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206250|gb|ADL10592.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
pseudotuberculosis C231]
gi|302330808|gb|ADL21002.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
pseudotuberculosis 1002]
gi|308276492|gb|ADO26391.1| Ribosomal RNA small subunit methyltransferase B [Corynebacterium
pseudotuberculosis I19]
Length = 504
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 26/181 (14%)
Query: 2 TIQDNKKDLKLSHRRGI------------ARLAAVQALYQIDIIGCSTTEIISEYETYRF 49
+ +N+ ++S RG AR A L+++ ++ +
Sbjct: 38 SQVNNRPGGRVSENRGRQGDFRKLSGVDIARSLAFHVLHRVSSEDAFANLVLPKLLN--- 94
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
++ D + + +G + +D L++ C + + L + LR
Sbjct: 95 --------KANVHGRDAAFATELTYGTLRTLGVLDTLLAECSSRG--LETIHPELLNALR 144
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
G +L+ P + V I + F N +L +SR + ++
Sbjct: 145 LGAYQLMYMRVEP-HAAVDTTVRIVEALGHDKAKGFANGILRTISRSTPAEWMERLAPQG 203
Query: 170 Q 170
+
Sbjct: 204 E 204
>gi|256832544|ref|YP_003161271.1| Fmu (Sun) domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256686075|gb|ACV08968.1| Fmu (Sun) domain protein [Jonesia denitrificans DSM 20603]
Length = 517
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 57/157 (36%), Gaps = 17/157 (10%)
Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
M ++ + S RR AR A + L Q+ ++
Sbjct: 41 MRQAGHRSQVAPSQRRSRSTTARQVAFEVLRQVADSDAYANLVLPPALRRA--------- 91
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D + + +G + + D +I++ T +D + LR GV +++
Sbjct: 92 --RLEGRDAGFATELAYGTLRMRGLYDAIIAAHTTR--PLEDIDSAVLDCLRLGVHQIVS 147
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +SE V +A D +FINAVL +S
Sbjct: 148 MR-VPAHAAVSETVGVARDNIGAGPAQFINAVLRSIS 183
>gi|332637334|ref|ZP_08416197.1| transcription antitermination protein NusB [Weissella cibaria KACC
11862]
Length = 140
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R R AA Q+++ + + + D E+ E +
Sbjct: 3 SLNRHQLRQAAFQSVFGLAMN---PDAQVEAVVQQVLDGDPEITWEDELPTD----LLDM 55
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++G++D + DL IS L + W+ RL++ ++R + E+ P ++ ++E +
Sbjct: 56 VNGIVDHQDEFDLTISEYLADGWTIDRLNLADVVLMRVAMYEVKYAE-TPAKIAVNEALQ 114
Query: 133 IAHDFFYGDEPKFINAVLDK 152
+AHDF KFIN +L+K
Sbjct: 115 LAHDFTDDASRKFINGILNK 134
>gi|307276657|ref|ZP_07557775.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
gi|306506767|gb|EFM75919.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX2134]
Length = 459
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|229547453|ref|ZP_04436178.1| RNA methyltransferase [Enterococcus faecalis TX1322]
gi|229307485|gb|EEN73472.1| RNA methyltransferase [Enterococcus faecalis TX1322]
Length = 459
Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|255325060|ref|ZP_05366166.1| transcription antitermination protein NusB [Corynebacterium
tuberculostearicum SK141]
gi|255297625|gb|EET76936.1| transcription antitermination protein NusB [Corynebacterium
tuberculostearicum SK141]
Length = 221
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 9/146 (6%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
LY+ + I+ + + + E+ +VI+ GV + ID
Sbjct: 27 DILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAID 79
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
IS L E W R+ + +ILR V EL+ +P + E V IA +
Sbjct: 80 DTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAP 139
Query: 145 FINAVLDKVSRKEEIKRSGCVSAITQ 170
+I+AVLD V++ + +SA Q
Sbjct: 140 YIHAVLDDVAQSRSAENP--MSAEHQ 163
>gi|311739520|ref|ZP_07713355.1| N utilization substance protein B [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305336|gb|EFQ81404.1| N utilization substance protein B [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 221
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 9/146 (6%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
LY+ + I+ + + + E+ +VI+ GV + ID
Sbjct: 27 DILYEAENRDVDPVAIVEDRIALA-------REDRNAVAPVAEYTQVIVKGVAEELDAID 79
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
IS L E W R+ + +ILR V EL+ +P + E V IA +
Sbjct: 80 DTISRFLAEDWELHRIPAVDRAILRLSVWELLFNPDIPTATAVVEGVEIASQYSNDQAAP 139
Query: 145 FINAVLDKVSRKEEIKRSGCVSAITQ 170
+I+AVLD V++ + +SA Q
Sbjct: 140 YIHAVLDDVAQSRSAENP--MSAEHQ 163
>gi|270293272|ref|ZP_06199483.1| sun protein [Streptococcus sp. M143]
gi|270279251|gb|EFA25097.1| sun protein [Streptococcus sp. M143]
Length = 437
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E + ++ Y A + S D I++G + RK ++ +S + ++
Sbjct: 16 EDVFIHQAYSNIALNKHLKGSRLSVADKGLVTEIVYGTVARKLTLEWYLSHFIEDRDKL- 74
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
D L +L +L VP +++E V +A K +NAVL ++ R+
Sbjct: 75 --DNWLYILLLLSAYQLRYLDKVPNHAVVNEAVELAKARK-KGSEKLVNAVLRRILRE 129
>gi|281413741|ref|ZP_06245483.1| transcription antitermination factor NusB [Micrococcus luteus NCTC
2665]
Length = 125
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ L++ + G + +E I + + ++ GV+ ++ +
Sbjct: 1 MEILFEAEQRGSTVSEGIRTRRESTDLQVN-------------AYTQRLVEGVIADQERL 47
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D +SS + WS R+ + +ILR G EL+ VP V ISE V +A D P
Sbjct: 48 DEALSSY-SRGWSLDRMPAVDRAILRVGAWELLFQDDVPDAVAISEAVALAAQLSTDDSP 106
Query: 144 KFINAVLDKVSR 155
+F+N +L ++ +
Sbjct: 107 EFVNGLLGRLQQ 118
>gi|256846520|ref|ZP_05551977.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_36A2]
gi|294784109|ref|ZP_06749410.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_27]
gi|256718289|gb|EEU31845.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_36A2]
gi|294488179|gb|EFG35524.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_27]
Length = 153
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ ++ ++ ++ ++E Y + + +
Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIY---LQNDEEFVAT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ +
Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E V +A ++ +F+N VL + + ++
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153
>gi|329767015|ref|ZP_08258543.1| ribosomal RNA small subunit methyltransferase B [Gemella
haemolysans M341]
gi|328837740|gb|EGF87365.1| ribosomal RNA small subunit methyltransferase B [Gemella
haemolysans M341]
Length = 441
Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + LY I Y + + D + +++G +
Sbjct: 5 NARQIAYEVLYTIIQEDG-----------YSNITLNKYFNQYKIQEQDKRFISEVVYGTI 53
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ ++ S + + IL + +L+ P II E V ++
Sbjct: 54 KNKIYLEHILKSYSKGRVKPK-----VKVILSMSIYQLLYMDKTPNFAIIDEAVKLSKKV 108
Query: 138 FYGDEPKFINAVLDKVSR 155
KF+N +L + R
Sbjct: 109 AGNITGKFVNGILRNIER 126
>gi|291557813|emb|CBL34930.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum V10Sc8a]
Length = 439
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L ++D G + I+ ++ D + + +GV++
Sbjct: 4 ARQITLDLLIRMDTQGAYSNIILDH-----------AFTQNDADRRDKAFSAALFYGVLE 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D LI ++ + ++ ILR G +L+ +SVP ++E V +
Sbjct: 53 RRMTLDYLIRYYSGIEFDKIKTAVVE--ILRMGFYQLLFMNSVPDSAAVNESVALCDYCN 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++NA+L R E+ G ++ +
Sbjct: 111 STKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142
>gi|260495022|ref|ZP_05815151.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_33]
gi|260197465|gb|EEW94983.1| transcription antitermination factor NusB [Fusobacterium sp.
3_1_33]
Length = 157
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ ++ S+ E+ + Y + + +
Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGAELTESSSDELKQGFSVY---LQNDEEFINA 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ + I+ +++ +I +I T+ W++ R+ +I S+L G E + +
Sbjct: 58 LSEKQLEFIKNSINRIVENYDNIKDVIKKN-TQNWTYERIGVIERSLLIVGTYEFLI-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E V +A ++ +FIN +L + + +
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFINGILANIEKAKN 153
>gi|256960468|ref|ZP_05564639.1| fmu [Enterococcus faecalis Merz96]
gi|293385126|ref|ZP_06630952.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|293389099|ref|ZP_06633571.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|312906690|ref|ZP_07765690.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|312910848|ref|ZP_07769684.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
gi|256950964|gb|EEU67596.1| fmu [Enterococcus faecalis Merz96]
gi|291077603|gb|EFE14967.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis R712]
gi|291081567|gb|EFE18530.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis S613]
gi|310627338|gb|EFQ10621.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 512]
gi|311288871|gb|EFQ67427.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis DAPTO 516]
Length = 459
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + R+D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA+ L +D Y E D + +G +
Sbjct: 14 RDAALSILLAVDKNQ-----------AYSNLLLNETIKRHKIEAKDRALLTELTYGTLQH 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + +D + +LR + ++ +P ++E V IA +
Sbjct: 63 KMTLDYYLEPFIRG-----SIDHWVRWLLRISLYQMQYLTRIPAHAAVNEAVEIAKRRGH 117
Query: 140 GDEPKFINAVLDKVSRK 156
+N +L V R+
Sbjct: 118 RGIASTVNGILRSVLRQ 134
>gi|189501850|ref|YP_001957567.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497291|gb|ACE05838.1| hypothetical protein Aasi_0422 [Candidatus Amoebophilus asiaticus
5a2]
Length = 378
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
E++ ++ +I +++++ ID LI + WS R ++ I+
Sbjct: 271 ELLVKEIEDAMQIGTNAASFYDKLIATALEQEKFIDNLIQQHIKN-WSIERTVLLDRIII 329
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ G+ E+ S+P +V I+EYV +A + KFIN VLD +++
Sbjct: 330 KMGLCEMKYFDSIPTKVAINEYVDLAKKYSTAKSSKFINGVLDTIAK 376
>gi|322377784|ref|ZP_08052273.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
M334]
gi|321281207|gb|EFX58218.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
M334]
Length = 437
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D I++G +
Sbjct: 7 ARSLALAGL-----------EDVFINQAYSNIALNKHLKGSQLSAADKGLVTEIVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|167750828|ref|ZP_02422955.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
gi|167656263|gb|EDS00393.1| hypothetical protein EUBSIR_01811 [Eubacterium siraeum DSM 15702]
Length = 439
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L ++D G + I+ ++ D + + +GV++
Sbjct: 4 ARQITLDLLIRMDTQGAYSNIILDH-----------AFTQNDADRRDKAFSAALFYGVLE 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D LI ++ + ++ ILR G +L+ +SVP ++E V +
Sbjct: 53 RRMTLDYLIRYYSGIEFDKIKTAVVE--ILRMGFYQLLFMNSVPDSAAVNESVALCDYCN 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++NA+L R E+ G ++ +
Sbjct: 111 STKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142
>gi|302874750|ref|YP_003843383.1| sun protein [Clostridium cellulovorans 743B]
gi|307690635|ref|ZP_07633081.1| sun protein [Clostridium cellulovorans 743B]
gi|302577607|gb|ADL51619.1| sun protein [Clostridium cellulovorans 743B]
Length = 443
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y + +S ++D I++G + K ID +I + S +D + +
Sbjct: 21 YSNIIINKELNKSNLENIDKALVTEIVYGTIQYKYTIDKIIDHFVGRGTS--SVDKKVVN 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
ILR+ + ++ +P +++E V ++ KFIN VL RK
Sbjct: 79 ILRSAIYQIRYLDKIPSFAVVNEAVELSKKLSTVTSSKFINGVLRNYIRKTNEN 132
>gi|195953014|ref|YP_002121304.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
gi|195932626|gb|ACG57326.1| NusB antitermination factor [Hydrogenobaculum sp. Y04AAS1]
Length = 139
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AR A ++LY DI G + I E + ++ +
Sbjct: 1 MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMS---------KPPLKKDSQKYTLL 51
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I + ++ID I+S L E W+ L I +ILR EL+ I +Y+
Sbjct: 52 ITKKFGENIENIDKKIASYL-ENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYI 110
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
IA ++ P FIN +L K+S+
Sbjct: 111 EIASNYGNKKTPSFINGILSKLSKDI 136
>gi|72161480|ref|YP_289137.1| RNA-binding Sun protein [Thermobifida fusca YX]
gi|71915212|gb|AAZ55114.1| putative RNA-binding Sun protein [Thermobifida fusca YX]
Length = 476
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 14/152 (9%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T + + + R AR A LY + ++ R
Sbjct: 12 TRRSPRGSASRTRPRDPARRVAYDVLYAVQTRDAYANLLLPVLLRER-----------GI 60
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + +G + + D ++ +C+ S +D + +LR G +L+ V
Sbjct: 61 TGRDAGLATELTYGTLRLQGSYDAVLDACVDR--SLRSVDTEVLPLLRMGAHQLLSMD-V 117
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P +S V +A +F+NAVL KV
Sbjct: 118 PPHAAVSSTVDLARRIVGHHRARFVNAVLRKV 149
>gi|42520134|ref|NP_966049.1| N utilization substance protein B, putative [Wolbachia endosymbiont
of Drosophila melanogaster]
gi|58698971|ref|ZP_00373826.1| transcription antitermination factor NusB [Wolbachia endosymbiont
of Drosophila ananassae]
gi|225630058|ref|YP_002726849.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
gi|42409871|gb|AAS13983.1| N utilization substance protein B, putative [Wolbachia endosymbiont
of Drosophila melanogaster]
gi|58534511|gb|EAL58655.1| transcription antitermination factor NusB [Wolbachia endosymbiont
of Drosophila ananassae]
gi|225592039|gb|ACN95058.1| N utilization substance protein B, putative [Wolbachia sp. wRi]
Length = 160
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 3/161 (1%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+++ D K +R AR AVQ Y +G + + +L
Sbjct: 1 MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVGYNKST-FKLENCELKDYINKLKDIFECE 59
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
+ ++ +++ V+ + D +I S L WS SRL++I SILR + EL C P
Sbjct: 60 EFEHQFLENLLYKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRVAICELANCD-TP 118
Query: 123 VEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
V V+I+EY IA D E FIN +LDK ++ ++
Sbjct: 119 VPVVINEYTNIASDLLDKPSEIGFINGLLDKAKDAVKLNKN 159
>gi|301063983|ref|ZP_07204448.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
gi|300441894|gb|EFK06194.1| ribosomal RNA small subunit methyltransferase B [delta
proteobacterium NaphS2]
Length = 447
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 12/139 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R A+++L + + + F + D + ++ GV+
Sbjct: 2 SRNLALKSLNSV----TNAPGGAERRLEFLFSKNPH------ISERDRAFAVHLVQGVLR 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D ++ ++ F ++D + ILR + ++I VP ++E V A
Sbjct: 52 WQIRLDWILKQY--VRFPFGKIDPEVLDILRLALFQIIFLDRVPDSAAVNEAVKQADKKG 109
Query: 139 YGDEPKFINAVLDKVSRKE 157
+F+N +L ++ R++
Sbjct: 110 RKHVARFVNGILRQICREK 128
>gi|255038668|ref|YP_003089289.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
gi|254951424|gb|ACT96124.1| NusB antitermination factor [Dyadobacter fermentans DSM 18053]
Length = 388
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
LY D + I T +L + D + + V+ D+
Sbjct: 242 LYWADHAELIRSLAIKTLRTADDAHTFQLAPLTKDWEEDRAFVEELCKIVIRESDQYDVY 301
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ L W R+ ++ IL+ + ELI +PV+V I+E++ IA + KF+
Sbjct: 302 LEDQLKN-WELERIALVDLIILKTALAELIHFPGIPVKVTINEFIEIAKRYSTPKSGKFV 360
Query: 147 NAVLD----KVSRKEEIKRSGC 164
N VLD K++++ I++SG
Sbjct: 361 NGVLDVLSVKLAKEGVIRKSGR 382
>gi|52840964|ref|YP_094763.1| transcription termination factor NusB [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52628075|gb|AAU26816.1| transcription termination factor NusB [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 123
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ G EI +++ T + VD E+F +++G+ + ++ + L
Sbjct: 1 MSGTDLHEIEAQFRT-----------INNMDKVDGEYFCRLLYGIPTHVEALEASLLPYL 49
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + L+ I ++LR G EL C +P +VI+ E V + +F + +++N VL+
Sbjct: 50 DRE--INALNPIELTVLRIGSFELFHCPEIPYKVILDESVSLTKEFGSQEGYRYVNGVLN 107
Query: 152 KVSRKEEIKR 161
++++
Sbjct: 108 NLAKQVRSVE 117
>gi|325954222|ref|YP_004237882.1| NusB antitermination factor [Weeksella virosa DSM 16922]
gi|323436840|gb|ADX67304.1| NusB antitermination factor [Weeksella virosa DSM 16922]
Length = 306
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D ++ + + + + I E W R+ + IL + E S
Sbjct: 195 KDEEDQKFAQDLFRLTVKHQSQNKEFIGQM-AENWELDRIAAVDLIILEMAITEFKHFPS 253
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P +V I+EY+ +A ++ F+N +LDK RK
Sbjct: 254 IPTKVTINEYIELAKNYSTEKSRIFVNGILDKALRKL 290
>gi|284041158|ref|YP_003391088.1| NusB antitermination factor [Spirosoma linguale DSM 74]
gi|283820451|gb|ADB42289.1| NusB antitermination factor [Spirosoma linguale DSM 74]
Length = 378
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+L+ + D + + ++ + L++ L W R+ MI IL+ V
Sbjct: 259 QLEPLTDDWEEDELFLNTLFEKSIENDADYEQLLADQLKN-WDVERVAMIDKIILKLAVC 317
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE----EIKRSGC 164
EL+ ++PV+V I+EY+ +A + KF+N +LD +S K +++SG
Sbjct: 318 ELLSFPNIPVKVTINEYIELAKAYSTPKSGKFVNGILDNLSEKLLASGRLRKSGR 372
>gi|291530595|emb|CBK96180.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
siraeum 70/3]
Length = 439
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 13/152 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR + L ++D G + I+ ++ D + + +GV++
Sbjct: 4 ARQITLDLLIRMDTQGAYSNIILDH-----------AFTQNDADRRDKAFSAALFYGVLE 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D LI ++ + ++ ILR G +L+ +SVP ++E V +
Sbjct: 53 RRMTLDYLIRYYSGIEFDKIKTAVVE--ILRMGFYQLLFMNSVPDSAAVNESVALCDYCN 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++NA+L R E+ G ++ +
Sbjct: 111 STKAKGYVNAILRTFLRNEKQIDYGNLTGEAK 142
>gi|34762362|ref|ZP_00143364.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887944|gb|EAA25010.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 153
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ ++ ++ ++ ++E Y + + +
Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIY---LQNDEEFVAT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ +
Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P+EVI +E V +A ++ +F+N VL + + ++
Sbjct: 116 IPIEVIANEIVELAKEYGNEKSYEFVNGVLANIEKSKK 153
>gi|312891647|ref|ZP_07751157.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
gi|311295831|gb|EFQ72990.1| NusB antitermination factor [Mucilaginibacter paludis DSM 18603]
Length = 315
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
+QAL S E + D E+ + + +
Sbjct: 177 VLQALIAKTFKNFSFEEAEKNKLAEVVVNWVD----------DREYIVSLFQHTIRYDEM 226
Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
I++ T+ W R+ M+ +++ + E + S+PV+V I+EY+ I+ +F
Sbjct: 227 FQEWITAK-TQNWEPERIAMMDTLLMKMAIAEFVYFPSIPVKVTINEYLEISKEFSTPKS 285
Query: 143 PKFINAVLDKVSRKEEIK 160
FIN +LDK+ + + +
Sbjct: 286 NSFINGILDKILFELKAE 303
>gi|296110622|ref|YP_003621003.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
gi|295832153|gb|ADG40034.1| rRNA methylase (putative) [Leuconostoc kimchii IMSNU 11154]
Length = 457
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 19/148 (12%)
Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R + R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLGEADKRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + + ++ + ++D + +L + ++ +P I +
Sbjct: 49 LTTLVYGVIQHRLTFEYWLTPFIGN----KKIDAWVRELLYTAMFQMEFLDKIPEHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + +A + KF+ A+L ++R+
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNIARQ 132
>gi|225574499|ref|ZP_03783109.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
10507]
gi|225038286|gb|EEG48532.1| hypothetical protein RUMHYD_02576 [Blautia hydrogenotrophica DSM
10507]
Length = 446
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G + +I E T + + + G ++
Sbjct: 4 RELILGILLAVNEEGEPSHRVIREVLT----------KHQFLPKQERAFITRVCEGTLEY 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +++ ++ ++ ILR+ V +L SVP + +E V +A +
Sbjct: 54 QITIDYILNHFSKV--KTDKMKPVIREILRSSVYQLKYMDSVPDSAVCNEAVKLAQKKGF 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+ F+N VL ++R+ E
Sbjct: 112 YNLKPFVNGVLRTIAREMEE 131
>gi|218439986|ref|YP_002378315.1| sun protein [Cyanothece sp. PCC 7424]
gi|218172714|gb|ACK71447.1| sun protein [Cyanothece sp. PCC 7424]
Length = 452
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 24/161 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++ R A+ L I + E Y A + +
Sbjct: 1 MTFKEKNP-----------RQLALIIL-----------RDIYQKEAYTDLALDQGIKRAD 38
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
++D +++G++ R++ +D +IS T+ ++ L IL G+ +L
Sbjct: 39 LGNLDRGLVTELVYGIVRRQRTLDEIISQLGTK--KANQQPPDLRLILHIGLYQLRYLDQ 96
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+P ++ V +A G +N +L + R +E +
Sbjct: 97 IPPSAAVNTSVELAKKNKLGKLSGVVNGILRQYDRIKEQGK 137
>gi|315604186|ref|ZP_07879252.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315313892|gb|EFU61943.1| ribosomal RNA small subunit methyltransferase B [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 490
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/168 (22%), Positives = 71/168 (42%), Gaps = 21/168 (12%)
Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
+S +R +A R A + L + + G I+ + A + +
Sbjct: 1 MSEKRYADGYRKLRLADEPRRVAYEVLRAVTVDGAFANIILPK-------ALRQARLHGH 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + ++HG + +D +I+ + S S+LD + +LR G +L++
Sbjct: 54 FSDRDAAFASELVHGTLRAMGWLDWVIARHVDR--SLSQLDPRVLVLLRVGAHQLLDMR- 110
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
VP +S V +A + +FINAVL ++R+ +R + AI
Sbjct: 111 VPDHAAVSATVDVAREHLTDGPVRFINAVLRSITREGPGEREAALEAI 158
>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 435
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L E I + + Y E+ + D +++G + R
Sbjct: 5 RALAFETL-----------EAIFQDKAYSNLKLNEVLKANELSRADKNLLTELVYGTIKR 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ++ + + + + +L + + VP II+E V IA
Sbjct: 54 KITLEYYLKPFVQTRIK-----GWMRHLLWMSIYQYQYLDKVPDHAIINEAVEIAKVRGG 108
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
K +N +L + R + + Q
Sbjct: 109 LHNSKVVNGILRNMMRS-NLPNPADIKDDKQ 138
>gi|289168457|ref|YP_003446726.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
gi|288908024|emb|CBJ22864.1| rRNA-specific 5-methylcytidine transferase [Streptococcus mitis B6]
Length = 438
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 8 ARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTVA 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L + +P +++E V +A
Sbjct: 57 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVRK 113
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 114 -KGSEKLVNAVLRRILRE 130
>gi|158313539|ref|YP_001506047.1| NusB antitermination factor [Frankia sp. EAN1pec]
gi|158108944|gb|ABW11141.1| NusB antitermination factor [Frankia sp. EAN1pec]
Length = 135
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
++ ++ GV+ ID I+ + W+ R+ + +ILR VLEL V
Sbjct: 18 DPPVPDYTSDLVEGVVAHLAEIDAHIARF-AQGWTLDRMPPVDRNILRIAVLELFWRSDV 76
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P V+I E V +A P F+N +L + +++ +
Sbjct: 77 PDRVVIDEAVRLAKTISTERSPAFVNGLLASLLKEKPVPE 116
>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
Length = 444
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 15/147 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++++ AR AV L +ID ++ + S + +D
Sbjct: 1 MTNQNNSARNLAVDILEKIDEG------------SFSNIQLNQDIKSSSLIDIDKNLLTE 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ + +D ++ + + ++LR V ++ VP I +E +
Sbjct: 49 IVYGVLQHRLTLDFYLADYI---RKPEMTPRWVINLLRTAVFQMEFLDRVPDFAIFNESI 105
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
IA K + VL R +
Sbjct: 106 EIAKLRGNDGIRKMVTGVLRSYQRNGK 132
>gi|229013049|ref|ZP_04170214.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
gi|228748303|gb|EEL98163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
DSM 2048]
Length = 415
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ ++ D+ +++G + R+ +D + L +++ + +LR + +
Sbjct: 1 MIEKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQ 55
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++ VP I E V IA + +N VL + R+
Sbjct: 56 MLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97
>gi|229061468|ref|ZP_04198813.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
gi|229134673|ref|ZP_04263482.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|229168605|ref|ZP_04296328.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228615011|gb|EEK72113.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH621]
gi|228648719|gb|EEL04745.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BDRD-ST196]
gi|228717891|gb|EEL69539.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH603]
Length = 415
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ ++ D+ +++G + R+ +D + L +++ + +LR + +
Sbjct: 1 MIEKNTIDRKDIGLLTEMVYGTIQRRDTLDYYLQPFLR-----KKVEAWVRVLLRLSLYQ 55
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++ VP I E V IA + +N VL + R+
Sbjct: 56 MLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 97
>gi|313897409|ref|ZP_07830952.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
gi|312957779|gb|EFR39404.1| transcription antitermination factor NusB [Clostridium sp. HGF2]
Length = 125
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R A+ +LYQ ++ E + ++ + + +
Sbjct: 1 MNSRHKLRELAMTSLYQHFLLQKDIKECVY---------------DNSETNEIDPFLYTV 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + I++ L + W+F+RL + +IL EL + P ++I E V
Sbjct: 46 TIDAIRYQDVYIDKINAALRQDWTFARLGFVEQAILMMAACELD-LETAPKAIVIDEAVT 104
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + + + IN VLD++
Sbjct: 105 LAKKYCDDETYRLINGVLDRL 125
>gi|295100829|emb|CBK98374.1| transcription antitermination factor NusB [Faecalibacterium
prausnitzii L2-6]
Length = 144
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A + E + + E H + + ++
Sbjct: 6 PRREARENAFLLAFSQTFGDIPLQEAL------------DNHHECDEEHPVDVFGQRLLR 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ +D LIS+ L W+ RL + ++LR G+ E++ V+I+E V +
Sbjct: 54 AYYEHSAEVDDLISAHL-RNWTMERLPRVSLTVLRLGLAEMLYGDEKKPGVVINEAVELT 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ ++ +F+N +L V+R++
Sbjct: 113 KKYGADEDYQFVNGLLGTVAREQ 135
>gi|300784671|ref|YP_003764962.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
mediterranei U32]
gi|299794185|gb|ADJ44560.1| ribosomal RNA small subunit methyltransferase B [Amycolatopsis
mediterranei U32]
Length = 474
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 28/181 (15%)
Query: 1 MTIQDNKKDLKLSHRRGI--------------ARLAAVQALYQIDIIGCSTTEIISEYET 46
M ++ + R AR AA L + +
Sbjct: 1 MNDHRERRPSRPQRGRPAPRKEGPRRPPEVDPARQAAFDVL-----------AAVRTKDA 49
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y +L E D + +G + +D +I SC + + D +
Sbjct: 50 YANLVLPDLLRERRITGRDAALATELTYGTSRAQGLLDAIIESC--AERPLKQTDPAVLD 107
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
LR GV +L+ +P ++ V + F NA+L KVS K+E ++
Sbjct: 108 ALRLGVYQLL-RTRIPEHAAVTSTVDLVRAEAGSWATGFANAILRKVSEKDETTWLDELA 166
Query: 167 A 167
Sbjct: 167 P 167
>gi|312869942|ref|ZP_07730081.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
gi|311094527|gb|EFQ52832.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus oris
PB013-T2-3]
Length = 449
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ + AR A+ AL + I Y +L + D
Sbjct: 2 MTKQDMTAREVALTAL-----------DRIRRQGAYSNLQLNQLLSKHHLNDSDRRLATR 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++G + + ++ + + RLD + ++L + + VP + E +
Sbjct: 51 IVYGTLQHQLTLEYWLQPFVKG----KRLDSWVETLLLTALYQYHYLERVPDWAVTDETI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+ VL V R+
Sbjct: 107 EIAKHWGNPGIRKFVTGVLHAVLRR 131
>gi|238916656|ref|YP_002930173.1| Sun protein [Eubacterium eligens ATCC 27750]
gi|238872016|gb|ACR71726.1| Sun protein [Eubacterium eligens ATCC 27750]
Length = 434
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 49/139 (35%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++I E + L + + G ++
Sbjct: 8 RAVVLDIL--MEINEKG--------EFSHLLINNALTKYQYLDKNKRAFISRLSLGTIEN 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I ++ ++ +I V ++I ++P + +E V +A +
Sbjct: 58 RIELDYIIDQYSKT--PVRKMKPLIRNICEMSVYQIIYMDNIPDSAVCNEAVKLATKRGF 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL ++R ++
Sbjct: 116 TGLKGFVNGVLRNIARNKD 134
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ +S D+ I++G + R+ +D + L +++ + +LR + +
Sbjct: 1 MIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQ 55
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++ VP I E V IA + +N VL + R+
Sbjct: 56 MLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97
>gi|168483273|ref|ZP_02708225.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC1873-00]
gi|172043312|gb|EDT51358.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae CDC1873-00]
Length = 437
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLSAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L + +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 112 KKGSEKLVNAVLRRILRE 129
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ +S D+ I++G + R+ +D + L +++ + +LR + +
Sbjct: 1 MIEKSAIDRKDIGLLTEIVYGTIQRRDTLDYYLQPFLR-----KKVEAWVKILLRLSLYQ 55
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++ VP I E V IA + +N VL + R+
Sbjct: 56 MLYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 97
>gi|28210910|ref|NP_781854.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
gi|28203349|gb|AAO35791.1| 16S rRNA M(5)C 967 methyltransferase [Clostridium tetani E88]
Length = 454
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 18/156 (11%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
N+++L + R A++ L + + Y A +
Sbjct: 6 KNRRNLYMVTD----RKVAIEVL-----------DAVFLKNAYSNIALNNALNKYKLNEK 50
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + +++G + + ID +++S + + +D + +ILR G+ +L VP
Sbjct: 51 DKAFITELVYGTIKYRHTIDTILNSYIKKG--IKSVDKYVLNILRIGIYQLRYLDKVPSF 108
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++E V + K IN VL R ++ K
Sbjct: 109 AAVNECVELGKVKS-KGTGKLINGVLRNYIRNKDPK 143
>gi|237741349|ref|ZP_04571830.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
gi|229430881|gb|EEO41093.1| N utilization substance protein B [Fusobacterium sp. 4_1_13]
Length = 153
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 74/158 (46%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ ++ ++ ++ ++E Y + + +
Sbjct: 1 MNKNFEEQEKKAKGGIRLAREEVFKLVFGTEVTESTSDKLKQDFEIY---LQNDEEFVAT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ R I+G+ + I +I T+ W++ R+ ++ ++L E++ +
Sbjct: 58 LNENQLEFIRDSINGIAKNYEDIKDIIKKN-TKNWAYERIGIVERALLIVATYEILF-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E V +A ++ +F+N +L + + ++
Sbjct: 116 TPIEVIANEIVELAKEYGNEKSYEFVNGILANIEKSKK 153
>gi|116618607|ref|YP_818978.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116097454|gb|ABJ62605.1| tRNA and rRNA cytosine-C5-methylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 448
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 19/148 (12%)
Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R + R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + + + + ++D + +L + ++ +P I +
Sbjct: 49 LTTLVYGVIQHRLTFEYWLEPFVGS----KKIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + +A + KF+ A+L +SRK
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132
>gi|260062175|ref|YP_003195255.1| NusB family protein [Robiginitalea biformata HTCC2501]
gi|88783737|gb|EAR14908.1| NusB family protein [Robiginitalea biformata HTCC2501]
Length = 366
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D+E+ ++ +++ ++ I T W R+ I +L+ G+ EL+ S+P
Sbjct: 260 EDMEFAMDLLRKTLNKNAALEAEI-EGKTPNWDKERIAEIDGILLKMGIAELLYFPSIPE 318
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V I+EY+ IA ++ FIN +LDK+ R+ +G + +
Sbjct: 319 RVTINEYLEIAKEYSTPKSSIFINGILDKLIREYR--EAGRLKKTGR 363
>gi|170016869|ref|YP_001727788.1| putative rRNA methylase [Leuconostoc citreum KM20]
gi|169803726|gb|ACA82344.1| Putative rRNA methylase [Leuconostoc citreum KM20]
Length = 450
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 19/148 (12%)
Query: 12 LSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSNNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKKHALNDSDKRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + D + T +++ + +L + +L +P I +
Sbjct: 49 LTTLVYGVIQHRLTFDYWL----TPFIKQKKIEPWVRELLYTALFQLQYLDKIPQHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + +A + KF+ A+L +SR+
Sbjct: 105 ESIEVAKTLGHIGTAKFVTAILHNISRQ 132
>gi|167747003|ref|ZP_02419130.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
gi|317471818|ref|ZP_07931155.1| transcription antitermination factor NusB [Anaerostipes sp.
3_2_56FAA]
gi|167653963|gb|EDR98092.1| hypothetical protein ANACAC_01715 [Anaerostipes caccae DSM 14662]
gi|316900709|gb|EFV22686.1| transcription antitermination factor NusB [Anaerostipes sp.
3_2_56FAA]
Length = 131
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 10/138 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + + ID E + AD + + + ++ +
Sbjct: 3 RSKLREQMFRLCFSIDFHTS---------EEFEAQADLYFSNNDFFRNKEKDYIKTRTLD 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++ R + ID I+ ++ W RL +ILR V E++ +P +V I+E V ++
Sbjct: 54 MLSRLEEIDQKINEN-SKGWDIKRLGKAELTILRIAVYEIMFDEDIPDKVAINEAVELSK 112
Query: 136 DFFYGDEPKFINAVLDKV 153
+ FIN +L K+
Sbjct: 113 TYCNEKAASFINGILGKI 130
>gi|329770465|ref|ZP_08261844.1| transcription antitermination factor NusB [Gemella sanguinis M325]
gi|328836320|gb|EGF85986.1| transcription antitermination factor NusB [Gemella sanguinis M325]
Length = 131
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + L+Q++ E++ ++ +
Sbjct: 1 MKSRHELRESVFKILFQVENTDLDYRELLEFEVDDVSGSE---------------YVTRT 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + +K+ ID +IS+ L W RL + ILR E++ +P +V I+E V
Sbjct: 46 LDDIFAKKEQIDEIISNNLKG-WKLERLSKMDRQILRISTYEILFTD-IPYKVSINEAVE 103
Query: 133 IAHDFF-YGDEPKFINAVLDKVS 154
++ + D KFIN VL +
Sbjct: 104 LSKKYSEKDDSYKFINGVLKGIV 126
>gi|255282547|ref|ZP_05347102.1| ribosomal RNA small subunit methyltransferase B [Bryantella
formatexigens DSM 14469]
gi|255266840|gb|EET60045.1| ribosomal RNA small subunit methyltransferase B [Bryantella
formatexigens DSM 14469]
Length = 453
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 12/136 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + AL I ++ + D + + G M+
Sbjct: 10 REIILGALMAITEEEQYCHIVLRDVLAKY----------QYLEKRDRAFISRTVEGTMEN 59
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID ++ T + + +ILR + ++ VP +++E V + +
Sbjct: 60 MIQIDYILEQFSTV--KVQNMKPAIRNILRMSIYQMQYMDGVPHAAVVNEAVKLTQKKGF 117
Query: 140 GDEPKFINAVLDKVSR 155
F+N VL R
Sbjct: 118 YTLKGFVNGVLRAAER 133
>gi|227431998|ref|ZP_03914018.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352283|gb|EEJ42489.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 448
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 19/148 (12%)
Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R + R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHKLGEADTRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + + + + ++D + +L + ++ +P I +
Sbjct: 49 LTTLVYGVIQHRLTFEYWLEPFVGS----KKIDPWVRELLYTAIFQMEYLDKIPQHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + +A + KF+ A+L +SRK
Sbjct: 105 ESIEVAKILGHVGTGKFVTAILHNISRK 132
>gi|257452280|ref|ZP_05617579.1| transcription antitermination protein NusB [Fusobacterium sp.
3_1_5R]
Length = 138
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++ R AR + ++Q +I G S E + L E V +
Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSVEEAFEH---------SFLREEIEKDEVSKVFL 51
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
G+++ ++ + I + +T+ W R+ + S+L+ V E+ +PVE+I++E
Sbjct: 52 ERYRKGMVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYEIYFED-LPVEIIVNE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V IA + +FIN VL KV + ++
Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKK 138
>gi|257465920|ref|ZP_05630231.1| transcription antitermination protein NusB [Fusobacterium
gonidiaformans ATCC 25563]
gi|315917076|ref|ZP_07913316.1| transcription antitermination protein NusB [Fusobacterium
gonidiaformans ATCC 25563]
gi|317058823|ref|ZP_07923308.1| transcription antitermination protein NusB [Fusobacterium sp.
3_1_5R]
gi|313684499|gb|EFS21334.1| transcription antitermination protein NusB [Fusobacterium sp.
3_1_5R]
gi|313690951|gb|EFS27786.1| transcription antitermination protein NusB [Fusobacterium
gonidiaformans ATCC 25563]
Length = 134
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR + ++Q +I G S E + L E V + G
Sbjct: 3 RREAREELFKWIFQTEIQGNSVEEAFEH---------SFLREEIEKDEVSKVFLERYRKG 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ ++ + I + +T+ W R+ + S+L+ V E+ +PVE+I++E V IA
Sbjct: 54 MVEHQEEVAEKIEAAMTD-WDLPRIGYVEKSLLKIAVYEIYFED-LPVEIIVNEAVEIAK 111
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ +FIN VL KV + ++
Sbjct: 112 IYGDVKTHEFINGVLAKVIKMKK 134
>gi|188588047|ref|YP_001920563.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|251779411|ref|ZP_04822331.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188498328|gb|ACD51464.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E3 str. Alaska E43]
gi|243083726|gb|EES49616.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 438
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L ++ G + I+S E+ D I++GV+ R
Sbjct: 4 RNLAVKILKRVIDEGAYSNIILSNELN-----------EANLEERDKALLTEIVYGVLRR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K+ +DL+I++ +D + +ILR + ++ VP +E V A
Sbjct: 53 KKTLDLIIANF---VRDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ K +N +L S+ +
Sbjct: 109 PEAGKLVNGILRNFSKDPD 127
>gi|260903826|ref|ZP_05912148.1| NusB antitermination factor [Brevibacterium linens BL2]
Length = 121
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 43 EYETYRFCADTELDVESVYLHVD---LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+E + DTE V D + I+ G+ ++ ID +I + E W+ R
Sbjct: 1 MFEAGQRRLDTEQIVTMRSNDPDYPMKAYAVEIVEGITSHREEIDEII-ATYAEGWTLER 59
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ + ++L+ G E+I VP + I E V +A F D P FI+ +L +V
Sbjct: 60 MPAVDLALLQIGTWEIIFNDEVPDKAAIDEAVSLARQFSTDDSPGFISGLLSRVL 114
>gi|229826167|ref|ZP_04452236.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
49176]
gi|229789037|gb|EEP25151.1| hypothetical protein GCWU000182_01539 [Abiotrophia defectiva ATCC
49176]
Length = 455
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + G +++ ++D +I+S +L I+ ++ V ++
Sbjct: 36 LDKASRGFITRLYEGSIEKMIYLDFVINSFSKT--PVKKLKPIIKILMETAVYQIFFMDR 93
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VP I+E V +A F+N VL ++R E
Sbjct: 94 VPDSAAINEAVKLAKKRGLAGLSGFVNGVLRNIARNRE 131
>gi|150016032|ref|YP_001308286.1| sun protein [Clostridium beijerinckii NCIMB 8052]
gi|149902497|gb|ABR33330.1| sun protein [Clostridium beijerinckii NCIMB 8052]
Length = 439
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 15/142 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L ++ G + ++++ E+ D I++GV+ R
Sbjct: 4 RKLAVKILGRVLNEGAYSNIVLAKELN-----------EAELSDKDKALLTEIVYGVLRR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K+ +D++IS+ + ++ + +ILR + ++ +P +E V A +
Sbjct: 53 KKTLDIIISNFVK---DLKLMNKDILNILRVAIYQMNFLDKIPSYAACNEAVEEAKEISE 109
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
D K +N +L ++ +
Sbjct: 110 NDS-KLVNGILRNFTKNPDDIE 130
>gi|225018827|ref|ZP_03708019.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
DSM 5476]
gi|224948387|gb|EEG29596.1| hypothetical protein CLOSTMETH_02777 [Clostridium methylpentosum
DSM 5476]
Length = 132
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R A +++ +E+I A E E + F
Sbjct: 2 KRHQMRENAFILVFEKIFNDDDVSEVI---------AAAEECGEFEVNSDVIALFT---- 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV +D LIS LT+ W+ +RL ++ +ILR V E++ V + I+E V +A
Sbjct: 49 GVQQHISELDRLISEHLTK-WNITRLSKVILAILRLAVYEIVYVERVEAPIAINEAVELA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
++ ++ F+N VL R E
Sbjct: 108 KEYATQEDAAFVNGVLGSFVRAAE 131
>gi|172040659|ref|YP_001800373.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
urealyticum DSM 7109]
gi|171851963|emb|CAQ04939.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
urealyticum DSM 7109]
Length = 513
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 19/169 (11%)
Query: 4 QDNKKDLKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
Q + + + R AR AA L Q+ +E + Y A + E
Sbjct: 40 QQRRPEHRQEKSRRAGTGDKARDAAFAVLRQV-----------TEEDAYGNLALPAVLRE 88
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + +G + +D +I+ +++D + LR G +L+
Sbjct: 89 RGISGRDANFATELTYGTLRATGLLDAIIAK--AAGRPVAKIDSVALDALRIGAYQLLRT 146
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P + V + G F+N VL +SR + V+
Sbjct: 147 RVEP-HAAVDTSVELVKANGGGKASGFVNGVLRTISRSTPEQWLDRVAP 194
>gi|163755270|ref|ZP_02162390.1| putative N utilization substance protein [Kordia algicida OT-1]
gi|161324690|gb|EDP96019.1| putative N utilization substance protein [Kordia algicida OT-1]
Length = 302
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
I+ + + + E D + R + + + + I T W R
Sbjct: 172 ILKSIKQAKPGKERIFLSELYKDDEDKVFVRDLFRKTVLNDEMLTAEI-QGKTPNWDKDR 230
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ + +L+ + EL++ S+P +V I+EY+ +A ++ F+N +LDK+ ++ +
Sbjct: 231 IANLDLILLKMAICELLKFPSIPAKVTINEYIELAKEYSTSKSSMFVNGILDKLIKEYKK 290
Query: 160 KR 161
+
Sbjct: 291 EN 292
>gi|307704312|ref|ZP_07641230.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK597]
gi|307622148|gb|EFO01167.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK597]
Length = 437
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFINQAYSNIALNKHLKGSQLSVADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L + +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLNKIPDHAVVNEAVELAKVRK 112
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NAVL ++ R+
Sbjct: 113 -KGSEKLVNAVLRRILRE 129
>gi|256958399|ref|ZP_05562570.1| fmu family protein [Enterococcus faecalis DS5]
gi|257078290|ref|ZP_05572651.1| fmu [Enterococcus faecalis JH1]
gi|294779981|ref|ZP_06745361.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|307270563|ref|ZP_07551861.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|256948895|gb|EEU65527.1| fmu family protein [Enterococcus faecalis DS5]
gi|256986320|gb|EEU73622.1| fmu [Enterococcus faecalis JH1]
gi|294452962|gb|EFG21384.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis PC1.1]
gi|306513144|gb|EFM81778.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX4248]
gi|315034823|gb|EFT46755.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX0027]
Length = 459
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
I KF+N VL R
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRN 136
>gi|326407382|gb|ADZ64453.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
subsp. lactis CV56]
Length = 424
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L DI G Y + +S VD + +++GV
Sbjct: 3 KNARQTALDVL--NDIFGNDA---------YANISLDRNLRDSELSTVDKAFVTALVYGV 51
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K ++ I+ L ++ +L V +++ VP + E V IA
Sbjct: 52 VSKKDLLEWHITPFLKKEPK-----PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKR 106
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRS 162
FINAVL R + +
Sbjct: 107 RDGQATANFINAVLRNFMRSEHRNEEP 133
>gi|326329789|ref|ZP_08196109.1| transcription antitermination factor NusB [Nocardioidaceae
bacterium Broad-1]
gi|325952375|gb|EGD44395.1| transcription antitermination factor NusB [Nocardioidaceae
bacterium Broad-1]
Length = 137
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A+ L+ + G S +++ + + + I+ G
Sbjct: 8 RTKARKRALDLLFAAEARGLSAGDLLDQQIREGEV-------------PNNPFTVKIVRG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ + ID LI S + W+ +R+ + ++LR GV EL++ V ISE +
Sbjct: 55 VVAEAERIDALI-SAFAKDWTLARMPAVDRNVLRIGVWELLDGDVASE-VAISEATALVT 112
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
+ D P F+N VL V++
Sbjct: 113 ELSTDDSPSFVNGVLAAVAKDL 134
>gi|327462453|gb|EGF08778.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1057]
Length = 438
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L E+ E Y A +S D
Sbjct: 1 MESKQKTARWQALEIL----------EEVFEER-AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P ++ E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DSWLYILLMISLYQMLYLDKIPQHAVVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA +G E KF+NA+L ++ R+
Sbjct: 107 EIAKIRKHGSE-KFVNALLRRIERE 130
>gi|281492501|ref|YP_003354481.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
lactis KF147]
gi|281376165|gb|ADA65656.1| 16S rRNA m(5)C 967 methyltransferase [Lactococcus lactis subsp.
lactis KF147]
Length = 424
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L DI G Y + +S VD + +++GV
Sbjct: 3 KNARQTALDVL--NDIFGNDA---------YANISLDRNLRDSELSTVDKAFVTALVYGV 51
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K ++ I+ L ++ +L V +++ VP + E V IA
Sbjct: 52 VSKKDLLEWHITPFLKKEPK-----PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKR 106
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRS 162
FINAVL R + +
Sbjct: 107 RDGQATANFINAVLRNFMRSEHRNEEP 133
>gi|225021364|ref|ZP_03710556.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
ATCC 33806]
gi|305681148|ref|ZP_07403955.1| putative ribosomal RNA small subunit methyltransferase B
[Corynebacterium matruchotii ATCC 14266]
gi|224945746|gb|EEG26955.1| hypothetical protein CORMATOL_01383 [Corynebacterium matruchotii
ATCC 33806]
gi|305659353|gb|EFM48853.1| putative ribosomal RNA small subunit methyltransferase B
[Corynebacterium matruchotii ATCC 14266]
Length = 491
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+AR A LY++++ G TY A + E D + I +G +
Sbjct: 49 LARAVAFDVLYRVNVEG-----------TYANLALPKALTEYRLKRRDAAFATEITYGTL 97
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D++I+ C + +D + +R G +L+ P + V I
Sbjct: 98 RVQGILDIVIAHCSSR--PLDSIDPAVLGAIRLGAYQLLYTRVEP-HAAVDSAVKIVAAT 154
Query: 138 FYGDEPKFINAVLDKVSR 155
F N +L K+SR
Sbjct: 155 GNEQAKGFANGILRKISR 172
>gi|15673871|ref|NP_268046.1| rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
gi|12724923|gb|AAK05987.1|AE006418_7 rRNA methylase [Lactococcus lactis subsp. lactis Il1403]
Length = 424
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L DI G Y + +S VD + +++GV
Sbjct: 3 KNARQTALDVL--NDIFGNDA---------YANISLDRNLRDSELSTVDKAFVTALVYGV 51
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K ++ I+ L ++ +L V +++ VP + E V IA
Sbjct: 52 VSKKDLLEWHITPFLKKEPK-----PWAKMLLLLTVYQILFMDKVPTSAAVDEAVKIAKR 106
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRS 162
FINAVL R + +
Sbjct: 107 RDGQATANFINAVLRNFMRSEHRNEEP 133
>gi|154485073|ref|ZP_02027521.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
27560]
gi|149734026|gb|EDM50145.1| hypothetical protein EUBVEN_02796 [Eubacterium ventriosum ATCC
27560]
Length = 448
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + G ++R+ ID +I+ +++ ++ ILR GV ++ +
Sbjct: 43 LDKHQRSFITRLFQGTLERRIEIDFIINQFSKT--PVNKMKPVIREILRMGVYQIKYMDN 100
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VPV + +E V +A + + F+N VL ++R E
Sbjct: 101 VPVSAVCNEGVKLAEKRKFRNLKGFVNGVLRNIARNIEKIE 141
>gi|257055599|ref|YP_003133431.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
43017]
gi|256585471|gb|ACU96604.1| tRNA/rRNA cytosine-C5-methylase [Saccharomonospora viridis DSM
43017]
Length = 484
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
K+ + R AR AA AL ++E + Y EL +
Sbjct: 25 PRKQGPRRPPTRDPARRAAFDAL-----------RAVTERDAYANLILPELLRQRRITGR 73
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + +G +D +++ C+ +D ++ LR G +L+ +P
Sbjct: 74 DAALATELTYGTARATGLLDAIVARCVDR--KLDTVDPVVRDALRLGAYQLL-RTRIPHH 130
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
++ V + + F+NAVL +VS K+E + ++A +
Sbjct: 131 AAVASTVDLVREDAGSRVAGFVNAVLRRVSEKDEQQWLAELTADS 175
>gi|210622490|ref|ZP_03293195.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
gi|210154203|gb|EEA85209.1| hypothetical protein CLOHIR_01143 [Clostridium hiranonis DSM 13275]
Length = 173
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 25/164 (15%)
Query: 19 ARLAAVQALYQIDIIGCSTTE---------------IISEYETYRFCADTELDVESVYLH 63
+R ++ +Y +D++ ++ I++ +E + + + DV
Sbjct: 11 SREYMMKFIYNLDVVKDDLSDLENKVKEFLVGNEEYIVNRFEELKLQSSNDSDVHESMET 70
Query: 64 V---------DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+L++ + ++ + ID I + WS + + +ILR + E
Sbjct: 71 EEEIDLENYLNLDYVSNVCKIYEEKHEEIDEAIDKY-AKGWSIMTMPKVDVAILRLAIAE 129
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ S+P +V I+E + +A + PKFIN VL +
Sbjct: 130 IGFIDSIPEKVSINEAIEMAKMYCDDKSPKFINGVLGSYLNDRK 173
>gi|15605713|ref|NP_213090.1| transcription antitermination protein NusB [Aquifex aeolicus VF5]
gi|7387972|sp|O66530|NUSB_AQUAE RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|168177029|pdb|2JR0|A Chain A, Solution Structure Of Nusb From Aquifex Aeolicus
gi|2982871|gb|AAC06491.1| transcription termination NusB [Aquifex aeolicus VF5]
Length = 148
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A LY+ D+ G + E+ E + + + + + +
Sbjct: 1 MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYE----------YAKKL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + + ID +I L WS RL + + LR GV ELI S + + V
Sbjct: 51 VDTAVRHIEEIDSIIEKHLKG-WSIDRLGYVERNALRLGVAELIFLKSKEPGRVFIDIVD 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+ + KF+N VL + +
Sbjct: 110 LVKKYADEKAGKFVNGVLSAIYK 132
>gi|332799419|ref|YP_004460918.1| sun protein [Tepidanaerobacter sp. Re1]
gi|332697154|gb|AEE91611.1| sun protein [Tepidanaerobacter sp. Re1]
Length = 448
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+ L I E + S D +++GV
Sbjct: 2 SNPRELAICML-------------IKIQEGSYGNLLLNQHLTSDMSLKDRALVTELVNGV 48
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ID +IS S++ + + +R G+ + VP ++E V +
Sbjct: 49 VQNLLRIDYIISQFSKI--DLSKISPFVKNAIRVGIYQTFFLDRVPDFAAVNESVSLVKK 106
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+ F NA+L V RK +
Sbjct: 107 YEGKRAANFTNAILRNVLRKRD 128
>gi|326790876|ref|YP_004308697.1| sun protein [Clostridium lentocellum DSM 5427]
gi|326541640|gb|ADZ83499.1| sun protein [Clostridium lentocellum DSM 5427]
Length = 445
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R V L +I+ ++ D + +++G +
Sbjct: 6 REQIVDLLIEIEKEASYAQLVLKRALQ-------------DIDAKDKGFVTEVVYGTLKY 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++ R+ ++ +++R + +++ VP II+E V I +
Sbjct: 53 QIKLDYILNQFSKT--PVHRMKPLIRNVMRMSLYQMLYLDKVPTSAIINEAVKIVKKRKF 110
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ F+N +L + R+ E
Sbjct: 111 QNLSGFVNGLLRNIDRQRE 129
>gi|119716670|ref|YP_923635.1| Fmu (Sun) domain-containing protein [Nocardioides sp. JS614]
gi|119537331|gb|ABL81948.1| Fmu (Sun) domain protein [Nocardioides sp. JS614]
Length = 472
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARLAA+ + + Y + + D + ++ G +
Sbjct: 32 ARLAAL-----------DVMKAVRVDGAYTNLVLPSVLRQHGLSGRDAAFVTELVSGTIR 80
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ D ++++C+ S+++ + LR G +L+ VPV IS V +
Sbjct: 81 RRGTYDAILAACVDR--PLSKVEAKVLDALRLGTHQLLSMR-VPVHAAISTTVDLVRAKV 137
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F NAVL +V+R+E + V+
Sbjct: 138 SSGAGGFANAVLRQVARQELTEWIARVAP 166
>gi|81299771|ref|YP_399979.1| sun protein [Synechococcus elongatus PCC 7942]
gi|81168652|gb|ABB56992.1| sun protein [Synechococcus elongatus PCC 7942]
Length = 451
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 14/151 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
RG AR A Q L + E + A S + D
Sbjct: 2 PRPSRGNARWVAFQTL-------TTIRE-----GAFADLALDRHLQRSGLVGADRRLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + R++ +D LI L + ++ +L ++L+ G+ +L +P ++E V
Sbjct: 50 LVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVAETV 107
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+A G +NA+L + R+ E +
Sbjct: 108 QLAKQLGLGGLSGAVNAILRQYLRQSEERDP 138
>gi|329576774|gb|EGG58267.1| putative ribosomal RNA small subunit methyltransferase B
[Enterococcus faecalis TX1467]
Length = 340
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 14/145 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQKVDNWVRNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
I KF+N VL R
Sbjct: 112 EIGKRRGNPGIGKFVNGVLRAFQRN 136
>gi|315172961|gb|EFU16978.1| ribosomal RNA small subunit methyltransferase B [Enterococcus
faecalis TX1346]
Length = 459
Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R A++ + ++D G Y E+ +S D F
Sbjct: 6 PKKLKRSVRYVALETIERVDKGG-----------AYSNLLLNEMMTKSELSEKDGRLFTE 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + R+D + ++L + +L+ VP +I+E V
Sbjct: 55 LVYGTISRKLLLEYYLTPFVK---KPQRVDNWVKNLLILSLYQLLYLDKVPDHAVINEAV 111
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
I KF+N VL R + +
Sbjct: 112 EIGKRRGNTGIGKFVNGVLRAFQRNGAPSLAAISDPV 148
>gi|187933697|ref|YP_001885416.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
gi|187721850|gb|ACD23071.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum B str. Eklund 17B]
Length = 438
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L ++ G + I+S E+ D I++GV+ R
Sbjct: 4 RNLAVKILKRVIDEGAYSNIILSNELN-----------EANLEERDKALLTEIVYGVLRR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K+ +DL+I++ +D + +ILR + ++ VP +E V A
Sbjct: 53 KKTLDLIIANF---VRDIKLMDHEVLNILRVAIYQMTFLDKVPTYAACNEAVDEAKKIS- 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ K +N +L S+ +
Sbjct: 109 PEAGKLVNGILRNFSKDPD 127
>gi|331088259|ref|ZP_08337178.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 3_1_46FAA]
gi|330408503|gb|EGG87969.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 456
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R L ++ G + ++ E T + + + G ++
Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKY----------QYLEKRERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID ++ ++ ++ +ILR+ V ++ S+P + SE V +A +
Sbjct: 58 MTEIDYILDCFSKV--KVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
++N VL V + +
Sbjct: 116 SGLRGYVNGVLRSVVKGIDEVE 137
>gi|212639615|ref|YP_002316135.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
gi|212561095|gb|ACJ34150.1| rRNA cytosine-C5-methylase [Anoxybacillus flavithermus WK1]
Length = 446
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+ L I Y + + + D+ +++G
Sbjct: 2 SNVRNVALDVL-----------IDIERKRAYSNLSLHHVIETNELSAQDVALLTELVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R+ +D + + ++ + +LR + ++I +P ++ E V IA
Sbjct: 51 IQRRDTLDYYLQPFIKG-----NIEPWVRLLLRMSLYQMIYLDRIPDRAVLFEAVEIAKR 105
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+ +N +L V R+
Sbjct: 106 RGHRGIASLVNGILRSVQRQ 125
>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
Length = 449
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ AL + G Y +L + D II+GV+
Sbjct: 9 NARELALVALEGVVENG-----------AYSNLQVDQLLKKYPLADKDRRLATNIIYGVL 57
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ++ ++ + RLD + ++L + + + VP + E + IA
Sbjct: 58 QHKLTLEYWLNGFIQG----KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRR 113
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+ VL + RK
Sbjct: 114 GNPGIRKFVTGVLHAILRK 132
>gi|307706106|ref|ZP_07642925.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK321]
gi|307618506|gb|EFN97654.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis SK321]
Length = 437
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E + + Y A + S D +++G + RK ++ +S + ++
Sbjct: 16 EDVFINQAYSNIALNKHLKGSQLSVADKGLATELVYGTVARKLTLEWYLSHFIEDRDQL- 74
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
D L +L +L +P +++E V +A K +NAVL ++ R+
Sbjct: 75 --DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAKVRK-KGSEKLVNAVLRRILRE 129
>gi|191638628|ref|YP_001987794.1| transcription antitermination protein NusB [Lactobacillus casei
BL23]
gi|238693054|sp|B3WEY5|NUSB_LACCB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|190712930|emb|CAQ66936.1| N utilization substance protein B homolog (Protein nusB)
[Lactobacillus casei BL23]
gi|327382670|gb|AEA54146.1| Transcription termination protein nusB [Lactobacillus casei LC2W]
gi|327385864|gb|AEA57338.1| Transcription termination protein nusB [Lactobacillus casei BD-II]
Length = 135
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV+ ++ +D ++ L + WS SRL ILR G+ E+ ++P
Sbjct: 42 AYLTTLVEGVLSKQADLDAALTPQLKKGWSLSRLTKPDLIILRLGLYEIRYEEAMPEAAA 101
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+E + +A + KF+N +L +
Sbjct: 102 INEAINLAKRYSDDQSAKFVNGILANFIQ 130
>gi|300934517|ref|ZP_07149773.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
resistens DSM 45100]
Length = 551
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 14/150 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R +Q L D+ + A + + D + + +G +
Sbjct: 82 RVRDLVLQVL--RDVTQEGA---------FANLALPKALKQERLTGRDAAFATELTYGTL 130
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D +I+ +++D ++ ILR G +++ V + V +A
Sbjct: 131 RALGLLDAVIAK--AAGRPVAKIDSMVLDILRLGAYQVL-RTRVDDHAAVDTAVNLAKAN 187
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
G F+N VL ++R V+
Sbjct: 188 GEGKASGFVNGVLRTITRTPAEDWLARVAG 217
>gi|331091584|ref|ZP_08340420.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330403611|gb|EGG83167.1| ribosomal RNA small subunit methyltransferase B [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 449
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 12/137 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L +I G + ++ + + ++ G ++
Sbjct: 8 REIVLGILLEITKEGGYSHIVLRNTLEKY----------QYLDKKERAFITRVVEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID +I+ +++ ++ +I+R V ++ SVP + +E V +A +
Sbjct: 58 LIEIDYIINQFSKV--KVNKMKPVIRTIIRNSVYQIKYMDSVPNSAVCNEAVKLAEKKGF 115
Query: 140 GDEPKFINAVLDKVSRK 156
F+N VL + R
Sbjct: 116 FQLKGFVNGVLRNIDRN 132
>gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
obeum A2-162]
Length = 450
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L QI+ G + I + + + + G ++
Sbjct: 8 REMILEILLQINEEGEHSHIAIRNALSKY----------QFLPKQERAFITRVCEGTLEY 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I+S ++ + ILR+ + ++ VP + +E V +A +
Sbjct: 58 RILIDYIINSFSKI--PVDKMKAPIREILRSAIYQMKFMDRVPDSAVCNEAVKLAQKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+ F+N VL +R+
Sbjct: 116 YNLKPFVNGVLRTAARQMNELE 137
>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
Length = 447
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 14/145 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R AV+ L +I+ G Y A + +S D+
Sbjct: 1 MKKLNRNPRFLAVKLLERIEKNGS-----------YSNLALNQTIKKSQLDERDVSLLTN 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ RK ++ + + + +L+ + + + +P + +E +
Sbjct: 50 IVYGVIQRKLTLEFYLDGFIKNRRKVEPWVYE---LLKTALYQQLYLDKIPKRAVFNETI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + +F+ +L ++ RK
Sbjct: 107 EIAKVNGHEGIRRFVTGILHEIERK 131
>gi|154173840|ref|YP_001407739.1| transcription antitermination protein NusB [Campylobacter curvus
525.92]
gi|166215674|sp|A7GWZ7|NUSB_CAMC5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|112803582|gb|EAU00926.1| transcription antitermination factor NusB [Campylobacter curvus
525.92]
Length = 131
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY ++ G E E+ E +
Sbjct: 1 MATRHQVRQAVVSLLYAHEM-GSEMNEFKDEFLE-----------EKKIRNERKIQALET 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ +K +D ++ L EK R+ ++ +ILR GV E+ VII+E +
Sbjct: 49 FDAICLKKGELDEILKPYLKEK-DIERIGIVELAILRLGVYEMKFT-GTDKAVIINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+A + PKFIN VLD +
Sbjct: 107 LAKELGGDSAPKFINGVLDAL 127
>gi|313114141|ref|ZP_07799693.1| transcription antitermination factor NusB [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623550|gb|EFQ06953.1| transcription antitermination factor NusB [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 144
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A + E I+ E+ H + + +++
Sbjct: 6 PRREARENAFLLAFSQTFGDIPLAEAIT------------SHEENDEEHPVDGFSKHLLN 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
D +D I + L W+ RL + +ILR V E++ V I+E V +
Sbjct: 54 AYYDHSAEVDDEIRAHL-RNWTMERLPRVSLTILRLAVAEMLFGGENKPGVAINEAVELT 112
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ ++ +F+N +L V+R
Sbjct: 113 KKYGADEDYQFVNGLLGAVARD 134
>gi|116495122|ref|YP_806856.1| transcription antitermination protein NusB [Lactobacillus casei
ATCC 334]
gi|122263461|sp|Q038F8|NUSB_LACC3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|116105272|gb|ABJ70414.1| NusB antitermination factor [Lactobacillus casei ATCC 334]
Length = 135
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV+ ++ +D ++ L + W+ SRL ILR G+ E+ ++P
Sbjct: 42 AYLTTLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAA 101
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+E + +A + KF+N +L +
Sbjct: 102 INEAINLAKRYSDDQSAKFVNGILANFIQ 130
>gi|254383563|ref|ZP_04998913.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
gi|194342458|gb|EDX23424.1| RNA-binding Sun protein [Streptomyces sp. Mg1]
Length = 308
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 57/151 (37%), Gaps = 10/151 (6%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ A + L +D ++ + + + D +++G + R
Sbjct: 44 RMLAFEVLRAVDERDAYANLVLPPLLR-------KARQDENFEARDAALATELVYGTLRR 96
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ D +I++C+ +D + +L G +L+ +P +S V +A
Sbjct: 97 QGTYDAVIAACVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPSHAAVSASVELARVVLG 153
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
KF+NAVL K++ + V+ +
Sbjct: 154 DGRAKFVNAVLRKIAAHDLDAWLEKVAPPYE 184
>gi|190570484|ref|YP_001974842.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019243|ref|ZP_03335050.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190356756|emb|CAQ54115.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995352|gb|EEB55993.1| N utilization substance protein B [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 160
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 7/163 (4%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDI--IGCSTTEIISEYETYRFCADTELDVESV 60
+++ D K +R AR AVQ Y ST ++ + ++
Sbjct: 1 MEEKPVDKKWRIKRSTARFLAVQIAYSNIFVSYNKSTFKLENCELKDYISTLKDIFECEE 60
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ H ++ ++ V+ + D +I S L WS SRL++I SILR V ELI+
Sbjct: 61 FEH---QFLENLLCKVIKSSEEYDKIIESYLHPSWSLSRLNLISLSILRIAVCELIDFD- 116
Query: 121 VPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
P ++I+EY IA D ++ FIN +LDKV + ++
Sbjct: 117 TPAPIVINEYTNIASDLLDAPNKIGFINGLLDKVKDAVRLNKN 159
>gi|227534863|ref|ZP_03964912.1| transcription antitermination protein NusB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227187619|gb|EEI67686.1| transcription antitermination protein NusB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 139
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 13/145 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
R R + + + D +
Sbjct: 3 NKMESRHAIRE-------------AAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ GV+ ++ +D ++ L + W+ SRL ILR G+ E+ ++P I+E
Sbjct: 50 TLVEGVLSKQADLDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAAINEA 109
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
+ +A + KF+N +L +
Sbjct: 110 INLAKRYSDDQSAKFVNGILANFIQ 134
>gi|322418095|ref|YP_004197318.1| sun protein [Geobacter sp. M18]
gi|320124482|gb|ADW12042.1| sun protein [Geobacter sp. M18]
Length = 479
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L +I+ +I + + + D +++GV+ R
Sbjct: 37 RRAAFDILLRIEKEKSFADILIDHELS-----------KDMIKGADRGLLTELVYGVLRR 85
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I ++ +L++ + +LR G+ + VPV ++E V +A +
Sbjct: 86 QGTLDHIIGQFSKQRTD--KLELYVLLLLRLGLYQCFFLDRVPVSAAVNETVKLAKEL-A 142
Query: 140 GDEPKFINAVLDKVSRKEE 158
FINA+L R +
Sbjct: 143 PRASGFINAILRNADRNRD 161
>gi|258404156|ref|YP_003196898.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
gi|257796383|gb|ACV67320.1| NusB/RsmB/TIM44 [Desulfohalobium retbaense DSM 5692]
Length = 429
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 48/152 (31%), Gaps = 16/152 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ L + + + + D +++GV
Sbjct: 10 ARQAALSCLEGVLLRDQELQASLDGVLD-----------SASLEPRDRALATELVYGVCR 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K H++ I+ + K L IL E++ +P + V
Sbjct: 59 HKTHLETAITRFVHPKTRLKP---RLRLILSVAAYEMLYLDRIPAYASVDWAVNAVKKRV 115
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
NAVL +++ +++ G + + +
Sbjct: 116 AVQRAGVANAVLRRLA--DDLHNRGRPAVVHE 145
>gi|262273082|ref|ZP_06050899.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
gi|262222838|gb|EEY74146.1| ribosomal RNA small subunit methyltransferase B [Grimontia hollisae
CIP 101886]
Length = 426
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q +YQ+ G S + + + D + I +GV+
Sbjct: 4 RAVAAQVIYQVVDQGQSLSAALP-------------PAQQKVAPRDGALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESITQSLMDK--PLKGKQRVFHHLILVGLYQLSYMR-IPAHAAVAETVNATKVLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
+NAVL R +E + V+
Sbjct: 108 PQLRGLVNAVLRSYQRNQETLDAASVA 134
>gi|268608467|ref|ZP_06142194.1| transcription termination factor [Ruminococcus flavefaciens FD-1]
Length = 138
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R +A + +++ + TE+ E + + I+
Sbjct: 2 SRREIRDSAFKLVFEQLLRDDDITELYDIAEEIDEIIVNDE-------------VKKIVE 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + +D +I + ++ S SR+ + +ILR + E + + P+ ISE + +A
Sbjct: 49 GTLAHAEELDSII-AGYSKSRSLSRISKLNIAILRIAIYESLYDDNTPMNAAISEAINLA 107
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ + Y ++ KFIN VL SR ++ K S
Sbjct: 108 NTYSYNEDSKFINGVLGAFSRDQKQKES 135
>gi|88607519|ref|YP_505131.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
gi|88598582|gb|ABD44052.1| N utilization substance protein B [Anaplasma phagocytophilum HZ]
Length = 282
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
D+ + AR AVQ Y + + +++ E E+ VD +
Sbjct: 12 DMPWHVGKTSARFLAVQGAYAMMFGAYTASDLEDLLE-----HLCEMQEVLDLHRVDKKL 66
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I+ ++++ +D LIS L EKWS R++++ +++RAGV EL+ VII+
Sbjct: 67 LSKILGCMIEKCNEVDSLISVHLNEKWSMERINLVSLAVMRAGVCELLCLK-TSECVIIN 125
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EYV IA E F+NA+L+K ++
Sbjct: 126 EYVGIASTVLEKSEVNFVNAILNK-AKTVRSPE 157
>gi|332366359|gb|EGJ44110.1| RNA methyltransferase Sun [Streptococcus sanguinis SK355]
Length = 438
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 15/146 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKKARWQALEILEEVFEEG-----------AYSNIAINRALSQSQLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P ++ E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLELSLYQMLYLDKIPQHAVVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
IA KF+NA+L ++ R++
Sbjct: 107 EIAKIRK-RGSEKFVNALLRRIERED 131
>gi|302541076|ref|ZP_07293418.1| sun protein [Streptomyces hygroscopicus ATCC 53653]
gi|302458694|gb|EFL21787.1| sun protein [Streptomyces himastatinicus ATCC 53653]
Length = 482
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 16/160 (10%)
Query: 1 MTIQDNKK----DLKLSH--RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M+ Q K ++ R+ A +AL +D ++ +
Sbjct: 1 MSPQSGPPRRSHPGKPYRRPKKDPVRILAFEALRAVDERDAYANLVLPPLLR-------K 53
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ + D +++G + + D +I+ C+ +D + +L G +
Sbjct: 54 AREDGGFDARDAALTTELVYGTLRLQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQ 111
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
L+ +P +S V +A KF+NAVL K++
Sbjct: 112 LLGTR-IPTHAAVSASVELARVVLGDGRAKFVNAVLRKIA 150
>gi|253581940|ref|ZP_04859164.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
gi|251836289|gb|EES64826.1| N utilization substance protein B [Fusobacterium varium ATCC 27725]
Length = 132
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR + +++ +I +T +I+ Y E ++ + + ++
Sbjct: 2 SRRLAREELFKLVFEGEIKEENTKDILESYLNREEILQNEN---------EIAFIKKYMN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + I +I +T WSF R+ + ++L+ V E++ C P E++I+E V +A
Sbjct: 53 GIAENNDKILKVIEEKITG-WSFERIGNVEKALLKISVYEIL-CEDTPYEIVINEAVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ +F+N VL K+
Sbjct: 111 KIYGDEKTSEFLNGVLAKIVNN 132
>gi|254415201|ref|ZP_05028963.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
chthonoplastes PCC 7420]
gi|196178007|gb|EDX73009.1| ribosomal RNA small subunit methyltransferase B [Microcoleus
chthonoplastes PCC 7420]
Length = 448
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 13/136 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A AL I G T + + + D +++G
Sbjct: 5 RQLAFLALRDIHSHGAFTDIALDRVLRH-----------TTLNRPDRALLTDLVYGTTRH 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D LI + + L IL G+ +L +P ++ V +A
Sbjct: 54 TRTLDALIDQLGKK--KAHQQPPDLRLILHLGLYQLRYLQRIPPSAAVNTSVELAKANQL 111
Query: 140 GDEPKFINAVLDKVSR 155
+N VL + +R
Sbjct: 112 KGLAGVVNGVLRQYAR 127
>gi|153815686|ref|ZP_01968354.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
gi|145846927|gb|EDK23845.1| hypothetical protein RUMTOR_01922 [Ruminococcus torques ATCC 27756]
Length = 456
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R L ++ G + ++ E T + + + G ++
Sbjct: 8 REIVAAILMEVTENGRYSHIVLREVLTKY----------QYLEKRERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID ++ ++ ++ +ILR+ V ++ S+P + SE V +A +
Sbjct: 58 MTEIDYILDCFSKV--KVKKMKPLIRAILRSAVYQIKYMDSIPDHAVCSESVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
++N VL V + +
Sbjct: 116 SGLRGYVNGVLRSVVKGIDEVE 137
>gi|118474879|ref|YP_892479.1| transcription antitermination protein NusB [Campylobacter fetus
subsp. fetus 82-40]
gi|166215675|sp|A0RQJ6|NUSB_CAMFF RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|118414105|gb|ABK82525.1| transcription antitermination factor NusB [Campylobacter fetus
subsp. fetus 82-40]
Length = 131
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + V LY ++ G E +E+ E + + +
Sbjct: 1 MATRHQVRQSVVSLLYANEM-GSEMEEFSNEFLE-----------EKKIRNDQKSFTLTL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+D ID + + L KW + + +ILR G E+ ++ ++I+E +
Sbjct: 49 YNGVLDNLNLIDEALDAHL-GKWKLGEIGAVERAILRLGAYEIKFTNTQS-AIVINEAIL 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+A++ +FIN VLD +S+
Sbjct: 107 LANELGSDSSTRFINGVLDAISK 129
>gi|169832803|ref|YP_001695109.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae Hungary19A-6]
gi|168995305|gb|ACA35917.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae Hungary19A-6]
Length = 437
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NA+L ++ R+
Sbjct: 112 KKGSEKLVNALLRRILRE 129
>gi|311113844|ref|YP_003985066.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
gi|310945338|gb|ADP41632.1| exopolyphosphatase [Rothia dentocariosa ATCC 17931]
Length = 536
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L + ++ H D +
Sbjct: 36 RSRSADPARLVAFEVLNAVAQNDSYANLVLPG-----------TIRAHHLDHRDAGFATE 84
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + + D +++ C ++ +LR GV +L+ VP +++ V
Sbjct: 85 LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 141
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A G F+NAVL +VS + + + A +
Sbjct: 142 ALARAQIGGGPANFVNAVLRRVSERSREEWYARLEADAK 180
>gi|298346844|ref|YP_003719531.1| putative transcription antitermination protein NusB [Mobiluncus
curtisii ATCC 43063]
gi|298236905|gb|ADI68037.1| possible transcription antitermination protein NusB [Mobiluncus
curtisii ATCC 43063]
Length = 174
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
LY+ + G T E I R E+ + I+ GV + + ID
Sbjct: 1 MLYEAHVRGWDTPEGIFSLSQLR-------QDETTAQTPLPAYAVEILEGVAEHLERIDA 53
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+ + ++ W R+ + +I+R E++ V V I+ + IA + + PKF
Sbjct: 54 AL-ATYSKAWPLHRMPEVDLAIMRVAAWEILFNPDVTGPVAITAAMQIAEERSTDESPKF 112
Query: 146 INAVLDKVSRKEEI 159
IN +L + +
Sbjct: 113 INGLLGAIDDMRDT 126
>gi|225861556|ref|YP_002743065.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230282|ref|ZP_06963963.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254901|ref|ZP_06978487.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298503480|ref|YP_003725420.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
TCH8431/19A]
gi|225726400|gb|ACO22251.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae Taiwan19F-14]
gi|298239075|gb|ADI70206.1| rRNA SAM-dependent methyltransferase RmsB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389919|gb|EGE88264.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA04375]
gi|332200294|gb|EGJ14367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae GA47368]
Length = 437
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NA+L ++ R+
Sbjct: 112 KKGSEKLVNALLRRILRE 129
>gi|149020816|ref|ZP_01835345.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
SP23-BS72]
gi|221232467|ref|YP_002511620.1| ribosomal RNA small subunit methyltransferase [Streptococcus
pneumoniae ATCC 700669]
gi|225855165|ref|YP_002736677.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae JJA]
gi|147930457|gb|EDK81440.1| hypothetical protein CGSSp23BS72_02224 [Streptococcus pneumoniae
SP23-BS72]
gi|220674928|emb|CAR69504.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pneumoniae ATCC 700669]
gi|225722386|gb|ACO18239.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pneumoniae JJA]
Length = 437
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L E + + Y A + S L D +++G +
Sbjct: 7 ARSLALAVL-----------EDVFVNQAYSNIALNKHLKGSQLLAADKGLVTELVYGTVA 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ D L +L +L +P +++E V +A
Sbjct: 56 RKLTLEWYLSHFIEDRDQL---DSWLYVLLLMSAYQLRYLDKIPDHAVVNEAVELAK-LR 111
Query: 139 YGDEPKFINAVLDKVSRK 156
K +NA+L ++ R+
Sbjct: 112 KKGSEKLVNALLRRILRE 129
>gi|125624853|ref|YP_001033336.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
subsp. cremoris MG1363]
gi|4210751|emb|CAA10711.1| sunL protein [Lactococcus lactis]
gi|124493661|emb|CAL98648.1| Ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071650|gb|ADJ61050.1| ribosomal RNA small subunit methyltransferase B [Lactococcus lactis
subsp. cremoris NZ9000]
Length = 424
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 17/147 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L DI G Y + +S VD + +++GV
Sbjct: 3 KNARQTALDVL--NDIFGNDA---------YANISLDRNLRDSELSTVDKGFVTALVYGV 51
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K ++ I+ L ++ +L + +++ VP+ + E V IA
Sbjct: 52 VSKKALLEWYITPLLKKEPK-----PWAKMLLLLTIYQVLFMDKVPISAAVDEAVKIAKR 106
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRS 162
FINAVL R + +
Sbjct: 107 HDGQATANFINAVLRNFMRSEHRNEEP 133
>gi|241889945|ref|ZP_04777243.1| ribosomal RNA small subunit methyltransferase B [Gemella
haemolysans ATCC 10379]
gi|241863567|gb|EER67951.1| ribosomal RNA small subunit methyltransferase B [Gemella
haemolysans ATCC 10379]
Length = 441
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + LY I + + Y + + D + +++G +
Sbjct: 5 NARHIAYEVLY-----------TIIQEDGYSNITLNKYFNQYKVEEQDKRFISEVVYGSI 53
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ ++ S + + IL + +L+ P +I E V +
Sbjct: 54 KNKLYLEHILKSYSKGRVKPK-----VKVILLMSIYQLLYMDKTPNFAVIDEAVKLGKKI 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+N +L + R
Sbjct: 109 AGNITGKFVNGILRNIERN 127
>gi|68536089|ref|YP_250794.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
jeikeium K411]
gi|68263688|emb|CAI37176.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
jeikeium K411]
Length = 506
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 3/122 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+ A + E+ D + + +G + + +D +I ++D +
Sbjct: 61 AFGNLALPKALREAGIKGRDAAFATELTYGTLRARGLLDAIIED--AAGRKIEKIDSVAL 118
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
LR G +++ V ++ V + F G F+N VL ++RK+ V
Sbjct: 119 DALRLGAYQIL-RTRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALARKKPETWIERV 177
Query: 166 SA 167
+
Sbjct: 178 AP 179
>gi|116512767|ref|YP_811674.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
cremoris SK11]
gi|116108421|gb|ABJ73561.1| tRNA and rRNA cytosine-C5-methylase [Lactococcus lactis subsp.
cremoris SK11]
Length = 424
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 17/147 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L DI G Y + +S VD + +++GV
Sbjct: 3 KNARQTALDVL--NDIFGNDA---------YANISLDRNLRDSELSTVDKGFVTALVYGV 51
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K ++ I+ L ++ +L + +++ VP + E V IA
Sbjct: 52 VSKKALLEWYITPLLKKEPK-----PWAKMLLLLTIYQVLFMDKVPTSAAVDEAVKIAKR 106
Query: 137 FFYGDEPKFINAVLDKVSR-KEEIKRS 162
FINAVL R + +
Sbjct: 107 HDGQATANFINAVLRNFMRSEHRNEEP 133
>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
Length = 449
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ AL + G Y +L + D II+GV+
Sbjct: 9 NARELALVALEGVVENG-----------AYSNLQVDQLLKKYPLADKDRRLATNIIYGVL 57
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ++ ++ + RLD + ++L + + + VP + E + IA
Sbjct: 58 QHKLTLEYWLNGFVQG----KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRR 113
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+ VL + RK
Sbjct: 114 GNPGIRKFVTGVLHAILRK 132
>gi|326773300|ref|ZP_08232583.1| transcription antitermination factor NusB [Actinomyces viscosus
C505]
gi|326636530|gb|EGE37433.1| transcription antitermination factor NusB [Actinomyces viscosus
C505]
Length = 163
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 5/150 (3%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R AR A++ L++ D G ++E E ++ V S +
Sbjct: 19 PVTARTKARRRAIEILFEADQRGMLSSEGSEELRSFAQL----RAVSSANHTEAPAYTGE 74
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ G+ D +D I + W+ R+ + +I R E++ V V + E +
Sbjct: 75 ILDGLCDHLGDVDETI-QTYAQGWTLGRMPAVDRAIARVATWEIVYNDEVDAPVAVDEAM 133
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ + P+++ +L ++ + R
Sbjct: 134 TLSRMLSTDESPRYLGGLLGRIGDLADTLR 163
>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
Length = 482
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ S +II + + E D + +++G +
Sbjct: 29 ARFQAM----------ESVNQIIRHNH-FINQEVNRVLTEEAVAEADRNLYTNLVYGSVQ 77
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D + + + + S+L ++ ++P ++ E V I
Sbjct: 78 NYYTLDAFVRDFVAKPNKVKSW---VWSLLIVSAYQMYYLDNIPNYAVVDEAVRIVRKRG 134
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
KF N VL +R+ E
Sbjct: 135 NQTLAKFANGVLRNFTRRYET 155
>gi|332670476|ref|YP_004453484.1| Fmu (Sun) domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332339514|gb|AEE46097.1| Fmu (Sun) domain protein [Cellulomonas fimi ATCC 484]
Length = 568
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 17/154 (11%)
Query: 6 NKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ + RR AR AA L + ++ R
Sbjct: 47 TRTSAAPAQRRRSGDAARRAAFDTLRAVAEGDAYANLVLPPMLRER-----------GVQ 95
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + + +G + + D ++ L R+D + +LR G +L+ VP
Sbjct: 96 GRDAAFATELAYGTLRLRGRYDAVVE--LAAARPVDRIDAPVLDLLRLGTHQLLGMR-VP 152
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+SE V +A + +F+NAVL VSR+
Sbjct: 153 AHAAVSETVGLAREVTGAGPAQFVNAVLRAVSRE 186
>gi|227873694|ref|ZP_03991927.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227840462|gb|EEJ50859.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 185
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 5/143 (3%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL----DVESVYLHVDLEWFR 70
+ R + L+ + + +Y D + E + +
Sbjct: 2 NKREERDHKFKLLFSTLFYPEEGKQEQLSHYSYSKEEDEDFLLPEKEEEHLSEEEEAFLS 61
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +++R H+D I++ TE W+ SR+ ++LR + EL P +V+ +E
Sbjct: 62 QEVMKILERLPHLDERINAV-TEGWTTSRMSKTDLTVLRLALYELEYQEETPDKVVFNEA 120
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V IA + D F+N VL ++
Sbjct: 121 VEIAKKYGGADSGSFVNGVLARI 143
>gi|298256363|gb|ADI71472.1| putative tRNA/rRNA cytosine-C5-methylase [Amycolatopsis orientalis
subsp. vinearia]
Length = 474
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/181 (18%), Positives = 58/181 (32%), Gaps = 28/181 (15%)
Query: 1 MTIQDNKKDLKLSHRRGI--------------ARLAAVQALYQIDIIGCSTTEIISEYET 46
M ++ + R AR AA L + +
Sbjct: 1 MNDNRERRPSRPQRGRPAPRKEGPRRPPSVDPARQAAFDVL-----------AAVRTKDA 49
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y +L E D + +G + +D +I SC + S+ D +
Sbjct: 50 YANLVLPDLLRERRITGRDAALATELAYGASRAQGLLDAVIESC--AERPLSQTDPAVLD 107
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
LR GV +L+ +P ++ V + F NAV+ KVS K+E ++
Sbjct: 108 ALRLGVYQLL-RTRIPGHAAVTSTVDLVRAEGGSWATGFANAVMRKVSEKDEAAWLDELA 166
Query: 167 A 167
Sbjct: 167 P 167
>gi|197302406|ref|ZP_03167462.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
29176]
gi|197298527|gb|EDY33071.1| hypothetical protein RUMLAC_01134 [Ruminococcus lactaris ATCC
29176]
Length = 458
Score = 74.8 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L +I G + +I+ E + + + + G ++
Sbjct: 8 REIVLAVLMEITENGAYSHKILGEVLSKY----------QYLEKKERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID ++ K ++ ++ +ILR+GV +L SVP + SE V +A +
Sbjct: 58 LIEIDYILDQFSKVKV--KKMKPVIRNILRSGVYQLKYMDSVPDHAVCSEAVKLAVRKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEI 159
++N VL V+R +
Sbjct: 116 SGLKGYVNGVLRSVARGLDT 135
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + +D + + ++ GV+
Sbjct: 2 KPREIAYKILQEVL-----------SKEAYANITFNKYLKGQELKEIDRGFTKELVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + D L G+ +L+ VP I+E V IA +
Sbjct: 51 ERKYTLDFILSFFVK-----KPADEKSKIFLEMGLYQLLYMDKVPSYAAINETVNIAKNV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRSYEREKE 126
>gi|237735904|ref|ZP_04566385.1| SUN protein [Mollicutes bacterium D7]
gi|229381649|gb|EEO31740.1| SUN protein [Coprobacillus sp. D7]
Length = 417
Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 19 ARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L YQ + Y + +S+ D + I++G
Sbjct: 2 ARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYGT 48
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K +++ ++ + ++ IL + +LI VP +I E V +A
Sbjct: 49 IQNKLYLEYQLAPYIQG----KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK 104
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
KF+NA+L R +
Sbjct: 105 R-DNFAGKFVNAILRNFLRNGK 125
>gi|325688781|gb|EGD30790.1| RNA methyltransferase Sun [Streptococcus sanguinis SK115]
Length = 438
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + AR A++ L ++ G Y A +S D
Sbjct: 1 MESKHKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KFINA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFINALLRRIERE 130
>gi|94971255|ref|YP_593303.1| sun protein [Candidatus Koribacter versatilis Ellin345]
gi|94553305|gb|ABF43229.1| sun protein [Candidatus Koribacter versatilis Ellin345]
Length = 432
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 14/141 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ +R A L +++ +E++ D + D ++
Sbjct: 2 SKNPSRATAFDILLRVERDQAFASELL------------HSDRLNDLSAPDRGLATELVM 49
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + + +D L+++ ++ +LD+ + LR +L +P ++E V +
Sbjct: 50 GTLRWQSTLDALVATQSSQ--PLRKLDIEVLIALRLAAYQLQFLDRIPANAAVNESVELV 107
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F NAVL K+S+
Sbjct: 108 KRARKRSAVPFANAVLRKISK 128
>gi|116511490|ref|YP_808706.1| transcription termination factor [Lactococcus lactis subsp.
cremoris SK11]
gi|116107144|gb|ABJ72284.1| Transcription termination factor [Lactococcus lactis subsp.
cremoris SK11]
Length = 325
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
Q+ + +S+ D + E+F ++ GV+++K+ +++ IS
Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L + WSFSRL ++ +IL+ E++ P V ++E + ++ DF +FIN
Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFTD-TPNVVAVNEAIELSKDFSDEKSSRFING 316
Query: 149 VLDKVSRKE 157
VL +++
Sbjct: 317 VLTNFLKED 325
>gi|258592639|emb|CBE68948.1| Sun protein [NC10 bacterium 'Dutch sediment']
Length = 467
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L Q++ Y ++ D + +GV+
Sbjct: 18 ARRLAFEILTQVEEQQ-----------AYASLLLDAKLKQARLSQQDRALATELTYGVLR 66
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA---- 134
+ +D L+++ + R+D L +LR G +++ VP ++E V +A
Sbjct: 67 WQGRLDYLLAAVTDR--PWDRVDPALRRLLRLGAYQILFLTRVPAYAAVNETVALAQDVM 124
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NA+L ++ + R S
Sbjct: 125 RSQLKPVAKAFVNAILRRLLERHATIRFPDPSG 157
>gi|167757026|ref|ZP_02429153.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
gi|167703201|gb|EDS17780.1| hypothetical protein CLORAM_02575 [Clostridium ramosum DSM 1402]
Length = 417
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 19 ARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L YQ + Y + +S+ D + I++G
Sbjct: 2 ARTTALDVLIKYQNEQS-------------YLNITLNDYLEKSLLSRNDKDLATRIVYGT 48
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K +++ ++ + ++ IL + +LI VP +I E V +A
Sbjct: 49 IQNKLYLEYQLAPYIQG----KKIKNREKMILLMSLYQLIFLDKVPDYAVIDEAVRLAKK 104
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
KF+NA+L R +
Sbjct: 105 R-DNFAGKFVNAILRNFLRNGK 125
>gi|323350301|ref|ZP_08085966.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
gi|322123486|gb|EFX95157.1| RNA methyltransferase Sun [Streptococcus sanguinis VMC66]
Length = 438
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSKLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KFINA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFINALLRRIERE 130
>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|300909760|ref|ZP_07127221.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
reuteri SD2112]
gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|300893625|gb|EFK86984.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
reuteri SD2112]
Length = 449
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ AL + G Y +L D II+GV+
Sbjct: 9 NARELALVALKGVVENG-----------AYSNLQVDQLLKRYPLADKDRRLATNIIYGVL 57
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K ++ ++ + RLD + ++L + + + VP + E + IA
Sbjct: 58 QHKLTLEYWLNGFVQG----KRLDPWVKTLLLSALYQYHYLERVPDWAVTDESIEIAKRR 113
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+ VL + RK
Sbjct: 114 GNPGIRKFVTGVLHAILRK 132
>gi|125624663|ref|YP_001033146.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris MG1363]
gi|124493471|emb|CAL98448.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071455|gb|ADJ60855.1| transcription termination protein nusB [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 325
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
Q+ + +S+ D + E+F ++ GV+++K+ +++ IS
Sbjct: 198 QLQQAETTAESHLSDLLKETKHFVLNYDNDRAEDLEAPEYFTQLVDGVLEKKEDLEINIS 257
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L + WSFSRL ++ +IL+ E++ P V ++E + ++ DF +FIN
Sbjct: 258 KYLAKNWSFSRLTLVEQAILQVSTYEILFTD-TPNVVAVNEAIELSKDFSDEKSSRFING 316
Query: 149 VLDKVSRKE 157
VL +++
Sbjct: 317 VLTNFLKED 325
>gi|184200984|ref|YP_001855191.1| antitermination factor NusB [Kocuria rhizophila DC2201]
gi|183581214|dbj|BAG29685.1| transcription antitermination protein NusB [Kocuria rhizophila
DC2201]
Length = 138
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S R AR+ AV+ L++ + S + + +
Sbjct: 1 MSGARSKARVRAVEILFEAEQRNESVRDALVRRRENS-------------SSPINPYTVE 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ GV +R++ ID + ++ W+ R+ + + LR G EL+ +P V ++E V
Sbjct: 48 ILEGVDERREDIDEFL-ETYSQGWALGRMPAVDRNALRVGAWELLYNSEIPDGVAVAEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR 155
+ D P+F+N +L ++ +
Sbjct: 107 AVTRQLSTDDSPRFVNGLLGRLQK 130
>gi|332362987|gb|EGJ40776.1| RNA methyltransferase Sun [Streptococcus sanguinis SK49]
Length = 438
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L E+ E Y A +S D
Sbjct: 1 MESKQKTARWQALEIL----------EEVFEER-AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRNKL---DNWLYILLMLSLYQMLFLDKIPQHAAVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFVNALLRRIERE 130
>gi|23296076|gb|AAN12293.1| transcription termination factor [Aquifex pyrophilus]
Length = 144
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 11/154 (7%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A LY+ D+ G +EI E + + + + +
Sbjct: 1 MRYRKSARDTAFLVLYRWDLRGDKPSEIFKEVVEEKNIQNKNTYE----------YAKKL 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ ID +I L WS RL + + LR GV EL+ S + + +
Sbjct: 51 VETTVNNISEIDAIIEKHLKG-WSIDRLGYVERNALRLGVAELLFLKSQEPGRVFIDIID 109
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
I F KF+N VL + R K+ V
Sbjct: 110 IVKKFTDEKAAKFVNGVLSAIYRSFLEKKKEKVK 143
>gi|284928897|ref|YP_003421419.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
gi|284809356|gb|ADB95061.1| ribosomal RNA small subunit methyltransferase RsmB [cyanobacterium
UCYN-A]
Length = 453
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 13/145 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR ++ L +ID + + + D +++G+
Sbjct: 4 SNARQLVLKILREIDKNNS-----------FINISLDSAFKHNELSRQDRGLCTELVYGI 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ +D LI +K + +L IL G+ +L+ VP+ ++ V +A +
Sbjct: 53 IRCQRTLDSLIDQLGNKKS--QKQSPVLRRILHIGLYQLLYLDHVPLSAAVNTSVDLAKN 110
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
K +NA+L + R ++ +
Sbjct: 111 NNLNVLSKVVNAILREYIRVKKKEN 135
>gi|238917018|ref|YP_002930535.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
gi|238872378|gb|ACR72088.1| N utilization substance protein B [Eubacterium eligens ATCC 27750]
Length = 135
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L++ I + AD ++ S + + + + +
Sbjct: 2 REHIFKLLFRAPFIDNKDEYEEQINLYF---ADADMVDASHLKEEEYNYIKDKTLAIAEL 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D I S +E W SRL SI+R V E++ +P V ++E V +A +
Sbjct: 59 IPELDEKIDSV-SEGWPTSRLGKTELSIMRLAVYEMLYDEDIPTNVALNEAVELAKKYGS 117
Query: 140 GDE-PKFINAVLDKVSRK 156
D F+N VL K+ ++
Sbjct: 118 ADSTAAFVNGVLGKLIKE 135
>gi|315656712|ref|ZP_07909599.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315492667|gb|EFU82271.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 520
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ RR AR A QAL ++D ++ D +
Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERA-----------RLHRRDAAFAT 86
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + + D +I + LD L ++LR G+ ++++ +
Sbjct: 87 ELVYGTLRLQGRYDAIIGLLSDR--DIAALDPELVTVLRMGIHQILQMRVEDYAA-VDTM 143
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A D +NAVL KV
Sbjct: 144 VDLARDRLSAGPAGMVNAVLRKV 166
>gi|315655374|ref|ZP_07908274.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii ATCC 51333]
gi|315490314|gb|EFU79939.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii ATCC 51333]
Length = 523
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ RR AR A QAL ++D ++ D +
Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERA-----------RLHRRDAAFAT 86
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + + D +I + LD L ++LR G+ ++++ +
Sbjct: 87 ELVYGTLRLQGRYDAIIGLLSDR--DIAALDPELVTVLRMGIHQILQMRVEDYAA-VDTM 143
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A D +NAVL KV
Sbjct: 144 VDLARDRLSAGPAGMVNAVLRKV 166
>gi|304389466|ref|ZP_07371429.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|304327276|gb|EFL94511.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
Length = 523
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 14/143 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ RR AR A QAL ++D ++ D +
Sbjct: 38 RSKTRRDPARDVAFQALRRVDQDHAYANLVLPGLIERA-----------RLHRRDAAFAT 86
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + + D +I + LD L ++LR G+ ++++ +
Sbjct: 87 ELVYGTLRLQGRYDAIIGLLSDR--DIAALDPELVTVLRMGIHQILQMRVEDYAA-VDTM 143
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A D +NAVL KV
Sbjct: 144 VDLARDRLSAGPAGMVNAVLRKV 166
>gi|229174859|ref|ZP_04302379.1| N utilization substance protein B [Bacillus cereus MM3]
gi|228608527|gb|EEK65829.1| N utilization substance protein B [Bacillus cereus MM3]
Length = 114
Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
++ ++ G ++ K+ ID I L + W R+ ++ SILR V E+
Sbjct: 18 DEGEETNDFLESLVVGFVENKEVIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYME 76
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P V I+E + IA F + +FIN VL +
Sbjct: 77 EIPHNVTINEAIEIAKTFGDEESRRFINGVLSNI 110
>gi|28895207|ref|NP_801557.1| transcription antitermination protein NusB [Streptococcus pyogenes
SSI-1]
gi|28810453|dbj|BAC63390.1| putative transcriptional terminator [Streptococcus pyogenes SSI-1]
Length = 126
Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+ + D ++ L + + ++ GV + K+ +D LIS+ L + WS RL +
Sbjct: 10 QFAYGYDKVTGEDAQVLEL-PIFLLSLVTGVNNHKEELDNLISTHLKKGWSLERLTLTDK 68
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++LR G+ E+ P V ++E + +A + KFIN +L + +
Sbjct: 69 TLLRLGLFEIKYFDETPDRVALNEIIEVAKKYSDETSAKFINGLLSQYVSE 119
>gi|313891837|ref|ZP_07825442.1| transcription antitermination factor NusB [Dialister
microaerophilus UPII 345-E]
gi|313119831|gb|EFR43018.1| transcription antitermination factor NusB [Dialister
microaerophilus UPII 345-E]
Length = 133
Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +R A++ LY ++ + Y ++ +I+
Sbjct: 2 KRRYSREYALEVLYANELNPQTEKINSEIY--------------KKLSDSGKQFAESLIN 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132
V + + IDLLI + + WS ++L+++ +ILR + E++ VI +E +
Sbjct: 48 SVRENNEEIDLLIKKHIKK-WSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
IA + + KFIN +L+ VS
Sbjct: 107 IAKIYGGKNSFKFINGILESVS 128
>gi|300741740|ref|ZP_07071761.1| ribosomal RNA small subunit methyltransferase B [Rothia
dentocariosa M567]
gi|300380925|gb|EFJ77487.1| ribosomal RNA small subunit methyltransferase B [Rothia
dentocariosa M567]
Length = 580
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L + ++ H D +
Sbjct: 80 RSRSADPARLVAFEVLNAVAQNDSYANLVLPG-----------TIRAHHLDHRDAGFATE 128
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + + D +++ C ++ +LR GV +L+ VP +++ V
Sbjct: 129 LTYGTLRSQGTYDAILAHCADR--PLEKIGTTTLIVLRMGVHQLLSMR-VPAHAALNQSV 185
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+A G F+NAVL +VS + + + A +
Sbjct: 186 ALARAQIGGGPANFVNAVLRRVSERSREEWYARLEADAK 224
>gi|199597165|ref|ZP_03210597.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
HN001]
gi|258508679|ref|YP_003171430.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
GG]
gi|258539856|ref|YP_003174355.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
Lc 705]
gi|199591969|gb|EDZ00044.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
HN001]
gi|257148606|emb|CAR87579.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
GG]
gi|257151532|emb|CAR90504.1| N utilization substance protein B homolog [Lactobacillus rhamnosus
Lc 705]
gi|259649985|dbj|BAI42147.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
GG]
Length = 135
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV+ + +D ++ L + W+ SRL ILR G+ E+ ++P
Sbjct: 42 SYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAA 101
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E + +A + KF+N +L
Sbjct: 102 INEAINLAKRYSDEQSAKFVNGILANFI 129
>gi|169629894|ref|YP_001703543.1| Fmu protein (SUN protein) [Mycobacterium abscessus ATCC 19977]
gi|169241861|emb|CAM62889.1| Probable Fmu protein (SUN protein) [Mycobacterium abscessus]
Length = 471
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 18/171 (10%)
Query: 2 TIQDNKKDLKLSHR-RGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
+ QD+++ + R R R AA+ L + + R
Sbjct: 10 SNQDSRRSAGPAERARRKLDPPRQAALDVLRAVSRQDAYANLALPALLRER--------- 60
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D + + +G + +D +I + + ++D L LR G +L+
Sbjct: 61 --GITGRDAAFATELTYGTCRARGLLDAVIEA--AAGRTIDQVDEGLRDPLRLGAYQLLR 116
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
P +S V F F+NAVL +SR++E ++
Sbjct: 117 TRVEP-HAALSTTVDAVAVEFDQGRAGFVNAVLRTISRRDEADWVEELAPP 166
>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L ++ G + I+S+ E D I++GV+ R
Sbjct: 4 RKLAVKILNRVLNEGAYSNIILSKELN-----------EVELNDKDKALLTEIVYGVLRR 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K+ +D++I++ + +D + +ILR + ++ +P +E V A +
Sbjct: 53 KRTLDVIIANFVK---DIKLMDKNILNILRVAIYQMNFLDKIPTYAACNEAVEEAKEISE 109
Query: 140 GDEPKFINAVLDKVSRKEE 158
D K +N +L ++ +
Sbjct: 110 NDS-KLVNGILRSFTKNPD 127
>gi|325261900|ref|ZP_08128638.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
gi|324033354|gb|EGB94631.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
D5]
Length = 451
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L +DI I+ L + + + G ++
Sbjct: 8 REIVLGLL--LDITEHDVYSHIA--------LGNVLSKYQYLDKKERAFITRVTEGTLEH 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D ++ K ++ ++ +ILR+ V +L SVP + +E V +A +
Sbjct: 58 LMELDYILGQFSKVKV--KKMKPVIRNILRSAVYQLKYMDSVPDSAVCNEAVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
G F+N VL V+R +
Sbjct: 116 GSLRGFVNGVLRNVARGLDTVE 137
>gi|315634386|ref|ZP_07889673.1| transcription termination/antitermination factor NusB
[Aggregatibacter segnis ATCC 33393]
gi|315476976|gb|EFU67721.1| transcription termination/antitermination factor NusB
[Aggregatibacter segnis ATCC 33393]
Length = 102
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
E VD +FR + ++ + ++ + L LD I +ILR V EL
Sbjct: 1 MTEQDMKGVDTPYFRKLFRQTVENVEAVERTMQGYLDRG--LEELDPIEKAILRLAVYEL 58
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F + K+IN VLDK++
Sbjct: 59 QFEADVPYKVVINEAIEVAKVFGADESHKYINGVLDKIA 97
>gi|306784137|ref|ZP_07422459.1| SUN protein [Mycobacterium tuberculosis SUMu003]
gi|306797229|ref|ZP_07435531.1| SUN protein [Mycobacterium tuberculosis SUMu006]
gi|306803111|ref|ZP_07439779.1| SUN protein [Mycobacterium tuberculosis SUMu008]
gi|308331083|gb|EFP19934.1| SUN protein [Mycobacterium tuberculosis SUMu003]
gi|308342392|gb|EFP31243.1| SUN protein [Mycobacterium tuberculosis SUMu006]
gi|308350182|gb|EFP39033.1| SUN protein [Mycobacterium tuberculosis SUMu008]
Length = 457
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + ++ R D + + +G
Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQR-----------GIGGRDAAFATELTYGTCR 64
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + + S +D +L +LR G +L+ V +S V A F
Sbjct: 65 ARGLLDAVIGA--AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL ++ ++E G ++ Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153
>gi|215430293|ref|ZP_03428212.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
gi|289753488|ref|ZP_06512866.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
gi|289694075|gb|EFD61504.1| fmu protein (sun protein) [Mycobacterium tuberculosis EAS054]
Length = 254
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + ++ R D + + +G
Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQR-----------GIGGRDAAFATELTYGTCR 64
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + + S +D +L +LR G +L+ V +S V A F
Sbjct: 65 ARGLLDAVIGA--AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL ++ ++E G ++ Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153
>gi|215403254|ref|ZP_03415435.1| fmu protein (sun protein) [Mycobacterium tuberculosis 02_1987]
gi|289745158|ref|ZP_06504536.1| sun protein [Mycobacterium tuberculosis 02_1987]
gi|289685686|gb|EFD53174.1| sun protein [Mycobacterium tuberculosis 02_1987]
Length = 768
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + ++ R D + + +G
Sbjct: 327 ARRAAFETLRAVSARDAYANLVLPALLAQR-----------GIGGRDAAFATELTYGTCR 375
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + + S +D +L +LR G +L+ V +S V A F
Sbjct: 376 ARGLLDAVIGA--AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 432
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL ++ ++E G ++ Q
Sbjct: 433 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 464
>gi|31792601|ref|NP_855094.1| Fmu protein (SUN protein) [Mycobacterium bovis AF2122/97]
gi|121637337|ref|YP_977560.1| putative fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|215426744|ref|ZP_03424663.1| putative fmu protein [Mycobacterium tuberculosis T92]
gi|219557310|ref|ZP_03536386.1| putative fmu protein [Mycobacterium tuberculosis T17]
gi|224989812|ref|YP_002644499.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|260186346|ref|ZP_05763820.1| putative fmu protein [Mycobacterium tuberculosis CPHL_A]
gi|260200462|ref|ZP_05767953.1| putative fmu protein [Mycobacterium tuberculosis T46]
gi|260204672|ref|ZP_05772163.1| putative fmu protein [Mycobacterium tuberculosis K85]
gi|289442852|ref|ZP_06432596.1| SUN protein [Mycobacterium tuberculosis T46]
gi|289447003|ref|ZP_06436747.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
gi|289569424|ref|ZP_06449651.1| SUN protein [Mycobacterium tuberculosis T17]
gi|289574076|ref|ZP_06454303.1| SUN protein [Mycobacterium tuberculosis K85]
gi|289749965|ref|ZP_06509343.1| SUN protein [Mycobacterium tuberculosis T92]
gi|31618190|emb|CAD94303.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium bovis AF2122/97]
gi|121492984|emb|CAL71455.1| Probable fmu protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772925|dbj|BAH25731.1| putative fmu protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|289415771|gb|EFD13011.1| SUN protein [Mycobacterium tuberculosis T46]
gi|289419961|gb|EFD17162.1| SUN protein [Mycobacterium tuberculosis CPHL_A]
gi|289538507|gb|EFD43085.1| SUN protein [Mycobacterium tuberculosis K85]
gi|289543178|gb|EFD46826.1| SUN protein [Mycobacterium tuberculosis T17]
gi|289690552|gb|EFD57981.1| SUN protein [Mycobacterium tuberculosis T92]
Length = 457
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + ++ R D + + +G
Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQR-----------GIGGRDAAFATELTYGTCR 64
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + + S +D +L +LR G +L+ V +S V A F
Sbjct: 65 ARGLLDAVIGA--AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL ++ ++E G ++ Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153
>gi|15608545|ref|NP_215923.1| Fmu protein (SUN protein) [Mycobacterium tuberculosis H37Rv]
gi|15840865|ref|NP_335902.1| sun protein [Mycobacterium tuberculosis CDC1551]
gi|148661198|ref|YP_001282721.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
gi|148822627|ref|YP_001287381.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
gi|167968446|ref|ZP_02550723.1| fmu protein (sun protein) [Mycobacterium tuberculosis H37Ra]
gi|215411052|ref|ZP_03419860.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
gi|215445594|ref|ZP_03432346.1| fmu protein (sun protein) [Mycobacterium tuberculosis T85]
gi|218753116|ref|ZP_03531912.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
gi|253799543|ref|YP_003032544.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
gi|254231649|ref|ZP_04924976.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
gi|254364290|ref|ZP_04980336.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
gi|254550421|ref|ZP_05140868.1| SUN protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|289554802|ref|ZP_06444012.1| SUN protein [Mycobacterium tuberculosis KZN 605]
gi|289757513|ref|ZP_06516891.1| fmu protein [Mycobacterium tuberculosis T85]
gi|289761566|ref|ZP_06520944.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
gi|294994969|ref|ZP_06800660.1| SUN protein [Mycobacterium tuberculosis 210]
gi|297633963|ref|ZP_06951743.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
gi|297730952|ref|ZP_06960070.1| SUN protein [Mycobacterium tuberculosis KZN R506]
gi|298524913|ref|ZP_07012322.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
gi|306775590|ref|ZP_07413927.1| SUN protein [Mycobacterium tuberculosis SUMu001]
gi|306780738|ref|ZP_07419075.1| SUN protein [Mycobacterium tuberculosis SUMu002]
gi|306788507|ref|ZP_07426829.1| SUN protein [Mycobacterium tuberculosis SUMu004]
gi|306792830|ref|ZP_07431132.1| SUN protein [Mycobacterium tuberculosis SUMu005]
gi|306807307|ref|ZP_07443975.1| SUN protein [Mycobacterium tuberculosis SUMu007]
gi|306967506|ref|ZP_07480167.1| SUN protein [Mycobacterium tuberculosis SUMu009]
gi|306971698|ref|ZP_07484359.1| SUN protein [Mycobacterium tuberculosis SUMu010]
gi|307079408|ref|ZP_07488578.1| SUN protein [Mycobacterium tuberculosis SUMu011]
gi|307083976|ref|ZP_07493089.1| SUN protein [Mycobacterium tuberculosis SUMu012]
gi|313658285|ref|ZP_07815165.1| SUN protein [Mycobacterium tuberculosis KZN V2475]
gi|2829532|sp|P71675|Y1407_MYCTU RecName: Full=Putative methyltransferase Rv1407/MT1451
gi|1542915|emb|CAB02186.1| PROBABLE FMU PROTEIN (SUN PROTEIN) [Mycobacterium tuberculosis
H37Rv]
gi|13881065|gb|AAK45716.1| sun protein [Mycobacterium tuberculosis CDC1551]
gi|124600708|gb|EAY59718.1| fmu protein (sun protein) [Mycobacterium tuberculosis C]
gi|134149804|gb|EBA41849.1| fmu protein (sun protein) [Mycobacterium tuberculosis str. Haarlem]
gi|148505350|gb|ABQ73159.1| Fmu protein [Mycobacterium tuberculosis H37Ra]
gi|148721154|gb|ABR05779.1| fmu protein (sun protein) [Mycobacterium tuberculosis F11]
gi|253321046|gb|ACT25649.1| SUN protein [Mycobacterium tuberculosis KZN 1435]
gi|289439434|gb|EFD21927.1| SUN protein [Mycobacterium tuberculosis KZN 605]
gi|289709072|gb|EFD73088.1| fmu protein (sun protein) [Mycobacterium tuberculosis GM 1503]
gi|289713077|gb|EFD77089.1| fmu protein [Mycobacterium tuberculosis T85]
gi|298494707|gb|EFI30001.1| fmu protein (sun protein) [Mycobacterium tuberculosis 94_M4241A]
gi|308215901|gb|EFO75300.1| SUN protein [Mycobacterium tuberculosis SUMu001]
gi|308326397|gb|EFP15248.1| SUN protein [Mycobacterium tuberculosis SUMu002]
gi|308334896|gb|EFP23747.1| SUN protein [Mycobacterium tuberculosis SUMu004]
gi|308338705|gb|EFP27556.1| SUN protein [Mycobacterium tuberculosis SUMu005]
gi|308346230|gb|EFP35081.1| SUN protein [Mycobacterium tuberculosis SUMu007]
gi|308354824|gb|EFP43675.1| SUN protein [Mycobacterium tuberculosis SUMu009]
gi|308358774|gb|EFP47625.1| SUN protein [Mycobacterium tuberculosis SUMu010]
gi|308362711|gb|EFP51562.1| SUN protein [Mycobacterium tuberculosis SUMu011]
gi|308366378|gb|EFP55229.1| SUN protein [Mycobacterium tuberculosis SUMu012]
gi|323720071|gb|EGB29177.1| SUN protein [Mycobacterium tuberculosis CDC1551A]
gi|326903028|gb|EGE49961.1| SUN protein [Mycobacterium tuberculosis W-148]
gi|328459291|gb|AEB04714.1| SUN protein [Mycobacterium tuberculosis KZN 4207]
Length = 457
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + ++ R D + + +G
Sbjct: 16 ARRAAFETLRAVSARDAYANLVLPALLAQR-----------GIGGRDAAFATELTYGTCR 64
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + + S +D +L +LR G +L+ V +S V A F
Sbjct: 65 ARGLLDAVIGA--AAERSPQAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAGIEF 121
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL ++ ++E G ++ Q
Sbjct: 122 DSARAGFVNGVLRTIAGRDERSWVGELAPDAQ 153
>gi|24378967|ref|NP_720922.1| putative RNA-binding Sun protein; rRNA methylase [Streptococcus
mutans UA159]
gi|24376856|gb|AAN58228.1|AE014894_5 putative RNA-binding Sun protein; possible rRNA methylase
[Streptococcus mutans UA159]
Length = 437
Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +++ AR A+ L + I + Y A + D
Sbjct: 1 MGNKQPTARSGALFVLTE-----------IFDKTAYSNIALRHYLSKHKLSQADRSLLTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ ++ + ++ +L + +++ +P I++E V
Sbjct: 50 LVYGTLTRKITLEWYLAHYIEDRNKLETWIYY---LLMLSLYQILYLDKIPQHAIVNEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEE 158
+A K +NAVL + R++
Sbjct: 107 DLAKSR-NRGAEKLVNAVLRQFLRQKR 132
>gi|257439489|ref|ZP_05615244.1| transcription antitermination factor NusB [Faecalibacterium
prausnitzii A2-165]
gi|257198061|gb|EEU96345.1| transcription antitermination factor NusB [Faecalibacterium
prausnitzii A2-165]
Length = 147
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A + E + + + E + + ++
Sbjct: 6 PRREARENAFLLAFSQTFGDVPLQEAL------------DTNNECGEERPVDVFGQRLLS 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+D LI L W+ RL + ++LR + E++ V+I+E V +
Sbjct: 54 AYYSHSAEVDDLIRDHL-RNWTMERLPRVSLTVLRLALAEMLYGDERKPGVVINEAVELT 112
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ ++ +F+N +L V+R++
Sbjct: 113 KKYGADEDYQFVNGLLGAVAREQ 135
>gi|229168926|ref|ZP_04296643.1| N utilization substance protein B [Bacillus cereus AH621]
gi|228614518|gb|EEK71626.1| N utilization substance protein B [Bacillus cereus AH621]
Length = 114
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
E+ ++ G +D K+ ID I L + W R+ ++ SILR V E+
Sbjct: 18 DEGEETNEFLESLVVGFVDNKEEIDAAIRQNLKK-WKLERISIVDRSILRVAVCEMKYME 76
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P V I+E + IA F + +FIN VL +
Sbjct: 77 EIPHNVTINEAIEIAKTFGDEESRRFINGVLSNI 110
>gi|118469121|ref|YP_887381.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
smegmatis str. MC2 155]
gi|118170408|gb|ABK71304.1| ribosomal RNA small subunit methyltransferase B [Mycobacterium
smegmatis str. MC2 155]
Length = 464
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L +SE + Y A + E D + + +G
Sbjct: 20 ARRVAFDVL-----------RAVSERDAYANLALPAMLRERGIDGRDAAFATELTYGACR 68
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +I R+D +L +LR G +L+ P +S V A F
Sbjct: 69 SLGLLDAVIER--AAGRPTDRIDPVLLDLLRLGTYQLLRTRVEP-HAAVSTTVEQAGIEF 125
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+N VL +S ++E ++ +
Sbjct: 126 DSARAGFVNGVLRTISGRDEQAWIAELAPSAE 157
>gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
Length = 446
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L +DI S Y A + +S + D I++GV+
Sbjct: 3 ARNIAYKVL--LDIEKNS---------NYSNIALNKFLKDSKLTNKDRGLATEIVYGVVA 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K+ +D +I+ K +++ + ILR GV +L+ V +I E V +
Sbjct: 52 NKRTLDYMINKKSKIKV--KKMNHSVKIILRMGVYQLLYLDRVADYGVIDEAVKMMKKI- 108
Query: 139 YGDEPKFINAVLDKVSRKEE 158
F+NA+L +SR+++
Sbjct: 109 DRRSSGFVNAILRNISREKD 128
>gi|282899369|ref|ZP_06307337.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
gi|281195736|gb|EFA70665.1| NusB antitermination factor [Cylindrospermopsis raciborskii CS-505]
Length = 213
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
EL + + + I+ V + + +D +IS L + W +RL I IL+ V
Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRPILDQIISQALVD-WQVTRLAQIDRDILQIAV 166
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E+ VP + I+E V +A + D +FIN VL +V +++
Sbjct: 167 AEMKFME-VPPSIAINEAVELAKRYSGDDGHRFINGVLRRVIDQKQ 211
>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
Length = 435
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q S +I+++ Y E+ + VD F +++G + R
Sbjct: 6 RDLAFQ----------SIQDILND-NAYSNLKINEVINQYNIATVDKALFTELVYGTIKR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + + + +L + + + +P II+E V IA
Sbjct: 55 KMTLDFYLKPFVKTRIK-----GWVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKRRGG 109
Query: 140 GDEPKFINAVLDKVSR 155
+NA+L + +
Sbjct: 110 QHNGNIVNAILRHIFK 125
>gi|164688612|ref|ZP_02212640.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
16795]
gi|164603025|gb|EDQ96490.1| hypothetical protein CLOBAR_02257 [Clostridium bartlettii DSM
16795]
Length = 169
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY--------- 61
+ +R +R ++ +YQ I T++ +E E + +
Sbjct: 3 NIRAKRETSREYLMKLMYQTYISNGDITDLENELEGFLENNQEYIISRYKELVLTYSDRD 62
Query: 62 ---------LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
VD + + + R I+ LI T+ WS +R I +IL+ +
Sbjct: 63 VNLDDVTVNKCVDKAYLTKVCDILRLRIDDINELI-ENNTKNWSINRFSKIDLAILQIAI 121
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
E++ ++P +V I++ + +A + PKFIN +L V + +
Sbjct: 122 AEMLSDLNIPEKVSINQAIDLAKIYCEEKTPKFINGILGSVVDEINKR 169
>gi|284050071|ref|ZP_06380281.1| Fmu, rRNA SAM-dependent methyltransferase [Arthrospira platensis
str. Paraca]
gi|291566504|dbj|BAI88776.1| ribosomal RNA small subunit methyltransferase B [Arthrospira
platensis NIES-39]
Length = 447
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 13/143 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L I G ++ E ++ D +++G R
Sbjct: 6 RQLAFVTLRDIQRRGAFADIVLD-----------EKLRQADLKDADRRLGTELVYGCTRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D +I + + L IL G+ +L ++P ++ V +
Sbjct: 55 RRTLDAIIDRLAKK--PAHQQPPDLRIILHLGLYQLCFSSNIPPSAAVNTTVDLTKVNNL 112
Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
F+N +L + R E S
Sbjct: 113 SGLGGFVNGLLRQYLRLVEAGNS 135
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 16/141 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L ++ E Y + + VD ++ + ++ GV+
Sbjct: 2 KPRKIAYKILQEVL-----------SKEAYANISFNKHLKGRELKEVDRDFIKKLVFGVI 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+RK +D ++S + D L G+ +L+ VP I+E V IA +
Sbjct: 51 ERKYTLDFILSFFVK-----KPADEKSKIFLEMGLYQLLYMDKVPSYAAINETVNIAKNV 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
FINAVL R++E
Sbjct: 106 LGIKRANFINAVLRSYEREKE 126
>gi|290961866|ref|YP_003493048.1| RNA-binding Sun protein [Streptomyces scabiei 87.22]
gi|260651392|emb|CBG74514.1| putative RNA-binding Sun protein [Streptomyces scabiei 87.22]
Length = 452
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A +AL +D ++ + + D +++G + R+
Sbjct: 2 LAFEALRAVDERDAYANLVLPPLLRRARQKEGP----EKFDARDAALATELVYGTLRRQG 57
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
D +I+SC+ +D + +L G +L+ +P +S V +A
Sbjct: 58 TYDAVIASCVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVDLARVVLGDG 114
Query: 142 EPKFINAVLDKVSRKEEIKRSGCVSAI 168
KF+NAVL K+++ + V+
Sbjct: 115 RAKFVNAVLRKIAQHDLDGWLERVAPP 141
>gi|306836202|ref|ZP_07469186.1| N utilization substance protein B [Corynebacterium accolens ATCC
49726]
gi|304567923|gb|EFM43504.1| N utilization substance protein B [Corynebacterium accolens ATCC
49726]
Length = 212
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 1 MTIQDNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ K+D+ H+R AR A LY+ + I+ +
Sbjct: 1 MSDNTAKRDIN--HKRHTARYRARRRAADILYEAENRDVDPVAIVEDRVALA-------R 51
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + ++ +VI+ GV + ID IS L++ W R+ + +ILR V EL+
Sbjct: 52 EDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
VP + E V +A + + +I+AVLD V++
Sbjct: 112 FNPDVPTATAVVEGVELASQYSHDQAAPYIHAVLDDVAQSR 152
>gi|223041028|ref|ZP_03611286.1| transcription antitermination factor NusB [Campylobacter rectus
RM3267]
gi|222877700|gb|EEF12823.1| transcription antitermination factor NusB [Campylobacter rectus
RM3267]
Length = 131
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY ++ CS E E + +
Sbjct: 1 MATRHQVRQAVVSLLYAREMGSCSE------------EFVEEFLEEKKIRNDQRSLALSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
HG+++ +D L+++ L E W + + I ++LR G E+ VII+E +
Sbjct: 49 FHGILEHADGLDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+ + PKFIN VLD +
Sbjct: 107 LGKELGGDSAPKFINGVLDAL 127
>gi|222153508|ref|YP_002562685.1| ribosomal RNA small subunit methyltransferase [Streptococcus uberis
0140J]
gi|222114321|emb|CAR43000.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus uberis 0140J]
Length = 440
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 16/144 (11%)
Query: 12 LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+++ + AR A+ A+ E I + Y A + D
Sbjct: 1 MANNWKREARGKALMAI-----------EDIFDNGAYSNLALNQHLNHQALNAKDKALIT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++G + RK ++ +S + ++ + +L + +L+ VP I+++
Sbjct: 50 EIVYGTVSRKLTLEWHLSHVIEDRNRLDKWVYY---LLMISLYQLLYLDKVPQHAIVNDA 106
Query: 131 VCIAHDFFYGDEP-KFINAVLDKV 153
V IA + KF+NAVL ++
Sbjct: 107 VNIAKNRGNNRGAEKFVNAVLRQL 130
>gi|313901450|ref|ZP_07834907.1| sun protein [Thermaerobacter subterraneus DSM 13965]
gi|313468278|gb|EFR63735.1| sun protein [Thermaerobacter subterraneus DSM 13965]
Length = 488
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y A L S + + +GV R+ +D ++ + RLD +
Sbjct: 58 YVDQALARLLEGSGLPARERALATELAYGVARRQGSLDWALARW--ARRPPERLDPPVRV 115
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
LR G +L +P ++E V + G F+NAVL + +R
Sbjct: 116 ALRLGAYQLWHLDRIPDHAAVAESVELVRRHGPGYAAGFVNAVLRRAAR 164
>gi|300214410|gb|ADJ78826.1| 16S ribosomal RNA m(5)C 967 methyltransferase [Lactobacillus
salivarius CECT 5713]
Length = 445
Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ RL AV+ L +++ G TY A ++ E+ + D +
Sbjct: 1 MKNK--TVRLLAVELLTRVESQG-----------TYSNLALNKVIEENNFSVKDTKLLTT 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ K ++ + + + + + +L + +++ +P + +E +
Sbjct: 48 IVYGVIQHKLTLEYWLEPFIKKANKLQ---LWVKELLLVSLYQMVYLDKIPDRAVFNESI 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+ VL + R
Sbjct: 105 EIAKIKGHTGIRKFVTGVLHSIRRN 129
>gi|312622710|ref|YP_004024323.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203177|gb|ADQ46504.1| sun protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 431
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 16/142 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L++I+ S + + E + + D F ++HGV+
Sbjct: 4 RQAAFFLLFEIEKKKFSGVDSL-----------LEKFHQKLKNEKDRALFVELVHGVLRY 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ID I+ + R + +ILR EL+ +P ++E IA
Sbjct: 53 KNLIDYYINFVAKKGVKDKR----ILNILRVATYELLFLEKIPEYATVNEACEIASKI-N 107
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
F+NA+L + R +
Sbjct: 108 PHLKAFVNAILRNIIRNKNQIE 129
>gi|218132886|ref|ZP_03461690.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
43243]
gi|217991759|gb|EEC57763.1| hypothetical protein BACPEC_00747 [Bacteroides pectinophilus ATCC
43243]
Length = 374
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L + D + I + + + + G ++R
Sbjct: 11 RAVVLDILLENDKNPGHSNLITGQALSKF----------QYLPKSQRAFISRLAEGTIER 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
D LI + ++ ++ +I+R +L SVPV + +E V +A +
Sbjct: 61 SIEEDWLIDHVSSVST--KKMKPVIRNIMRMSAYQLKYMDSVPVSAVCNEAVKLARKRGF 118
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N VL ++R
Sbjct: 119 SSLTGFVNGVLRSLARDIN 137
>gi|94266030|ref|ZP_01289751.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
gi|93453425|gb|EAT03847.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
Length = 487
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 15/146 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+Q L + G +++ AD D +++GV+
Sbjct: 8 RQVALQLLLAQEQSGQPVEQLLEHQLREHPLADGR----------DRRLLEALVYGVLRW 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++ + +++ + + LR G+L+L+ +P I+E +
Sbjct: 58 RGLLDQVVAGY--ARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQ 115
Query: 140 G-DEPKFINAVLDKVSRKEEIKRSGC 164
F+NAVL K + +I+R G
Sbjct: 116 PRWLTGFVNAVLRKAA--ADIERLGR 139
>gi|295696042|ref|YP_003589280.1| sun protein [Bacillus tusciae DSM 2912]
gi|295411644|gb|ADG06136.1| sun protein [Bacillus tusciae DSM 2912]
Length = 486
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 23/168 (13%)
Query: 1 MTIQDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
M+ + RR + AR A + L ++ E Y A
Sbjct: 1 MSPDARAANPVRDPRRRVSGRAGAVSPARRGAFEVL-----------LLVEERRAYSHIA 49
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
++ D I+ G + ++ +D I++ + +RLD ++ LR
Sbjct: 50 LRQVLNRLGADRRDSALATEIVQGTLRWQRWLDEQINA--KSRIPIARLDAVVRVTLRMA 107
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V +L + ++++ V + ++N VL + R+++
Sbjct: 108 VYQLYKLRHCAPHAVVNDAVELVKG-TQPRAASYVNGVLRALEREQQT 154
>gi|323489537|ref|ZP_08094764.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
gi|323396668|gb|EGA89487.1| ribosomal RNA small subunit methyltransferase B [Planococcus
donghaensis MPA1U2]
Length = 450
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 18/146 (12%)
Query: 12 LSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ +++ G R AA L + + Y + +
Sbjct: 1 MKNKKLQGNVRDAAFSIL-----------WAVENKQAYSNLLLHQTIESYGIAAKNRGLL 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I +G + + +D + L +++ + +LR + +++ +P ++ E
Sbjct: 50 TEITYGTLQHQMTLDYYLEPYLKG-----KIESWVKILLRLSLYQIVYLDRIPAHAVVHE 104
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSR 155
V IA +G +N VL V R
Sbjct: 105 AVEIAKRRGHGGVASVVNGVLRSVQR 130
>gi|282901368|ref|ZP_06309293.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
gi|281193647|gb|EFA68619.1| Fmu, rRNA SAM-dependent methyltransferase [Cylindrospermopsis
raciborskii CS-505]
Length = 446
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A AL ++ Y A + D +++G + R
Sbjct: 7 RQIAFTALREV------------HRGAYADIAIDRTLHKFKLSDHDRRLMTELVYGSVRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D +I +K D L IL G+ +L +PV ++ V +A + +
Sbjct: 55 QRSLDAIIDQIADKKSPQQPRD--LRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 112
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N L + R E
Sbjct: 113 PGLTGFVNGFLRQYIRLLE 131
>gi|309810728|ref|ZP_07704536.1| putative ribosomal RNA small subunit methyltransferase B
[Dermacoccus sp. Ellin185]
gi|308435359|gb|EFP59183.1| putative ribosomal RNA small subunit methyltransferase B
[Dermacoccus sp. Ellin185]
Length = 489
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 18/169 (10%)
Query: 1 MTIQDNKKDLKLSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
M ++ + S RR AR AA+ L +D Y ++
Sbjct: 1 MRGAGHRSEQAPSARRRTGDPARSAALAVLRAVDDG------------AYANLEMPKVLT 48
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D + + G + R+ D +I + S ++D ++ ++LR GV +++
Sbjct: 49 RHDLSGRDAAFATELALGTIRRQGFYDRVIETGSGRAPS--QIDPVVLAVLRLGVHQILS 106
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
VPV SE V +A + F+NAVL + ++ ++
Sbjct: 107 MR-VPVHAATSETVALAREHAGSGAAGFVNAVLRRAGERDHETWIADLT 154
>gi|255525650|ref|ZP_05392583.1| sun protein [Clostridium carboxidivorans P7]
gi|296185410|ref|ZP_06853820.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
gi|255510636|gb|EET86943.1| sun protein [Clostridium carboxidivorans P7]
gi|296050244|gb|EFG89668.1| ribosomal RNA small subunit methyltransferase B [Clostridium
carboxidivorans P7]
Length = 442
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV+ L ++ + +I + S D I++G +
Sbjct: 4 ARKTAVKILKEVFYGNSYSNMVIGKELNR-----------SDMNDKDKALVTEIVYGTLK 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K ID +++ + +LD+ + +ILR + ++ +P +++E V +A
Sbjct: 53 YKYTIDTILNYYIKSG--LKKLDVDILNILRISIYQIRYLDKIPEFAVVNEAVELAKR-K 109
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
+ +N VL R I
Sbjct: 110 AVKTARLVNGVLRSYLRSNNI 130
>gi|329121106|ref|ZP_08249737.1| transcription antitermination factor NusB [Dialister micraerophilus
DSM 19965]
gi|327471268|gb|EGF16722.1| transcription antitermination factor NusB [Dialister micraerophilus
DSM 19965]
Length = 136
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R +R A++ LY ++ + Y ++ +I+
Sbjct: 5 KRRYSREYALEVLYANELNPQTEKINSEIY--------------KKLSDSGKQFAESLIN 50
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP--VEVIISEYVC 132
V + + IDLLI + + WS ++L+++ +ILR + E++ VI +E +
Sbjct: 51 SVRENNEEIDLLIKKHIKK-WSINQLNVVDKNILRIAIAEMLFLKDEKQEKNVIFNEAIE 109
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
IA + + KFIN +L+ VS
Sbjct: 110 IAKIYGGKNSFKFINGILESVS 131
>gi|315222002|ref|ZP_07863913.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
anginosus F0211]
gi|315188968|gb|EFU22672.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
anginosus F0211]
Length = 440
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 15/147 (10%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ L ++ AR A+ L E + Y A + +E D
Sbjct: 2 ISLVNKTKTARQTALAVL-----------EAVFSEGAYSNIALNQALLEVPLSSADKGLV 50
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++G + RK ++ +S + ++ D L +L + +++ +P +++E
Sbjct: 51 TEIVYGTVARKITLEWYLSHVIEDRDKL---DSWLYFLLLMSLYQILYLDKIPAHAVVNE 107
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRK 156
V +A KF NAVL + R
Sbjct: 108 AVELAKVRK-KGSEKFANAVLRGLLRD 133
>gi|257468965|ref|ZP_05633059.1| transcription antitermination protein NusB [Fusobacterium ulcerans
ATCC 49185]
gi|317063213|ref|ZP_07927698.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
49185]
gi|313688889|gb|EFS25724.1| N utilization substance protein B [Fusobacterium ulcerans ATCC
49185]
Length = 132
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R +AR + +++ +I +T +I+ Y E + ++ + + ++
Sbjct: 2 SRRLAREELFKLVFEGEIKEENTKDILESYLK---------REEVLQNENEITFIKKYMN 52
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ + I I +T WSF R+ + ++L+ V E++ C P E++I+E V +A
Sbjct: 53 GIAENNDRILKTIEEKITG-WSFERIGNVEKALLKISVYEIL-CEDTPHEIVINEAVELA 110
Query: 135 HDFFYGDEPKFINAVLDKVS 154
+ +FIN VL KV
Sbjct: 111 KMYGDEKTSEFINGVLAKVV 130
>gi|90961592|ref|YP_535508.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|301299300|ref|ZP_07205586.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90820786|gb|ABD99425.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius
UCC118]
gi|300853144|gb|EFK80742.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 445
Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 59/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ RL AV+ L +++ G TY A ++ E+ + D +
Sbjct: 1 MKNK--TVRLLAVELLTRVESQG-----------TYSNLALNKVIEENNFSVKDTKLLTT 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ K ++ + + + + + +L + +++ +P + +E +
Sbjct: 48 IVYGVIQHKLTLEYWLEPFIKKANKLQ---LWVKELLLVSLYQMVYLDKIPDRAVFNESI 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+ VL + R
Sbjct: 105 EIAKIKGHTGIRKFVTGVLHSIRRN 129
>gi|260437316|ref|ZP_05791132.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
gi|292810228|gb|EFF69433.1| ribosomal RNA small subunit methyltransferase B [Butyrivibrio
crossotus DSM 2876]
Length = 443
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R + AL +I+ T ++ E D +D +
Sbjct: 1 MNQNVNTRNIILDALIEINEKDRFTHIVLPEVLKKYQYLDN----------IDRSFISRT 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I G ++RK +D +I+ +++ ++ +ILR +LI V + +E V
Sbjct: 51 ILGTVERKITLDYIINLFSKT--PVNKMKPVIRNILRMSTYQLIYMEGVKDFAVCNEAVR 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ + F+N VL ++R++
Sbjct: 109 LSVKKGFTALKGFVNGVLRTIAREKNKIEM 138
>gi|229552487|ref|ZP_04441212.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
LMS2-1]
gi|229314039|gb|EEN80012.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
LMS2-1]
Length = 139
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ GV+ + +D ++ L + W+ SRL ILR G+ E+ ++P
Sbjct: 46 SYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEAMPEAAA 105
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
I+E + +A + KF+N +L
Sbjct: 106 INEAINLAKRYSDEQSAKFVNGILANFI 133
>gi|237739332|ref|ZP_04569813.1| transcription antitermination protein NusB [Fusobacterium sp.
2_1_31]
gi|229422940|gb|EEO37987.1| transcription antitermination protein NusB [Fusobacterium sp.
2_1_31]
Length = 152
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M ++ K + R + ++ ++ ++ E+ ++ Y + + S
Sbjct: 1 MKEIFGEETKKKKAGIRLVREELFKIVFGVEATESTSEELEKAFDIYLSNNEDFV---ST 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
L++ + + G+ + +I I T+ W++ R+ ++ ++L E ++ +
Sbjct: 58 LSESQLKFLQTSVKGISENYDNIKDTI-KANTQNWAYERIGLVERTLLIIATYEFLKA-N 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P+EV+ +E V +A ++ +F+N +L + +
Sbjct: 116 TPIEVVANETVELAKEYGNEKSYEFVNGILANIGK 150
>gi|319941815|ref|ZP_08016137.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
3_1_45B]
gi|319804748|gb|EFW01615.1| hypothetical protein HMPREF9464_01356 [Sutterella wadsworthensis
3_1_45B]
Length = 173
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 12/177 (6%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQID----IIGCSTTEIISEYETYRFC---ADT 53
MT + +K + R +AR+ A+ YQ + E + +
Sbjct: 1 MT-EAHKPGRQAHAPRHLARVFALLGFYQWIADPTLKAQKIEENLPALLADDEEGTPVED 59
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ D E ++ G + ++ SS + R+ ++ +IL G
Sbjct: 60 LGLTSEDWARCDRELLTTLLSGAIGEHAALEAEFSSFVDR--DLKRVSLVERAILFIGTY 117
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
EL+ C P V+++E + +A F G +F NAVL++V+ K A +
Sbjct: 118 ELLRCPQTPYRVVLNETIELAKHFGSG--YRFTNAVLERVAAKVRAAEFEADHAQKK 172
>gi|51243976|ref|YP_063860.1| SUN protein (Fmu protein) [Desulfotalea psychrophila LSv54]
gi|50875013|emb|CAG34853.1| related to SUN protein (FMU protein) [Desulfotalea psychrophila
LSv54]
Length = 454
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 14/149 (9%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ +R A + L Q+ I+ +L + + ++ G
Sbjct: 2 KTSSRYIAAETLCQVYKKQQPVKPILE-----------KLCQQKQLNPRERSLAMNMVFG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ ++Q++D+L+ T +LD + L G+ +L S+P I++E V
Sbjct: 51 VLRKRQYLDILLRKLSTV--RLKKLDPFVHQALTVGLYQLFFLDSIPESAIVNEAVNSCK 108
Query: 136 -DFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ F+N +L +R++E +G
Sbjct: 109 TAKVHKRLHGFVNGILRNATRQKEALANG 137
>gi|332638217|ref|ZP_08417080.1| 16S rRNA methyltransferase B [Weissella cibaria KACC 11862]
Length = 457
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 15/140 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR AV+ L + G Y ++ D+ +++GV
Sbjct: 15 HNARAMAVRTL-EKIRNG-----------AYSNLQLNNTVKQAELDERDVHLMTTMVYGV 62
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R+ ++ ++ + + +L + ++ VP I E + IA
Sbjct: 63 IQRRMTLEYWLTPFVKKPEKLDAWVRE---LLYISLFQMKFLDKVPTHAIFDEAINIAKR 119
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+ KF+ VL + R+
Sbjct: 120 RGHDGVRKFVTGVLHAIDRE 139
>gi|294783685|ref|ZP_06749009.1| transcription antitermination factor NusB [Fusobacterium sp.
1_1_41FAA]
gi|294480563|gb|EFG28340.1| transcription antitermination factor NusB [Fusobacterium sp.
1_1_41FAA]
Length = 152
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+ R + ++ ++ ++ E+ ++ Y + + S L++ + + G+
Sbjct: 17 RLVREELFKLVFGVEATESTSEELEKAFDIYLSNNEDFV---STLSENQLKFLQTSVKGI 73
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +I I T+ W++ R+ ++ ++L E ++ + P+EV+ +E V +A +
Sbjct: 74 SENYDNIKDTI-KTNTQNWAYERIGLVERTLLIIATYEFLKA-NTPIEVVANETVELAKE 131
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ +F+N +L + +
Sbjct: 132 YGNEKSYEFVNGILANIGK 150
>gi|291562672|emb|CBL41488.1| transcription antitermination factor NusB [butyrate-producing
bacterium SS3/4]
Length = 139
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 26 ALYQIDI--IGCSTTEIISEYETYRFCADTELDVESVY-----LHVDLEWFRVIIHGVMD 78
L+ D ++ +E + E + + D + + +M+
Sbjct: 1 MLFCQDFYPAEEKEEQLERYFEAPKEDVTGEDGKDEILHDPFEKEEDRAYLEKRVEKIME 60
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID I+ E W R+ + +ILR V E+ +P +V I+E V +A F
Sbjct: 61 LIPEIDEKINEI-AEGWRTRRMGKVELTILRLAVFEMKYDEEIPEKVAINEAVELAKKFG 119
Query: 139 YGDEPKFINAVLDKVSRKEE 158
+ P F+N +L K+ +K
Sbjct: 120 GDEAPAFVNGILAKLIQKGN 139
>gi|317124726|ref|YP_004098838.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
gi|315588814|gb|ADU48111.1| NusB antitermination factor [Intrasporangium calvum DSM 43043]
Length = 137
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A+ L++ D G + ++ E + + + +
Sbjct: 1 MSARSKARARALDILFEADQRGLNAEVLLDERLR-----------DPESRAGNNPYTADL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+ R + ID ++ ++ W+ R+ + +ILR G E++ +P I+E V
Sbjct: 50 VRGVVGRWRDIDAALTDY-SQGWTLDRMPAVDRAILRVGAWEVLFNDDIPDAAAIAEAVA 108
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
+A + + P F+N +L ++S
Sbjct: 109 LATELSTDESPGFVNGLLARLS 130
>gi|218961232|ref|YP_001741007.1| putative 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Cloacamonas acidaminovorans]
gi|167729889|emb|CAO80801.1| putative 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Cloacamonas acidaminovorans]
Length = 438
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 30 IDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
++ + T I+ + Y + + D F ++ GV+ +D I
Sbjct: 1 MNFRSEAYTTILKVLKDKEYSDTLLHQRAKKLKNAGEDPALFYNLVKGVIKLYLKLDY-I 59
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+K ++ D+ + +L G+ +L+ +S+P ++E V +A F F+N
Sbjct: 60 LQQYVDKKKYTDTDIKIKVLLYMGLYQLLYLNSIPDYAAVNETVELAKTLFNPQVADFVN 119
Query: 148 AVLDKVSRKEEIKRSGCVS 166
AVL R E+ +
Sbjct: 120 AVLRNYLRNPEVSYPNEPA 138
>gi|39932003|sp|Q9CHN4|NUSB_LACLA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 192
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 27 LYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
L Q + S +E++ + + D + + +F ++ GV+D+K+ ++
Sbjct: 68 LAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPE----YFTQLVDGVLDKKEDLEA 123
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
IS LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +F
Sbjct: 124 NISKYLTKTWSFSRLTLVEQAILQVSSYEILYTE-TPDVVAVNEAVELSKDFSDEKSSRF 182
Query: 146 INAVLDKVSR 155
IN VL +
Sbjct: 183 INGVLTNFLK 192
>gi|320093626|ref|ZP_08025510.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319979414|gb|EFW10892.1| Fmu (Sun) domain protein [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 514
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 12 LSHRR--------GIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
+S RR A R A + L ++ G ++ + A + E
Sbjct: 24 MSQRRYADGYRKLRRADAPRRVAFEVLSEVTSSGAFANIVLPK-------ALRRIRREEP 76
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + ++HG + + +D ++ + LD + +LR G +L++
Sbjct: 77 FDDRDAAFTSELVHGTLRARGRLDWALARHVDR--PLGDLDPRVLDLLRMGAHQLLDMR- 133
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
VP +S V +A + + +NAVL ++R+E
Sbjct: 134 VPDHAAVSATVDVAREHLTDGPVRMVNAVLRALAREE 170
>gi|255323400|ref|ZP_05364531.1| transcription antitermination factor NusB [Campylobacter showae
RM3277]
gi|255299437|gb|EET78723.1| transcription antitermination factor NusB [Campylobacter showae
RM3277]
Length = 131
Score = 73.6 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A V LY ++ CS E E + +
Sbjct: 1 MATRHQVRQAVVSLLYAREMGSCS------------EEFVEEFLEEKKIRNDQRSLALSL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
HG+++ + +D L+++ L E W + + I ++LR G E+ VII+E +
Sbjct: 49 FHGILEHEDELDALLNARLKE-WKINEIGSIERAVLRLGAYEMKFTP-TDKAVIINEGIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
+ + PKFIN VLD +
Sbjct: 107 LGKELGGDSAPKFINGVLDAL 127
>gi|153952373|ref|YP_001398575.1| transcription antitermination protein NusB [Campylobacter jejuni
subsp. doylei 269.97]
gi|166215677|sp|A7H4Z5|NUSB_CAMJD RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|152939819|gb|ABS44560.1| transcription antitermination factor NusB [Campylobacter jejuni
subsp. doylei 269.97]
Length = 132
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + + LY ++ + E+ E + + +
Sbjct: 1 MATRHQVRQSVISLLYAFELNSQN------------NVFVDEILDEKKIRNEQKNFTLNL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
HG++D +ID ++S L + + L + +ILR G EL+ + P ++I+E +
Sbjct: 49 YHGILDNLNNIDETLNSFLNDNQ-ITALGHVERAILRLGAYELLFT-NTPSAIVINEAIE 106
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEE 158
+A + + PKF+N VLD + + ++
Sbjct: 107 LAKELANDNSPKFMNGVLDALIKAKK 132
>gi|293400615|ref|ZP_06644760.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305641|gb|EFE46885.1| transcription antitermination factor NusB [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 126
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 16/142 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R R A+ LYQ ++ E E+ + +
Sbjct: 1 MAVSRHELREKAMTCLYQHFLLNKDIKE---------------TVFENNDSNEIDPFLYT 45
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + ++ +I+ L E W+F RL + +IL EL P ++I+E V
Sbjct: 46 VTIDAIKYEEDYIQMINEALREDWTFERLGYVEKAILIMAACELD-MEIAPKPIVINEAV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A + + K IN VLD++
Sbjct: 105 TLAKKYCDEETYKLINGVLDRL 126
>gi|261866823|ref|YP_003254745.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412155|gb|ACX81526.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 451
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 10 LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+K S + A R AAVQ L+Q+ G S + ++ D + V
Sbjct: 1 MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLLP-------------DAQVVIK 47
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
DL + I GV ++ +I+ + + I+ +L G+ +++ +P
Sbjct: 48 AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + E V A + +NAVL + R++E
Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140
>gi|209524134|ref|ZP_03272685.1| sun protein [Arthrospira maxima CS-328]
gi|209495509|gb|EDZ95813.1| sun protein [Arthrospira maxima CS-328]
Length = 458
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 13/143 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L I G ++ E ++ D +++G R
Sbjct: 6 RQLAFVTLRDIQRRGAFADLVLD-----------EKLRQADLKDADRRLGTELVYGCTRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D +I + + L IL G+ +L ++P ++ V +
Sbjct: 55 RRTLDAIIDRLAKK--PAHQQPPDLRIILHLGLYQLSFSTNIPPSAAVNTTVDLTKVNHL 112
Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
F+N +L + R E S
Sbjct: 113 SGLGGFVNGLLRQYLRLLEAGNS 135
>gi|227503547|ref|ZP_03933596.1| transcription antitermination protein NusB [Corynebacterium
accolens ATCC 49725]
gi|227075583|gb|EEI13546.1| transcription antitermination protein NusB [Corynebacterium
accolens ATCC 49725]
Length = 211
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 13/161 (8%)
Query: 1 MTIQDNKKDLKLSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M+ K+D+ H+R AR A LY+ + I+ +
Sbjct: 1 MSDNTAKRDIN--HKRHTARYRARRRAADILYEAENRDVDPVAIVEDRVALA-------R 51
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + ++ +VI+ GV + ID IS L++ W R+ + +ILR V EL+
Sbjct: 52 EDRHAVAPIADYTKVIVQGVAEELDAIDDTISRYLSQNWELHRIPAVDRAILRLSVWELL 111
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
VP + E V +A + + +I+AVLD V++
Sbjct: 112 FNPDVPTATAVVEGVELASQYSHDQAAPYIHAVLDDVAQSR 152
>gi|260578784|ref|ZP_05846691.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
gi|258603082|gb|EEW16352.1| RNA methyltransferase Sun [Corynebacterium jeikeium ATCC 43734]
Length = 513
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 19/169 (11%)
Query: 4 QDNKKDLKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
Q + + K R R L + + A + E
Sbjct: 25 QQRRPEHKQRKSRSRGSGDKVRDVVFGVL-----RDVTVD------GAFGNLALPKALRE 73
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D + + +G + + +D +I R+D + LR G +++
Sbjct: 74 AGIKGRDAAFATELTYGTLRARGLLDAIIED--AAGRKIERIDSVALDALRLGAYQIL-R 130
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V ++ V + F G F+N VL ++RK+ V+
Sbjct: 131 TRVENHAAVNTSVELVKAFGAGQASGFVNGVLRALTRKKPETWVERVAP 179
>gi|326801392|ref|YP_004319211.1| NusB antitermination factor [Sphingobacterium sp. 21]
gi|326552156|gb|ADZ80541.1| NusB antitermination factor [Sphingobacterium sp. 21]
Length = 315
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 12/151 (7%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV-------DLEWFRVIIHGVM 77
Q + I + +++ D E L D E+ +
Sbjct: 162 QIFDEHFINWTTDKDVLQALLAKTLKNFNSEDPEKNKLAQLCPNWVDDKEFIVDLFRLTT 221
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + I S T+ W R+ +I ++R + EL+ S+PV+V I+EY+ I+ +F
Sbjct: 222 RHGEDYQIYI-SGKTKNWEADRIALIDTLLMRMAITELLNFSSIPVKVTINEYIEISKEF 280
Query: 138 FYGDEPKFINAVLDKV----SRKEEIKRSGC 164
FIN +LDK+ ++ +I++ G
Sbjct: 281 STPKSNSFINGILDKILIELQKEGKIRKFGR 311
>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
Length = 435
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y ++ VD + +++G + RK +D + + ++ +
Sbjct: 21 AYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQT-----KIKGWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + VP II+E V IA +NA+L ++ R
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIMR 125
>gi|289551003|ref|YP_003471907.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
Length = 435
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y ++ VD + +++G + RK +D + + ++ +
Sbjct: 21 AYSNLEINDVLSSQDLSAVDKGLYTELVYGTIKRKFTLDYYLRPFVQT-----KIKGWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + VP II+E V IA +NA+L ++ R
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKHRGGPHNGNIVNAILRQIMR 125
>gi|88856227|ref|ZP_01130887.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
gi|88814546|gb|EAR24408.1| putative RNA-binding Sun protein [marine actinobacterium PHSC20C1]
Length = 454
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ + + ++ + D + +G +
Sbjct: 7 ARRVALDVIMAVRESDAYANLLLPVHLDRA-----------KLSPADAGLATELTYGTLR 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ + D +I+ S++D + +LR +L+ VP + E V +A
Sbjct: 56 MQGYYDAVIAQ--AAGRPVSKIDPPVLDVLRLATHQLLSMR-VPSHAAVDESVRLAKTIG 112
Query: 139 YGDEPKFINAVLDKV 153
F+NAVL +
Sbjct: 113 TRSAVGFVNAVLRAI 127
>gi|227833206|ref|YP_002834913.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
700975]
gi|262184192|ref|ZP_06043613.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
700975]
gi|259514808|sp|C3PGM1|NUSB_CORA7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|227454222|gb|ACP32975.1| N utilization substance protein B [Corynebacterium aurimucosum ATCC
700975]
Length = 176
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 16/155 (10%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
L++ + I+ + + + ++ R I+ G + ID
Sbjct: 23 DILFEAESRDVDPVAIVEDRVELARDPENGVA-------PIADYTREIVSGAAEELDAID 75
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
I+ L+ +WS R+ + +I+R V E++ VP + E V +A ++
Sbjct: 76 DAIARYLSSEWSLERIPAVDRAIMRVSVWEILFNADVPNATALVEGVELASEYSNDKAAP 135
Query: 145 FINAVLDKVSRKE---------EIKRSGCVSAITQ 170
+I+AVLD V + + + + +
Sbjct: 136 YIHAVLDDVIQAQSADSPMAPASAEEPAEPAETAE 170
>gi|227549190|ref|ZP_03979239.1| transcription antitermination protein NusB [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078750|gb|EEI16713.1| transcription antitermination protein NusB [Corynebacterium
lipophiloflavum DSM 44291]
Length = 188
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 7/146 (4%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V L++ + ++ + + E+ R II GV ++ I
Sbjct: 18 VDILFEAETRDIDPVAVVEDRIELAQDPQNAVA-------PIAEYTREIITGVAEKLDDI 70
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D + L++ W RL + ILR E++ V + IS + +A ++ P
Sbjct: 71 DDAVEQFLSQDWELGRLPAVDRQILRVAAWEILFNDDVAAPIAISNALGMAEEYAGHAAP 130
Query: 144 KFINAVLDKVSRKEEIKRSGCVSAIT 169
+I+AVLD V + + S + +
Sbjct: 131 PYIHAVLDDVVKTLPVPESAPPAEQS 156
>gi|157373174|ref|YP_001471774.1| sun protein [Shewanella sediminis HAW-EB3]
gi|157315548|gb|ABV34646.1| sun protein [Shewanella sediminis HAW-EB3]
Length = 426
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + + + + D + +GVM
Sbjct: 4 RALAAKVVFQVLEKGISLSVALPDQQRHLE------------SGKDKALMAELCYGVMRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+S C+++ IL +L G +L +P ISE +
Sbjct: 52 LPQLDKLVSDCMSK--PLKGKQRILHQLLLVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127
>gi|320105842|ref|YP_004181432.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
gi|319924363|gb|ADV81438.1| NusB/RsmB/TIM44 [Terriglobus saanensis SP1PR4]
Length = 419
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 14/145 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR AA L+++ + +++ + D ++ G
Sbjct: 9 SAARTAAFTILHRVASGKGHSDDLL------------HTMAVNALSSEDRNLTTTLVLGT 56
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + ID ++ + F + + LR G +L+ +P ++E V +A
Sbjct: 57 LRWQLAIDSILRPY--LQRPFQEMPAPVLLALRLGTFQLLLLDRIPDHAALNESVELARA 114
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
+NAVL +V R+ + +
Sbjct: 115 NGAPHAAGMVNAVLRRVQREGDALK 139
>gi|257463858|ref|ZP_05628244.1| transcription antitermination protein NusB [Fusobacterium sp. D12]
gi|317061389|ref|ZP_07925874.1| N utilization substance protein B [Fusobacterium sp. D12]
gi|313687065|gb|EFS23900.1| N utilization substance protein B [Fusobacterium sp. D12]
Length = 138
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++ R AR + ++Q +I G S + + L E V +
Sbjct: 1 MREKMTRREAREELFKWIFQTEIQGNSMEKAFEY---------SSLREEIEKDEVTKLFL 51
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
G+ + ++ I+ I + +T+ W FSR+ + S+L+ V E+ +PVE+I++E
Sbjct: 52 ERYRKGLAEHREEIETKIQAAMTD-WDFSRIGYVEKSLLKLAVYEMYFED-LPVEIIVNE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V IA + +FIN VL KV + ++
Sbjct: 110 AVEIAKIYGDVKTHEFINGVLAKVIKMKQ 138
>gi|226226881|ref|YP_002760987.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
gi|226090072|dbj|BAH38517.1| antitermination protein NusB [Gemmatimonas aurantiaca T-27]
Length = 157
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
RG AR A+QALY D+ + + I+ T + + + + +
Sbjct: 24 METRGRAR--ALQALYAADLRDLTQVKRIA----------TTVFDDLAIDPAERLFASRL 71
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
I V DR +D + W RL I S+LR EL PV+V++ E V
Sbjct: 72 IATVADRGAVLDAALVEVTAN-WRLERLGAIERSVLRLAAAELA-REETPVKVVLQEAVH 129
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
+A + +F+N VLD +R+
Sbjct: 130 LAERYGTERSARFVNGVLDAYARRL 154
>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
Length = 428
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 49/150 (32%), Gaps = 18/150 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + I Y E+ E+ +D F I++G + R
Sbjct: 6 RSLAFDTI-----------QDILNEGAYSNLRINEVLSENELNAMDKALFTEIVYGTVKR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + K + +L + + + VP II+E V IA +
Sbjct: 55 KYTLDFYLKPFVKTKIK-----AWVRQLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGG 109
Query: 140 GDEPKFINAVLDKVSRKE--EIKRSGCVSA 167
+N +L + R + +
Sbjct: 110 YHNGNVVNGILRTMMRSDLPDFNEIADPKK 139
>gi|229075890|ref|ZP_04208866.1| N utilization substance protein B [Bacillus cereus Rock4-18]
gi|228707205|gb|EEL59402.1| N utilization substance protein B [Bacillus cereus Rock4-18]
Length = 114
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
E+ ++ G +D K+ ID I L + W R+ ++ SILR V E+
Sbjct: 18 DEGEETNEFLESLVVGFVDNKEEIDAAIRQNLKK-WKLERISIVDRSILRVAVYEMKYME 76
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+P V I+E + IA F + +FIN VL +
Sbjct: 77 EIPHNVTINEAIEIAKTFGDEESRRFINGVLSNI 110
>gi|22297753|ref|NP_681000.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
gi|22293930|dbj|BAC07762.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 442
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L + Y A ++ D +++G +
Sbjct: 5 ARRLALDTL----------ERVAKG--AYADVALHQVLQRYALHGSDRTLVTELVYGTIR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+++ +D LI + + +LR G+ +L +P + V +
Sbjct: 53 QQRTLDTLIQGFCRQLPPL-----PVQLVLRLGLYQLRYLDRIPAHAAVHSSVELVKQIG 107
Query: 139 YGDEPKFINAVLDKVSR 155
K +N VL + SR
Sbjct: 108 LEGFAKLVNGVLRRYSR 124
>gi|222151048|ref|YP_002560202.1| hypothetical protein MCCL_0799 [Macrococcus caseolyticus JCSC5402]
gi|222120171|dbj|BAH17506.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 434
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 16/141 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ R A++ L + + Y E + VD +++G
Sbjct: 2 KHNVRSVALEIL-----------DAVLTEGAYSNLLINEAIKKGYVEPVDRALLTELVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ + + + ++ + + + VP II+E V I
Sbjct: 51 TLQRKLTLEFYAAPYIKTNIK-----GWMRRLILMSIYQSVYLDKVPDHAIINEAVEITK 105
Query: 136 DFFYGDEPKFINAVLDKVSRK 156
+NA+L R
Sbjct: 106 RRGSMGGANTVNAILRNFQRN 126
>gi|19704937|ref|NP_602432.1| transcription antitermination protein NusB [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296329192|ref|ZP_06871693.1| transcription antitermination factor NusB [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|22095941|sp|Q8RII1|NUSB_FUSNN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|19712836|gb|AAL93731.1| N utilization substance protein B [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153548|gb|EFG94365.1| transcription antitermination factor NusB [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 153
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M +++ K +AR + ++ ++ ++ E+ ++ Y ++
Sbjct: 1 MNKNFEEQEKKAKGGVRLAREEVFKLVFGVEATESASEELKQAFDIY---LQNSEELIGT 57
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
LE+ + I G+ +I +I T+ W++ R+ ++ ++L E I +
Sbjct: 58 LNENQLEFLKSSIDGIAKNYDNIKDIIKKN-TQNWAYERIGVVERALLIVATYEFIF-KN 115
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P+EVI +E + +A ++ +F+N +L + + ++
Sbjct: 116 APIEVIANEIIELAKEYGNEKSYEFVNGILANIEKSKK 153
>gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ST398]
Length = 435
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|300173591|ref|YP_003772757.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
gasicomitatum LMG 18811]
gi|299887970|emb|CBL91938.1| ribosomal RNA small subunit methyltransferase B [Leuconostoc
gasicomitatum LMG 18811]
Length = 453
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/162 (13%), Positives = 61/162 (37%), Gaps = 20/162 (12%)
Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S +R + R+ AVQ L + Y ++ + D
Sbjct: 1 MSDKRVYSDNPRVLAVQTL------------AKIKNGAYSNLQLNQVIKQHQLSEADKRL 48
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++GV+ + + ++ + + ++D + +L + + ++ +P I +
Sbjct: 49 LTTLVYGVIQHRMTFEYWLAPFVGD----KKIDAWVRELLYSAIFQMKFLDKIPEHAIFN 104
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
E + +A + K++ A+L + R+ ++ + Q
Sbjct: 105 ESIEVAKILGHVGTGKYVTAILHNIGRQG-LRNISEIKEPIQ 145
>gi|257068774|ref|YP_003155029.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
gi|256559592|gb|ACU85439.1| tRNA/rRNA cytosine-C5-methylase [Brachybacterium faecium DSM 4810]
Length = 551
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 14/163 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ + S R +R A++ L ++ E ++Y L
Sbjct: 51 SASRPAERSRRSTPSRQVALEGL-----------RLVREEDSYANLVLPRLLRSHRVSGR 99
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + +G + + +D ++++C+ +D L +LR G +L++ P
Sbjct: 100 DAAFTTELFYGSLRAQGRLDAILTACVDR--PLEEVDPALRDVLRLGAYQLLDMSVAP-H 156
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
SE V +A F+NAVL +V K+ + V+
Sbjct: 157 AATSETVALARAEVGAGGASFVNAVLRRVGEKDLPQWIAEVAP 199
>gi|293391667|ref|ZP_06636001.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952201|gb|EFE02320.1| methionyl-tRNA formyltransferase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 451
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 23/156 (14%)
Query: 10 LKLSHRRGIA-------RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+K S + A R AAVQ L+Q+ G S + ++ D + V
Sbjct: 1 MKTSKAKTSAETTALSARTAAVQILFQVLEQGKSLSSLLP-------------DAQVVIK 47
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
DL + I GV ++ +I+ + + I+ +L G+ +++ +P
Sbjct: 48 AQDLPLLQEICFGVCRVLPRLEQIIAQLVDK--PLRGKKRIVHCLLLVGLYQILYTR-IP 104
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + E V A + +NAVL + R++E
Sbjct: 105 VYAAVDEIVNTAKNLQLQSFQGLVNAVLRRFLREQE 140
>gi|282895327|ref|ZP_06303529.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
gi|281199633|gb|EFA74493.1| Fmu, rRNA SAM-dependent methyltransferase [Raphidiopsis brookii D9]
Length = 465
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A AL ++ Y A + D +++G + R
Sbjct: 26 RQIAFTALREV------------HRGAYADIAIDRTLQKFKLSDHDRRLMTELVYGSVRR 73
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D +I +K + L IL G+ +L +PV ++ V +A + +
Sbjct: 74 QRSLDAIIDQIADKKS--QQQPRDLRCILHLGLYQLRYQQKIPVSAAVNTTVQLAKENGF 131
Query: 140 GDEPKFINAVLDKVSRKEE 158
F+N L + R E
Sbjct: 132 PGLTGFVNGFLRQYIRLLE 150
>gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
Length = 435
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNKIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
Length = 435
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|291520794|emb|CBK79087.1| transcription antitermination factor NusB [Coprococcus catus GD/7]
Length = 131
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 10/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ D + + + ++++
Sbjct: 3 RRELREHIFRLLFRRDFFPEEEMKEQEAFYIEYL---------ADPEQKEVDYIVQKTEK 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+M +D +++ + W R+ + +I+R V E+ +PV V I+E V +A
Sbjct: 54 IMAMIPELDTMVNEH-SVGWQTERMGKVDLTIIRLAVYEMKYDDDIPVSVAINEAVELAK 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + P FIN VL K+
Sbjct: 113 RYGSENSPAFINGVLAKMI 131
>gi|149173494|ref|ZP_01852124.1| sun protein [Planctomyces maris DSM 8797]
gi|148847676|gb|EDL62009.1| sun protein [Planctomyces maris DSM 8797]
Length = 477
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 13/139 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A L + ++ + ++E D I GV
Sbjct: 31 RSARQLAFFLLEEYRRTDQFISDSMQQWERRI-----------DLSSADWRLAMEISIGV 79
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R+ +D +I S LT +++ L ++L+ G +L+ +P +SE V +A
Sbjct: 80 VRRQLTLDTIIESQLTR--PREKVEAPLWTLLQIGAYQLVMLDQIPDHAAVSETVELAGK 137
Query: 137 FFYGDEPKFINAVLDKVSR 155
K +NA+L +SR
Sbjct: 138 LQRVRWKKMVNAILRSISR 156
>gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
Length = 435
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + I I G Y E+ ++ VD F +++G + R
Sbjct: 6 RAHAFETIQHILIEG-----------AYSNLKINEVLSSNIIADVDRNLFTELVYGTIKR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D ++ + ++ + +L + + + VP II+E V IA
Sbjct: 55 KYTLDYILKPFVKT-----KIKGWVRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGG 109
Query: 140 GDEPKFINAVLDKVSR 155
+N +L + R
Sbjct: 110 HHNGNIVNGILRSMMR 125
>gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
Length = 435
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|75910625|ref|YP_324921.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
gi|75704350|gb|ABA24026.1| Fmu, rRNA SAM-dependent methyltransferase [Anabaena variabilis ATCC
29413]
Length = 449
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 14/143 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A AL D+ + T++ A ++ +D +++G
Sbjct: 2 TNSRQIAFIAL--RDVHKGAYTDV----------ALDRALQKANLSDIDRRLVTELLYGS 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D +I +K + L SIL G+ +L +P ++ V +A D
Sbjct: 50 VRRQRTLDFIIDQLAKKKS--HQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+ F+N +L + R E
Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEA 130
>gi|17228315|ref|NP_484863.1| sun protein [Nostoc sp. PCC 7120]
gi|17130165|dbj|BAB72777.1| sun protein [Nostoc sp. PCC 7120]
Length = 449
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 14/143 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A AL D+ + T++ A ++ +D +++G
Sbjct: 2 TNSRQIAFIAL--RDVHKGAYTDV----------ALDRALQKANLSDIDRRLVTELLYGS 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D +I +K + L SIL G+ +L +P ++ V +A D
Sbjct: 50 VRRQRTLDFIIDQLAKKKS--HQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAKD 107
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+ F+N +L + R E
Sbjct: 108 NGFAGLTGFVNGLLRQYIRLAEA 130
>gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 435
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|329767039|ref|ZP_08258567.1| transcription antitermination factor NusB [Gemella haemolysans
M341]
gi|328837764|gb|EGF87389.1| transcription antitermination factor NusB [Gemella haemolysans
M341]
Length = 131
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A + L+Q++ E++ + + +
Sbjct: 1 MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI---------------YVNKT 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++++K ID +IS+ L + W RL + ILR E++ +P +V I+E V
Sbjct: 46 LTEIIEKKDEIDEVISNNLKD-WKLERLSKMDRQILRISAYEILYSD-IPYKVSINEAVE 103
Query: 133 IAHDFF-YGDEPKFINAVLDKVSRK 156
++ + + KFIN VL +
Sbjct: 104 LSKKYSEKDESYKFINGVLKGIVEN 128
>gi|282895593|ref|ZP_06303727.1| NusB antitermination factor [Raphidiopsis brookii D9]
gi|281199433|gb|EFA74297.1| NusB antitermination factor [Raphidiopsis brookii D9]
Length = 213
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
EL + + + I+ V + + +D +IS L + W +RL I IL+ V
Sbjct: 108 PELIQLANQDKEVRNYAKEIVVTVDENRTILDQIISQALVD-WQVTRLAQIDRDILQIAV 166
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E+ VP + I+E V +A + D +FIN VL +V+ +++
Sbjct: 167 AEMKFME-VPPSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKQ 211
>gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
Length = 435
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|227890677|ref|ZP_04008482.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
gi|227867615|gb|EEJ75036.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus salivarius ATCC
11741]
Length = 445
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ RL AV+ L +++ G TY A ++ E+ D +
Sbjct: 1 MKNK--TVRLLAVELLTRVESQG-----------TYSNLALNKVIEENNLSVKDTKLLTT 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++GV+ K ++ + + + + + +L + +++ +P + +E +
Sbjct: 48 IVYGVIQHKLTLEYWLEPFIKKANRLQ---LWVKELLLVSLYQMVYLDKIPDRAVFNESI 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA + KF+ VL + R
Sbjct: 105 EIAKIKGHTGIRKFVTGVLHSIRRN 129
>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
Length = 435
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
Length = 435
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
Length = 435
Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|149370659|ref|ZP_01890348.1| putative N utilization substance protein [unidentified eubacterium
SCB49]
gi|149356210|gb|EDM44767.1| putative N utilization substance protein [unidentified eubacterium
SCB49]
Length = 339
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
++ L + D E+ + V+ ++ + ++ T W R+ I I++ G
Sbjct: 221 ESSLIPDLYKNEDDREYATNLFRKVVLNEERLSNMV-DGKTPNWDQDRIADIDLIIIKMG 279
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK----EEIKRSGC 164
+ E + S+P I+EY+ I+ ++ FIN +LDK+ ++ +E+ + G
Sbjct: 280 IAEFLYFPSIPTRATINEYLEISKEYSTPKSSIFINGILDKIVKELTASKELNKIGR 336
>gi|258511305|ref|YP_003184739.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478031|gb|ACV58350.1| sun protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 451
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QAL +++ G + A E + D I +G + R
Sbjct: 6 RRRAYQALIRVERDG-----------AFLNAALQEALAGAGVDERDRALATEIAYGTLRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L+S + S+LD + ILR G ++ + VP ++ V +A
Sbjct: 55 QITLDRLLSPL--VRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAAANDAVELAKRHR- 111
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+NAVL + + + +
Sbjct: 112 PQAAALVNAVLRRYAERAQDWE 133
>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
N315]
gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|156721673|dbj|BAF78090.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
Length = 461
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 16 RGIARLAAVQALYQID-IIGCSTTEIISEYET--YRFCADTELDVESVYLHVDLEWFRVI 72
+ +R Y I+ + + I Y E+ E+ +D F I
Sbjct: 18 KHTSREET----YMIENVRSLAFDTIQDILNEGAYSNLRINEVLSENELNAMDKALFTEI 73
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
++G + RK +D + + K + +L + + + VP II+E V
Sbjct: 74 VYGTVKRKYTLDFYLKPFVKTKIK-----AWVRQLLWMSIYQYVYLDKVPNHAIINEAVE 128
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE--EIKRSGCVSA 167
IA + +N +L + R + +
Sbjct: 129 IAKERGGYHNGNVVNGILRTMMRSDLPDFNEIADPKK 165
>gi|241889927|ref|ZP_04777225.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
10379]
gi|241863549|gb|EER67933.1| transcription antitermination factor NusB [Gemella haemolysans ATCC
10379]
Length = 131
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A + L+Q++ E++ + + +
Sbjct: 1 MKSRHELREAVFKILFQVENTELDFIELLDLEQEEISTSI---------------YVNKT 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++++K+ ID +IS+ L + W RL + ILR E++ +P +V I+E V
Sbjct: 46 LTEILEKKEEIDEIISNNLKD-WKLERLSKMDRQILRISAYEILYSD-IPYKVSINEAVE 103
Query: 133 IAHDFF-YGDEPKFINAVLDKVSRK 156
++ + + KFIN VL +
Sbjct: 104 LSKKYSEKDESYKFINGVLKGIVEN 128
>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
gi|169293384|gb|EDS75517.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
Length = 481
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 20/144 (13%)
Query: 19 ARLAAVQAL--YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L Y + Y E S D + I++G
Sbjct: 66 AREVALEILLKYHNEHS-------------YLNITLNEYLKNSTLSRNDKDLVTRIVYGT 112
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +++ + + ++ IL + +LI VP II E V +A
Sbjct: 113 VQNMIYLEYQLEPYIKN----KKVKSREKMILLMSLYQLIFLDKVPEYAIIDEAVKLAKK 168
Query: 137 FFYGDEPKFINAVLDKVSRKEEIK 160
+ KF+NA+L R + K
Sbjct: 169 KNF-YAGKFVNAILRNYLRNGKRK 191
>gi|163787968|ref|ZP_02182414.1| putative N utilization substance protein [Flavobacteriales
bacterium ALC-1]
gi|159876288|gb|EDP70346.1| putative N utilization substance protein [Flavobacteriales
bacterium ALC-1]
Length = 303
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + + + + I S T W RL + +L+ + E + S
Sbjct: 194 KDEDDLVYAKDLFKKTLLNGSKFSEEI-SAKTTNWDSERLASLDGVLLKMALCEFQKFSS 252
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+P +V I+EY+ IA + FIN +LDKV ++ + K
Sbjct: 253 IPYKVTINEYLEIAKAYSTPKSSLFINGILDKVVKEYQSK 292
>gi|288926808|ref|ZP_06420717.1| NusB family protein [Prevotella buccae D17]
gi|288336437|gb|EFC74814.1| NusB family protein [Prevotella buccae D17]
Length = 320
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ + D E+ R + + + S + W FSRL + I++ +
Sbjct: 170 NQELLPEYKDEEDREFARKLFRATILNADQYQRYM-SDASRNWDFSRLAYMDVVIMQIAI 228
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ +PV V I+EYV +A + +IN +LD ++R
Sbjct: 229 AEMLTFPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 271
>gi|210617187|ref|ZP_03291454.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
gi|210149462|gb|EEA80471.1| hypothetical protein CLONEX_03676 [Clostridium nexile DSM 1787]
Length = 430
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + + G ++R +D +I+ +++ ++ +I+R+ V ++ S
Sbjct: 16 LDKKERAFITRVTEGTLERMIELDYIINQFSKV--KVNKMKPVIRNIIRSAVYQMKYMDS 73
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VP +E V +A + + F+N +L + R E
Sbjct: 74 VPNSAACNEAVKLAVKKGFVNLKGFVNGLLRNIDRNLE 111
>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 436
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +II++ + Y ++ + D + +++G + RK +D L+ + K
Sbjct: 13 ETIQDIIND-KAYSNIIINDVLSNNELNRADKGLYTELVYGTLKRKYTLDYLLKPFVQTK 71
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ +L + + + +P II+E V IA +N +L +
Sbjct: 72 LK-----GWVRQLLWMSIYQYVYLDKIPEHAIINEAVEIAKYKGGPHNGNVVNGILRNIM 126
Query: 155 R 155
R
Sbjct: 127 R 127
>gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2]
gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
Length = 435
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKFTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|227530540|ref|ZP_03960589.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
gi|227349546|gb|EEJ39837.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus vaginalis
ATCC 49540]
Length = 449
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A +L E + + + Y E D I++G +
Sbjct: 8 NARELAFASL-----------ERVRKTKAYSNLQVDETLRRHELKPADQRLVTTIVYGTL 56
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ ++ + +LD + ++L + VP + E + IA
Sbjct: 57 QHQLTLEYWL----KSLTPGKQLDPWVETLLLTAFYQYNYLDRVPNWAVTDETIKIAKRR 112
Query: 138 FYGDEPKFINAVLDKVSRK 156
KF+ VL RK
Sbjct: 113 GNPGIRKFVTGVLHSALRK 131
>gi|260771086|ref|ZP_05880014.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
gi|260613975|gb|EEX39166.1| ribosomal RNA small subunit methyltransferase B [Vibrio furnissii
CIP 102972]
Length = 426
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAAQVLFQVVDKGQSLSMALP-------------AAQQNIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + ++ + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESIANALMDS--PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R ++ + +S
Sbjct: 108 PRLRGLINAVLRNYQRNQDALDTEAMS 134
>gi|262282216|ref|ZP_06059985.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
2_1_36FAA]
gi|262262670|gb|EEY81367.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
2_1_36FAA]
Length = 437
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ RR AR A++ L ++ G + A + + D
Sbjct: 1 METRRKSARQVALEVLEEVFDQG-----------AFSNIALNKALKKVQLSQQDKSLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ IL + +++ +P +I E V
Sbjct: 50 LVYGTVARKLTLEWYLSHLIEDRDKLDSWLYILLL---LSLYQMLYLDKIPNHALIHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
+A KF+NA+L ++ R+
Sbjct: 107 ELAKKRKL-GSDKFVNAILRRIERE 130
>gi|256372479|ref|YP_003110303.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
gi|256009063|gb|ACU54630.1| NusB antitermination factor [Acidimicrobium ferrooxidans DSM 10331]
Length = 145
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 22/135 (16%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ LY+ D G + +++ E + R I G+ +R
Sbjct: 16 RERVLELLYEADTKGEAPADLLRGDE--------------------PAFIRERIRGLTER 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +++ W RL I +ILR EL+E S P V I+E V +A +
Sbjct: 56 RSEIDAQLTAH-VIGWQLERLAPIDRAILRLATAELLEA-STPPSVAIAEAVKLADRYST 113
Query: 140 GDEPKFINAVLDKVS 154
F+N VL ++
Sbjct: 114 ERSAAFVNGVLASIA 128
>gi|290581015|ref|YP_003485407.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
gi|254997914|dbj|BAH88515.1| putative RNA-binding Sun protein [Streptococcus mutans NN2025]
Length = 440
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + D +++G + RK ++ ++ + ++
Sbjct: 27 AYSNIALRHYLSKHKLSQADRSLLTELVYGTLTRKITLEWYLAHYIEDRNKLETWIYY-- 84
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L + +++ +P I++E V +A K +NAVL + R++
Sbjct: 85 -LLMLSLYQILYLDKIPQHAIVNEAVDLAKSR-NRGAEKLVNAVLRQFLRQKR 135
>gi|152977800|ref|YP_001343429.1| sun protein [Actinobacillus succinogenes 130Z]
gi|150839523|gb|ABR73494.1| sun protein [Actinobacillus succinogenes 130Z]
Length = 462
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q + Q+ G S + +I + + DL + I G+
Sbjct: 29 RAAAAQIILQVLDQGKSLSALIP-------------ETQLKLKPQDLPLLQEICFGICRV 75
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + I+ +L G+ +++ +P I+E V A +
Sbjct: 76 LPRLEWIIRLLMDK--PLKGKTRIVHCLLLVGLYQILYTR-IPQHAAINETVNAAKELKS 132
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ +N VL + R++E
Sbjct: 133 DNFRGLLNGVLRRFLREQE 151
>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
Length = 435
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|298492855|ref|YP_003723032.1| sun protein ['Nostoc azollae' 0708]
gi|298234773|gb|ADI65909.1| sun protein ['Nostoc azollae' 0708]
Length = 446
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A AL ++ Y A + + D +++G
Sbjct: 2 TNPRQLAFIALKEVHKG------------AYADVALDRVLQKFKLPDNDRRLMTELVYGS 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D LI T+ + L +IL G +L +PV ++ V +A +
Sbjct: 50 VRRQRTLDTLIDKLATK--KAHQQPPELRTILHLGFYQLRYQEKIPVSAAVNTTVELAKE 107
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+ F+N +L + R E
Sbjct: 108 NGFSSLTGFVNGLLRQYLRLIE 129
>gi|291003629|ref|ZP_06561602.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
erythraea NRRL 2338]
Length = 473
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA++ L + + + Y A L + D + +G
Sbjct: 33 ARSAALETL-----------RAVRDRDAYANLALPALLKQRRISGRDAALATELTYGACR 81
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I C +D L LR G +L+ +P ++ V I
Sbjct: 82 AQGLLDAVIGECSAR--PLDGIDPELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAES 138
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ F NAVL ++S ++E + ++
Sbjct: 139 GSRQAGFANAVLRRISERDEQEWIDRLAP 167
>gi|16331086|ref|NP_441814.1| transcription antitermination protein NusB [Synechocystis sp. PCC
6803]
gi|1653579|dbj|BAA18492.1| N utilization substance protein B [Synechocystis sp. PCC 6803]
Length = 275
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
++ +I V R+Q ID + + + W SRL I ILR + EL VP +V
Sbjct: 174 RKFALELIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAELDYL-GVPQKV 231
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
I+E V +A + D +FIN VL +V+ K+
Sbjct: 232 AINEAVELAKRYSGQDGHRFINGVLRRVTEKK 263
>gi|160945199|ref|ZP_02092425.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
M21/2]
gi|158442930|gb|EDP19935.1| hypothetical protein FAEPRAM212_02718 [Faecalibacterium prausnitzii
M21/2]
gi|295105571|emb|CBL03115.1| transcription antitermination factor NusB [Faecalibacterium
prausnitzii SL3/3]
Length = 148
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R AR A + E +S E+ H + R++++
Sbjct: 6 PRREARENAFLLAFSQTFGDIPLAEALSN------------HAENDEEHPVDAFSRLLLN 53
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
D +D I S L W+ RL + ++LR V E++ V I+E V +
Sbjct: 54 AYYDHSAEVDDEIRSHL-RNWTMERLPRVSLTVLRLAVAEMLFGGENKPGVAINEAVELT 112
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ G++ +F+N +L V+R
Sbjct: 113 KKYGAGEDYQFVNGLLGAVARD 134
>gi|326793335|ref|YP_004311155.1| sun protein [Marinomonas mediterranea MMB-1]
gi|326544099|gb|ADZ89319.1| sun protein [Marinomonas mediterranea MMB-1]
Length = 452
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL-EWFRVIIHGVM 77
AR AAV+ + Q+ + S + +L + D + GV
Sbjct: 13 AREAAVEVITQVLLQQGSLST--------------QLSKIQGKVDFDHHALLKEFCFGVC 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ + S L + F D + S L G+ +L S P I+E V +
Sbjct: 59 RHFPTLNSIALSLLAK--PFEERDYDVYSTLLLGLYQLQHM-STPDHAAINESVELCRTL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
K INAVL + R
Sbjct: 116 KKDWATKLINAVLRRYQRD 134
>gi|317495215|ref|ZP_07953585.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
M424]
gi|316914637|gb|EFV36113.1| ribosomal RNA small subunit methyltransferase B [Gemella moribillum
M424]
Length = 441
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
I + + Y + + D + +++G + K +++ ++ + +
Sbjct: 17 IFQEDAYSNITLNKYFNKYKLEEQDKRFISEVVYGTIKNKMYLEHILKNYSKGRVKPK-- 74
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ I+ + +L+ P II E V ++ F+N +L + R
Sbjct: 75 ---VKIIIIMAIYQLLYMDKTPSFAIIDEAVKLSKKILGNITGNFVNGILRNIERNLN 129
>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 435
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + Q+ G Y E+ + VD + +++G + R
Sbjct: 6 RGYAFDTIQQVLNDG-----------AYSNLKINEVLSSNEISTVDRNLYTELVYGTIKR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D ++ + ++ + +L + + + VP II+E V IA
Sbjct: 55 KYTLDYILKPFVKT-----KIKGWMRQLLWMSIYQYVYLDKVPDHAIINEAVDIAKHRGG 109
Query: 140 GDEPKFINAVLDKVSR 155
+N +L + R
Sbjct: 110 YHNGNVVNGILRSIMR 125
>gi|332522158|ref|ZP_08398410.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
porcinus str. Jelinkova 176]
gi|332313422|gb|EGJ26407.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
porcinus str. Jelinkova 176]
Length = 440
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 12 LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+++ + AR A+ A+ E I + Y A D
Sbjct: 1 MANNWKTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNQSIQGKDKGLIT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++G + +K ++ +S + ++ + +L + +++ VP I+++
Sbjct: 50 EIVYGTIAKKITLEWYLSHYVEDREKLDKWVYY---LLMLSLYQILYLEKVPSHAIVNDA 106
Query: 131 VCIAHDFFYGDEP-KFINAVLDKVS 154
V IA + K+INA+L ++S
Sbjct: 107 VDIAKNRGNKRGAEKYINAILRQIS 131
>gi|291166482|gb|EFE28528.1| ribosomal RNA small subunit methyltransferase B [Filifactor alocis
ATCC 35896]
Length = 440
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A ++Y + G Y ++ + + D ++ +++G ++
Sbjct: 5 RKLAYDSVYAVKYKGV-----------YSNLYISQSIKKYRLIDRDRVFYTELVYGTLEN 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-FF 138
+ +D +I +L + +IL + ++ V +++E V +A +
Sbjct: 54 IKFLDYVIDKF--SNVKVDKLSKEVLTILEVSLYQIHYMDGVQNFAVVNEMVNLAKVVWH 111
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
P F+N +L + R
Sbjct: 112 NARIPSFVNGILRNILRNPNA 132
>gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH60]
Length = 435
Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLRPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|324991975|gb|EGC23897.1| RNA methyltransferase Sun [Streptococcus sanguinis SK405]
Length = 438
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR ++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQVLEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D + +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWIYILLMLSLYQMLYLDKIPQHATVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KFINA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFINALLRRIERE 130
>gi|41407232|ref|NP_960068.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395583|gb|AAS03451.1| Fmu [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 464
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 18/166 (10%)
Query: 6 NKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
++ + R AR AA + L +SE + Y A L E
Sbjct: 2 SRPQQRGRANRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRERGI 50
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ D + + +G + +D +I + +D +L +LR G +L+ V
Sbjct: 51 IGRDAAFATELTYGTCRTRGLLDAVIGA--AAGRPPEAIDPVLLDLLRLGTYQLL-RTRV 107
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+S V A F F+N VL +++ ++E ++
Sbjct: 108 DAHAAVSTTVEQAAIEFDSARAGFVNGVLRRIAGRDERSWVQELAP 153
>gi|227875419|ref|ZP_03993560.1| possible transcription antitermination protein NusB [Mobiluncus
mulieris ATCC 35243]
gi|227843973|gb|EEJ54141.1| possible transcription antitermination protein NusB [Mobiluncus
mulieris ATCC 35243]
Length = 182
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+ LY+ + + I R E+ + R I+ GV + I
Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLRE-------TETTAQTPMPPYAREILEGVAEHLDRI 53
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D + + + WS R+ + +I+R E++ V V I+ + +A + + P
Sbjct: 54 DAAL-ATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112
Query: 144 KFINAVLDKVSRKEEI 159
KFIN +L ++ E
Sbjct: 113 KFINGLLGTINDMREA 128
>gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
ED133]
Length = 435
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 435
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|283457829|ref|YP_003362427.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
gi|283133842|dbj|BAI64607.1| tRNA and rRNA cytosine-C5-methylase [Rothia mucilaginosa DY-18]
Length = 697
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ ++ + R AR + L + Y +
Sbjct: 183 MSAREFSAAAPSARSRTADTARATVFEVLRSVAESD-----------AYANLVLPKAIRS 231
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
H D + + +G + + D ++ C+ ++ +LR GV +L+
Sbjct: 232 HRLDHRDAGFATELTYGTLRHQGTYDAILRHCVDR--PLEKVGTTTLIVLRMGVHQLLNM 289
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +++ V +A + FINAVL +VS + +
Sbjct: 290 R-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSERTPEEW 331
>gi|315178589|gb|ADT85503.1| cytosine-C5-methylase [Vibrio furnissii NCTC 11218]
Length = 426
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAAQVLFQVVDKGQSLSMALP-------------AAQQNIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + ++ + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESIANALMDS--PLKGKQRVFHHLILVGIYQLSFMR-IPPHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R ++ + +S
Sbjct: 108 PRLRGLINAVLRNYQRNQDALDAEAMS 134
>gi|288817964|ref|YP_003432311.1| transcription antitermination factor [Hydrogenobacter thermophilus
TK-6]
gi|288787363|dbj|BAI69110.1| transcription antitermination factor [Hydrogenobacter thermophilus
TK-6]
gi|308751562|gb|ADO45045.1| NusB antitermination factor [Hydrogenobacter thermophilus TK-6]
Length = 134
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A LYQ DI +I EY +E + R ++
Sbjct: 4 KQKARKDAFLILYQWDIKADKLEDITEEYIKSNLIKHSER----------RRYIRKLVRT 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
M + ID LIS +++W R+ I +ILR + E++ ++ +I +YV +
Sbjct: 54 YMQKASEIDSLISEL-SQEWDIDRMGYIERNILRVALAEILFVGVKKLKPVIMDYVKLTL 112
Query: 136 DFFYGDEPKFINAVLDKVS 154
+ + KF+N VL + +
Sbjct: 113 KYAGKEPAKFVNGVLGRAA 131
>gi|293363740|ref|ZP_06610483.1| transcription antitermination factor NusB [Mycoplasma alligatoris
A21JP2]
gi|292552705|gb|EFF41472.1| transcription antitermination factor NusB [Mycoplasma alligatoris
A21JP2]
Length = 150
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 24/161 (14%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K R +R +Q +Y+ ++ I + + F ++L
Sbjct: 1 MKYKKTRRKSREEKIQVIYRFELFDEVIN-ISQSFVEFDFLDPSQL-------------- 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ G+ I +I+S L W++ R+ + ++L EL ++P +++I+E
Sbjct: 46 -KFLEGIEKNYVFIKKIINSFLNTDWTWHRIPPFIRAVLINATAELF---AIPPKIVINE 101
Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSRKEEIKRSGCV 165
V I DFF KF+NA+L V + S +
Sbjct: 102 AVEITKDFFCMTEKDQKFYKFVNAILQNVYKSIVALESSTM 142
>gi|257460184|ref|ZP_05625288.1| transcription antitermination factor NusB [Campylobacter gracilis
RM3268]
gi|257442625|gb|EEV17764.1| transcription antitermination factor NusB [Campylobacter gracilis
RM3268]
Length = 342
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 16/141 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R ARLAA+ LY D+ G E R + W +
Sbjct: 1 MATRHQARLAAISLLYSRDMNGGGEDFADEYLEEKRIRNEQ------------RNWTLAL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + +D LI L E + + + + +ILR G EL ++I+E +
Sbjct: 49 LRGASENLAAVDALIDENLKE-FKLAEISALERAILRLGAYELRFTD-TDAGIVINEAIN 106
Query: 133 IAHDFFYGDEPKFINAVLDKV 153
A + P+FIN VLD +
Sbjct: 107 SAKELGI--SPRFINGVLDAL 125
>gi|297571422|ref|YP_003697196.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
20595]
gi|296931769|gb|ADH92577.1| NusB antitermination factor [Arcanobacterium haemolyticum DSM
20595]
Length = 159
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 13/166 (7%)
Query: 1 MTIQDN--KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ ++ ++ R + R A+ LY+ D+ G E
Sbjct: 1 MSNEERTQQRRNNGRKGRSLQRQRALDVLYEADVRGAEHDLA---------SLLEERSQL 51
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
S ++ ++I+ + +D +I + +W+ +R+ ++ ++LR G EL+
Sbjct: 52 SPSQQPIQKYGQLIVSTYAEWADDVDSMI-EAASPQWALARMSVVDRNLLRIGATELMYL 110
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
VP +++ E + DF F VL++++ + SG
Sbjct: 111 D-VPTAIVVKEITALVRDFSTDKAVGFTMGVLNRIAEIRSEETSGR 155
>gi|315608439|ref|ZP_07883427.1| NusB family protein [Prevotella buccae ATCC 33574]
gi|315249899|gb|EFU29900.1| NusB family protein [Prevotella buccae ATCC 33574]
Length = 345
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ + D E+ R + + + S + W FSRL + I++ +
Sbjct: 195 NQELLPEYKDEEDREFARKLFRATILNADQYQRYM-SDASRNWDFSRLAYMDVVIMQIAI 253
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ +PV V I+EYV +A + +IN +LD ++R
Sbjct: 254 AEMLTFPGIPVSVTINEYVNLAKVYSTPRSGGYINGMLDNIAR 296
>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
Length = 471
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 15/148 (10%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
++L R AR A L E+ + + D
Sbjct: 10 PPMQLLAPRT-ARELAFNVLEAHHAGNKHIGEVFD-----------QAVDRTTLSPSDRR 57
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+I G++ R+ + L+ S + + L+ L +I++ G+ ++ C +P +
Sbjct: 58 LAYELICGIVRRQSTLQALLMSLVHRQ--METLERPLQTIIKIGLYQIFLCQGIPQHAAV 115
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E V +A F+N VL +
Sbjct: 116 HETVELAKRANLRW-GGFVNGVLRSAIQ 142
>gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
Length = 435
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNIMDKALFTEIVYGTIKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|157149881|ref|YP_001449914.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
gi|157074675|gb|ABV09358.1| sun protein [Streptococcus gordonii str. Challis substr. CH1]
Length = 437
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ RR AR A++ L ++ G + A + + D
Sbjct: 1 METRRKSARQVALEVLEEVFDQG-----------AFSNIALNKALKKVQLSQQDKSLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ IL + +++ +P +I E V
Sbjct: 50 LVYGTVARKLTLEWYLSHLIEDRDKLDSWLYILLL---LSLYQMLYLDKIPNHALIHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
+A KF+NA+L ++ R+
Sbjct: 107 ELAKKRKL-GSDKFVNAILRRIERE 130
>gi|255325951|ref|ZP_05367041.1| ribosomal RNA small subunit methyltransferase B [Rothia
mucilaginosa ATCC 25296]
gi|255296966|gb|EET76293.1| ribosomal RNA small subunit methyltransferase B [Rothia
mucilaginosa ATCC 25296]
Length = 659
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M+ ++ + R AR L + Y +
Sbjct: 145 MSAREFSAAAPSARSRTADTARATVFDVLRSVAESD-----------AYANLVLPKAIRS 193
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
H D + + +G + + D ++S C+ ++ +LR GV +L+
Sbjct: 194 HRLDHRDAGFATELTYGTLRHQGTYDAILSRCVDR--PIEKVGTTTLIVLRMGVHQLLNM 251
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
VP +++ V +A + FINAVL +VS + +
Sbjct: 252 R-VPAHAALNQSVSLAREKIGAGPASFINAVLRRVSERTPEEW 293
>gi|300811637|ref|ZP_07092113.1| transcription antitermination factor NusB [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497338|gb|EFK32384.1| transcription antitermination factor NusB [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|325685900|gb|EGD27966.1| transcription antitermination protein NusB [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 132
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + + SE E A L + + ++ GV
Sbjct: 4 HDSRRIALQAIY---LYNQDPSVTASELENNVKSALD--------LDTLPAYSQELVSGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+D++ + +S+ L + W RL +IL + E++ + I+E + + +
Sbjct: 53 IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRK 156
F FIN +L ++
Sbjct: 113 FDDPKSKAFINGILANFVQE 132
>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
Length = 435
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N +L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|126664007|ref|ZP_01735001.1| putative N utilization substance protein [Flavobacteria bacterium
BAL38]
gi|126623956|gb|EAZ94650.1| putative N utilization substance protein [Flavobacteria bacterium
BAL38]
Length = 302
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
I+ + + + DT + + D ++ + + + + + T W R
Sbjct: 172 IVKQIKQLKSEKDTLIVPKVYKDEDDKDFVKNLFRRTVLNEVELSKEYIDK-TPNWDVER 230
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ I IL+ + EL++ S+P +V I+EY+ IA ++ FIN +LD + ++
Sbjct: 231 IAEIDTIILKMAICELLKFPSIPTKVTINEYLEIAKEYSTPKSSIFINGILDNLVKE 287
>gi|326406239|gb|ADZ63310.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis CV56]
Length = 323
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 27 LYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
L Q + S +E++ + + D + + +F ++ GV+D+K+ ++
Sbjct: 199 LAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPE----YFTQLVDGVLDKKEDLEA 254
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
IS LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +F
Sbjct: 255 NISKYLTKTWSFSRLTLVEQAILQVSSYEILYTE-TPDVVAVNEAVELSKDFSDEKSSRF 313
Query: 146 INAVLDKVSR 155
IN VL +
Sbjct: 314 INGVLTNFLK 323
>gi|317121758|ref|YP_004101761.1| sun protein [Thermaerobacter marianensis DSM 12885]
gi|315591738|gb|ADU51034.1| sun protein [Thermaerobacter marianensis DSM 12885]
Length = 511
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 2/109 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y A + + + + +GV R+ +D +S + +RLD + +
Sbjct: 81 YVDHALARILDRAALPARERALATELAYGVARRQGTLDWALSRF--SRKPPARLDPPVRA 138
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
LR G +L +P + E V + F+NAVL +R
Sbjct: 139 ALRLGAYQLWYLDRIPAHAAVDESVNLVRRHGPAYAAGFVNAVLRAAAR 187
>gi|226226029|ref|YP_002760135.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226089220|dbj|BAH37665.1| putative rRNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 428
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D W + ++ GV+ ++ +D ++++ + S LD + ILR G +L+
Sbjct: 16 PTLDARDRRWVQELVWGVLRHRERLDAILATRIRGG--LSVLDDGVLDILRLGTYQLLSM 73
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
SVP I + V K +NAVL ++ R+ +
Sbjct: 74 DSVPPYAAIGQSVEAVKRKHGIGAGKLVNAVLRRIDRERATIEPALPA 121
>gi|324994072|gb|EGC25986.1| RNA methyltransferase Sun [Streptococcus sanguinis SK678]
gi|327459278|gb|EGF05624.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1]
gi|327472704|gb|EGF18131.1| RNA methyltransferase Sun [Streptococcus sanguinis SK408]
gi|327490496|gb|EGF22277.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1058]
Length = 438
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR ++ L ++ G + ++ D
Sbjct: 1 MESKQKTARWQVLEILEEVFEEGAYSNIALNRALNQSL-----------LSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHATVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFVNALLRRIERE 130
>gi|146299958|ref|YP_001194549.1| transcription termination factor-like protein [Flavobacterium
johnsoniae UW101]
gi|146154376|gb|ABQ05230.1| Transcription termination factor-like protein [Flavobacterium
johnsoniae UW101]
Length = 303
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 40 IISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
II + + + E V +Y D ++ + + + + + T W
Sbjct: 172 IIKQLKAIKTDNPDEFRVPKLYKDVEDKDFAKDLFRRTVLNEAVLAKE-YDDKTPNWDSE 230
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
R+ I IL+ + E ++ S+PV+V ++EY+ IA ++ FIN +LD + ++ E
Sbjct: 231 RIAEIDTIILKMAICEFLKFPSIPVKVTLNEYLEIAKEYSTPKSSIFINGILDNLVKELE 290
Query: 159 IKR 161
+
Sbjct: 291 ASK 293
>gi|86605070|ref|YP_473833.1| transcription antitermination protein NusB [Synechococcus sp.
JA-3-3Ab]
gi|119390839|sp|Q2JQT6|NUSB_SYNJA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|86553612|gb|ABC98570.1| transcription antitermination factor NusB [Synechococcus sp.
JA-3-3Ab]
Length = 288
Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76
QAL ++ S I+ E A L V + ++ +
Sbjct: 132 QALEHLEQRLYSVRRILDEVVQLSQKAVNRLGVALSMPELLHIAQAQEVRAYALQLLTAL 191
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
K+ ID + L W R+ I ILR V+E+ S P +V I+E V +A
Sbjct: 192 RTHKEAIDARLQGVLVG-WQLKRVGRIERDILRLAVVEMEILRSSPDKVAINEAVELAKK 250
Query: 137 FFYGDEPKFINAVLDKVS 154
+ + F+N VL ++
Sbjct: 251 YGDPEAAAFVNGVLRRLV 268
>gi|332364575|gb|EGJ42344.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1059]
Length = 438
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR ++ L ++ G + ++ D
Sbjct: 1 MESKQKTARWQVLEILEEVFEEGAYSNIALNRALNQSL-----------LSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF+NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFVNALLRRIERE 130
>gi|332520936|ref|ZP_08397396.1| transcription antitermination factor NusB [Lacinutrix algicola
5H-3-7-4]
gi|332043466|gb|EGI79662.1| transcription antitermination factor NusB [Lacinutrix algicola
5H-3-7-4]
Length = 303
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D E+ + + + + I+S T W R+ I +L+ G+ E+ + S+P
Sbjct: 197 EDKEFAIKLFKKTLLNQSILSKEIASK-TTNWDADRIANIDYLLLKMGICEIKDFPSIPT 255
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+V I+EY+ I+ ++ FIN +LDK+ ++ E +
Sbjct: 256 KVTINEYLEISKEYSTPKSKVFINGILDKLVKEYENE 292
>gi|281491193|ref|YP_003353173.1| transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
gi|281374934|gb|ADA64452.1| Transcription antitermination factor [Lactococcus lactis subsp.
lactis KF147]
Length = 323
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 27 LYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
L Q + S +E++ + + D + + +F ++ GV+D+K+ ++
Sbjct: 199 LAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPE----YFTQLVDGVLDKKEDLEA 254
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
IS L + WSFSRL ++ +IL+ E++ P V ++E V ++ DF +F
Sbjct: 255 NISKYLAKTWSFSRLTLVEQAILQVSSYEILYTE-TPDVVAVNEAVELSKDFSDEKSSRF 313
Query: 146 INAVLDKVSR 155
IN VL +
Sbjct: 314 INGVLTNFLK 323
>gi|15672676|ref|NP_266850.1| hypothetical protein L92686 [Lactococcus lactis subsp. lactis
Il1403]
gi|12723603|gb|AAK04792.1|AE006302_10 transcription termination protein NusB [Lactococcus lactis subsp.
lactis Il1403]
Length = 323
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 27 LYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
L Q + S +E++ + + D + + +F ++ GV+D+K+ ++
Sbjct: 199 LAQAENNAQSQLSELLKNTKRFVLNYDNDRPEDLEAPE----YFTQLVDGVLDKKEDLEA 254
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
IS LT+ WSFSRL ++ +IL+ E++ P V ++E V ++ DF +F
Sbjct: 255 NISKYLTKTWSFSRLTLVEQAILQVSSYEILYTE-TPDVVAVNEAVELSKDFSDEKSSRF 313
Query: 146 INAVLDKVSR 155
IN VL +
Sbjct: 314 INGVLTNFLK 323
>gi|297559856|ref|YP_003678830.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844304|gb|ADH66324.1| NusB antitermination factor [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 137
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V+ LY+ ++ S ++I ++ + V +R++ I
Sbjct: 13 VEVLYEAEVRATSVEDVIRRRRA-------------QPEPPINDFTESLARSVDERRERI 59
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D L+ W+ R+ ++ +ILR G EL+ +P V I+E V +A + + P
Sbjct: 60 DELL-DTYAIGWTLERMPVVDRNILRMGAYELLWADDIPDGVAIAEAVGVAKELSTDESP 118
Query: 144 KFINAVLDKVSRKE 157
F++ +L ++ +
Sbjct: 119 NFVSGLLSRLMENK 132
>gi|301066686|ref|YP_003788709.1| transcription termination factor [Lactobacillus casei str. Zhang]
gi|300439093|gb|ADK18859.1| Transcription termination factor [Lactobacillus casei str. Zhang]
Length = 135
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 42/89 (47%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ V+ ++ +D ++ L + W+ +RL ILR G+ E+ ++P
Sbjct: 42 AYLTTLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDLIILRLGLYEIRYEEAMPEAAA 101
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+E + +A + KF+N +L +
Sbjct: 102 INEAINLAKRYSDDQSAKFVNGILANFIQ 130
>gi|86143181|ref|ZP_01061583.1| putative N utilization substance protein [Leeuwenhoekiella
blandensis MED217]
gi|85830086|gb|EAQ48546.1| putative N utilization substance protein [Leeuwenhoekiella
blandensis MED217]
Length = 304
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
++ + + D ++ + ++ + + I T W R+ + ++
Sbjct: 182 NSPESTILPKLYKDEEDRQFAKDLLLRTARNDEEYEAEIL-GNTPNWDQDRIAALDKILI 240
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + E + S+PV+V I+EY+ ++ ++ F+N VLD++ +K +
Sbjct: 241 KMALCEFLRFSSIPVKVTINEYLELSKEYSTPKSSIFVNGVLDRLVKKYKKDN 293
>gi|303250733|ref|ZP_07336929.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252024|ref|ZP_07338195.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649454|gb|EFL79639.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302650403|gb|EFL80563.1| transcription antitermination protein NusB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 98
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
VDL +FR ++ G + + ID + L +D I +ILR EL
Sbjct: 1 MNGVDLPYFRKLLRGTVLYVEAIDNDLRPFLDRAED--EVDPIERTILRLSAYELKYELD 58
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP +V+I+E + +A F D K+IN +LDK++
Sbjct: 59 VPYKVVINEGIEVAKVFGSDDSHKYINGILDKLA 92
>gi|104774290|ref|YP_619270.1| transcription antitermination protein NusB [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|103423371|emb|CAI98227.1| Transcription antitermination protein NusB [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|325126077|gb|ADY85407.1| Transcriptional termination factor [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 132
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + + SE E A L + + ++ GV
Sbjct: 4 HDSRRIALQAIY---LYNQDPSFTASELENNVKSALD--------LDTLPAYSQELVSGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+D++ + +S+ L + W RL +IL + E++ + I+E + + +
Sbjct: 53 IDKQAELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRK 156
F FIN +L ++
Sbjct: 113 FDDPKSKAFINGILANFVQE 132
>gi|262195801|ref|YP_003267010.1| sun protein [Haliangium ochraceum DSM 14365]
gi|262079148|gb|ACY15117.1| sun protein [Haliangium ochraceum DSM 14365]
Length = 501
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+ A S D + +G + ++ +D +++ +LD
Sbjct: 60 AFATLALGAALKSSGLDARDRALVTELCYGSLRQQMRLDRALAALTPRG--LGKLDAATL 117
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
SILR E++ VP ++ V A F N VL ++R+ E
Sbjct: 118 SILRVAAYEILFLERVPAHASVNSAVRAARRLGGQRFAGFANGVLRTLAREGEPALPPES 177
Query: 166 SAIT 169
Sbjct: 178 EPRA 181
>gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
Length = 435
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ ++ VD F +++G + RK +D ++ + K +
Sbjct: 21 AYSNLKINEVLSSNIIADVDRNLFTELVYGTIKRKYTLDYILKPFVKTKIK-----GWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + VP II+E V IA +N +L + R
Sbjct: 76 QLLWMSIYQYVYLDKVPDHAIINEAVDIAKQRGGHHNGNIVNGILRSLMR 125
>gi|289675585|ref|ZP_06496475.1| transcription antitermination protein NusB [Pseudomonas syringae
pv. syringae FF5]
Length = 127
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 2 TIQDNKKDLK-------LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
T Q N +D K S +R AR A QALYQ + G S EI +++
Sbjct: 6 TDQFNPRDAKSPEAAKGKSAKRREARQMATQALYQWHMAGHSLNEIEAQF---------- 55
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
V++ + +VD +F ++HGV K ID +S CL + LD + ++LR E
Sbjct: 56 -RVDNDFSNVDGTYFHELLHGVATNKTEIDTALSPCLDL--TIEELDPVELAVLRLSTFE 112
Query: 115 LIECHSVPVEVIISE 129
L++ VP V+I+E
Sbjct: 113 LLKRIDVPYRVVINE 127
>gi|218290478|ref|ZP_03494598.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239499|gb|EED06694.1| sun protein [Alicyclobacillus acidocaldarius LAA1]
Length = 451
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 14/142 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QAL +++ G Y A E + D I +G + R
Sbjct: 6 RRRAYQALIRVERDG-----------AYLNVALQEALAGAGVDERDRALATEIAYGTLRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L+S + S+LD + ILR G ++ + VP + ++ V +A
Sbjct: 55 QITLDRLLSPL--VRRPMSKLDPEVRVILRMGAYQMTWLNRVPAYAVANDAVELAKRHR- 111
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+NAVL + + + +
Sbjct: 112 PQAAALVNAVLRRYAERAQDWE 133
>gi|229825477|ref|ZP_04451546.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
49176]
gi|229790040|gb|EEP26154.1| hypothetical protein GCWU000182_00837 [Abiotrophia defectiva ATCC
49176]
Length = 138
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 12/146 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + ++ I Y + E + + D E +
Sbjct: 3 RREFREHTAKLIF-----------IFDFYPEAEWKEQFESYADYSEIKEDREGLWQRVMA 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ++K +D LI ++KW SRL +LR V E+ +P +V ++E V +A
Sbjct: 52 LEEKKAEVDSLI-DGASKKWRISRLSKTDLMLLRVAVYEIKFDSEIPDKVSVNEAVELAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + P F+N VL K EE K
Sbjct: 111 IYGGDESPAFVNGVLAKFMSGEEAKE 136
>gi|325298378|ref|YP_004258295.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
gi|324317931|gb|ADY35822.1| NusB antitermination factor [Bacteroides salanitronis DSM 18170]
Length = 308
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
+ + + D ++ R + + + LIS + W R+ ++ I++
Sbjct: 195 EKQELLPEFKDEEDRDFARRLFRRSILNADYYRHLISEN-SRNWDLKRVAVMDVIIMQIA 253
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ E++ ++PV V ++EYV IA + FIN LD + + + +
Sbjct: 254 LAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGFINGTLDGIVNQLKKEN 303
>gi|269120364|ref|YP_003308541.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
gi|268614242|gb|ACZ08610.1| NusB antitermination factor [Sebaldella termitidis ATCC 33386]
Length = 130
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ ++I ++E + D+E+ R I
Sbjct: 3 RRKLREEIFKLLFERELIDNDMDVRLAEVLSENNI----------TKEEDIEFMREYIKN 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V + K+ I+ I S L WSF L + ++L+ E+ E + V I+E V +A
Sbjct: 53 VTEHKESIEDKIKSKLVG-WSFDILGTVEKTLLKMSFYEITEAGTGHEIV-INETVELAK 110
Query: 136 DFFYGDEPKFINAVL 150
+ P FIN +L
Sbjct: 111 KYGEDKTPDFINGIL 125
>gi|167756946|ref|ZP_02429073.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
gi|237734649|ref|ZP_04565130.1| predicted protein [Mollicutes bacterium D7]
gi|167703121|gb|EDS17700.1| hypothetical protein CLORAM_02495 [Clostridium ramosum DSM 1402]
gi|229382469|gb|EEO32560.1| predicted protein [Coprobacillus sp. D7]
Length = 134
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 11/144 (7%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K ++ I R AV A YQ ++ + EI + + + + D ++
Sbjct: 1 MKKYRKK-IIREKAVIATYQKLLVDTNEDEIREYLNSDKDLSSNQD---------DFDYC 50
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I + + ++ L W+ RL + +IL G EL+E VII+E
Sbjct: 51 FMFIISIASNIERYKAEVAKYLKPGWTLDRLSKMELAILLVGCYELLETEQSKE-VIINE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
V ++ + D KFIN +L+++
Sbjct: 110 AVELSKKYCDSDAYKFINGLLNRI 133
>gi|186680628|ref|YP_001863824.1| transcription antitermination protein NusB [Nostoc punctiforme PCC
73102]
gi|238689253|sp|B2J3F1|NUSB_NOSP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|186463080|gb|ACC78881.1| NusB antitermination factor [Nostoc punctiforme PCC 73102]
Length = 213
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
EL + + + ++ V + + ID L+S+ L + W +RL + IL+ V
Sbjct: 108 PELIQLANQDKGVRNYAKELVITVNENRHIIDELLSTALVD-WQVTRLAQLDRDILQIAV 166
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
E+ VP + I+E V +A + D +FIN VL +V+ +++
Sbjct: 167 AEMKFL-GVPDSIAINEAVELAKRYSGDDGHRFINGVLRRVTEQKKT 212
>gi|296170731|ref|ZP_06852304.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894614|gb|EFG74350.1| RNA methyltransferase Sun [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 461
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 18/169 (10%)
Query: 3 IQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
+ + + +R AR AA + L +SE + Y A L E
Sbjct: 1 MSPPRPPNRGRGKRRRPLDPARAAAFEVL-----------RAVSERDAYANLALPALLRE 49
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + +G + +D +I + S +D +L +LR G +L+
Sbjct: 50 RQISGRDAAFATELAYGTCRTRGLLDAVIGA--AAGRSPDTIDPVLLDLLRLGTYQLLRT 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+S V A F F+N VL V+ ++E ++
Sbjct: 108 RVDSYAA-VSTTVEQAGIEFDSARAGFVNGVLRAVAARDEKSWVEELAP 155
>gi|239632001|ref|ZP_04675032.1| NusB antitermination factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|239526466|gb|EEQ65467.1| NusB antitermination factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 139
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 13/145 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
R R + + + D +
Sbjct: 3 NKMESRHAIRE-------------AAFQALFALATNPEADKDAVYAEVLPQDTEVPAYLT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
++ V+ ++ +D ++ L + W+ +RL ILR G+ E+ ++P I+E
Sbjct: 50 TLVEAVLSKQADLDAALTPQLKKGWTLNRLTKPDLIILRLGLYEIRYEEAMPEAAAINEA 109
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
+ +A + KF+N +L +
Sbjct: 110 INLAKRYSDDQSAKFVNGILANFIQ 134
>gi|330685494|gb|EGG97147.1| NusB family protein [Staphylococcus epidermidis VCU121]
Length = 228
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 32 IIGCSTTEIISEYET--YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
I G + I + + Y E+ +D F +++G + RK +D +
Sbjct: 5 IRGLAFETIQAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKP 64
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
L K + +L + + + VP II+E V IA + +N +
Sbjct: 65 FLKTKIK-----GWVRELLWMSIYQYVYLDKVPDHAIINEAVEIAKEEGGYYTGNVVNGI 119
Query: 150 LDKVSR 155
L + R
Sbjct: 120 LRNIMR 125
>gi|296140265|ref|YP_003647508.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
gi|296028399|gb|ADG79169.1| Fmu (Sun) domain protein [Tsukamurella paurometabola DSM 20162]
Length = 452
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 14/151 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA++ L + E Y L ++ D + + +G
Sbjct: 5 ARRAALETL-----------AAVRERGAYANLVLPGLLRQARLTGRDAAFATELTYGACR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I S +D + LR GV +L+ V + E V
Sbjct: 54 AQGLLDAVIED--ASGRSVDEIDGPVLDALRLGVYQLL-RTRVGAHAAVDETVEAVKASS 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
F NAVL KVS+ +E ++
Sbjct: 111 GRGAGGFANAVLRKVSKADEDAWVAKLAPSA 141
>gi|225011815|ref|ZP_03702253.1| transcription antitermination factor NusB [Flavobacteria bacterium
MS024-2A]
gi|225004318|gb|EEG42290.1| transcription antitermination factor NusB [Flavobacteria bacterium
MS024-2A]
Length = 314
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
D ++ ++ V+ + + T W R+ + IL+ + EL
Sbjct: 200 FPRPSENKEDTDFGIQLLEKVIANDSKLQEELL-GKTPNWDAERIAQLDNVILKVAIAEL 258
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ +P +V ++EY+ IA D+ F+N VLDK+ ++ + +
Sbjct: 259 LYFPMIPSKVTLNEYLEIAKDYSTPKSNNFVNGVLDKLVKEFDHEN 304
>gi|291459867|ref|ZP_06599257.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
str. F0262]
gi|291417657|gb|EFE91376.1| n utilization substance protein B [Oribacterium sp. oral taxon 078
str. F0262]
Length = 264
Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ D + ES + + + G++ R + +D I+ E W+ R+
Sbjct: 119 LKAEEEGDDPDPVGESGLRLSEEREIQKEVCGMVGRIEELDRRINEA-AEGWTTKRMSRT 177
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
++LR + E++ +P +V I+E V IA + + F+N VL +R KRS
Sbjct: 178 DLTVLRLALYEILFRDEIPDKVSINEAVDIAKKYGGAESGSFVNGVL---ARLLNPKRSA 234
>gi|254556524|ref|YP_003062941.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
gi|254045451|gb|ACT62244.1| rRNA methylase (putative) [Lactobacillus plantarum JDM1]
Length = 447
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y +L + D+ +++GV+ + ++ ++ +
Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQIDPWVRE-- 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + +P + +E + IA + +F+ VL ++ R
Sbjct: 81 -LLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129
>gi|184200812|ref|YP_001855019.1| putative rRNA (cytosine-C(5)-)-methyltransferase [Kocuria
rhizophila DC2201]
gi|183581042|dbj|BAG29513.1| putative rRNA methyltransferase [Kocuria rhizophila DC2201]
Length = 553
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
RR ARLAA +AL ++ + Y L E D +
Sbjct: 82 PGQRRRQSDPARLAAFRAL-----------RAVTSEDAYGNLVLPGLVRELRLDRRDAAF 130
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +G M D +++ C+ +LD + LR G +L+ VP +
Sbjct: 131 ATELGYGAMRFSGTWDAVLAECVDR--PLEQLDPAVLDALRLGTHQLLAMR-VPDHAALD 187
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V + +NAVL KV+R+ + + + A
Sbjct: 188 ATVGLVRGEIGQGPAGLVNAVLRKVARRSQEEWFEALEA 226
>gi|300767253|ref|ZP_07077165.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308180467|ref|YP_003924595.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|300495072|gb|EFK30228.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045958|gb|ADN98501.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 447
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y +L + D+ +++GV+ + ++ ++ +
Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQIDPWVRE-- 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + +P + +E + IA + +F+ VL ++ R
Sbjct: 81 -LLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129
>gi|322434767|ref|YP_004216979.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
gi|321162494|gb|ADW68199.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX9]
Length = 459
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 14/136 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L + + E++ T D ++ GV+
Sbjct: 56 ARRAAFEILMLVKAGKGHSDELLHGQWT------------DKLSEADTNLTTALVMGVLR 103
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D + + + RL + LR G +L+ +P +SE V +
Sbjct: 104 WEIALDARLRTL--LQRPDQRLAEPVAMALRLGAFQLLHMDRIPAHAALSESVELCRAAG 161
Query: 139 YGDEPKFINAVLDKVS 154
+NAVL KV+
Sbjct: 162 EPHATGMVNAVLRKVA 177
>gi|328945030|gb|EGG39186.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1087]
Length = 438
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E V
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHAAVHEAV 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFANALLRRIERE 130
>gi|28378317|ref|NP_785209.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
gi|28271152|emb|CAD64057.1| rRNA methylase (putative) [Lactobacillus plantarum WCFS1]
Length = 447
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y +L + D+ +++GV+ + ++ ++ +
Sbjct: 23 AYSNLQLNQLINDHQMDRRDINLLTNMVYGVIQHRLTLEYWLTPFVRHPHQIDPWVRE-- 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + +P + +E + IA + +F+ VL ++ R
Sbjct: 81 -LLLSALYQWQYLDKIPQRAVFNETIEIAKVKGHPGIRRFVTGVLHQMDR 129
>gi|281420711|ref|ZP_06251710.1| NusB family protein [Prevotella copri DSM 18205]
gi|281405484|gb|EFB36164.1| NusB family protein [Prevotella copri DSM 18205]
Length = 355
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 6/129 (4%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHV-----DLEWFRVIIHGVMDRKQHIDLLIS 88
I + D E + L D E+ R + + +S
Sbjct: 178 NDDKDIIDTFVLKTIKRFDPEAKAKQELLPEYKDAEDREFARKLFRATILNCDTYQRYMS 237
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L W FSRL + I++ + E++ +P V I+EYV +A + ++N
Sbjct: 238 EAL-RNWDFSRLAYMDVIIMQIAIAEVMNFPGIPATVTINEYVELAKAYSTPRSGGYVNG 296
Query: 149 VLDKVSRKE 157
+LD + R+
Sbjct: 297 MLDSICREL 305
>gi|313890028|ref|ZP_07823664.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121619|gb|EFR44722.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pseudoporcinus SPIN 20026]
Length = 440
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 16/145 (11%)
Query: 12 LSHR-RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+++ + AR A+ A+ E I + Y A D
Sbjct: 1 MANNWKTKARGKALLAI-----------EDIFDNGAYSNIALNNQLSNHSVQDKDKGLIT 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++G + +K ++ +S + ++ + +L + +++ +P I+++
Sbjct: 50 EIVYGTIAKKITLEWYLSHYVEDREKLDKWVYY---LLMLSLYQMLYLEKIPSHAIVNDA 106
Query: 131 VCIAHDFFYGDEP-KFINAVLDKVS 154
V IA + Y K+INA+L +VS
Sbjct: 107 VDIAKNRGYKRGAEKYINAILRQVS 131
>gi|257464362|ref|ZP_05628739.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
gi|317061867|ref|ZP_07926352.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
gi|313687543|gb|EFS24378.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D12]
Length = 432
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y EL + + + + + +GV+ K ++D +IS + E L
Sbjct: 18 KYSNIVLNELFHKKSFQKGEKNFITEVFYGVIRNKIYLDHMISQKVKEIKK-----DWLQ 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ R ++ S V I E V +A + +F+NAVL R + +
Sbjct: 73 QLFRLSFYQIRFMESDDKGV-IWEGVELAKKKYGISVSRFVNAVLRNFQRSFSEEEEKLI 131
Query: 166 SAITQ 170
A +
Sbjct: 132 KAEKE 136
>gi|91216596|ref|ZP_01253562.1| putative N utilization substance protein [Psychroflexus torquis
ATCC 700755]
gi|91185390|gb|EAS71767.1| putative N utilization substance protein [Psychroflexus torquis
ATCC 700755]
Length = 302
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ + +D + V +Y +V+ E F + I+ T W R+ I
Sbjct: 175 FLQKQKESDEVITVPRLYKNVEDENFAKELFTKTLLANDQLTEITKNKTPNWDQDRIADI 234
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+++ + E ++ S+PV V I+EY+ +A ++ FIN VLD VS++ +
Sbjct: 235 DSILIKMALCEFLKFPSIPVRVTINEYLELAKEYSTPKSSTFINGVLDTVSKEYQTN 291
>gi|113474586|ref|YP_720647.1| sun protein [Trichodesmium erythraeum IMS101]
gi|110165634|gb|ABG50174.1| sun protein [Trichodesmium erythraeum IMS101]
Length = 443
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L +I T + + ++ + + +++G + R
Sbjct: 6 RQLAFIILQEIYRKQVFTDVALDRHL-----------KKNDLIDANRRLVTELVYGCVRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D +I +K + L IL G+ +L +P + V +A +
Sbjct: 55 QRSLDAIIDQLAKKKSP--QQHPYLRIILHIGLYQLSYLEQIPESAAVDTTVELAKQNKF 112
Query: 140 GDEPKFINAVLDKVSRKE 157
F+N +L + R+
Sbjct: 113 AKLAGFVNGLLREYIRQN 130
>gi|251770860|gb|EES51447.1| transcription antitermination factor (NusB) [Leptospirillum
ferrodiazotrophum]
Length = 180
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 1 MTIQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT ++ L S RR AR +Q L+ + + + + + D +
Sbjct: 1 MT--SGRETLPSSRRRALSAARGKVLQRLFAEEYESRPSPDPLLKDLIGWEGEDPMANAY 58
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ L+ ++ + + I V++ WS RL + +ILR G+ E++
Sbjct: 59 ADRLYAEILFRKPEIDAVIEEL-----------ARGWSLPRLTRVDRNILRIGLCEILFD 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
++P V + E + +AH F + F+N +L
Sbjct: 108 PAMPFRVSVHEALDLAHRFSDPEAVSFLNGILH 140
>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 448
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 4/111 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + D +++G + ++ +D +S + ++ +
Sbjct: 27 AYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTLDYWLSPFIAG----KKVRPWVK 82
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++L + + VP E + IA +F+ VL + R
Sbjct: 83 TLLLMALFQYQYLDRVPNFAATDEAIEIAKRRGNPGVRRFVTGVLHAILRN 133
>gi|88608227|ref|YP_506746.1| putative N utilization substance protein B [Neorickettsia sennetsu
str. Miyayama]
gi|88600396|gb|ABD45864.1| putative N utilization substance protein B [Neorickettsia sennetsu
str. Miyayama]
Length = 141
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + +ARL +++ Y +E+IS EL DLE
Sbjct: 1 MPSEKRVARLLSIEVCYSSYFSDLPQSELISRAL--------ELQEMPYMKRYDLELLNS 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ + + LI L+E+W +R+D + S+LR + EL ++I+EYV
Sbjct: 53 ILDLCLANVEADTELIGRFLSEEWEINRIDNLKLSLLRVAISELRLSSVGQRNLVINEYV 112
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ F E F+NA+L+K++ + + K
Sbjct: 113 SLGGLFLSVKEVGFVNAILEKLASEIQGK 141
>gi|212632964|ref|YP_002309489.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
WP3]
gi|212554448|gb|ACJ26902.1| Fmu, rRNA SAM-dependent methyltransferase [Shewanella piezotolerans
WP3]
Length = 428
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + + + + D + +GVM
Sbjct: 6 RALAAKVVFQVLEKGISLSVALPDQQKHL------------DSGKDKALLAELCYGVMRH 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S C+++ I+ +L G ++ +P ISE +
Sbjct: 54 LPQLDKQVSDCMSK--PLKGKQRIVHQLLLIGCYQIYFTR-IPSHAAISETAEACRQLKF 110
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 111 EGLVKVVNGVLRTIQRQEK 129
>gi|239917585|ref|YP_002957143.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
luteus NCTC 2665]
gi|239838792|gb|ACS30589.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
luteus NCTC 2665]
Length = 543
Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADT 53
QD + + RG AR + QA Q + + + Y
Sbjct: 29 QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
++ D + + +G + D +++ C+ ++D + LR G
Sbjct: 89 ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+L+ VP + V + F+NAVL +++ + + V+
Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAERPLEEWLADVAP 199
>gi|157959859|ref|YP_001499893.1| sun protein [Shewanella pealeana ATCC 700345]
gi|157844859|gb|ABV85358.1| sun protein [Shewanella pealeana ATCC 700345]
Length = 426
Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + + + + D + +GVM
Sbjct: 4 RALAAKVVFQVLEKGISLSVALPDQQRHL------------DSGKDKALLAELCYGVMRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S C++++ + I+ +L G +L +P ISE +
Sbjct: 52 LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127
>gi|237750245|ref|ZP_04580725.1| predicted protein [Helicobacter bilis ATCC 43879]
gi|229374139|gb|EEO24530.1| predicted protein [Helicobacter bilis ATCC 43879]
Length = 368
Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R AR A +Q LY ++ E + + ++ +
Sbjct: 1 MATRKQAREAIIQILYAKELGNDKAIEQAEAFLN-----------AQKIRNKQQDFALNL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+HG+ + ++ I +I+ L W SRL +I +I++ GV EL++ ++ VII+E +
Sbjct: 50 LHGICNEERKIADIINVFLKS-WDLSRLGVIEKNIIKLGVYELLQTNTQK-AVIINEAIE 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSR 155
+ F D + +N +LD V++
Sbjct: 108 LTKSFNVQDAFRLVNGILDSVAK 130
>gi|42519423|ref|NP_965353.1| hypothetical protein LJ1551 [Lactobacillus johnsonii NCC 533]
gi|227890288|ref|ZP_04008093.1| transcription antitermination protein NusB [Lactobacillus johnsonii
ATCC 33200]
gi|268319198|ref|YP_003292854.1| transcription antitermination factor NusB [Lactobacillus johnsonii
FI9785]
gi|41583711|gb|AAS09319.1| hypothetical protein LJ_1551 [Lactobacillus johnsonii NCC 533]
gi|227849102|gb|EEJ59188.1| transcription antitermination protein NusB [Lactobacillus johnsonii
ATCC 33200]
gi|262397573|emb|CAX66587.1| transcription antitermination factor NusB [Lactobacillus johnsonii
FI9785]
gi|329667052|gb|AEB93000.1| hypothetical protein LJP_0669 [Lactobacillus johnsonii DPC 6026]
Length = 133
Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 17 GIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R A+QA+Y + E+ + D ++ +++G
Sbjct: 4 HEMRRIAMQAIYLANQGKLTDAEEVCQKALKALELKDF------------PDYSTELVNG 51
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ K+ +D +S L + W +R++ I +IL + E+ + ++E + +
Sbjct: 52 VLANKEALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIDPVAALNEALNLCD 111
Query: 136 DFFYGDEPKFINAVLDKVSRKE 157
+F + KFIN +L +K+
Sbjct: 112 EFSSKESKKFINGLLANFIKKD 133
>gi|229031495|ref|ZP_04187495.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
gi|228729784|gb|EEL80764.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1271]
Length = 402
Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I++G + R+ +D + L +++ + +LR + ++I VP I
Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIH 56
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E V IA + +N VL + R+
Sbjct: 57 EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84
>gi|169333678|ref|ZP_02860871.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
17244]
gi|169259672|gb|EDS73638.1| hypothetical protein ANASTE_00062 [Anaerofustis stercorihominis DSM
17244]
Length = 450
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
K++K+S +R++A + L ++ + G + ++++ S+ + D
Sbjct: 3 KNIKISP----SRVSAYKVLSEVLMTGAYSNIALTKHLA------------SIKIEADRR 46
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
I+HGV+ + ++ ++S+ + LD + L G+ ++I + +P I+
Sbjct: 47 LCTNIVHGVIKKINKLEYVLSTL--SNTPVNELDERVKISLYIGLYQIIYLNKIPEYAIV 104
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ V + F F+N +L RK+ +
Sbjct: 105 NDSVNLVKMFVGKKASGFVNGILRNALRKKHELK 138
>gi|86609546|ref|YP_478308.1| transcription antitermination protein NusB [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|119390840|sp|Q2JHC7|NUSB_SYNJB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|86558088|gb|ABD03045.1| transcription antitermination factor NusB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 291
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 9/138 (6%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH--------VDLEWFRVIIHGV 76
QAL ++ S I+ E A + V + ++ +
Sbjct: 134 QALEHLEQRLHSVRHILDEVVQLSQRAVNRVGVALSMPELLYIAQSQEVRAYALQLLTAL 193
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
K+ ID + L W R+ I ILR V+E+ S PV+V I+E V +A
Sbjct: 194 RTHKEAIDARLQKALVG-WQLQRVGRIERDILRLAVVEMEILASSPVKVAINEAVELAKK 252
Query: 137 FFYGDEPKFINAVLDKVS 154
+ + F+N VL +V
Sbjct: 253 YGDPEAAAFVNGVLRRVV 270
>gi|210617211|ref|ZP_03291455.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
gi|210149412|gb|EEA80421.1| hypothetical protein CLONEX_03677 [Clostridium nexile DSM 1787]
Length = 177
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R + L ++ G + + + + + G ++R
Sbjct: 8 RELVLGILLEVTRDGEHSHIALRNVLNKY----------QYLDKKERAFITRVTEGTLER 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +I+ +++ ++ +I+R+ V ++ SVP +E V +A +
Sbjct: 58 MIELDYIINQFSKV--KVNKMKPVIRNIIRSAVYQMKYMDSVPNSAACNEAVKLAVKKGF 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ F+N +L + R E
Sbjct: 116 VNLKGFVNGLLRNIDRNLE 134
>gi|306818731|ref|ZP_07452453.1| possible transcription antitermination protein NusB [Mobiluncus
mulieris ATCC 35239]
gi|304648417|gb|EFM45720.1| possible transcription antitermination protein NusB [Mobiluncus
mulieris ATCC 35239]
Length = 182
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 8/136 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+ LY+ + + I R E+ + R I+ G+ + + I
Sbjct: 1 MDVLYEAHLKDLDDSAGIYSLAKLRE-------TETTAQTPMPSYAREILEGIAEHLERI 53
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D + + + WS R+ + +I+R E++ V V I+ + +A + + P
Sbjct: 54 DAAL-ATYSRAWSLHRMPEVDLAIMRVATWEILFNPDVDGPVAITAAMQLAAERSTDESP 112
Query: 144 KFINAVLDKVSRKEEI 159
KFIN +L ++ E
Sbjct: 113 KFINGLLGTINDMREA 128
>gi|319901555|ref|YP_004161283.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
gi|319416586|gb|ADV43697.1| NusB antitermination factor [Bacteroides helcogenes P 36-108]
Length = 308
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + A+ EL E D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE-KNGANQELLPEFK-DDEDQEFARRLFRRTILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|325285045|ref|YP_004260835.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
gi|324320499|gb|ADY27964.1| NusB antitermination factor [Cellulophaga lytica DSM 7489]
Length = 315
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
++ E + D+ + + ++ + I T W R+ I +L+
Sbjct: 197 ESYFLPELLKEDDDMVYAKQLLTKTLLNDAEYVKEIV-GKTPNWDKDRIADIDGILLKMA 255
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ EL+ S+P +V I+E++ IA ++ FIN +LDK+ R+ + +
Sbjct: 256 ICELLNFPSIPEKVTINEFLEIAKEYSTPKSSIFINGILDKLVREYKSE 304
>gi|298490714|ref|YP_003720891.1| NusB antitermination factor ['Nostoc azollae' 0708]
gi|298232632|gb|ADI63768.1| NusB antitermination factor ['Nostoc azollae' 0708]
Length = 213
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
EL + + + II V + + ID +IS L + W +RL I IL+
Sbjct: 108 PELIQLANQDKEVRNYAKEIIITVNENRNVIDQIISDALVD-WQVTRLAQIDRDILQIAA 166
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
E+ VP + I+E V +A + + +FIN VL +V+ +++
Sbjct: 167 AEMKFM-GVPASIAINEAVELAKRYSGDEGHRFINGVLRRVTEQKQT 212
>gi|329955547|ref|ZP_08296455.1| transcription antitermination factor NusB [Bacteroides clarus YIT
12056]
gi|328525950|gb|EGF52974.1| transcription antitermination factor NusB [Bacteroides clarus YIT
12056]
Length = 308
Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ + D E+ R + + + LIS T W R+ + I++ +
Sbjct: 196 NQALLPEFKDDEDQEFARRLFRRTILNCDYYRHLISEN-TRNWDLDRVAFMDVVIMQCAL 254
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
E++ ++PV V ++EYV IA + F+N LD + ++ + +
Sbjct: 255 AEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTLDGIVKELKKE 302
>gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11]
Length = 435
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + VP II+E V IA + +N +L + R
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMR 125
>gi|229174531|ref|ZP_04302063.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
gi|228609091|gb|EEK66381.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MM3]
Length = 402
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I++G + R+ +D + L +++ + +LR + ++I VP I
Sbjct: 2 LTEIVYGTIQRRDTLDYYLQPFLK-----KKVEAWVRVLLRLSLYQMIYLDRVPERAAIH 56
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E V IA + +N VL + R+
Sbjct: 57 EAVEIAKRRGHKGIAGMVNGVLRSIQRE 84
>gi|332293207|ref|YP_004431816.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
gi|332171293|gb|AEE20548.1| NusB antitermination factor [Krokinobacter diaphorus 4H-3-7-5]
Length = 314
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + ++ + ++ + IS T W R+ + +++ + E ++ +
Sbjct: 205 KNDEDLLFGTTLLEKTIANEEFLSSEISEN-TPNWDKERIADVDMVLIKMALCEFLKFPT 263
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+PV+V I+EY+ IA ++ FIN +LDK+ ++ E ++
Sbjct: 264 IPVKVTINEYLEIAKEYSTPKSSIFINGILDKLVKQYESEK 304
>gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46]
Length = 435
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 5/110 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNVMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+L + + + VP II+E V IA + +N +L + R
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGILRTMMR 125
>gi|218129920|ref|ZP_03458724.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
gi|317476859|ref|ZP_07936102.1| transcription antitermination factor NusB [Bacteroides eggerthii
1_2_48FAA]
gi|217988030|gb|EEC54355.1| hypothetical protein BACEGG_01503 [Bacteroides eggerthii DSM 20697]
gi|316907034|gb|EFV28745.1| transcription antitermination factor NusB [Bacteroides eggerthii
1_2_48FAA]
Length = 308
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + + D ++ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFDE--KNGANQPLLPEFKDEEDRDFARRLFRRSILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTTKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + ++ + +
Sbjct: 293 DGIVKELKKE 302
>gi|330447314|ref|ZP_08310964.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491505|dbj|GAA05461.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 426
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + +YQ+ G S + + + D + I +GV+
Sbjct: 4 RATAAKVIYQVVDQGQSLSAALP-------------AAQQDIRERDHALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INA+L R++E + +S
Sbjct: 108 PQLRGLINAILRNYQRQQEELDAKAIS 134
>gi|167621966|ref|YP_001672260.1| sun protein [Shewanella halifaxensis HAW-EB4]
gi|167351988|gb|ABZ74601.1| sun protein [Shewanella halifaxensis HAW-EB4]
Length = 426
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + + + D + +GVM
Sbjct: 4 RALAAKVVFQVLEKGISLSVALPVQQKHL------------DSGKDKALLAELCYGVMRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S C++++ + I+ +L G +L +P ISE +
Sbjct: 52 LPQLDKQVSDCMSKQMKGKQ--RIVHQLLLVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127
>gi|160945218|ref|ZP_02092444.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
M21/2]
gi|158442949|gb|EDP19954.1| hypothetical protein FAEPRAM212_02737 [Faecalibacterium prausnitzii
M21/2]
Length = 443
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV AL + + G + D + I + V++
Sbjct: 6 RAVAVAALVRQEQNG------------FSNLVLDAELKRQKLEGRDKAFASAIFYTVLEH 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D ++ L + ++LD + ILRA + + VPV ++E V + F
Sbjct: 54 RGTLDYILEQFLPKG--LAKLDAPVREILRAALAQARYM-QVPVSAAVNEAVKLTRTFKK 110
Query: 140 GDEPKFINAVLDK 152
+NAVL K
Sbjct: 111 SSASGLVNAVLRK 123
>gi|170724406|ref|YP_001758432.1| sun protein [Shewanella woodyi ATCC 51908]
gi|169809753|gb|ACA84337.1| sun protein [Shewanella woodyi ATCC 51908]
Length = 425
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + E + + D + +GVM +
Sbjct: 4 RALAAKVVFQVLEKGISLSVALPEQQKHCE------------SGKDKALLAELSYGVMRQ 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D LIS C+ + IL +L G +L +P ISE +
Sbjct: 52 LPQLDKLISDCMAK--PLKGKQRILHQLLLVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K INAVL + R+E+
Sbjct: 109 DGLVKVINAVLRNIQRQEK 127
>gi|120436864|ref|YP_862550.1| antitermination protein NusB [Gramella forsetii KT0803]
gi|117579014|emb|CAL67483.1| antitermination protein NusB [Gramella forsetii KT0803]
Length = 337
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+ + + + + T W R+ + +++ + E ++ S
Sbjct: 228 KNEEDKEFAIKLFRKTYLNDEDLSEEML-GKTPNWDKDRIAEVDMVLIKMAICEFLKFTS 286
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+PV+V I+EY+ IA ++ FIN VLDK+S++ + +
Sbjct: 287 IPVKVTINEYLEIAKEYSTPKSSIFINGVLDKLSKEYQTE 326
>gi|113954299|ref|YP_729912.1| sun protein [Synechococcus sp. CC9311]
gi|113881650|gb|ABI46608.1| sun protein [Synechococcus sp. CC9311]
Length = 449
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 14/151 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L + G + ++ D + +G +
Sbjct: 17 ARRLALEVL-EAVAAGAYADVALERALR-----------QNPLSPADRGLATELAYGCIR 64
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+Q +D + + L +L G+ +++ +P + V +A
Sbjct: 65 WRQWLDGWLDRLGKV--PAHKQPPRLRWLLHLGLYQVLRMQRIPASAAVDTTVELAKRQR 122
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+N VL R +E + V +
Sbjct: 123 LSKLSPVVNGVLRSALRAKEAGETLPVPDQS 153
>gi|89074758|ref|ZP_01161216.1| Putative Sun protein [Photobacterium sp. SKA34]
gi|89049522|gb|EAR55083.1| Putative Sun protein [Photobacterium sp. SKA34]
Length = 426
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + +YQ+ G S + + + D + I +GV+
Sbjct: 4 RATAAKVIYQVVDQGQSLSAALP-------------AAQQDIRERDHALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INA+L R++E + +S
Sbjct: 108 PQLRGLINAILRNYQRQQETLDAQAIS 134
>gi|313157987|gb|EFR57393.1| conserved hypothetical protein [Alistipes sp. HGB5]
Length = 311
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 5/129 (3%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
I+ R D ++ R + + I + W R
Sbjct: 181 ILRSLSNLRPTHTELKVPAKFKSDEDPQFVRTLFEKSLVNYDSYQDYIEKFTSN-WDVER 239
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR---- 155
+ + I+ + EL S+PV+V + EY+ I+ + FIN VLDK+
Sbjct: 240 IVFMDNLIIGTAMAELTSFPSIPVKVTLDEYIEISKYYSTPGSSTFINGVLDKIVDSLTA 299
Query: 156 KEEIKRSGC 164
+ IK++G
Sbjct: 300 EGRIKKAGR 308
>gi|189462539|ref|ZP_03011324.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
gi|189430700|gb|EDU99684.1| hypothetical protein BACCOP_03229 [Bacteroides coprocola DSM 17136]
Length = 308
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + + D ++ R + + + LIS ++ W R+ ++ I++
Sbjct: 195 DKQELLPEFKDEEDQDFARRLFRRSILNADYYRHLISEN-SKNWDLDRVAVMDVIIMQIA 253
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ E++ ++P+ V ++EYV IA + FIN LD + + + +
Sbjct: 254 LAEILSFPNIPINVSLNEYVEIAKLYSTPKSGGFINGTLDGIVNQLKKEN 303
>gi|90581174|ref|ZP_01236973.1| Putative Sun protein [Vibrio angustum S14]
gi|90437695|gb|EAS62887.1| Putative Sun protein [Vibrio angustum S14]
Length = 426
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + +YQ+ G S + + + D + I +GV+
Sbjct: 4 RATAAKVIYQVVDQGQSLSAALP-------------AAQQDIRERDHALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESITQALMDK--PLKGKQRVFHHLILVGLYQLGYMR-IPAHAAVAETVNATKTLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INA+L R++E + +S
Sbjct: 108 PQLRGLINAILRNYQRQQEELDTKAIS 134
>gi|282850892|ref|ZP_06260266.1| transcription antitermination factor NusB [Lactobacillus gasseri
224-1]
gi|282557844|gb|EFB63432.1| transcription antitermination factor NusB [Lactobacillus gasseri
224-1]
Length = 133
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+QA+Y + + E + ++++ L ++ I++GV
Sbjct: 4 HEMRRIAMQAIYLANQGNLTNAE-----------EVCQKALKALELKSFPDYSTEIVNGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K+ +D +S L + W +R++ I +IL + E+ + ++E + + +
Sbjct: 53 LANKKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
F + KF+N +L +K+
Sbjct: 113 FSSKESKKFVNGLLANFIKKD 133
>gi|299136400|ref|ZP_07029583.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
gi|298600915|gb|EFI57070.1| Fmu (Sun) domain protein [Acidobacterium sp. MP5ACTX8]
Length = 456
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
K K ARLAA + L ++ + +++ ++ D
Sbjct: 29 KSTQKPLASITPARLAAFEILERVATSSAHSDDLLY------------GSGLALLSQADK 76
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
++ G + + +D I + L + + LR G +L+ +P
Sbjct: 77 NLTTALVLGTLRWQIALDARIKPL--LQRPELTLAQPVQTALRLGAFQLLHMDRIPAHAA 134
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+SE V +A + +NAVL K++
Sbjct: 135 LSESVELARAAGHPYAVGMVNAVLRKLA 162
>gi|281413929|ref|ZP_06245671.1| ribosomal RNA small subunit methyltransferase RsmB [Micrococcus
luteus NCTC 2665]
Length = 305
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 4 QDNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADT 53
QD + + RG AR + QA Q + + + Y
Sbjct: 29 QDRRDAQGRTRNRGRSGAARKYSAQAPSQRSRTADPARRVAFGVVRSVHAEDAYANLVLP 88
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
++ D + + +G + D +++ C+ ++D + LR G
Sbjct: 89 ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+L+ VP + V + F+NAVL +++ + + V+
Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEVGAGASGFVNAVLRRIAERPLEEWLADVAP 199
>gi|310819442|ref|YP_003951800.1| ribosomal RNA small subunit methyltransferase b [Stigmatella
aurantiaca DW4/3-1]
gi|309392514|gb|ADO69973.1| Ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 438
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 13/136 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+Q L ++ ++ DT L D + +G
Sbjct: 3 ARTLAIQVLARVRATDAYLNVVL----------DTALSEAPPRDARDTALATELAYGTTR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D I+ ++ + + LR G +L VP ++E V D
Sbjct: 53 RQLALDYAITRFADR--KLDAMEDRVLAALRIGAYQLFYTR-VPARAAVAETVQALKDLG 109
Query: 139 YGDEPKFINAVLDKVS 154
G F+NA+L K++
Sbjct: 110 VGRAAGFVNAILRKLA 125
>gi|126643397|ref|YP_001086381.1| transcription antitermination protein NusB [Acinetobacter baumannii
ATCC 17978]
Length = 122
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
+ E+ VDL ++ ++ V+ + + +D L+ L + LD + + L
Sbjct: 7 HEIEARTRAENAMHKVDLNYYHELLTQVIAQHEDLDALLIPVLDRE--IDALDGVELATL 64
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
R G EL + +P V++ E + +A F D K+IN VLD++S
Sbjct: 65 RLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLSSTLRSAE 117
>gi|78042686|ref|YP_360313.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77994801|gb|ABB13700.1| sun protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 440
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L +++ ++ + ++ D ++ + +GV+ +
Sbjct: 4 RELVIKTLVEVEKNNSYVNLLLPKLIA------------NLAKKEDKDFVVELTYGVLKQ 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D + L ++ + + +R G+ +L VP I+E V +
Sbjct: 52 LKLLDYMAGKLLKKRSKL---PPFVINAIRVGLYQLYFLDKVPTYAAINETVEAVKRNY- 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+N VL R+ E
Sbjct: 108 RGFTGVVNGVLRNFIRRREE 127
>gi|116629407|ref|YP_814579.1| transcription termination factor [Lactobacillus gasseri ATCC 33323]
gi|311110942|ref|ZP_07712339.1| transcription antitermination factor NusB [Lactobacillus gasseri
MV-22]
gi|116094989|gb|ABJ60141.1| Transcription termination factor [Lactobacillus gasseri ATCC 33323]
gi|311066096|gb|EFQ46436.1| transcription antitermination factor NusB [Lactobacillus gasseri
MV-22]
Length = 133
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+QA+Y + + E + ++++ L ++ I++GV
Sbjct: 4 HEMRRIAMQAIYLANQGNLTNAE-----------EVCQKALKALELKSFPDYSTEIVNGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K+ +D +S L + W +R++ I +IL + E+ + ++E + + +
Sbjct: 53 LANKKALDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
F + KF+N +L +K+
Sbjct: 113 FSSKESKKFVNGLLANFIKKD 133
>gi|254468502|ref|ZP_05081908.1| transcription antitermination factor NusB [beta proteobacterium
KB13]
gi|207087312|gb|EDZ64595.1| transcription antitermination factor NusB [beta proteobacterium
KB13]
Length = 127
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
++ + Y D E++ +I G+ + Q I + + + + L+ I SIL
Sbjct: 16 DIKKDILEDPDYCRCDEEFYNSLIDGIKENYQEILEDLDNFMDK--KKEELNPIELSILV 73
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL +P +V I+E + I F + KF+N LD+V++K
Sbjct: 74 VAYYELKTRVDIPFKVSINEALEITKSFGGQESFKFVNGSLDRVAKKYRALE 125
>gi|299143974|ref|ZP_07037054.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298518459|gb|EFI42198.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 440
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDV-ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
DI + I + F + L + +S D I GV+ K ++ ++S
Sbjct: 3 DIRKKALFIIDNVLYKGAFLNEELLILSKSKIDKRDYNLIVNITTGVVQNKLLLEHIVSK 62
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
K ++ + +IL+ G+ ++ +P II+E V +A F F+N +
Sbjct: 63 YSKIKI--KKIHRTILTILQMGIYQIFFTSRIPDYSIINESVNLAKIFGNQGSAGFVNGL 120
Query: 150 LDKVSRKEEIKRSGC 164
L + R +E
Sbjct: 121 LRNILRDKENIEKSE 135
>gi|294155614|ref|YP_003559998.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
MP145]
gi|291600060|gb|ADE19556.1| transcription anti-termination factor NusB [Mycoplasma crocodyli
MP145]
Length = 150
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 24/151 (15%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+++ R R +Q LY+ ++ I+ ++ + F ++ ++
Sbjct: 1 MEVKKSRRQNREEVIQVLYRFELFNEKIDAAIA-FQEFSFLSNEQV-------------- 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I + + + +I+ L + W++ R+ ++ +IL EL ++P ++I+E
Sbjct: 46 -KFIEKIDNNYDFLKSIIAKFLNQNWAWLRIPPLIKAILINASAELF---TIPPRIVINE 101
Query: 130 YVCIAHDFF-----YGDEPKFINAVLDKVSR 155
V I D+F KF+NA+L V +
Sbjct: 102 AVEITKDYFCMTPDDDKYYKFVNAILQNVYK 132
>gi|294138832|ref|YP_003554810.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
gi|293325301|dbj|BAJ00032.1| ribosomal RNA small subunit methyltransferase B [Shewanella
violacea DSS12]
Length = 425
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + +Q+ G S + + + + + D + +GVM
Sbjct: 4 RALAAKVAFQVLEKGISLSVALPDQQKHLE------------SGKDKALLAELSYGVMRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+S C+++ I+ +L G +L +P ISE +
Sbjct: 52 LPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127
>gi|296129702|ref|YP_003636952.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
gi|296021517|gb|ADG74753.1| Fmu (Sun) domain protein [Cellulomonas flavigena DSM 20109]
Length = 509
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 56/158 (35%), Gaps = 14/158 (8%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ + AR AA L + ++ R D +
Sbjct: 39 PARRARTSDPARAAAYDTLRAVAESEAYANLVLPPLLRER-----------GLAGRDAAF 87
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +G + + D +++ + +D + +LR G +L+ VP +S
Sbjct: 88 ATELAYGTLRLRGRYDAVLAQASSR--PLDEVDPPVLDVLRLGAHQLLGMR-VPAHAAVS 144
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
E V +A + +F+NAVL +V+ + + V+
Sbjct: 145 ETVGLARERVGAGAAQFVNAVLRRVAERPLEEWLTRVA 182
>gi|297621030|ref|YP_003709167.1| nusB putative transcription antitermination factor, NusB family
[Waddlia chondrophila WSU 86-1044]
gi|297376331|gb|ADI38161.1| nusB putative transcription antitermination factor, NusB family
[Waddlia chondrophila WSU 86-1044]
Length = 145
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
++++ + R Q LY D E + + E+ +
Sbjct: 2 IQMAVPQQKIREIVFQLLYGHDWH-SPEKEAFHTFLS----------KEAKISKKVILEA 50
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + R++ +D LI + ++F R+ + +ILR G+ EL+ +P +V I+E
Sbjct: 51 QERVDLIRGREKELDQLIGES-AKSYAFDRIPRVERNILRLGIYELLFDEQIPPKVAIAE 109
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ + F + FINA++D++ +K
Sbjct: 110 AIRLGRKFSTPESATFINAIMDELYQKR 137
>gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
Length = 448
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 18/148 (12%)
Query: 12 LSHRRGI---ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ ++ AR A+ L + + Y + D
Sbjct: 1 MTKKQSQLTGARAIALATL-----------DKVRTSGAYSNLQLNQALESGQLSGADRRL 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G + ++ +D +S + ++ + ++L + + VP
Sbjct: 50 VTALVYGTLQHQRTLDYWLSPFIAG----KKVRPWVKTLLLMTLFQYQYLDRVPNFAATD 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + IA +F+ VL + R
Sbjct: 106 EAIEIAKRRGNPGVRRFVTGVLHAILRN 133
>gi|71904040|ref|YP_280843.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS6180]
gi|71803135|gb|AAX72488.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS6180]
Length = 452
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 30 IDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
I I G + + ++ Y A + D I++G + RK ++ +
Sbjct: 19 ISIRGKALLTLEHIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYL 78
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFI 146
+ + ++ + +L + +LI +P I+++ V IA + KF+
Sbjct: 79 AHYVKDRDKLDKWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFV 135
Query: 147 NAVLDKV 153
NA+L +
Sbjct: 136 NAILRQF 142
>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
Length = 435
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 7/126 (5%)
Query: 32 IIGCSTTEIISEYET--YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
I G + I + + Y E+ +D F +++G + RK +D +
Sbjct: 5 IRGLAFETIQAILDEGAYSNLEINEVLSTYEISDLDKGLFTELVYGTVKRKYTLDFYLKP 64
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
L K + +L + + + VP II+E V IA + +N +
Sbjct: 65 FLKTKIK-----GWVRELLWMSIYQYVYLDKVPNHAIINEAVEIAKEEGGYYTGNVVNGI 119
Query: 150 LDKVSR 155
L + R
Sbjct: 120 LRTIMR 125
>gi|171912374|ref|ZP_02927844.1| RsmB [Verrucomicrobium spinosum DSM 4136]
Length = 414
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A+Q L + + ++I + H D + ++ G +
Sbjct: 7 NSRQLALQILVEWERSEIYAADLIE-----------KAAATHRLDHRDTALLQTLVMGTL 55
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D+ + L+ + +LR G+ +L+ +P +++E V A
Sbjct: 56 RNIDLLDIWLERVCDN----QHLETSVHWLLRLGIAQLL-LLEMPAHAVVNETVNQA--- 107
Query: 138 FYGDEPKFINAVLDKVSRKE 157
G +NAVL +V R+
Sbjct: 108 --GKARGLVNAVLRRVDRER 125
>gi|324991771|gb|EGC23703.1| RNA methyltransferase Sun [Streptococcus sanguinis SK353]
Length = 438
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E +
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFANALLRRIERE 130
>gi|227495439|ref|ZP_03925755.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
15436]
gi|226830986|gb|EEH63369.1| 16S rRNA m(5)C 967 methyltransferase [Actinomyces coleocanis DSM
15436]
Length = 487
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 14/150 (9%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ + R AR A + L ++D+ ++ + E+
Sbjct: 16 NDSRGRSKQARVSKARTVAFETLLKVDVEDAYANIVL-----------PKAITEANLDSR 64
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + +++G + +D +I C+ + LD + +ILR +++ VP
Sbjct: 65 DASFATELVYGTLRNLARVDWVIEQCM--PKKIADLDPEVRAILRLTAHQILHLR-VPDH 121
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++E V + KF+N V +
Sbjct: 122 AAVAESVELTKHVAGFGVEKFVNGVARAMV 151
>gi|323127837|gb|ADX25134.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 440
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 30 IDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
I I G + + ++ Y A + D I++G + RK ++ +
Sbjct: 7 ISIRGKALLTLEHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYL 66
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFI 146
+ + ++ + +L + +LI +P I+++ V IA + KF+
Sbjct: 67 AHYVKDRDKLDKWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFV 123
Query: 147 NAVLDKV 153
NA+L +
Sbjct: 124 NAILRQF 130
>gi|322412409|gb|EFY03317.1| Putative RNA-binding Sun protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 440
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 30 IDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
I I G + + + ++ Y A + + D I++G + RK ++ +
Sbjct: 7 ISIRGKALLTLENIFDQGAYTNIALNQQLSNKAFSAKDRALLTEIVYGTVSRKISLEWYL 66
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFI 146
+ + ++ + +L + +LI +P I+++ V IA + KF+
Sbjct: 67 AHYVKDRDKLDKWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFV 123
Query: 147 NAVLDKV 153
NA+L +
Sbjct: 124 NAILRQF 130
>gi|251783087|ref|YP_002997390.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242391717|dbj|BAH82176.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 452
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 30 IDIIGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
I I G + + ++ Y A + D I++G + RK ++ +
Sbjct: 19 ISIRGKALLTLEHIFDQGAYTNIALNQQLSNKALSTKDRALLTEIVYGTVSRKISLEWYL 78
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFI 146
+ + ++ + +L + +LI +P I+++ V IA + KF+
Sbjct: 79 AHYVKDRDKLDKWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFV 135
Query: 147 NAVLDKV 153
NA+L +
Sbjct: 136 NAILRQF 142
>gi|238852556|ref|ZP_04642966.1| transcription antitermination factor NusB [Lactobacillus gasseri
202-4]
gi|238834702|gb|EEQ26929.1| transcription antitermination factor NusB [Lactobacillus gasseri
202-4]
Length = 133
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+QA+Y + + E + ++++ L ++ I++GV
Sbjct: 4 HEMRRIAMQAIYLANQGNLTDAE-----------EVCQKALKALELKSFPDYSTEIVNGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K+ +D +S L + W +R++ I +IL + E+ + ++E + + +
Sbjct: 53 LANKKVLDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKVIEPVAALNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
F + KFIN +L +K+
Sbjct: 113 FSSKESKKFINGLLANFIKKD 133
>gi|153953997|ref|YP_001394762.1| hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
gi|219854611|ref|YP_002471733.1| hypothetical protein CKR_1268 [Clostridium kluyveri NBRC 12016]
gi|146346878|gb|EDK33414.1| Hypothetical protein CKL_1372 [Clostridium kluyveri DSM 555]
gi|219568335|dbj|BAH06319.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 443
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R +A + LY Y + + D
Sbjct: 1 MNSARSVAVEVVKKVLY---------------DNAYSSIVLNKYLNKFDLNKKDRALITE 45
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + K ID ++ + + + +++ + ++LR + +L +P +++E V
Sbjct: 46 LVYGTLKYKYTIDCILKNFIKS--NLEKMNKDILNMLRISICQLRYLDKIPEFAVVNEAV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ + + K +N VL R +
Sbjct: 104 EFSKNISF-KLSKLVNGVLRNYLRNK 128
>gi|305664845|ref|YP_003861132.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
gi|88707967|gb|EAR00206.1| putative N utilization substance protein [Maribacter sp. HTCC2170]
Length = 304
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+++ + ++ + + I T W R+ I +L+ + EL+ S
Sbjct: 195 KDNEDMDFAQKLLTKTLLNNSKWEKEI-EGKTPNWDKDRIADIDAILLKMAICELLNFPS 253
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+P +V I+E++ IA ++ FIN +LDK+ ++ + +
Sbjct: 254 IPEKVTINEFLEIAKEYSTPKSSIFINGILDKLVKEYKTE 293
>gi|186684748|ref|YP_001867944.1| sun protein [Nostoc punctiforme PCC 73102]
gi|186467200|gb|ACC83001.1| sun protein [Nostoc punctiforme PCC 73102]
Length = 487
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 14/140 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A AL D+ + ++ A + + D +++G
Sbjct: 2 TNPRQLAFIAL--RDVHKGAYADV----------ALDRVLQKVNLPDRDRRLVTELVYGS 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D LI K + L +IL G +L +P ++ V +A +
Sbjct: 50 VRRQRTLDTLIDQFAKNKS--HQQPQDLRTILHLGFYQLRYQERIPASAAVNTTVQLAKE 107
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+ F+N +L + RK
Sbjct: 108 NGFSGLTGFVNGLLRQYLRK 127
>gi|282882115|ref|ZP_06290756.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
gi|281298145|gb|EFA90600.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
lacrimalis 315-B]
Length = 430
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
+ +S D + + I GV+ + ++D +I + K F ++ I+ I
Sbjct: 21 FLEEQLNIIKQSNISDRDFTFIKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAII 78
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV-SRKEEIKR 161
L + + +P I+ E V +A + F+NA+L + S+ +E+ +
Sbjct: 79 LEMAIYQYYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDKEVVK 133
>gi|163751682|ref|ZP_02158901.1| sun protein [Shewanella benthica KT99]
gi|161328421|gb|EDP99577.1| sun protein [Shewanella benthica KT99]
Length = 425
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + +Q+ G S + + + + + D + +GVM
Sbjct: 4 RALAARVAFQVLEKGTSLSVALPDQQQHLE------------SGKDKALLAELSYGVMRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+S C+++ I+ +L G +L +P ISE +
Sbjct: 52 LPQLDKLVSDCMSK--PLKGKQRIVHQLLLIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R+E+
Sbjct: 109 EGLVKVVNGVLRNIQRQEK 127
>gi|22096363|sp|P74395|NUSB_SYNY3 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
Length = 221
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
++ +I V R+Q ID + + + W SRL I ILR + EL VP +V
Sbjct: 120 RKFALELIGTVCRRRQQIDEQLQEAMVD-WQLSRLAKIDQDILRLAIAELDYL-GVPQKV 177
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
I+E V +A + D +FIN VL +V+ K+
Sbjct: 178 AINEAVELAKRYSGQDGHRFINGVLRRVTEKK 209
>gi|332358059|gb|EGJ35892.1| RNA methyltransferase Sun [Streptococcus sanguinis SK1056]
Length = 438
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E +
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFANALLRRIERE 130
>gi|224026161|ref|ZP_03644527.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
18228]
gi|224019397|gb|EEF77395.1| hypothetical protein BACCOPRO_02917 [Bacteroides coprophilus DSM
18228]
Length = 308
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + + D E+ R + + + LIS ++ W +R+ ++ I++
Sbjct: 195 DKQELLPEFKDEEDQEFARRLFRRTILNADYYRHLISEG-SKNWDLNRVAVMDVVIMQIA 253
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ E++ ++PV V ++EYV IA + FIN LD + + + +
Sbjct: 254 LAEILSFPNIPVNVSLNEYVEIAKLYSTPKSGGFINGTLDGIVNQLKKEN 303
>gi|146329596|ref|YP_001209088.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
gi|146233066|gb|ABQ14044.1| rRNA SAM-dependent methyltransferase, Fmu [Dichelobacter nodosus
VCS1703A]
Length = 418
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA + L+ + S +++ + ++ +D ++ +++G +
Sbjct: 2 KAREAAARTLFAVIEQRQSLNQLLPAF-------------KNQLPDIDRALYQELVYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + L + + + IL G+ +L+ V + E V +
Sbjct: 49 REYRSLSFLHNRL--LHQPLDKNPLPA-IILNLGIYQLLRLTLGDHGV-VHETVELCKKL 104
Query: 138 FYGDEPKFINAVLDKVSRKE 157
NAVL +V R+
Sbjct: 105 RCPAVSGLTNAVLRRVQRER 124
>gi|282858295|ref|ZP_06267480.1| transcription antitermination factor NusB [Prevotella bivia
JCVIHMP010]
gi|282588926|gb|EFB94046.1| transcription antitermination factor NusB [Prevotella bivia
JCVIHMP010]
Length = 337
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
AD EL E + D ++ + + + +S + W FSRL + I
Sbjct: 191 ANGADQELLPEFKDI-ADRQFAIDLFRSTIMNAETYQQYMSEA-SHNWDFSRLAYMDVVI 248
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++ + E++ ++P+ V I+EYV +A + +IN +LD ++R
Sbjct: 249 MQIAIAEIVNFPNIPISVSINEYVNLAKLYSTPRSGGYINGMLDSIAR 296
>gi|149910330|ref|ZP_01898973.1| Putative Sun protein [Moritella sp. PE36]
gi|149806578|gb|EDM66546.1| Putative Sun protein [Moritella sp. PE36]
Length = 431
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R +A + LYQ+ G S T + + + D + I +GV+
Sbjct: 2 KTRASAAKVLYQVVDKGQSLTTALPI-------------AQQLLPAKDRALLQEICYGVL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ + +++ + ++ G+ +L +P ++E V
Sbjct: 49 RWLPRLEFMSRQLMSK--PLIGKQRPVHFLILVGLYQLKYMR-IPAHAAVAETVNAIKVL 105
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162
+NA+L R+++ +
Sbjct: 106 KSPKLSGLVNAILRNYQRQQDDLET 130
>gi|325686917|gb|EGD28941.1| RNA methyltransferase Sun [Streptococcus sanguinis SK72]
gi|327467211|gb|EGF12715.1| RNA methyltransferase Sun [Streptococcus sanguinis SK330]
Length = 438
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 15/145 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++ AR A++ L ++ G Y A +S D
Sbjct: 1 MESKQKTARWQALEILEEVFEEG-----------AYSNIALNRALSQSPLSQADKGLVTE 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + RK ++ +S + ++ D L +L + +++ +P + E +
Sbjct: 50 LVYGTVARKITLEWYLSHLIEDRDKL---DNWLYILLMLSLYQMLYLDKIPQHAAVHEAI 106
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRK 156
IA KF NA+L ++ R+
Sbjct: 107 EIAKIRK-RGSEKFANALLRRIERE 130
>gi|213965561|ref|ZP_03393755.1| Fmu protein [Corynebacterium amycolatum SK46]
gi|213951720|gb|EEB63108.1| Fmu protein [Corynebacterium amycolatum SK46]
Length = 485
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L D+ Y +L D + + +G +
Sbjct: 45 RKVALKVL--ADVRENDA---------YANLLLPKLLKAHKLKGRDAAFATELTYGTLRA 93
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I + + S + + +LR G +L+ V + V
Sbjct: 94 EGLLDAVIEA--SSSRPLSDIAGPVMDVLRLGTYQLL-RTRVDAYAAVDTSVRSVAKVAG 150
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NA+L KVS + E + ++
Sbjct: 151 PGARGFVNAILRKVSSQTESEWVSEIAP 178
>gi|325672533|ref|ZP_08152229.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
gi|325556410|gb|EGD26076.1| RNA methyltransferase Sun [Rhodococcus equi ATCC 33707]
Length = 495
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 18/159 (11%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ R AR + E + Y L E D
Sbjct: 48 SIDQPRRAAR---------------DVLRAVRERDAYANLVLPGLLRERRLDGRDAALAT 92
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +G + +D +I+ C +D L +L G +L+ P ++
Sbjct: 93 ELAYGAARARGLLDAVIAEC--AGRPVEEIDGPLLDVLELGAYQLLRTRIAP-HAAVATS 149
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V + + F+NAVL +VS K E + ++
Sbjct: 150 VDLVRAEAGPGKAGFVNAVLRRVSEKTEDEWVARLAPDA 188
>gi|15675503|ref|NP_269677.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes M1
GAS]
gi|13622700|gb|AAK34398.1| putative RNA-binding Sun protein [Streptococcus pyogenes M1 GAS]
Length = 440
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +L +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|254797209|ref|YP_003082050.1| putative N utilization substance protein B [Neorickettsia risticii
str. Illinois]
gi|254590448|gb|ACT69810.1| putative N utilization substance protein B [Neorickettsia risticii
str. Illinois]
Length = 141
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + +ARL +++ Y E+IS EL DL
Sbjct: 1 MPSEKRVARLLSIEVCYSSYFSDLPQPELISRAL--------ELQEVPYMRRYDLGLLNS 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I+ + LI L+E+W R+D + S+LR + EL + ++I+EYV
Sbjct: 53 ILGLCFANIKADTELIGRFLSEEWEIDRMDNLKLSLLRVAISELRLSNIAQKNLVINEYV 112
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ F E FINA+L+K++ + + K
Sbjct: 113 SLGRLFLPVKEVGFINAILEKLTSEIQGK 141
>gi|261367358|ref|ZP_05980241.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
variabile DSM 15176]
gi|282570118|gb|EFB75653.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
variabile DSM 15176]
Length = 437
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 13/135 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+AL + G Y A+ + D + I + V++
Sbjct: 4 RRLAVKALLHQEQAG---------YANLVLDAELKKCT-PPLEGRDAAFAARIFYTVLEY 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L+ + +RLD + +ILRAG+ + VP+ ++E V +
Sbjct: 54 QPLLDFLLDRFSKK--PVARLDAPVRAILRAGLAQARFME-VPLPAAVNESVKLTKAMGK 110
Query: 140 GDEPKFINAVLDKVS 154
+NAVL + +
Sbjct: 111 TSAAGMVNAVLRRAA 125
>gi|170077553|ref|YP_001734191.1| transcription antitermination protein NusB [Synechococcus sp. PCC
7002]
gi|254772663|sp|B1XIZ3|NUSB_SYNP2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|169885222|gb|ACA98935.1| transcription antitermination factor NusB [Synechococcus sp. PCC
7002]
Length = 213
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A AL ++ + + E F T + I+ +
Sbjct: 80 ARTMAADAL---ELTRAAINRLGHVVELPEFLQLTRQHE-------VRNFALEILTTLRR 129
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R I +I L + W + RL + ILR V E++ P +V I+E V +A +
Sbjct: 130 RNDQIKEVIDGSLVD-WQYHRLPRLDRDILRIAVAEILFLE-TPYKVAINEAVELAKRYS 187
Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
D +FIN VL +VS + + S
Sbjct: 188 DEDGHRFINGVLRRVSDRLRAEDS 211
>gi|325104804|ref|YP_004274458.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
gi|324973652|gb|ADY52636.1| NusB antitermination factor [Pedobacter saltans DSM 12145]
Length = 313
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH------VDLEWFRVIIH 74
A AL + I +++ E+D S D E+ + H
Sbjct: 158 ELAQNALEEKHINWQVDQDVLQAMVAKTLKNFDEVDGNSKLAQISSNWIEDREFIIDLFH 217
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ +I + T+ W R+ M+ I++ + ELI S+PV+V I+EY+ IA
Sbjct: 218 KTLANDASCQEMI-AGKTKNWEADRIAMMDILIMKMALAELIYFSSIPVKVTINEYLEIA 276
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIKR 161
+F FIN +LDK+ + + +
Sbjct: 277 KEFSTPKSNVFINGILDKILGELQAQN 303
>gi|160873155|ref|YP_001552471.1| sun protein [Shewanella baltica OS195]
gi|160858677|gb|ABX47211.1| sun protein [Shewanella baltica OS195]
gi|315265380|gb|ADT92233.1| sun protein [Shewanella baltica OS678]
Length = 428
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|319950547|ref|ZP_08024457.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
gi|319435797|gb|EFV91007.1| transcription antitermination protein NusB [Dietzia cinnamea P4]
Length = 189
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V L++ ++ ++ E + ES H + I+ GV +R +
Sbjct: 21 VSLLFEAELRDADVVQLAEERRR--------MGEESQEFHDVAPYTMEIVTGVAERLDRL 72
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDE 142
D IS L +W+ RL + ++LRA EL+ V V+I + V + D
Sbjct: 73 DSTISEHL-REWTLERLPAVDRAVLRAAAWELLFGSDEVDAAVVIDQAVLLVSDLSAEKS 131
Query: 143 PKFINAVLDKVSRKEEIKRSGC 164
++NAVLD+V+ + R+
Sbjct: 132 VPYVNAVLDRVAGLAQHIRAAE 153
>gi|227513475|ref|ZP_03943524.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
gi|227083348|gb|EEI18660.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus buchneri
ATCC 11577]
Length = 444
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L + + +Y + + VD F I++GV+
Sbjct: 9 RELAVRTL------------LRTSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQH 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ++ + L + + + + +L + +L VP I E + IA +
Sbjct: 57 RMTLEYQLVPFLKDP---EKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGH 113
Query: 140 GDEPKFINAVLDKVSRK 156
+F+ +L ++ RK
Sbjct: 114 DGTRRFVTGILHQMDRK 130
>gi|254519240|ref|ZP_05131296.1| sun protein [Clostridium sp. 7_2_43FAA]
gi|226912989|gb|EEH98190.1| sun protein [Clostridium sp. 7_2_43FAA]
Length = 439
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 16/147 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A Q + ++ G + ++S D I++G +
Sbjct: 2 KSRKLARQIIQRVLEEGAYSNLVLSNELNNI-----------DIEDKDKGLITEIVYGTL 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
RK+ +D+LI + + + +D + +ILR + ++ +P +E V A +
Sbjct: 51 RRKRTLDVLIGNFVK---DINLIDTTVLNILRVAIYQMYFLDKIPEYAACNEAVEEAKEV 107
Query: 138 FYGDEPKFINAVLDKVSR-KEEIKRSG 163
K +N +L + ++EI G
Sbjct: 108 SLE-ASKLVNGILRNYIKDEKEIVVPG 133
>gi|54025577|ref|YP_119819.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
gi|54017085|dbj|BAD58455.1| putative RNA-binding Sun protein [Nocardia farcinica IFM 10152]
Length = 627
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 16/165 (9%)
Query: 5 DNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ K + R I R A++ L + E Y +L +
Sbjct: 173 PGRTGPKNAAGRSIDPPREVALEVL-----------RAVRERAAYANLVLPKLLRDRRID 221
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + +G + +D +I++C +++D L +LR GV +L+ +
Sbjct: 222 GRDAALATELAYGACRAQGLLDAVIAAC--AGRPVAQIDGPLLDVLRLGVYQLL-RTRIG 278
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ V +A F + F+NAVL + +R+ + ++
Sbjct: 279 AHAAVDTSVGLARAEFGAGKSGFVNAVLRQAARRTAQEWVEELAP 323
>gi|86133163|ref|ZP_01051745.1| NusB family protein [Polaribacter sp. MED152]
gi|85820026|gb|EAQ41173.1| NusB family protein [Polaribacter sp. MED152]
Length = 312
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D ++ + M + + + I+ T W R+ I +++ + E + S
Sbjct: 203 KDKDDEDFVADLFRKTMLKHKTYEQDITDK-TPNWETDRIADIDMILIKMAITEFVNFPS 261
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+PV V I+EY+ IA D+ FIN VLDK+S++
Sbjct: 262 IPVRVTINEYIEIAKDYSTTKSSYFINGVLDKISKE 297
>gi|21910907|ref|NP_665175.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS315]
gi|28895403|ref|NP_801753.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes SSI-1]
gi|71911150|ref|YP_282700.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|209559767|ref|YP_002286239.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
gi|306826944|ref|ZP_07460244.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes ATCC 10782]
gi|21905113|gb|AAM79978.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS315]
gi|28810649|dbj|BAC63586.1| putative RNA-binding Sun protein [Streptococcus pyogenes SSI-1]
gi|71853932|gb|AAZ51955.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS5005]
gi|209540968|gb|ACI61544.1| Putative RNA-binding Sun protein [Streptococcus pyogenes NZ131]
gi|304430962|gb|EFM33971.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
pyogenes ATCC 10782]
Length = 440
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +L +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum CECT 5716]
Length = 448
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 4/111 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + D +++G + ++ +D +S + ++ +
Sbjct: 27 AYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTLDYWLSPFIAG----KKVRPWVK 82
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++L + + VP E + IA +F+ VL + R
Sbjct: 83 TLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVRRFVTGVLHAILRN 133
>gi|94988962|ref|YP_597063.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94992855|ref|YP_600954.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS2096]
gi|94542470|gb|ABF32519.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS9429]
gi|94546363|gb|ABF36410.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS2096]
Length = 440
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +L +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|313676012|ref|YP_004054008.1| nusb antitermination factor [Marivirga tractuosa DSM 4126]
gi|312942710|gb|ADR21900.1| NusB antitermination factor [Marivirga tractuosa DSM 4126]
Length = 382
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
LY + + ++ + EL S D E+F+ + ++
Sbjct: 235 LY-WEENKSALKSMLKKTIKSIDEDTQHLELIELSANWEDDSEFFKDLFTNTINN-DDEY 292
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
I S + W+ R+ ++ IL+ V E++ S+PV+V I+EY+ ++ ++
Sbjct: 293 EKIVSDFAKNWASERIAIVDMIILKMAVSEMLNFPSIPVKVTINEYIELSKNYSTQKSKI 352
Query: 145 FINAVLDKVS----RKEEIKRSGC 164
F+N +LDK+S + +IK+SG
Sbjct: 353 FVNGMLDKISAKLEKDGKIKKSGR 376
>gi|255563540|ref|XP_002522772.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
gi|223538010|gb|EEF39623.1| ribosomal RNA small subunit methyltransferase B, putative [Ricinus
communis]
Length = 527
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 27/180 (15%)
Query: 1 MTIQDNKKDLKLSHRRGIARL-------------------AAVQA--LYQIDIIGCSTTE 39
M ++ +K+ K R AV A L +I++ G
Sbjct: 22 MPLKFSKRANKPKKSLSAPRKGPVSPLKKTQKLNLEVSPHRAVSAVRLMRIEMGGAFADL 81
Query: 40 IISE-----YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ + + T DL ++ G + ++ +D LI S ++
Sbjct: 82 LNEKGKGSGENEMGYVERTLGFRTKNLDDRDLRLVTDVVGGTIRWRRFLDHLICSLFHDE 141
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+F ++ +L ILR G E+++ P V + E V +A +N +L K+
Sbjct: 142 NTFRSMEPLLLQILRIGAYEIVKLDMPPYAV-VDENVRLAKVALRPGAGNMVNGILRKLV 200
>gi|50914729|ref|YP_060701.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|139473325|ref|YP_001128040.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes str.
Manfredo]
gi|50903803|gb|AAT87518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10394]
gi|134271571|emb|CAM29796.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus pyogenes str. Manfredo]
Length = 440
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +L +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|82621723|gb|ABB86539.1| NusB [uncultured Bacteroidetes bacterium 'SBI2-18 P41A3']
Length = 325
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+ +I V++ K+ + IS T W R+ I +L+ + E + S
Sbjct: 204 KNDEDAEFGIELIKYVIENKEMLQDEISKV-TPNWDNERIAQIDLILLQMCLSEFLFFKS 262
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+P++V I+EY+ IA ++ FIN ++D +S++ E +
Sbjct: 263 IPLKVSINEYLEIAKEYSSDKSNIFINGIMDSLSKQFENE 302
>gi|94994842|ref|YP_602940.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
gi|94548350|gb|ABF38396.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10750]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSSKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +LI +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|150024632|ref|YP_001295458.1| N utilization substance protein B [Flavobacterium psychrophilum
JIP02/86]
gi|149771173|emb|CAL42640.1| N utilization substance protein B homolog (NusBprotein)
[Flavobacterium psychrophilum JIP02/86]
Length = 303
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D E+ + V Q + + T W R+ I IL+ + E ++ S+PV
Sbjct: 197 EDKEFVGNLFRKVALNDQQLAKE-FADKTPNWEADRIAEIDTIILKMAICEFLKFPSIPV 255
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+V I+EY+ +A ++ FIN +LD + ++ E
Sbjct: 256 KVTINEYLELAKEYSTPKSSIFINGILDNLVKEFESN 292
>gi|254423258|ref|ZP_05036976.1| transcription antitermination factor NusB, putative [Synechococcus
sp. PCC 7335]
gi|196190747|gb|EDX85711.1| transcription antitermination factor NusB, putative [Synechococcus
sp. PCC 7335]
Length = 281
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 17/167 (10%)
Query: 1 MTIQDNKKDLKLSHRR--GIAR--LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M Q K++ + A+ AA Q L + + S+ ++ A +
Sbjct: 112 MFSQQTSKEMTAVRKSLESAAKSVEAADQLLREHQQKVADIETVRSQIQSAIITAKLTIT 171
Query: 57 VESVYLHVD-----------LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
L + + ++ + ++ ID ++ + EKWS RL +
Sbjct: 172 KIKTTLEPEQLVALLSRDDIRGYACELLGNWISYQKAIDAQLNEAM-EKWSIRRLARVDR 230
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
ILR ++E++ VP +V I E + +A + D +FIN VL +
Sbjct: 231 DILRLAMIEIVYMD-VPKKVAIDEAIEMAKRYSDEDGYRFINGVLRR 276
>gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
Length = 448
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 4/111 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + D +++G + ++ +D +S + ++ +
Sbjct: 27 AYSNLQLNQALESGQLSGADRRLVTALVYGTLQHQRTLDYWLSPFIAG----KKVRPWVK 82
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++L + + VP E + IA +F+ VL + R
Sbjct: 83 TLLLMTLFQYQYLDRVPNFAATDEAIEIAKRRGNPGVRRFVTGVLHAILRN 133
>gi|198277117|ref|ZP_03209648.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
gi|198269615|gb|EDY93885.1| hypothetical protein BACPLE_03325 [Bacteroides plebeius DSM 17135]
Length = 308
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-HVDLEWFRVIIHGVMDRKQHI 83
Q+LY D T ++ + + + ++ + D ++ R + + +
Sbjct: 167 QSLYWNDDKEIVDTFVLKTIKRFNPENGEKQELLPEFKDEEDQDFARRLFRRSILNADYY 226
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
LIS ++ W SR+ ++ I++ + E++ ++PV V ++EYV IA +
Sbjct: 227 RHLISEN-SKNWDLSRVAVMDVIIMQIALAEILSFPNIPVNVSLNEYVEIAKLYSTPKSG 285
Query: 144 KFINAVLDKVSRKEEIKR 161
FIN LD + + + +
Sbjct: 286 GFINGTLDGIVNQLKKEN 303
>gi|257466839|ref|ZP_05631150.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A EL V+ + + + +GV+ K ++D +IS + E L
Sbjct: 18 KYSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKK-----DWLQ 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEEIK 160
+ R ++ S V I E V +A + +F+N VL R +E +K
Sbjct: 73 QLFRLSFYQIRFMKSDDKGV-IWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEENLK 131
Query: 161 RSGC 164
R G
Sbjct: 132 REGR 135
>gi|227524617|ref|ZP_03954666.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
gi|227088292|gb|EEI23604.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus hilgardii
ATCC 8290]
Length = 444
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L + + +Y + + VD F I++GV+
Sbjct: 9 RELAVRTL------------LRTSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQH 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ++ + L + + + + +L + +L VP I E + IA +
Sbjct: 57 RMTLEYQLVPFLKDS---EKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGH 113
Query: 140 GDEPKFINAVLDKVSRK 156
+F+ +L ++ RK
Sbjct: 114 DGTRRFVTGILHQMDRK 130
>gi|126172286|ref|YP_001048435.1| sun protein [Shewanella baltica OS155]
gi|125995491|gb|ABN59566.1| sun protein [Shewanella baltica OS155]
Length = 428
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|195978660|ref|YP_002123904.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975365|gb|ACG62891.1| 16S rRNA m(5)C 967 methyltransferase RsmB [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 442
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 33 IGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
G + + ++ Y A D I++G + RK ++ ++
Sbjct: 12 RGQALLIVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHY 71
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAV 149
+ ++ + +L + +L VP I+++ V +A +G K +NAV
Sbjct: 72 IEDRDRLDKWVYY---LLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAV 128
Query: 150 LDKVSRK 156
L +++ K
Sbjct: 129 LRQLTNK 135
>gi|94990962|ref|YP_599062.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10270]
gi|94544470|gb|ABF34518.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS10270]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +LI +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|19746552|ref|NP_607688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus pyogenes
MGAS8232]
gi|19748764|gb|AAL98187.1| putative RNA-binding Sun protein [Streptococcus pyogenes MGAS8232]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +LI +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLIYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|117928484|ref|YP_873035.1| Fmu (Sun) domain-containing protein [Acidothermus cellulolyticus
11B]
gi|117648947|gb|ABK53049.1| Fmu (Sun) domain protein [Acidothermus cellulolyticus 11B]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 15/148 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L + + Y + D +++G +
Sbjct: 8 RQIALDVL-----------GAVRRRDAYANLLLPARLDAAGPAGRDAALATELVYGTLRL 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
D ++ CL + +LR GV +L+ V + E V +A
Sbjct: 57 LGTYDAVLDRCLPRPDRLHP---RVRDVLRLGVHQLLGMR-VDPHAAVYESVELARRTGG 112
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ +NAVL +++ ++ V+
Sbjct: 113 AVAARLVNAVLRRIADRDLESWLAEVTP 140
>gi|227510466|ref|ZP_03940515.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227190118|gb|EEI70185.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 444
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L + + +Y + + VD F I++GV+
Sbjct: 9 RELAVRTL------------LRTSGGSYSNLQINAVIESTSMSDVDKALFTNIVYGVIQH 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ++ + + + + +L + +L VP I E + IA +
Sbjct: 57 RMTLEYQLVPF---LRDPEKTEDWVKELLYTAMYQLEYLDRVPKRAIFDESIKIAKSMGH 113
Query: 140 GDEPKFINAVLDKVSRK 156
+F+ +L ++ RK
Sbjct: 114 DGTRRFVTGILHQMDRK 130
>gi|304412733|ref|ZP_07394336.1| sun protein [Shewanella baltica OS183]
gi|307305802|ref|ZP_07585548.1| sun protein [Shewanella baltica BA175]
gi|304348943|gb|EFM13358.1| sun protein [Shewanella baltica OS183]
gi|306911295|gb|EFN41721.1| sun protein [Shewanella baltica BA175]
Length = 428
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|257470180|ref|ZP_05634271.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
49185]
gi|317064397|ref|ZP_07928882.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
49185]
gi|313690073|gb|EFS26908.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium ulcerans ATCC
49185]
Length = 432
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + E+ + + + +GV+ +K +D I+ ++ +
Sbjct: 18 KYSNIALNDYFRENTLNRKERGFITELFYGVIRKKIFLDYEINKRVSTIKK-----DWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++LR + ++ S V + E +A F KF+N VL R+ E
Sbjct: 73 NLLRISIYQITFMKSDNKGV-VWEASELAKKKFGVPVGKFVNGVLRGYLREME 124
>gi|197334196|ref|YP_002157328.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
gi|197315686|gb|ACH65133.1| ribosomal RNA small subunit methyltransferase B [Vibrio fischeri
MJ11]
Length = 451
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + +YQ+ G S + + +S D + I +GV+
Sbjct: 29 RAAAAKVIYQVVDQGHSLSSALP-------------KAQSEIKPRDQALLQEICYGVLRF 75
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + ++ G+ +L +P ++E V +
Sbjct: 76 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 132
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + VS
Sbjct: 133 PKLRGLINAVLRNYQRSQEELDAKSVS 159
>gi|217971245|ref|YP_002355996.1| sun protein [Shewanella baltica OS223]
gi|217496380|gb|ACK44573.1| sun protein [Shewanella baltica OS223]
Length = 428
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|167762592|ref|ZP_02434719.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
43183]
gi|167699698|gb|EDS16277.1| hypothetical protein BACSTE_00948 [Bacteroides stercoris ATCC
43183]
Length = 308
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ + D E+ R + + + LIS T W R+ + I++ +
Sbjct: 196 NQPLLPEFKDDEDQEFARRLFRRAILNCDYYRHLISEN-TRNWDLDRVAFMDVVIMQCAL 254
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
E++ ++PV V ++EYV IA + F+N LD + ++ + +
Sbjct: 255 AEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTLDGIVKELKKE 302
>gi|114561210|ref|YP_748723.1| sun protein [Shewanella frigidimarina NCIMB 400]
gi|114332503|gb|ABI69885.1| sun protein [Shewanella frigidimarina NCIMB 400]
Length = 427
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 15/143 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+Y++ G S + + + + + D + +GVM +
Sbjct: 4 RALAAKAIYEVLEKGISLSVALPDQQQHL------------QNGKDKALLAELCYGVMRQ 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S CL + F IL +L G +L +P ISE +
Sbjct: 52 LPQLDKCVSDCLAK--PFKGKQRILHQLLIVGCYQLYFTR-IPAHAAISETAEACRQLRF 108
Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
K +N VL + R++ +
Sbjct: 109 DGLVKVVNGVLRNIQRQDSELNT 131
>gi|257452795|ref|ZP_05618094.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 11/124 (8%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A EL V+ + + + +GV+ K ++D +IS + E L
Sbjct: 18 KYSNIALNELFHRKVFKKGEKNFITEVFYGVIRNKIYLDYMISQKVKEVKK-----DWLQ 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-----KEEIK 160
+ R ++ S V I E V +A + +F+N VL R +E +K
Sbjct: 73 QLFRLSFYQIRFMKSDDKGV-IWEGVELAKKKYGVSVSRFVNGVLRNFQRSFIEEEENLK 131
Query: 161 RSGC 164
R G
Sbjct: 132 REGR 135
>gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
Length = 435
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S V + E +A + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMDSDNKGV-VWEATELAKKKYGVPISKFINGTLRNYLRNKDSE 126
>gi|120596855|ref|YP_961429.1| sun protein [Shewanella sp. W3-18-1]
gi|120556948|gb|ABM22875.1| sun protein [Shewanella sp. W3-18-1]
Length = 429
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D I +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAEICYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS C + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISEC--LEKPLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|282879732|ref|ZP_06288462.1| transcription antitermination factor NusB [Prevotella timonensis
CRIS 5C-B1]
gi|281306401|gb|EFA98431.1| transcription antitermination factor NusB [Prevotella timonensis
CRIS 5C-B1]
Length = 334
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D E+ R + + +S + W FSRL + I++ + E++ ++
Sbjct: 204 DEEDREFARKLFRATILNADTYQRYMSET-SHNWDFSRLAYMDVVIMQIAIAEMLTFPNI 262
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P+ V I+EYV +A + +IN +LD ++R
Sbjct: 263 PISVTINEYVNLAKLYSTPKSGGYINGMLDAIAR 296
>gi|225868018|ref|YP_002743966.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. zooepidemicus]
gi|225701294|emb|CAW98294.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. zooepidemicus]
Length = 442
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 33 IGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
G + + ++ Y A D I++G + RK ++ ++
Sbjct: 12 RGQALLIVEDIFDHGAYSNLALKHQLANQSLSDKDKALVTEIVYGTISRKITLEWYLAHY 71
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAV 149
+ ++ + +L + +L VP I+++ V +A +G K +NAV
Sbjct: 72 IEDRDRLDKWVYY---LLMLSLYQLAYLDKVPAHAIVNDAVNLAKARTHGRGADKLVNAV 128
Query: 150 LDKVSRK 156
L +++ K
Sbjct: 129 LRQLTNK 135
>gi|116333602|ref|YP_795129.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
gi|116098949|gb|ABJ64098.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus brevis ATCC 367]
Length = 447
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + VD + +++G + + ++ +S + + +
Sbjct: 22 AYSNLQLEQTLESHRLSDVDRRFVTNLVYGTIQHQLTLEYYLSKFIKPQQKVLPWVKMT- 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
L + + + VP I +E + +A D + +F+ VL + R+
Sbjct: 81 --LMVALYQELYLDRVPKRAIFNEAIQLAKDRGHEGIRRFVTGVLHAIDRQ 129
>gi|329961415|ref|ZP_08299538.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
12057]
gi|328531892|gb|EGF58715.1| transcription antitermination factor NusB [Bacteroides fluxus YIT
12057]
Length = 308
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + A+ EL E D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTVKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
Length = 440
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L +I G + + + ++ VD I++G +
Sbjct: 11 AREVALSTLGEIFQDG-----------AFSNISLKKSLGKATLSDVDKSLVTEIVYGTVS 59
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ +S + ++ ++D + +L + + + +P+ ++ E V +A
Sbjct: 60 RKLTLEWYLSHFVADR---DQVDPWIYHLLLMSLYQFVYLEKIPLHAVVHEAVELAKQRK 116
Query: 139 YGDEPKFINAVLDKVSRKE 157
K++NA+L K+ R+E
Sbjct: 117 -KGSEKYVNALLRKMLREE 134
>gi|152998580|ref|YP_001364261.1| sun protein [Shewanella baltica OS185]
gi|151363198|gb|ABS06198.1| sun protein [Shewanella baltica OS185]
Length = 428
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + + + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPDQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISECLAK--PLKGKQRIIHQLLIIGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|262402050|ref|ZP_06078614.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
gi|262351696|gb|EEZ00828.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC586]
Length = 426
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGQSLSNALP-------------TAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ ++ +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQISFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R++E
Sbjct: 108 PRLRGLINAVLRNYQREQE 126
>gi|150006310|ref|YP_001301054.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
8482]
gi|212691834|ref|ZP_03299962.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
gi|237708040|ref|ZP_04538521.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237724809|ref|ZP_04555290.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|254885163|ref|ZP_05257873.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|265756189|ref|ZP_06090518.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294776295|ref|ZP_06741779.1| transcription antitermination factor NusB [Bacteroides vulgatus
PC510]
gi|319641350|ref|ZP_07996045.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
gi|149934734|gb|ABR41432.1| putative N utilization substance protein [Bacteroides vulgatus ATCC
8482]
gi|212665590|gb|EEB26162.1| hypothetical protein BACDOR_01329 [Bacteroides dorei DSM 17855]
gi|229437004|gb|EEO47081.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229457868|gb|EEO63589.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|254837956|gb|EET18265.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|263233780|gb|EEZ19389.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|294449882|gb|EFG18398.1| transcription antitermination factor NusB [Bacteroides vulgatus
PC510]
gi|317387031|gb|EFV67915.1| N utilization substance protein [Bacteroides sp. 3_1_40A]
Length = 308
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A EL E D ++ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFDE-KNGAKQELLPEFK-DEEDQDFARRLFRRTILNADYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRVAFMDVVIMQIALAEILSFPNIPVSVSLNEYVEIAKLYSTPKSGGFINGTL 292
Query: 151 DKVSRKEEIKR 161
D + + +
Sbjct: 293 DGIVNSLKKEN 303
>gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21193]
Length = 435
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ E+ +D F I++G + RK +D + + K +
Sbjct: 21 AYSNLRINEVLSENELNAMDKALFTEIVYGTVKRKYTLDFYLKPFVKTKIK-----AWVR 75
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE--EIKRSG 163
+L + + + VP II+E V IA + +N L + R + +
Sbjct: 76 QLLWMSIYQYVYLDKVPNHAIINEAVEIAKERGGYHNGNVVNGFLRTMMRSDLPDFNEIA 135
Query: 164 CVSA 167
Sbjct: 136 DPKK 139
>gi|167753516|ref|ZP_02425643.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
gi|167658141|gb|EDS02271.1| hypothetical protein ALIPUT_01791 [Alistipes putredinis DSM 17216]
Length = 312
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I R + D E+ + + + I T W R
Sbjct: 182 VIRTISNMRQSHADVKMLPEFKSDEDAEFVKTLFEKTLINYNERLEYIEKF-TRNWDVER 240
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS----R 155
+ + I+ + EL+ S+PV+V + EY+ IA + FIN VLDK+
Sbjct: 241 IVFMDNLIMATAITELVSFPSIPVKVTLDEYIDIAKFYSTPGSSTFINGVLDKIVEALTE 300
Query: 156 KEEIKRSGC 164
+ ++K++G
Sbjct: 301 EGKLKKTGR 309
>gi|307566362|ref|ZP_07628801.1| transcription antitermination factor NusB [Prevotella amnii CRIS
21A-A]
gi|307344939|gb|EFN90337.1| transcription antitermination factor NusB [Prevotella amnii CRIS
21A-A]
Length = 313
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
AD EL E D ++ + + + + S + W FSRL + I++
Sbjct: 168 GADQELLPEFK-DDEDRKFAIDLFRATIINAEVYQGYM-SQASRNWDFSRLAYMDVVIMQ 225
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSAI 168
+ E++ ++P+ V I+EYV +A + +IN +LD ++R E+ +
Sbjct: 226 IAIAEMVNFPNIPINVSINEYVNLAKLYSTPRSGGYINGMLDSIARHLIEVGKLLKPMPE 285
Query: 169 TQ 170
+Q
Sbjct: 286 SQ 287
>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
Length = 435
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +++++ Y E+ + VD F +++G + RK +D L+ + K
Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYSLDYLLKPFIKTK 69
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ +L + + + +P II E V IA +N VL V
Sbjct: 70 IK-----SWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGVLRTVM 124
Query: 155 R 155
R
Sbjct: 125 R 125
>gi|160893330|ref|ZP_02074117.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
gi|156865022|gb|EDO58453.1| hypothetical protein CLOL250_00879 [Clostridium sp. L2-50]
Length = 449
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 12/139 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R + L I+ E + L + + + GV +
Sbjct: 5 SREIVLDILLDIEKNDRFAGEALG----------EALRANQFMNKKERAYIGRLTEGVTE 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+K +D +++ K + ++ ILR E+ SVP E +EYV +
Sbjct: 55 QKIRLDYILNQFSKVKV--KKCKPVIRCILRMAAYEIFYMDSVPDEAACNEYVNLTAKRG 112
Query: 139 YGDEPKFINAVLDKVSRKE 157
+ ++N VL V R +
Sbjct: 113 FRTLKGYMNGVLRNVCRNK 131
>gi|317502725|ref|ZP_07960836.1| NusB family protein [Prevotella salivae DSM 15606]
gi|315666169|gb|EFV05725.1| NusB family protein [Prevotella salivae DSM 15606]
Length = 317
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E ++ EL E D E+ R + + +S
Sbjct: 175 EIVDTFVLKTIKRFEQ-ANGSEQELLPEYK-DDEDKEFARKLFRATIINADQYQHYMSEA 232
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W F RL + I++ + E++ ++PV V I+EYV +A + +IN +L
Sbjct: 233 -SRNWDFGRLAYMDIVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTSKSAGYINGML 291
Query: 151 DKVSR 155
D ++R
Sbjct: 292 DSIAR 296
>gi|291544835|emb|CBL17944.1| transcription antitermination factor NusB [Ruminococcus sp. 18P13]
Length = 138
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R R A + +++ + E+ + + + R +
Sbjct: 3 SMTRREVRDCAFKLIFEKLLRDDPIEELYAIADEVDEITVNDQ-------------VREL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G +D+ + +D +IS +++ SR+ I ++LR + E++ P+ I+E V
Sbjct: 50 VEGTLDKTEELDRIISEYSSKRG-LSRIAKINIAVLRIALYEILYDEKTPMNAAINEAVQ 108
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++ + ++ F+N VL +R +
Sbjct: 109 LSQTYAQQEDVSFVNGVLGAYARAHSSEE 137
>gi|258508664|ref|YP_003171415.1| tRNA and rRNA cytosine-C5-methytransferase [Lactobacillus rhamnosus
GG]
gi|257148591|emb|CAR87564.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus GG]
gi|259649970|dbj|BAI42132.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 446
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AVQ L ++ G Y + + D
Sbjct: 1 MTPNNP----RLLAVQTLTRVMGKGG-----------YSNLTLDHVITKYQLDSRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ + +D L++ + + +LD + +L+ V +L VP + +
Sbjct: 46 TNVVYGVIQHQLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
IA + KF+ VL + +RSG +T
Sbjct: 102 STEIAKKLGHQGVAKFVTGVLR------QAQRSGYPDPMT 135
>gi|199597150|ref|ZP_03210582.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
gi|199591954|gb|EDZ00029.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus rhamnosus HN001]
Length = 446
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AVQ L ++ G Y + + D
Sbjct: 1 MTPNNP----RLLAVQTLTRVMGKGG-----------YSNLTLDHVITKYQLDSRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+++GV+ + +D L++ + + +LD + +L+ V +L VP + +
Sbjct: 46 TNVVYGVIQHQLTLDYLLAPFVKNR----QLDTWVRCLLQTAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
IA + KF+ VL + +RSG +T
Sbjct: 102 STEIAKKLGHQGVAKFVTGVLR------QAQRSGYPDPMT 135
>gi|167860643|gb|ACA05102.1| putative N utilization substance protein [Flammeovirga yaeyamensis]
Length = 200
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
++ + + TE+ S D E+F + +++++ +I+ ++KW+ R
Sbjct: 67 VLKTVKNISTDSGTEILSISKNWDEDKEFFEDLYKYTLEQEESFKEIIAKK-SKKWAIDR 125
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ + ++ + E++ ++PV+V I+E++ I+ + +FIN +LD +S + E
Sbjct: 126 IAKVDSILINMALAEMLNFRNIPVKVTINEFIEISKQYSTPKSWQFINGMLDSISEELEA 185
Query: 160 K 160
+
Sbjct: 186 E 186
>gi|149279327|ref|ZP_01885458.1| putative N utilization substance protein [Pedobacter sp. BAL39]
gi|149229853|gb|EDM35241.1| putative N utilization substance protein [Pedobacter sp. BAL39]
Length = 297
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+L S D ++ + + + + LI+ T+ W R+ ++ +++ +
Sbjct: 178 NKLTPISQDWEEDRKFVEDLFAYTLRKDKEYQELIADR-TKNWESERIALMDTILMKMAI 236
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
EL+ S+PV+V I+EY+ ++ D+ FIN +LDK+ ++KR+ + I +
Sbjct: 237 CELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGILDKIL--GDLKRTDSIHKIGR 292
>gi|127514666|ref|YP_001095863.1| sun protein [Shewanella loihica PV-4]
gi|126639961|gb|ABO25604.1| sun protein [Shewanella loihica PV-4]
Length = 427
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S + + E + D + +GVM
Sbjct: 5 RALAARVVFQVLEKGVSLSVALPEQQQRL------------TSGKDKALLAELCYGVMRH 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+S C+++ I+ +L G +L +P ISE +
Sbjct: 53 LPQLDKLVSDCMSK--PLKGKQRIVHQLLLVGCYQLYFTR-IPGHAAISETAEACRQLKF 109
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N VL + R ++
Sbjct: 110 EGLVKVVNGVLRNLQRNQK 128
>gi|160892144|ref|ZP_02073147.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
gi|270296236|ref|ZP_06202436.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480857|ref|ZP_07939938.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
gi|156858622|gb|EDO52053.1| hypothetical protein BACUNI_04607 [Bacteroides uniformis ATCC 8492]
gi|270273640|gb|EFA19502.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316902942|gb|EFV24815.1| transcription antitermination factor NusB [Bacteroides sp. 4_1_36]
Length = 308
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + A+ EL E D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE-KNGANQELLPEFK-DEEDQEFARRLFRRAILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVVIMQCALAEILSFPNIPVSVSLNEYVDIAKVYSTAKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|59713152|ref|YP_205928.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
gi|59481253|gb|AAW87040.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Vibrio fischeri
ES114]
Length = 426
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + +YQ+ G S + + +S D + I +GV+
Sbjct: 4 RAAAAKVIYQVVDQGHSLSSALP-------------KAQSEIKPRDQALLQEICYGVLRF 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + ++ G+ +L +P ++E V +
Sbjct: 51 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKNLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + VS
Sbjct: 108 PKLRGLINAVLRNYQRSQEELDAKSVS 134
>gi|254775818|ref|ZP_05217334.1| Fmu [Mycobacterium avium subsp. avium ATCC 25291]
Length = 390
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + L +SE + Y A L E D + + +G
Sbjct: 19 ARGAAFEVL-----------RAVSERDAYANLALPALLRERGITGRDAAFATELTYGTCR 67
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + +D +L +LR G +L+ V +S V A F
Sbjct: 68 TRGLLDAVIGA--AAGRPPEAIDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEF 124
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+N VL +++ ++E ++
Sbjct: 125 GSARAGFVNGVLRRIAGRDERSWVQELAP 153
>gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_36A2]
gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_36A2]
Length = 435
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S + I+ E +A + KFIN L R ++++
Sbjct: 73 NLLRISIYQITFMDS-DNKGIVWEATELAKKKYGVPISKFINGTLRNYLRNKDLE 126
>gi|300361963|ref|ZP_07058140.1| transcription antitermination factor NusB [Lactobacillus gasseri
JV-V03]
gi|300354582|gb|EFJ70453.1| transcription antitermination factor NusB [Lactobacillus gasseri
JV-V03]
Length = 133
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A+QA+Y + + E + ++++ L ++ I++GV
Sbjct: 4 HEMRRIAMQAIYLANQGNLTDAE-----------EVCQKALKALELKSFPDYSAEIVNGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K+ +D +S L + W +R++ I +IL + E+ ++ ++E + + +
Sbjct: 53 LANKKELDEQLSKYLKKGWRLNRINEIDLAILEVALYEMQNSKAIEPVAALNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
F + KFIN +L +K+
Sbjct: 113 FSSKESKKFINGLLANFIKKD 133
>gi|308272930|emb|CBX29534.1| N utilization substance protein B homolog [uncultured
Desulfobacterium sp.]
Length = 90
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
I + W SR+ + +I+R V EL+ C +P +V I+E + I + + FI
Sbjct: 10 IIERFSSNWKISRMSCVDRNIMRIAVFELVWCDDIPCKVSINEAIDIGKKYGTDESGPFI 69
Query: 147 NAVLDKVSRKEEIK 160
N +LD V E +
Sbjct: 70 NGILDSVRDAVEKE 83
>gi|319424439|gb|ADV52513.1| sun protein [Shewanella putrefaciens 200]
Length = 429
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + E + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS C + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISEC--LEKPLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|119510389|ref|ZP_01629523.1| transcription antitermination protein NusB [Nodularia spumigena
CCY9414]
gi|119464918|gb|EAW45821.1| transcription antitermination protein NusB [Nodularia spumigena
CCY9414]
Length = 209
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 47 YRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ A E + D E + ++ V + + ID ISS L + W +RL I
Sbjct: 95 NQLGAAVEFPELIQLANQDKEVGRYAIQLVKLVNEHRVSIDEEISSALVD-WQVTRLAQI 153
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
ILR V E+ ++P V I+E V +A + + +FIN VL +V+ ++
Sbjct: 154 DRDILRIAVGEMRFF-NLPDRVAINEAVELAKRYSGDEGHRFINGVLRRVTEQK 206
>gi|331007627|ref|ZP_08330769.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC1989]
gi|330418567|gb|EGG93091.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC1989]
Length = 442
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR+ AV+ L ++ S +E + + + + + + +
Sbjct: 3 KKTSARIIAVKILLRLRQQKGSLA--------------SEFTLANELDEQEKRFAQELCY 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ ++ +S + D + +L G+ +L P I+E V A
Sbjct: 49 GLCRWYFLLEFQLSDL--LEKPLKNKDQDIYLLLLLGLYQLQFMRVAP-HAAINETVDAA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
F K IN VL R+
Sbjct: 106 VFFRKPWAKKLINGVLRSFQRE 127
>gi|325680657|ref|ZP_08160195.1| transcription antitermination factor NusB [Ruminococcus albus 8]
gi|324107437|gb|EGC01715.1| transcription antitermination factor NusB [Ruminococcus albus 8]
Length = 137
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 62/149 (41%), Gaps = 13/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R AA ++ + + E E + L+ D + +
Sbjct: 1 MASRHDIRQAAFLLSFEKLFLDEELESLFEGAEEL---------GEFLLLNDD---VKDL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ V D+++ +D +IS ++K + +R+ + ++LR + E + VPV V ISE V
Sbjct: 49 VRCVFDKQEELDSIISKY-SDKRALNRIPKVDLAVLRIAIYEALYDDKVPVNVAISEAVS 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + + F+N +L S++ +
Sbjct: 108 LTEKYALEPDVSFVNGLLGAFSKELKKDE 136
>gi|146291133|ref|YP_001181557.1| sun protein [Shewanella putrefaciens CN-32]
gi|145562823|gb|ABP73758.1| sun protein [Shewanella putrefaciens CN-32]
Length = 429
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + E + + D + +GVM
Sbjct: 4 RALAAKAIFEVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ IS C + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRISEC--LEKPLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|306830710|ref|ZP_07463875.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304427218|gb|EFM30325.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 440
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + + D I++G
Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKSLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIKDRDKLDSWVYYLLM---LSLYQLLYLDKIPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134
>gi|225871064|ref|YP_002747011.1| ribosomal RNA small subunit methyltransferase [Streptococcus equi
subsp. equi 4047]
gi|225700468|emb|CAW94888.1| putative ribosomal RNA small subunit methyltransferase
[Streptococcus equi subsp. equi 4047]
Length = 442
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 33 IGCSTTEIISEYE--TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
G + + ++ Y A D I++G + RK ++ ++
Sbjct: 12 RGQALLIVEDIFDHGAYSNLALKHQLANQFLSDKDKALVTEIVYGTISRKITLEWYLAHY 71
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAV 149
+ ++ + +L + +L VP I+++ V +A +G K +NAV
Sbjct: 72 IEDRDRLDKWVYY---LLMLSLYQLAYLDKVPAHAIVNDAVNLAKARAHGRGADKLVNAV 128
Query: 150 LDKVSRK 156
L +++ K
Sbjct: 129 LRQLTNK 135
>gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
Length = 447
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++ L + + + +Y E VD +++GV+
Sbjct: 10 RNLALETL-----------DKVFQRGSYSNLQLNETLKRHQLKEVDKRLVTTLVYGVLQH 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ++ ++ + D + ++L + +P E + IA
Sbjct: 59 KLTLEYWLTPLVKRDP-----DSWVKTLLMLSFYQYQFMDRIPEWAATDEAIKIAKWRGN 113
Query: 140 GDEPKFINAVLDKVSRK 156
KF+ VL R+
Sbjct: 114 PGIRKFVTGVLHSFLRQ 130
>gi|189467494|ref|ZP_03016279.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
17393]
gi|189435758|gb|EDV04743.1| hypothetical protein BACINT_03883 [Bacteroides intestinalis DSM
17393]
Length = 308
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE--KNGANQTLLPEFKDEEDQEFARRLFRRAILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|67921757|ref|ZP_00515274.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
gi|67856349|gb|EAM51591.1| Antitermination protein NusB [Crocosphaera watsonii WH 8501]
Length = 209
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 27 LYQIDIIGCSTTEIISEYET-----------YRFCADTELDVESVYLHVDLEWFRVIIHG 75
L+Q + + + E + V+ H ++ +I
Sbjct: 67 LFQSETRATTVESAKTMIEDALTLTQTAINRLASAVEFPEIVQLATQHEVRQYAIELIAT 126
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V R+ ID + + + W RL I ILR V E++ +P +V I+E V +A
Sbjct: 127 VARRRNDIDQQL-EVVLKDWQLKRLAKIDQDILRLAVAEILFLD-IPEKVAINEAVELAK 184
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
+ D +FIN VL + + + + K
Sbjct: 185 RYSDDDGYRFINGVLRRFTDQMKQK 209
>gi|309809906|ref|ZP_07703754.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
gi|308169694|gb|EFO71739.1| NusB family protein [Lactobacillus iners SPIN 2503V10-D]
Length = 284
Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNLALNNALEKSKLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|289705544|ref|ZP_06501936.1| putative ribosomal RNA small subunit methyltransferase B
[Micrococcus luteus SK58]
gi|289557773|gb|EFD51072.1| putative ribosomal RNA small subunit methyltransferase B
[Micrococcus luteus SK58]
Length = 543
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 4 QDNKKDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADT 53
QD + + RG + R + QA Q + + + Y
Sbjct: 29 QDRRDAQGRTRNRGRSGAGRKYSAQAPSQRSRTSDPARRVAFGVVRAVHAEDAYANLVLP 88
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
++ D + + +G + D +++ C+ ++D + LR G
Sbjct: 89 ARIRQARLDRRDAGFATELAYGTLRGLGLYDAILTRCVDR--PLEKIDPPVLDALRLGAH 146
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+L+ VP + V + F+NAVL +V+ + + V+
Sbjct: 147 QLLGMR-VPAHAALDATVSLVRAEIGAGASGFVNAVLRRVAERPLEEWLADVAP 199
>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
Length = 435
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +++++ Y E+ + VD F +++G + RK +D L+ + K
Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKTK 69
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ +L + + + +P II E V IA +N +L V
Sbjct: 70 IK-----SWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM 124
Query: 155 R 155
R
Sbjct: 125 R 125
>gi|158336915|ref|YP_001518090.1| transcription antitermination protein NusB [Acaryochloris marina
MBIC11017]
gi|189035877|sp|B0C5Q2|NUSB_ACAM1 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|158307156|gb|ABW28773.1| transcription antitermination protein NusB [Acaryochloris marina
MBIC11017]
Length = 205
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
++ +I V + ID I W RL I ++LR V E+ +P +V
Sbjct: 113 RDYTLDLIGAVHHHRDEIDQ-ILETSLVDWQLHRLAHIDANLLRLAVAEMKYLD-IPNQV 170
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
I+E V +A + + +FIN VL +V+R+
Sbjct: 171 AINESVELAKKYSAEEGHRFINGVLRRVTRQI 202
>gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 434
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + E + + I +GV+ K+ +D +I + +
Sbjct: 18 AYSNIVLNDAFREFFLSPKEKAFMTEIFYGVIRNKKFLDYIIERYTKDIRK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ +S V + E +A + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMNSDDKGV-VWEATELAKKYSTA-ISKFINGTLRNYLRNKDSE 125
>gi|89890544|ref|ZP_01202054.1| putative antitermination protein NusB [Flavobacteria bacterium
BBFL7]
gi|89517459|gb|EAS20116.1| putative antitermination protein NusB [Flavobacteria bacterium
BBFL7]
Length = 312
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
+ + E + D+++ + + ++ I T W
Sbjct: 179 VNSAMIMFLRKVKPGKEIKLPELIKDEDDVKFTMDLFRKTLFNREEFLERI-EGKTPNWE 237
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
R+ I ++ E ++ +S+PV+V ++EY+ I+ D+ FIN +LD +S++
Sbjct: 238 QDRIAQIDLVLIMMAQCEFLKFNSIPVKVSLNEYLEISKDYSTPKSSFFINGILDNLSKE 297
Query: 157 EEIK 160
E +
Sbjct: 298 YEKE 301
>gi|320195380|gb|EFW70007.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
WV_060327]
Length = 429
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|255692806|ref|ZP_05416481.1| NusB family protein [Bacteroides finegoldii DSM 17565]
gi|260621435|gb|EEX44306.1| NusB family protein [Bacteroides finegoldii DSM 17565]
Length = 308
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|56807939|ref|ZP_00365759.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Streptococcus
pyogenes M49 591]
Length = 320
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E I + Y A + D I++G + RK ++ ++ + ++
Sbjct: 18 EAIFDQGAYTNIALNQQLSNKALSAKDRALLTEIVYGTVSRKISLEWYLAHYVKDRDKLD 77
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKV 153
+ +L + +L +P I+++ V IA + KF+NA+L +
Sbjct: 78 KWVYY---LLMLSLYQLTYLDKLPAHAIVNDAVGIAKNRGNKKGAEKFVNAILRQF 130
>gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU144]
Length = 393
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +++++ Y E+ + VD F +++G + RK +D L+ +
Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKT- 68
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ + +L + + + +P II E V IA +N +L V
Sbjct: 69 ----KIKSWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVM 124
Query: 155 R 155
R
Sbjct: 125 R 125
>gi|253582362|ref|ZP_04859585.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
gi|251835901|gb|EES64439.1| rRNA methyltransferase [Fusobacterium varium ATCC 27725]
Length = 432
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E E++ + + + +GV+ +K +D I+ ++ +
Sbjct: 18 KYSNIALNEYFKENILNRKERGFITELFYGVIRKKIFLDYEINKRVSSIKK-----DWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++LR + ++ S V + E +A F KF+N VL R+ +
Sbjct: 73 NLLRISIYQITFMKSDNKGV-VWEASELAKKKFGVPVGKFVNGVLRGYLREMD 124
>gi|332710036|ref|ZP_08429991.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
majuscula 3L]
gi|332351179|gb|EGJ30764.1| ribosomal RNA small subunit methyltransferase RsmB [Lyngbya
majuscula 3L]
Length = 477
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ QD + R A AL I G ++
Sbjct: 1 MS-QDKSSTFDKQNP----RQLAFLALRDIHRRGAFADIALNRVLHNA-----------Q 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D +++G + R++ +D L+ + ++ L +IL G+ +L
Sbjct: 45 LTGADRGLVTELVYGSVRRQRTLDALLDQLGKK--KANQQPPDLRTILHLGLYQLRYQGR 102
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+P ++ V +A + + +N +L +R
Sbjct: 103 IPASAAVNTTVDLAKNNGFKGLAGVVNGLLRNYAR 137
>gi|313203078|ref|YP_004041735.1| nusb antitermination factor [Paludibacter propionicigenes WB4]
gi|312442394|gb|ADQ78750.1| NusB antitermination factor [Paludibacter propionicigenes WB4]
Length = 316
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + + D E+ R ++ V+ + + +I T+ W R+ + I+
Sbjct: 195 DEQPLLPMFKDEEDAEFARKLMRSVLTKGPKLREMI-DVNTKNWELDRIAFMDIVIMEVA 253
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ EL++ ++PV V ++EY+ IA + FIN VLD + + + +
Sbjct: 254 LAELMDFPTIPVNVTLNEYIEIAKTYSTEKSGTFINGVLDNIVGQLKSEN 303
>gi|323435897|ref|ZP_01048839.2| NusB family protein [Dokdonia donghaensis MED134]
gi|321496212|gb|EAQ40073.2| NusB family protein [Dokdonia donghaensis MED134]
Length = 314
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ + ++ + + + I+ T W R+ + +++ + E ++ +
Sbjct: 205 KNEEDVHFGTELLEKTVANETFLANEITEN-TPNWDKERIADVDMVLIKMALCEFLKFPT 263
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+PV+V I+EY+ I+ ++ FIN +LDK+ ++ E ++
Sbjct: 264 IPVKVTINEYLEISKEYSTPKSSIFINGILDKLVKQYEREK 304
>gi|330836447|ref|YP_004411088.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
gi|329748350|gb|AEC01706.1| NusB antitermination factor [Spirochaeta coccoides DSM 17374]
Length = 138
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ + + + + R ++ G ++ ID +I++ + + +F R+D+I +ILR V
Sbjct: 10 QEEQDEFEPEVVLFARYLVAGTLENIDGIDDVIAAY-SVRRAFDRIDVIDRNILRISVFS 68
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
L VII E V ++ +F +FIN +LD + ++ R+ T
Sbjct: 69 LFFSEDTHPHVIIDEAVKLSQEFSSEVNYRFINGLLDALMQELSAYRTTYPDVST 123
>gi|311742368|ref|ZP_07716177.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
gi|311313996|gb|EFQ83904.1| RNA methyltransferase Sun [Aeromicrobium marinum DSM 15272]
Length = 428
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 14/134 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A AL +D ++ E D + ++HG + R
Sbjct: 6 RAIAFHALRAVDERDAYVNLVLPAMLD-----------EHHLEGRDAAFATELVHGTVRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ D +I + +D + LR G +L+ VP +S V +
Sbjct: 55 QGTYDAIIRQ--VSGRDLASIDPPVLDALRLGAHQLLSMR-VPAHAAVSTTVDVVRREIG 111
Query: 140 GDEPKFINAVLDKV 153
F+NA+L ++
Sbjct: 112 HKPVGFVNALLRRI 125
>gi|291515762|emb|CBK64972.1| Transcription termination factor [Alistipes shahii WAL 8301]
Length = 311
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
++ R D E+ + + + I W R
Sbjct: 181 VLRTLSNLRVSHTELKVPAKFKSSEDPEFVKTLFEKSLVNYSAFQDYIEKFTAN-WDVER 239
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR---- 155
+ + I+ + EL SVPV+V + E++ I+ + FIN VLDK+
Sbjct: 240 IVFMDNLIIGTAMAELTSFPSVPVKVTLDEWIEISKYYSTPGSSTFINGVLDKIVESLTA 299
Query: 156 KEEIKRSGC 164
+ IK++G
Sbjct: 300 EGRIKKAGR 308
>gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
Length = 435
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +++++ Y E+ + VD F +++G + RK +D L+ +
Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYLLKPFIKT- 68
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ + +L + + + +P II E V IA +N +L V
Sbjct: 69 ----KIKSWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILRTVM 124
Query: 155 R 155
R
Sbjct: 125 R 125
>gi|315924509|ref|ZP_07920730.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622213|gb|EFV02173.1| RNA methyltransferase Sun [Pseudoramibacter alactolyticus ATCC
23263]
Length = 440
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ AR A ++L +ID G + + + D + +
Sbjct: 4 KKNSSNNAREQAYKSLLKIDREG-----------AFSNLEIRQTLSRLSFNAEDANLYTL 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++GV+ + +D + + E R+D ILR ++++ +P +SE V
Sbjct: 53 LVYGVLQNQIFLDYCLDQLIKEP---KRVDFETREILRIAAYQILKLDRIPDYAAVSEAV 109
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ F+N VL + R +
Sbjct: 110 LLCGK-VNRRAKGFVNGVLRNLIRNK 134
>gi|324009054|gb|EGB78273.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 57-2]
Length = 429
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|288928412|ref|ZP_06422259.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
gi|288331246|gb|EFC69830.1| NusB family protein [Prevotella sp. oral taxon 317 str. F0108]
Length = 347
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D ++ R + + + +S + W FSRL + I++ + E++
Sbjct: 176 EYKDEEDKDFARKLFRSTILNGEQYQRYMSEN-SRNWDFSRLAYMDVVIMQIAIAEMLNF 234
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++PV V I+EYV +A + +IN +LD ++R
Sbjct: 235 PNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTIAR 271
>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
Length = 435
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ +++++ Y E+ + VD F +++G + RK +D L+ + K
Sbjct: 11 ETINDVLNK-GAYSNLKINEVLSTNNINTVDKNLFTELVYGTIKRKYTLDYLLKPFIKTK 69
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ +L + + + +P II E V IA +N +L V
Sbjct: 70 IK-----SWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGFHTGNIVNGILRTVM 124
Query: 155 R 155
R
Sbjct: 125 R 125
>gi|298209147|ref|YP_003717326.1| putative N utilization substance protein [Croceibacter atlanticus
HTCC2559]
gi|83849074|gb|EAP86943.1| putative N utilization substance protein [Croceibacter atlanticus
HTCC2559]
Length = 302
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D ++ ++ + IS T W R+ + +++ + E ++ S+PV
Sbjct: 196 EDRDFAVELMQKTILNDVEYTSEISKK-TPNWDKERIAELDAVLMKMAICEFVKFPSIPV 254
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+V I+EY+ IA ++ FIN +LDK+S++ +
Sbjct: 255 KVTINEYLEIAKEYSTPKSSIFINGILDKISKEFKA 290
>gi|260857409|ref|YP_003231300.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. 11368]
gi|260870031|ref|YP_003236433.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|257756058|dbj|BAI27560.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O26:H11 str. 11368]
gi|257766387|dbj|BAI37882.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O111:H- str. 11128]
gi|323154126|gb|EFZ40329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
EPECa14]
gi|323179175|gb|EFZ64749.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1180]
Length = 429
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 17/152 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ QI G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQIVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ GV +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGVYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
A IN VL + R++E +G
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEELLAG 135
>gi|317154835|ref|YP_004122883.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
gi|316945086|gb|ADU64137.1| NusB/RsmB/TIM44 [Desulfovibrio aespoeensis Aspo-2]
Length = 425
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 20/157 (12%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
Q K L AR A++AL G + +
Sbjct: 2 NQHTPKPLPP------ARRIALEALSHCLFSGHDIQATLDTALS-----------AKPTD 44
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D I +G + K ++ ++S L + + + E+I VP
Sbjct: 45 PRDTGLATEIAYGYLRHKGRVEYVLSRFLQDPGKL---PPKMRLAMGVAAYEMIFLDKVP 101
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V + NAVL +V+ E
Sbjct: 102 AYASVDWAVEFSKTKPGTRLSGLFNAVLRRVAELGET 138
>gi|144899806|emb|CAM76670.1| Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p:Antitermination protein
NusB [Magnetospirillum gryphiswaldense MSR-1]
Length = 437
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 39 EIISEYETYRFCADTELDVES---VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
+++ + D LD E D + R+++ + R ID +I+ C+
Sbjct: 20 DLLECVLAQKRLLDETLDSEPRLTKLAERDRAFTRMLVATTLRRLGQIDAVIARCIDR-- 77
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ ++LR G +L+ P IS V +A + K INAVL ++ R
Sbjct: 78 PLPAKAGRVRNMLRLGAAQLLFLD-TPPHAAISTTVDLAKNSPLAGFAKLINAVLRRLDR 136
Query: 156 KEEI 159
+
Sbjct: 137 EGRA 140
>gi|297180807|gb|ADI17013.1| tRNA and rRNA cytosine-c5-methylases [uncultured Vibrionales
bacterium HF0010_22E23]
Length = 426
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + ++Q+ G S T ++ + D + I +GV+
Sbjct: 4 RAMAAKVIFQVVDQGQSLTAVLP-------------KAQQQIADRDGALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + + ++ G+ +L VP ++E V
Sbjct: 51 LPRLEAITQSLM--EKPLTGKQRVFHHLILVGLYQLNYMR-VPAHAAVAETVNATKPLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
+NAVL R+++ +S
Sbjct: 108 PQLRGLVNAVLRNYQREQDALNEKAIS 134
>gi|38233907|ref|NP_939674.1| hypothetical protein DIP1321 [Corynebacterium diphtheriae NCTC
13129]
gi|38200168|emb|CAE49849.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 485
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 57/168 (33%), Gaps = 16/168 (9%)
Query: 5 DNKKDLKLSHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ D + RG + R A + +++I Y ++ +S
Sbjct: 34 SSQSDPRWKPLRGIDLPRSVAFWVIQRVEI-----------DAAYANLTLPKVLKQSKLS 82
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + + +G + + +D +I+ C + + L + + LR G +L+
Sbjct: 83 GRDAAFATELTYGTLRTQGVLDTVIAECSSRE--LEALKPEVRAALRLGAYQLLYTRVG- 139
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ V I F+N VL +SR ++ +
Sbjct: 140 AHAAVDTTVRIMEAIGQDRAKGFVNGVLRTISRTSPQSWIEKLTPSGE 187
>gi|262166812|ref|ZP_06034549.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
gi|262026528|gb|EEY45196.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
VM223]
Length = 426
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGQSLSNALP-------------TAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|159027396|emb|CAO86880.1| nusB [Microcystis aeruginosa PCC 7806]
Length = 217
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E+ +I V R+ I+ ++ L + W RL I IL+ V E++ +P +V
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVD-WQLHRLPRIDRDILQIAVAEMLYLD-IPQKV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
I+E + +A + + +FIN VL +V+ K
Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLNEAEKA 212
>gi|90413777|ref|ZP_01221765.1| Putative Sun protein [Photobacterium profundum 3TCK]
gi|90325246|gb|EAS41743.1| Putative Sun protein [Photobacterium profundum 3TCK]
Length = 431
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q ++Q+ G S + + + D + I +GV+
Sbjct: 4 RAAAAQVVFQVVDQGQSLSAALP-------------AAQQNIRERDHALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P ++E V D
Sbjct: 51 LPRLESI--TTHLMDKPLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INA+L R++E + VS
Sbjct: 108 TQLRGLINAILRNYQRQQEQLDAQSVS 134
>gi|331659579|ref|ZP_08360517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
gi|331052794|gb|EGI24827.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA206]
Length = 429
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KISDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN +L + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGILRQFQRQQDE 131
>gi|256392286|ref|YP_003113850.1| Fmu (Sun) domain-containing protein [Catenulispora acidiphila DSM
44928]
gi|256358512|gb|ACU72009.1| Fmu (Sun) domain protein [Catenulispora acidiphila DSM 44928]
Length = 493
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA++ L E + + Y L + D + + +G +
Sbjct: 12 QARAAALEVL-----------EAVRTRDAYANLLLPRLLRDRGLSGRDAAFTTELSYGTL 60
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
D +I++C+ +D ++ LR G +L+ VP +S V +
Sbjct: 61 RGLGTYDAIIAACVDR--DLDAVDPVVLDALRIGAHQLLAMD-VPPHAAVSTTVDLVRSV 117
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+F NA+L +V + + + ++ Q
Sbjct: 118 SNEGASRFANAILRRVGQGDLQEWIKRIAPNAQ 150
>gi|153802771|ref|ZP_01957357.1| sun protein [Vibrio cholerae MZO-3]
gi|124121684|gb|EAY40427.1| sun protein [Vibrio cholerae MZO-3]
Length = 434
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S ++ + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGHSLSDALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|315297154|gb|EFU56434.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 16-3]
Length = 429
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|110643527|ref|YP_671257.1| 16S rRNA methyltransferase B [Escherichia coli 536]
gi|123343554|sp|Q0TCH3|RSMB_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|110345119|gb|ABG71356.1| SUN protein [Escherichia coli 536]
Length = 429
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|294673022|ref|YP_003573638.1| transcription antitermination factor NusB [Prevotella ruminicola
23]
gi|294473573|gb|ADE82962.1| transcription antitermination factor NusB [Prevotella ruminicola
23]
Length = 282
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ ++ R + + +S + W FSRL + +++ + E++ +V
Sbjct: 158 SEEEKDFARKVFRAAIMNADEYQRYMSEA-SRNWDFSRLAYMDIILMQIAIAEMMTLPNV 216
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P+ V I+EYV IA + +IN +LD ++R SG ++ +
Sbjct: 217 PISVTINEYVEIAKFYSTPKSAGYINGMLDGIARNL--VESGRLAKFIE 263
>gi|183982229|ref|YP_001850520.1| Fmu protein [Mycobacterium marinum M]
gi|183175555|gb|ACC40665.1| Fmu protein [Mycobacterium marinum M]
Length = 481
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 30/180 (16%)
Query: 4 QDNKKDLKLSH------------RRGI----ARLAAVQALYQIDIIGCSTTEIISEYETY 47
Q N+ D K R AR AA AL + ++
Sbjct: 9 QRNRPDRKPRRSEGTGVPNQRRGPRRRPLDPARGAAFNALRAVSERNAYANLVLPALLRE 68
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
R D + + +G + +D +I + S +D +L +
Sbjct: 69 R-----------GITGRDAAFATELTYGACRARGLLDAIIGA--AAGRSPEAIDPVLLDL 115
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
LR G +L+ V +S V A F F+NAVL ++ ++E ++
Sbjct: 116 LRLGAYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDEQSWVQELAP 174
>gi|171778151|ref|ZP_02919408.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283133|gb|EDT48557.1| hypothetical protein STRINF_00244 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 440
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 56/143 (39%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + ++ D I++G
Sbjct: 6 KKQARGLALVVL-----------ENVFEEGAYSNIALNQELKQTQLSQKDKSLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIEDRDKLDPWVYYLLM---LSLYQLLYLDKMPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL ++++ +
Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134
>gi|288904707|ref|YP_003429928.1| RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
gi|288731432|emb|CBI12984.1| putative RNA-binding Sun protein [Streptococcus gallolyticus UCN34]
Length = 440
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + + D I++G
Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLTPKDKSLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIKDRDKLDSWVYYLLM---LSLYQLLYLDKIPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL + +++E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTKEE 134
>gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
Length = 429
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|166365064|ref|YP_001657337.1| transcription antitermination protein NusB [Microcystis aeruginosa
NIES-843]
gi|254772647|sp|B0JGZ3|NUSB_MICAN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|166087437|dbj|BAG02145.1| N utilization substance protein B homolog [Microcystis aeruginosa
NIES-843]
Length = 217
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E+ +I V R+ I+ ++ L + W RL I IL+ V E++ +P +V
Sbjct: 117 REYALELIGTVYRRRAEIEQELTGALVD-WQLHRLPRIDRDILQIAVAEMLYLD-LPQKV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
I+E + +A + + +FIN VL +V+ K
Sbjct: 175 AINEAIELAKRYSDDEGYRFINGVLRRVTNKLNESEKA 212
>gi|191174468|ref|ZP_03035969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|300973968|ref|ZP_07172375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|306816369|ref|ZP_07450507.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|190905276|gb|EDV64914.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
F11]
gi|222034997|emb|CAP77740.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LF82]
gi|300308978|gb|EFJ63498.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 200-1]
gi|305850765|gb|EFM51222.1| 16S rRNA methyltransferase B [Escherichia coli NC101]
gi|312947839|gb|ADR28666.1| 16S rRNA methyltransferase B [Escherichia coli O83:H1 str. NRG
857C]
gi|324014965|gb|EGB84184.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 60-1]
Length = 429
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
Length = 470
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 14/145 (9%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K S + AR A++ L ++ + E + ++ S D + +
Sbjct: 15 KPSGLKASARYQAMETL-----------NLVYKGEAFVNQEVNQVLSYSRVEDSDRDLYT 63
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++G + + L+ L + L ++L + +VP I+ E
Sbjct: 64 RLVYGSLQFHWTLQELLKQVLKLYKRTKKW---LLALLELSAYQHYYLDAVPDHAIVDEA 120
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSR 155
V IA +F N L + R
Sbjct: 121 VRIAKKRGNQTMGRFTNGTLRNLFR 145
>gi|261213231|ref|ZP_05927513.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
gi|260837505|gb|EEX64208.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. RC341]
Length = 426
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGQSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|332879944|ref|ZP_08447629.1| putative transcription antitermination factor NusB [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332682155|gb|EGJ55067.1| putative transcription antitermination factor NusB [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 313
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLE-WFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
I+ ++ R + ++Y D + + + + + I LT W
Sbjct: 182 IVKLFKNLRPNPPEKYFTPTLYNTDDEKLFLSDLFKKTVLNDNKLKNFIDDKLTN-WDKE 240
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
R+ ++ +L+ V EL+ S+P++V I+EY+ ++ ++ FIN +L+ + ++ E
Sbjct: 241 RVAVLDNILLKMAVCELLYFPSIPIKVTINEYLELSKEYSTPKSSLFINGILNVIHKELE 300
Query: 159 IKR 161
K
Sbjct: 301 EKE 303
>gi|228476962|ref|ZP_04061600.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
salivarius SK126]
gi|228250981|gb|EEK10152.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
salivarius SK126]
Length = 440
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G Y A +S D I++G
Sbjct: 6 KKTARGQALEVLEEVFQEG-----------AYSNIALNAHLSKSQLTDKDKALVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ K ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 55 TVAHKITLEWILAHVIEDRDKLEPWVYDLLL---LSLYQLAYLDKIPAHAVVNDAVAIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 112 NRGNKKGAEKLVNAVLRKLS 131
>gi|329894840|ref|ZP_08270640.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
gi|328922734|gb|EGG30068.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC3088]
Length = 425
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 19/146 (13%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
IARL+AV+A+ Q+ A D + + + G
Sbjct: 4 SIARLSAVRAVSQVLTG----------------HAIRVSDFDQGLDPQQKAFAHQLAQGT 47
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ + L++ L++ + + +IL G+ ++ P ++E V +A
Sbjct: 48 INALPRLSGLLNQLLSK--PIKPKEAEVHAILLTGLYQIEYMR-TPDHAAVNESVNLAKK 104
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRS 162
K IN L + R+++ R+
Sbjct: 105 LKKTWAIKLINGCLRRFLREQDTLRA 130
>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
Length = 447
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 18/151 (11%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
++ KLS + AR A++ L ++ G + ++ + D
Sbjct: 3 REKKLSTTKS-ARAIALETLIRVLENGSYSNISLNNNLKHSN-----------LSVADQN 50
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
I++G + K +++ + + + L +L +++ VP ++
Sbjct: 51 LATKIVYGTIQYKIYLEYQLHDLIKS----KITEKYLKPLLLMSAYQILFLDKVPNRAVL 106
Query: 128 SEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
E +A F F +N +L ++R+
Sbjct: 107 DEANKLAKQFGKKHSSGFRLVNGILRSLTRR 137
>gi|226366354|ref|YP_002784137.1| rRNA methyltransferase [Rhodococcus opacus B4]
gi|226244844|dbj|BAH55192.1| putative rRNA methyltransferase [Rhodococcus opacus B4]
Length = 475
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 13/175 (7%)
Query: 3 IQDNKKDLKL-------SHRR-GIARL-AAVQ-ALYQIDIIGCSTTEIISEYETYRFCAD 52
+ ++++ + + R AR A Q L Q + + E + Y
Sbjct: 1 MSESRRPARRGQSGSGARNNRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVL 60
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
L E D + +G + +D +I+ C +D L +L+ G
Sbjct: 61 PGLLRERRLDGRDAALATELAYGAARARGLLDAVIADC--AGRPIDEIDGPLLDVLQLGA 118
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+L+ P ++ V + + F+NAVL +VS + E + ++
Sbjct: 119 YQLLRTRVAP-HAAVATSVDLVRAEAGPGKAGFVNAVLRRVSERSEAEWVERLAP 172
>gi|300726454|ref|ZP_07059900.1| NusB family protein [Prevotella bryantii B14]
gi|299776182|gb|EFI72746.1| NusB family protein [Prevotella bryantii B14]
Length = 320
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E AD EL E DL++ R + + + S
Sbjct: 150 EIVDTFVIKTIKRFEQ-ANKADQELLPEYK-DEEDLDFARKLFRSTILNADQYQRYM-SD 206
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W FSRL + I++ + EL ++P V I+EYV +A + ++N +L
Sbjct: 207 ASRNWDFSRLAYMDVVIMQIAIAELCTFPNIPASVTINEYVNLAKLYSTPHSGSYVNGML 266
Query: 151 DKVSR 155
D ++R
Sbjct: 267 DGIAR 271
>gi|260912453|ref|ZP_05918990.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
str. F0295]
gi|260633425|gb|EEX51578.1| N utilization substance protein NusB [Prevotella sp. oral taxon 472
str. F0295]
Length = 372
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D ++ R + + +S + W FSRL + I++ + E++
Sbjct: 201 EYKDEEDKDFARKLFRSTILNADQYQRYMSEN-SRNWDFSRLAYMDVVIMQIAIAEMLTF 259
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++PV V I+EYV +A + +IN +LD ++R
Sbjct: 260 PNIPVSVTINEYVELAKLYSTHRSGGYINGMLDTIAR 296
>gi|218691575|ref|YP_002399787.1| 16S rRNA methyltransferase B [Escherichia coli ED1a]
gi|254766857|sp|B7N0S9|RSMB_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|218429139|emb|CAR09947.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
ED1a]
Length = 429
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ ++ LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|295425233|ref|ZP_06817936.1| transcription antitermination factor NusB [Lactobacillus
amylolyticus DSM 11664]
gi|295065009|gb|EFG55914.1| transcription antitermination factor NusB [Lactobacillus
amylolyticus DSM 11664]
Length = 131
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA++ + +E E VE + L + + +I GV
Sbjct: 4 HESRKVAMQAIF---LANQDPELTTAEVE--------VKTVEMLDLEQLSAYSKTLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
M ++ + I++ L + W R++ I +IL + E+ + + + ++E + + D
Sbjct: 53 MLKRDELKEAIAAHLKKGWRIERVNPITIAILEIALYEIKDSAEIEPKAAVNEALNLCDD 112
Query: 137 FFYGDEPKFINAVLDKVSR 155
F D FIN +L +
Sbjct: 113 FTDPDAKPFINGILANFVK 131
>gi|258622988|ref|ZP_05718003.1| sun protein [Vibrio mimicus VM573]
gi|258584771|gb|EEW09505.1| sun protein [Vibrio mimicus VM573]
Length = 438
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 16 RAAAASALYQVVDLGQSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 63 LPRLESI--SQSLMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 120 PRLRGLINAVLRNYQRDQE 138
>gi|309804286|ref|ZP_07698363.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 11V1-d]
gi|312872493|ref|ZP_07732562.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2062A-h1]
gi|315653399|ref|ZP_07906321.1| transcription antitermination protein NusB [Lactobacillus iners
ATCC 55195]
gi|308163689|gb|EFO65959.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 11V1-d]
gi|311092075|gb|EFQ50450.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2062A-h1]
gi|315489324|gb|EFU78964.1| transcription antitermination protein NusB [Lactobacillus iners
ATCC 55195]
Length = 133
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A+QALY D +E A + ++ + + ++ I+ GV
Sbjct: 4 HDVRVIAMQALYLAD----------QVHEHEDVDAIKKKTMDVLDIKEFPDYAYEILQGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
M K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +
Sbjct: 54 MKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDE 113
Query: 137 FFYGDEPKFINAVLDKVSRK 156
F FIN +L K
Sbjct: 114 FSSAKSKGFINGILANFIDK 133
>gi|262172810|ref|ZP_06040488.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
gi|261893886|gb|EEY39872.1| ribosomal RNA small subunit methyltransferase B [Vibrio mimicus
MB-451]
Length = 426
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGQSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQSLMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|15833408|ref|NP_312181.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. Sakai]
gi|13363627|dbj|BAB37577.1| RNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
Length = 429
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ ++R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKNQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|313113577|ref|ZP_07799165.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
cf. prausnitzii KLE1255]
gi|310624092|gb|EFQ07459.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
cf. prausnitzii KLE1255]
Length = 444
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ D + I + V++ + +D ++ L + ++LD +
Sbjct: 21 FSNLVLDAELKRQQLEGRDKAFASAIFYTVLEHRGTLDYILCQFLPKG--LAKLDAPVRE 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
ILRA + + VPV ++E V + F +NAVL K
Sbjct: 79 ILRAALAQARYM-QVPVSAAVNEAVKLTRAFKKSSASGLVNAVLRK 123
>gi|220906120|ref|YP_002481431.1| sun protein [Cyanothece sp. PCC 7425]
gi|219862731|gb|ACL43070.1| sun protein [Cyanothece sp. PCC 7425]
Length = 443
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 13/139 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L Q G + + L + + +++G +
Sbjct: 2 NARQLAFITL-QAVHRGAYADVAV----------ERSLRQHPLTEERERRLATELVYGCV 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R++ +D L+ + + L ++L G+ +L + +P + V +
Sbjct: 51 RRQRTLDALVDQLAKK--PARQQPPDLRTLLHLGLYQLRYLNHIPANAAVHTTVELVKHR 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
F+N +L + R+
Sbjct: 109 GLAGLAGFVNGLLRQYIRQ 127
>gi|327313923|ref|YP_004329360.1| transcription antitermination factor NusB [Prevotella denticola
F0289]
gi|326944316|gb|AEA20201.1| transcription antitermination factor NusB [Prevotella denticola
F0289]
Length = 359
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
+ + + D ++ + + +S + W FSRL + I++
Sbjct: 194 EDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMSES-SRNWDFSRLAYMDVIIMQIA 252
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 253 IAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 296
>gi|325858411|ref|ZP_08172573.1| transcription antitermination factor NusB [Prevotella denticola
CRIS 18C-A]
gi|325483049|gb|EGC86037.1| transcription antitermination factor NusB [Prevotella denticola
CRIS 18C-A]
Length = 359
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
+ + + D ++ + + +S + W FSRL + I++
Sbjct: 194 EDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMSES-SRNWDFSRLAYMDVIIMQIA 252
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 253 IAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 296
>gi|312127904|ref|YP_003992778.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
gi|311777923|gb|ADQ07409.1| sun protein [Caldicellulosiruptor hydrothermalis 108]
Length = 410
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ E + + D F ++HGV+ K I+ I+ + R + +ILR
Sbjct: 2 DSLMEKFHQKLKNEKDRALFVELVHGVLRYKSLIEYYINFVAKKGVKDKR----ILNILR 57
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ +P ++E IA F+NA+L + R +
Sbjct: 58 VATYELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIE 108
>gi|307150111|ref|YP_003885495.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
gi|306980339|gb|ADN12220.1| NusB antitermination factor [Cyanothece sp. PCC 7822]
Length = 212
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
++ + + + V+ + E+ II V R++ I+ +++ +
Sbjct: 83 MVNEALELTQNAINRLAAMIEIPEIVQLSSQYEVREYAVEIIGTVFRRQKEIEQQLATGM 142
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ W SRL I ILR V E++ VP +V I+E V IA + + +FIN VL
Sbjct: 143 VD-WQLSRLPKIDRDILRIAVAEMLFLE-VPQKVAINEAVEIAKRYSDEEGYRFINGVLR 200
Query: 152 KVSRKEEIK 160
+V+ + +++
Sbjct: 201 RVTEQLKLE 209
>gi|91212715|ref|YP_542701.1| 16S rRNA methyltransferase B [Escherichia coli UTI89]
gi|117625571|ref|YP_858894.1| 16S rRNA methyltransferase B [Escherichia coli APEC O1]
gi|218560350|ref|YP_002393263.1| 16S rRNA methyltransferase B [Escherichia coli S88]
gi|237703018|ref|ZP_04533499.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|123265979|sp|Q1R644|RSMB_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493249|sp|A1AGI0|RSMB_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|254766854|sp|B7MCQ4|RSMB_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|91074289|gb|ABE09170.1| SUN protein [Escherichia coli UTI89]
gi|115514695|gb|ABJ02770.1| Sun protein [Escherichia coli APEC O1]
gi|218367119|emb|CAR04893.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli S88]
gi|226902282|gb|EEH88541.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490375|gb|ADE89131.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
IHE3034]
gi|307628323|gb|ADN72627.1| 16S rRNA methyltransferase B [Escherichia coli UM146]
gi|315284577|gb|EFU44022.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 110-3]
gi|323950202|gb|EGB46084.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H252]
gi|323954589|gb|EGB50372.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H263]
Length = 429
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|206577662|ref|YP_002236309.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae 342]
gi|224493255|sp|B5XNC2|RSMB_KLEP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|206566720|gb|ACI08496.1| ribosomal RNA small subunit methyltransferase B [Klebsiella
pneumoniae 342]
Length = 431
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKNKINLRSLAAQAIEQVIEQGQSLSNVLPPLQQ-------------KVSDKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQEA 131
>gi|320547878|ref|ZP_08042161.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
gi|320447418|gb|EFW88178.1| RNA methyltransferase Sun [Streptococcus equinus ATCC 9812]
Length = 440
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + + D I++G
Sbjct: 6 KNQARGLALLVL-----------ENVFEEGAYSNIALNQELKHTHLSQKDKSLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIEDRDKLDSWVYYLLM---LSLYQLLYLDKMPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL ++++ +
Sbjct: 112 NRGNKKGAEKFVNAVLRRLTKDD 134
>gi|307150080|ref|YP_003885464.1| sun protein [Cyanothece sp. PCC 7822]
gi|306980308|gb|ADN12189.1| sun protein [Cyanothece sp. PCC 7822]
Length = 450
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 13/136 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV L I + Y A + ++ +D +++G++ R
Sbjct: 8 RQLAVTIL-----------RDIYRKDAYTDIALDQGLKQAQLKSLDRGLVTELVYGIVRR 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D LI+ + + D L IL+ G+ +L +PV ++ V +A
Sbjct: 57 VRTLDQLITQLGKKTATQQPPD--LRIILQIGLYQLRYLDQIPVSAAVNTSVELAKKNQL 114
Query: 140 GDEPKFINAVLDKVSR 155
G +N +L + R
Sbjct: 115 GKLSGVVNGILRQYDR 130
>gi|325270436|ref|ZP_08137040.1| NusB family protein [Prevotella multiformis DSM 16608]
gi|324987232|gb|EGC19211.1| NusB family protein [Prevotella multiformis DSM 16608]
Length = 385
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
+ + + D ++ + + +S + W FSRL + I++
Sbjct: 194 EDQELLPEYRDEEDRDFAVKLFRATILNADDYQHYMSES-SRNWDFSRLAYMDVVIMQIA 252
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 253 IAEMLTFPNIPVSVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 296
>gi|119512103|ref|ZP_01631196.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
gi|119463261|gb|EAW44205.1| Fmu, rRNA SAM-dependent methyltransferase [Nodularia spumigena
CCY9414]
Length = 449
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R A AL D+ + ++ A + + D +++G
Sbjct: 2 TNPRQIAFNAL--RDVHKGAYADV----------ALNRALQKVTLPNHDRRLLTELVYGS 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D LI T+K + L SIL G+ +L +P ++ V +A +
Sbjct: 50 VRRQRTLDTLIDQLATKKS--HQQPKDLRSILHLGLYQLRYQERIPASAAVNTTVQLAKE 107
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ F+N +L + R
Sbjct: 108 NGFSGLTGFVNGLLRQYIR 126
>gi|297559831|ref|YP_003678805.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844279|gb|ADH66299.1| Fmu (Sun) domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 489
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
S R AR A L + ++ + R D +
Sbjct: 30 SPPRDPARRVAYDVLRAVGQRDAYANLLLPALLSER-----------GISGRDAALATEL 78
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+G + + D ++ +C+ + + +D +LR G +L+ +P +S V
Sbjct: 79 TYGTLRLQGTYDAILEACVDR--TLASVDTEALPLLRLGAHQLLSTK-IPPHAAVSATVD 135
Query: 133 IAHDFFYGDEPKFINAVLDKV-SRKEEIKRSGCVSA 167
+A +F+NAVL KV +R + + V+
Sbjct: 136 LARRVVGHHRGRFVNAVLRKVSARDLDA-WTAVVAP 170
>gi|229552470|ref|ZP_04441195.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|258539841|ref|YP_003174340.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
gi|229314207|gb|EEN80180.1| RNA methyltransferase [Lactobacillus rhamnosus LMS2-1]
gi|257151517|emb|CAR90489.1| tRNA and rRNA cytosine-C5-methytransferase (sun protein)
[Lactobacillus rhamnosus Lc 705]
Length = 446
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AVQ L ++ G Y + + D
Sbjct: 1 MTPNNP----RLLAVQTLTRVMGKGG-----------YSNLTLDHVITKYQLDSRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++GV+ + +D L++ + + +LD + +L+ V +L VP + +
Sbjct: 46 TNIVYGVIQHQLTLDYLLAPFVKTR----QLDTWVRCLLQTSVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
IA + KF+ VL + +RSG +T
Sbjct: 102 STEIAKKLGHQGVAKFVTGVLR------QAQRSGYPDPMT 135
>gi|288933298|ref|YP_003437357.1| sun protein [Klebsiella variicola At-22]
gi|288888027|gb|ADC56345.1| sun protein [Klebsiella variicola At-22]
Length = 431
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKNKINLRSLAAQAIEQVIEQGQSLSNVLPPLQQ-------------KVSDKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQEA 131
>gi|88802775|ref|ZP_01118302.1| putative N utilization substance protein [Polaribacter irgensii
23-P]
gi|88781633|gb|EAR12811.1| putative N utilization substance protein [Polaribacter irgensii
23-P]
Length = 312
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+ + + ++ + +I+ T W R+ I +++ + E + S
Sbjct: 203 KDKDDEEFVSKLFRKTVLKQADYEPMIAEK-TPNWESDRIAGIDMILIKMAIAEFLNFSS 261
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P +V I+EY+ I+ D+ FIN VLDK++++
Sbjct: 262 IPTKVTINEYIEISKDYSTSRSSFFINGVLDKIAKE 297
>gi|282891352|ref|ZP_06299854.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498849|gb|EFB41166.1| hypothetical protein pah_c050o153 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 187
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 12/147 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R LY D S E++ + E + V+++
Sbjct: 9 REVVFVLLYSQDCGRVSEQELVEL-----------VMKELAVTKKTAYSALEKVELVLEK 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K ID LI + + ++ F R+ + ++LR G+ E++ S+P +V I+E + ++ F
Sbjct: 58 KAEIDDLI-ANTSREYRFERIQTVEKNVLRLGIYEMLFDDSIPPKVAIAEAIRLSRKFST 116
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ F+NA+LD + + +E K S ++
Sbjct: 117 PESATFVNALLDHIYQTKEGKVSDDLA 143
>gi|227505027|ref|ZP_03935076.1| transcription antitermination protein NusB [Corynebacterium
striatum ATCC 6940]
gi|227198391|gb|EEI78439.1| transcription antitermination protein NusB [Corynebacterium
striatum ATCC 6940]
Length = 175
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 7/143 (4%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
+Y+ + II + + D + E+ ++I+ G + ID
Sbjct: 24 DIMYEAENRDVDPVAIIEDRVSLARDHDNGVA-------PVAEYTQIIVKGAAEELDVID 76
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
I L+ W R+ + +I+R V E++ VP + E V +A ++ P
Sbjct: 77 ETIERYLSADWELHRIPAVDRAIMRVAVWEILFNEDVPNATALVEGVELASEYSNDQAPP 136
Query: 145 FINAVLDKVSRKEEIKRSGCVSA 167
+I+AVLD V + + V+A
Sbjct: 137 YIHAVLDDVIQAQSADNPMSVAA 159
>gi|39998462|ref|NP_954413.1| Sun protein [Geobacter sulfurreducens PCA]
gi|39985409|gb|AAR36763.1| Sun protein [Geobacter sulfurreducens PCA]
gi|298507406|gb|ADI86129.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 448
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R +A L +I+ T+ D +++GV+ R
Sbjct: 9 RRSAFDILVRIE-----------RERTFAEPLIDRELSGGALKGPDRGLLTELVYGVLRR 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+ + ++L+ + +LR G+ ++ +PV ++E V +A +
Sbjct: 58 TATLDYLVDLFCATRA--AKLERSVLILLRLGLYQIFFLDRIPVSAAVNETVTLAREKS- 114
Query: 140 GDEPKFINAVLDKVSRKE 157
+NAVL + R+
Sbjct: 115 PRASGLVNAVLRRSDRER 132
>gi|54310619|ref|YP_131639.1| putative Sun protein [Photobacterium profundum SS9]
gi|46915062|emb|CAG21837.1| Putative Sun protein [Photobacterium profundum SS9]
Length = 431
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q ++Q+ G S + + + D + I +GV+
Sbjct: 4 RAAAAQVVFQVVDQGQSLSAALP-------------AAQQNIRERDHALLQEICYGVLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + ++ G+ +L +P ++E V D
Sbjct: 51 LPRLESI--TTHLMDKPLKGKQRAFHHLILVGLYQLGHMR-IPAHAAVAETVNATKDLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INA+L R++E + VS
Sbjct: 108 TQLRGLINAILRNYQRQQEQLDAQSVS 134
>gi|229828532|ref|ZP_04454601.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
14600]
gi|229793126|gb|EEP29240.1| hypothetical protein GCWU000342_00596 [Shuttleworthia satelles DSM
14600]
Length = 429
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R +Q L + G + ++ D + + GV++R
Sbjct: 4 REIVLQILSAVLEEGAYSHLLLQAVLDKYAYLD----------KRQRAFISRLTVGVIER 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDFF 138
K +D +++ + ++ ++ + LR G+ +++ +VP +E V + A +
Sbjct: 54 KISLDYILNHY--SRTPVKKMKPMIRNSLRMGLYQILYMDAVPDSAACNESVKLIARRYR 111
Query: 139 YGDEPKFINAVLDKVSRKEEI 159
F+N +L ++R +
Sbjct: 112 P--LKGFVNGLLRNIARHRQE 130
>gi|312134888|ref|YP_004002226.1| sun protein [Caldicellulosiruptor owensensis OL]
gi|311774939|gb|ADQ04426.1| sun protein [Caldicellulosiruptor owensensis OL]
Length = 423
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ E + + D F ++HGV+ K ID I+ + R + +ILR
Sbjct: 15 DSLMEKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVTKKGVKDKR----ILNILR 70
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ +P ++E +A F+NA+L + R +
Sbjct: 71 VATYELLFLEKIPEYATVNEACEVASKIS-PHLKAFVNAILRNIIRNKNQIE 121
>gi|312864944|ref|ZP_07725174.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
downei F0415]
gi|311099564|gb|EFQ57778.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
downei F0415]
Length = 439
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A++ L ++ G Y A S D +++G +
Sbjct: 9 ARGLALKILEEVFQEG-----------AYSNLALKRGLSGSSLSQQDKALVTELVYGTVA 57
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
RK ++ ++ + ++ L + +L+ +P +++E V +A
Sbjct: 58 RKITLEWQLAHVIEDRDKLESWVYTLLM---LSLYQLLYLDKIPSHAVLNEAVELAKSRS 114
Query: 139 YGDEPKFINAVLDKVSR 155
K +NAVL K+S+
Sbjct: 115 QRGADKLVNAVLRKLSK 131
>gi|217967819|ref|YP_002353325.1| sun protein [Dictyoglomus turgidum DSM 6724]
gi|217336918|gb|ACK42711.1| sun protein [Dictyoglomus turgidum DSM 6724]
Length = 430
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A + LY ++ ++ + + E + +++GV
Sbjct: 4 RLRAAEILYDLERREAYLNILLRNRLPFYDLSLKEKH-----------FITELVYGVTRW 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + L + +LR V + + V ++E V IA
Sbjct: 53 KITLDYI----WSRFVRRDNLSLFSKVLLRLVVYHVYFLKDTILPVAVNEIVEIAKKKV- 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
E K INAV + R++
Sbjct: 108 PKEAKLINAVSRNIIREKN 126
>gi|309806256|ref|ZP_07700269.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
gi|308167240|gb|EFO69406.1| NusB family protein [Lactobacillus iners LactinV 03V1-b]
Length = 284
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|209693697|ref|YP_002261625.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
gi|208007648|emb|CAQ77758.1| ribosomal RNA small subunit methyltransferase B [Aliivibrio
salmonicida LFI1238]
Length = 444
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + +YQ+ G S + + +S D + I +GV+
Sbjct: 22 RAAAAKVIYQVVDQGHSLSSALP-------------KAQSEIKPRDQALLQEICYGVLRF 68
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + ++ G+ +L +P + E V +
Sbjct: 69 LPRLESVAQSLMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKNLKG 125
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
IN VL R +E + +S
Sbjct: 126 PKLRGLINGVLRSYQRSQEELDAKSIS 152
>gi|288799718|ref|ZP_06405177.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
gi|288332966|gb|EFC71445.1| NusB family protein [Prevotella sp. oral taxon 299 str. F0039]
Length = 322
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-VDLEWFRVIIHGVMDRKQHI 83
++LY D T +I + + + ++ Y D E+ R + +
Sbjct: 166 KSLYWNDDKEVVDTFVIKTIKKFDEANKDQQELLPEYRDVEDKEFARKLFRATILNADQY 225
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+S + W FSRL + I++ + E++ S+PV V I+EYV +A +
Sbjct: 226 QSYMSET-SRNWDFSRLAYMDVVIMQIAIAEMLTFPSIPVSVTINEYVNLAKLYSTSRSG 284
Query: 144 KFINAVLDKVSR 155
+IN +LD ++R
Sbjct: 285 GYINGMLDAIAR 296
>gi|78484536|ref|YP_390461.1| sun protein [Thiomicrospira crunogena XCL-2]
gi|78362822|gb|ABB40787.1| Ribosomal RNA small subunit methyltransferase B [Thiomicrospira
crunogena XCL-2]
Length = 436
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 15/141 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A++ + G S ++ ++E + + + ++ G +
Sbjct: 4 NSRYIALKICLTVIEHGRSLSQSLAEGLAQFSD------------RRERAFTQNLVLGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ ++ + K D + ++ G+ +++ P +SE V +
Sbjct: 52 RWQERLEAI--RSHLLKKPLKAKDEDVNQLILLGLYQILYMD-TPEHAAVSETVNLTKSL 108
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
IN VL R ++
Sbjct: 109 KKPWARGLINGVLRTFLRDKD 129
>gi|225010642|ref|ZP_03701112.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
gi|225005195|gb|EEG43147.1| NusB antitermination factor [Flavobacteria bacterium MS024-3C]
Length = 315
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ + L D E+ + ++ K+ I ++ T KW R+ I +L+ +
Sbjct: 199 DFIKDLAILEDDAEFAQNLLVKTAL-KESILAKETADKTPKWDKDRIADIDGILLKMSIC 257
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
EL+ S+PV V I+EY+ IA ++ FIN +LD +S++ +
Sbjct: 258 ELLFFPSIPVRVTINEYLEIAKEYSTPKSSIFINGILDSLSKEYK 302
>gi|300771100|ref|ZP_07080976.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
gi|300761770|gb|EFK58590.1| NusB family protein [Sphingobacterium spiritivorum ATCC 33861]
Length = 304
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
+QAL S+ +L + D E+ ++ + +
Sbjct: 166 VLQALIAKTFKNFSSE----------IPQQNKLAELTQNWLDDREFVLDLLANTIRYGEE 215
Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
LI++ T+ W R+ ++ ++R + ELI S+PV+V I+EY+ ++ F
Sbjct: 216 YQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKS 274
Query: 143 PKFINAVLDKVS----RKEEIKRSGC 164
FIN +LDK+ ++ I++ G
Sbjct: 275 NTFINGILDKILADLNQQGRIRKQGR 300
>gi|315038645|ref|YP_004032213.1| transcriptional termination factor [Lactobacillus amylovorus GRL
1112]
gi|325957127|ref|YP_004292539.1| transcription termination factor [Lactobacillus acidophilus 30SC]
gi|312276778|gb|ADQ59418.1| transcriptional termination factor [Lactobacillus amylovorus GRL
1112]
gi|325333692|gb|ADZ07600.1| transcription termination factor [Lactobacillus acidophilus 30SC]
Length = 130
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E A L + + +I GV
Sbjct: 4 HESRKVAMQAIY---LANQEPDLNAEEVEAKVVTALN--------LKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ + + +S L + W R+ I+ +I+ + E+ + + ++E + + +
Sbjct: 53 LENRADLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 113 FAEPKEKPFINGMLANFV 130
>gi|134098684|ref|YP_001104345.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
erythraea NRRL 2338]
gi|133911307|emb|CAM01420.1| ribosomal RNA small subunit methyltransferase [Saccharopolyspora
erythraea NRRL 2338]
Length = 430
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 3/127 (2%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + Y A L + D + +G + +D +I C +
Sbjct: 1 MRDRDAYANLALPALLKQRRISGRDAALATELTYGACRAQGLLDAVIGECSAR--PLDGI 58
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
D L LR G +L+ +P ++ V I + F NAVL ++S ++E +
Sbjct: 59 DPELLDALRLGAYQLL-RTRIPAHAAVASTVDIVRAESGSRQAGFANAVLRRISERDEQE 117
Query: 161 RSGCVSA 167
++
Sbjct: 118 WIDRLAP 124
>gi|94266702|ref|ZP_01290375.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
gi|93452643|gb|EAT03206.1| Fmu, rRNA SAM-dependent methyltransferase [delta proteobacterium
MLMS-1]
Length = 484
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R +Q L + G +++ AD D +++GV+
Sbjct: 8 RRVTLQLLLVQEQSGQPVEQLLEHRLREHPLADGR----------DRRLLEALVYGVLRW 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +++ + +++ + + LR G+L+L+ +P I+E +
Sbjct: 58 RGLLDQVVAGY--ARHPLAKMKPLTLAALRLGILQLLILERLPASAAINETIKALRAARQ 115
Query: 140 G-DEPKFINAVLDKVSRKEEIKRSGC 164
F+NAVL K + +I+R G
Sbjct: 116 PRWLTGFVNAVLRKAA--ADIERLGR 139
>gi|293380300|ref|ZP_06626374.1| transcription antitermination factor NusB [Lactobacillus crispatus
214-1]
gi|290923115|gb|EFE00044.1| transcription antitermination factor NusB [Lactobacillus crispatus
214-1]
Length = 131
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 11/139 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E V ++ L + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEA--------KVVATLNLKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + +
Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDK 112
Query: 137 FFYGDEPKFINAVLDKVSR 155
F E FIN +L +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131
>gi|315282824|ref|ZP_07871146.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
gi|313613532|gb|EFR87354.1| ribosomal RNA small subunit methyltransferase B [Listeria marthii
FSL S4-120]
Length = 400
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G RK +D ++ L D + ++LR V +L VP I++
Sbjct: 2 LTELVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILN 56
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E IA D + KF+N VL V RK
Sbjct: 57 EAGDIAKDLGHQGVTKFVNGVLRNVIRK 84
>gi|224538936|ref|ZP_03679475.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519454|gb|EEF88559.1| hypothetical protein BACCELL_03833 [Bacteroides cellulosilyticus
DSM 14838]
Length = 308
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEA--KNGANQTLLPEFKDEEDQEFARRLFRRAILNCDYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T W R+ + I++ + E++ ++PV V ++EYV IA + F+N L
Sbjct: 234 -TRNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKVYSTIKSGSFVNGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|82778586|ref|YP_404935.1| 16S rRNA methyltransferase B [Shigella dysenteriae Sd197]
gi|309785611|ref|ZP_07680242.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
gi|123742076|sp|Q32B61|RSMB_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|81242734|gb|ABB63444.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308926731|gb|EFP72207.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1617]
Length = 429
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + S + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMAR--PMSGKQRTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|309804769|ref|ZP_07698833.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
gi|308165879|gb|EFO68098.1| NusB family protein [Lactobacillus iners LactinV 09V1-c]
Length = 284
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|317495194|ref|ZP_07953564.1| transcription antitermination factor NusB [Gemella moribillum M424]
gi|316914616|gb|EFV36092.1| transcription antitermination factor NusB [Gemella moribillum M424]
Length = 131
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R A + L+QI+ EL + +
Sbjct: 1 MKSRHELREAVFKILFQIENTELDY---------------KELLELEQEEIANSSYVNNT 45
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++D+ + ID +IS+ L + W RL + ILR E++ +P +V I+E V
Sbjct: 46 LTEIIDKLEEIDNIISNNLKD-WKLERLSKMDRQILRISAYEILHSD-IPYKVSINEAVE 103
Query: 133 IAHDFF-YGDEPKFINAVLDKVS 154
++ + + KFIN VL +
Sbjct: 104 LSKKYSEKDESYKFINGVLKGIV 126
>gi|312793229|ref|YP_004026152.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180369|gb|ADQ40539.1| sun protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 410
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ E + + D F ++HGV+ K ID I+ + D + +ILR
Sbjct: 2 DSLMEKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK----DRRILNILR 57
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ +P ++E IA F+NA+L + R +
Sbjct: 58 VATYELLFLEKIPEYATVNEACEIASKIS-PHLKAFVNAILRNIIRNKNQIE 108
>gi|256026704|ref|ZP_05440538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
Length = 435
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLDINSKEKAFITEIFYGVIRNKKFLDYIIERYTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S + I+ E + + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMDS-DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126
>gi|227540276|ref|ZP_03970325.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227239812|gb|EEI89827.1| N utilization substance protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 300
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 23 AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQH 82
+QAL S+ +L + D E+ ++ + +
Sbjct: 162 VLQALIAKTFKNFSSE----------IPQQNKLAELTQNWLDDREFVLDLLANTIRYGEE 211
Query: 83 IDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDE 142
LI++ T+ W R+ ++ ++R + ELI S+PV+V I+EY+ ++ F
Sbjct: 212 YQSLIAAK-TKNWEADRIALLDTILMRMAICELINFSSIPVKVTINEYIELSKVFSTLKS 270
Query: 143 PKFINAVLDKVS----RKEEIKRSGC 164
FIN +LDK+ ++ I++ G
Sbjct: 271 NTFINGILDKILADLNQQGRIRKQGR 296
>gi|111024114|ref|YP_707086.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
RHA1]
gi|110823644|gb|ABG98928.1| ribosomal RNA small subunit methyltransferase [Rhodococcus jostii
RHA1]
Length = 475
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 13/175 (7%)
Query: 3 IQDNKKDLKL-------SHRR-GIARL-AAVQ-ALYQIDIIGCSTTEIISEYETYRFCAD 52
+ ++++ + + R AR A Q L Q + + E + Y
Sbjct: 1 MSESRRPARRGQSGSGARNNRPRQARRPDASQSGLDQPRLAARDVLRAVRERDAYANLVL 60
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
L E D + +G + +D +I+ C + +D L +L+ G
Sbjct: 61 PGLLRERRLDGRDAALATELAYGAARARGLLDAVIADC--AGRPIAEIDGPLLDVLQLGA 118
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+L+ P ++ V + + F+NAVL +VS + E + ++
Sbjct: 119 YQLLRTRVAP-HAAVATSVDLVRAEAGPGKAGFVNAVLRRVSERSEAEWVERLAP 172
>gi|191638611|ref|YP_001987777.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
gi|190712913|emb|CAQ66919.1| RRNA methylase (Putative) [Lactobacillus casei BL23]
gi|327382653|gb|AEA54129.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei LC2W]
gi|327385847|gb|AEA57321.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
casei BD-II]
Length = 446
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 19/161 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AV+ L + G Y + D
Sbjct: 1 MTPNNP----RLLAVETL--SRVTGQGG---------YSNLTLDHVINSHKLTPRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++GV+ + +D ++ + + +LD + +L V +L VP + +
Sbjct: 46 TNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDIAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
IA + KF+ VL R + + +
Sbjct: 102 STEIAKKLGHQGIAKFVTGVLRNAQRTGFPDPAAIADPVKR 142
>gi|75906501|ref|YP_320797.1| transcription antitermination protein NusB [Anabaena variabilis
ATCC 29413]
gi|119372276|sp|Q3MGI4|NUSB_ANAVT RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|75700226|gb|ABA19902.1| NusB antitermination factor [Anabaena variabilis ATCC 29413]
Length = 211
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 47 YRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ A E + D E + ++ + + + ID I+S L + W +RL I
Sbjct: 95 NQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERGMIDEQITSALVD-WQVTRLAQI 153
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
ILR V E++ ++P V I+E V +A + + +FIN VL +VS +++
Sbjct: 154 DRDILRIAVAEMMFL-NLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208
>gi|304382450|ref|ZP_07364948.1| NusB family protein [Prevotella marshii DSM 16973]
gi|304336403|gb|EFM02641.1| NusB family protein [Prevotella marshii DSM 16973]
Length = 329
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + +S + W FSRL + I++ + E++
Sbjct: 201 EYKDPEDKAFACKLFRATILNADQYQHYMSET-SRNWDFSRLAYMDVVIMQIAIAEMLTF 259
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++P+ V I+EYV +A + +IN +LD ++R
Sbjct: 260 PNIPISVTINEYVELAKLYSTPKSGAYINGMLDTIAR 296
>gi|259501554|ref|ZP_05744456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302191472|ref|ZP_07267726.1| transcription antitermination factor NusB [Lactobacillus iners
AB-1]
gi|309805466|ref|ZP_07699511.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 09V1-c]
gi|309808800|ref|ZP_07702685.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 01V1-a]
gi|309809548|ref|ZP_07703406.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
2503V10-D]
gi|312871882|ref|ZP_07731966.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
3008A-a]
gi|312874396|ref|ZP_07734426.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2052A-d]
gi|312874533|ref|ZP_07734558.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2053A-b]
gi|325911876|ref|ZP_08174280.1| transcription antitermination factor NusB [Lactobacillus iners UPII
143-D]
gi|325913448|ref|ZP_08175814.1| transcription antitermination factor NusB [Lactobacillus iners UPII
60-B]
gi|329919881|ref|ZP_08276819.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
1401G]
gi|259167072|gb|EEW51567.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|308165117|gb|EFO67355.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 09V1-c]
gi|308167926|gb|EFO70059.1| transcription antitermination factor NusB [Lactobacillus iners
LactinV 01V1-a]
gi|308170220|gb|EFO72255.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
2503V10-D]
gi|311089924|gb|EFQ48343.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2053A-b]
gi|311090008|gb|EFQ48422.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
2052A-d]
gi|311092604|gb|EFQ50964.1| transcription antitermination factor NusB [Lactobacillus iners LEAF
3008A-a]
gi|325476382|gb|EGC79544.1| transcription antitermination factor NusB [Lactobacillus iners UPII
143-D]
gi|325477217|gb|EGC80363.1| transcription antitermination factor NusB [Lactobacillus iners UPII
60-B]
gi|328936971|gb|EGG33401.1| transcription antitermination factor NusB [Lactobacillus iners SPIN
1401G]
Length = 133
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R+ A+QALY D +E A + ++ + + ++ I+ GV
Sbjct: 4 HDVRVIAMQALYLAD----------QVHEHEDVDAIKKKTMDVLDIKEFPDYAYEILQGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
M K ID ++ L + W+ RL+ I IL G+ E+ + ++E + + +
Sbjct: 54 MKEKSSIDANLAKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIKPVSALNEALNMCDE 113
Query: 137 FFYGDEPKFINAVLDKVSRK 156
F FIN +L K
Sbjct: 114 FSSAKSKGFINGILANFIDK 133
>gi|227878894|ref|ZP_03996799.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
gi|256849770|ref|ZP_05555201.1| transcriptional termination factor [Lactobacillus crispatus
MV-1A-US]
gi|262046531|ref|ZP_06019492.1| transcriptional antitermination factor NusB [Lactobacillus
crispatus MV-3A-US]
gi|295693204|ref|YP_003601814.1| transcription termination factor [Lactobacillus crispatus ST1]
gi|227861528|gb|EEJ69142.1| transcriptional termination factor [Lactobacillus crispatus JV-V01]
gi|256713259|gb|EEU28249.1| transcriptional termination factor [Lactobacillus crispatus
MV-1A-US]
gi|260572980|gb|EEX29539.1| transcriptional antitermination factor NusB [Lactobacillus
crispatus MV-3A-US]
gi|295031310|emb|CBL50789.1| Transcription termination factor [Lactobacillus crispatus ST1]
Length = 131
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E V ++ L + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEA--------KVVATLNLKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + + +
Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEINHSDEIDAKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSR 155
F E FIN +L +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131
>gi|328466174|gb|EGF37331.1| 16S rRNA methyltransferase B [Listeria monocytogenes 1816]
Length = 399
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G RK +D ++ L D + ++LR V +L VP I++
Sbjct: 1 MTELVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTFLDKVPEHAILN 55
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E IA D + KF+N VL V RK
Sbjct: 56 EAGDIAKDLGHQGVTKFVNGVLRNVIRK 83
>gi|331697235|ref|YP_004333474.1| Fmu (Sun) domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326951924|gb|AEA25621.1| Fmu (Sun) domain protein [Pseudonocardia dioxanivorans CB1190]
Length = 482
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR+AA + L + E + Y A + D + +G +
Sbjct: 38 ARVAAHELL-----------TAVRERDAYANLAMPAILRRHRLRDRDAALATELGYGTLR 86
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D ++++C R++ L LR G +L+ +P + V + D
Sbjct: 87 ALGLLDAVVAACADR--PLHRIEPPLVDALRLGAYQLL-RTRIPAHAAVDTIVDLVRDRA 143
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F+NA+L KV+ ++E + ++ +
Sbjct: 144 GSRSAGFVNAILRKVAEQDEAAWTAQLAPSVE 175
>gi|293402263|ref|ZP_06646401.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304370|gb|EFE45621.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 415
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 18/143 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+ A AL QI I + + + H D I++G +
Sbjct: 2 NARMFAYTALCQICIHKTYSNLYLRKELD-------------KAEHKDKGLITTIVYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + + +L +L +P II+E V IA
Sbjct: 49 QNYRLCRYQWEDMVQKLPKEET-----AVLLDMSAYQLFYMDKLPAYAIINEAVEIAKKH 103
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ +NAVL KV ++ + +
Sbjct: 104 GGKKQGALVNAVLHKVMQRGQRE 126
>gi|312899118|ref|ZP_07758496.1| NusB family protein [Megasphaera micronuciformis F0359]
gi|310619785|gb|EFQ03367.1| NusB family protein [Megasphaera micronuciformis F0359]
Length = 166
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 42 SEYETYRFCADTELDVESVYLHVDLE-----WFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
+ + ++E +V S + E + ++ V + + ++ LI + W
Sbjct: 45 DCLDAHAVPFESEDEVLSEATEDNSENDTNSYCEYLVSTVSEHGEELNDLI-RTYAKGWD 103
Query: 97 FSRLDMILCSILRAGVLELIE-CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+++ +I++ E + + +II+E V +A F D KF+N +L +R
Sbjct: 104 LRQMNKADKTIMKMAFCEFVYPKEKLASAIIINEAVLLAKQFGGADSSKFVNGILGAYAR 163
Query: 156 KEE 158
E
Sbjct: 164 THE 166
>gi|291284647|ref|YP_003501465.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|209757338|gb|ACI76981.1| RNA methyltransferase [Escherichia coli]
gi|209757344|gb|ACI76984.1| RNA methyltransferase [Escherichia coli]
gi|290764520|gb|ADD58481.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|320645091|gb|EFX14107.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. 493-89]
gi|320650402|gb|EFX18868.1| 16S rRNA methyltransferase B [Escherichia coli O157:H- str. H 2687]
gi|320661379|gb|EFX28794.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. USDA
5905]
Length = 429
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|238854805|ref|ZP_04645135.1| transcription antitermination factor NusB [Lactobacillus jensenii
269-3]
gi|260664036|ref|ZP_05864889.1| transcription antitermination factor NusB [Lactobacillus jensenii
SJ-7A-US]
gi|282933883|ref|ZP_06339231.1| transcription antitermination factor NusB [Lactobacillus jensenii
208-1]
gi|313472312|ref|ZP_07812804.1| transcription antitermination factor NusB [Lactobacillus jensenii
1153]
gi|238832595|gb|EEQ24902.1| transcription antitermination factor NusB [Lactobacillus jensenii
269-3]
gi|239529835|gb|EEQ68836.1| transcription antitermination factor NusB [Lactobacillus jensenii
1153]
gi|260561922|gb|EEX27891.1| transcription antitermination factor NusB [Lactobacillus jensenii
SJ-7A-US]
gi|281301972|gb|EFA94226.1| transcription antitermination factor NusB [Lactobacillus jensenii
208-1]
Length = 133
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 11/137 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA++ + I + ET +S+ L + II GV
Sbjct: 4 HDSRRIAMQAIF---LANGEPDLTIEQVET--------KVAKSLDLKEIPAYAHEIIAGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ I+ IS L + W R++ I +I+ + E+ + ++ ++E + + +
Sbjct: 53 LAKRPEIEADISKYLKKGWRLERVNRISVAIMEVAIFEISQSDAISAPAAVNEALILCEE 112
Query: 137 FFYGDEPKFINAVLDKV 153
F FIN +L
Sbjct: 113 FDDPKSKSFINGILANF 129
>gi|15803816|ref|NP_289850.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 EDL933]
gi|168752263|ref|ZP_02777285.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|168758516|ref|ZP_02783523.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|168764971|ref|ZP_02789978.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|168769150|ref|ZP_02794157.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|168777854|ref|ZP_02802861.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|168783855|ref|ZP_02808862.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|168786178|ref|ZP_02811185.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|168802718|ref|ZP_02827725.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|195939836|ref|ZP_03085218.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. EC4024]
gi|208808123|ref|ZP_03250460.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208812777|ref|ZP_03254106.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208820338|ref|ZP_03260658.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209396232|ref|YP_002272745.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4115]
gi|217326360|ref|ZP_03442444.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254795225|ref|YP_003080062.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str.
TW14359]
gi|261224593|ref|ZP_05938874.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254513|ref|ZP_05947046.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
FRIK966]
gi|46396973|sp|Q8XEE5|RSMB_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493246|sp|B5YT08|RSMB_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|12517918|gb|AAG58410.1|AE005556_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|187767005|gb|EDU30849.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4196]
gi|188013841|gb|EDU51963.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4113]
gi|188998877|gb|EDU67863.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4076]
gi|189354681|gb|EDU73100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4401]
gi|189361764|gb|EDU80183.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4486]
gi|189365121|gb|EDU83537.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4501]
gi|189373894|gb|EDU92310.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC869]
gi|189375353|gb|EDU93769.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC508]
gi|208727924|gb|EDZ77525.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4206]
gi|208734054|gb|EDZ82741.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4045]
gi|208740461|gb|EDZ88143.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4042]
gi|209157632|gb|ACI35065.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC4115]
gi|209757340|gb|ACI76982.1| RNA methyltransferase [Escherichia coli]
gi|209757342|gb|ACI76983.1| RNA methyltransferase [Escherichia coli]
gi|209757346|gb|ACI76985.1| RNA methyltransferase [Escherichia coli]
gi|217322581|gb|EEC31005.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. TW14588]
gi|254594625|gb|ACT73986.1| 16S rRNA m5C967 methyltransferase [Escherichia coli O157:H7 str.
TW14359]
gi|320191677|gb|EFW66327.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. EC1212]
gi|320639593|gb|EFX09187.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. G5101]
gi|326342537|gb|EGD66311.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1044]
gi|326344524|gb|EGD68273.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
O157:H7 str. 1125]
Length = 429
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|295105557|emb|CBL03101.1| ribosomal RNA small subunit methyltransferase RsmB
[Faecalibacterium prausnitzii SL3/3]
Length = 443
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ D + I + V++ + +D ++ L + ++LD +
Sbjct: 21 FSNLVLDAELKRQKLEGRDKAFASAIFYTVLEHRGTLDYILEQFLPKG--LAKLDAPVRE 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
ILRA + + VPV ++E V + F +NAVL K
Sbjct: 79 ILRAALAQARYM-QVPVSAAVNEAVKLTRTFKKSSASGLVNAVLRK 123
>gi|329921088|ref|ZP_08277611.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
gi|328934995|gb|EGG31484.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners SPIN 1401G]
Length = 437
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|34763758|ref|ZP_00144676.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27886472|gb|EAA23729.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 190
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIEKNTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S V + E +A + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMDSDNKGV-VWEATELAKKKYGVPISKFINGTLRNYLRNKDSE 126
>gi|326336653|ref|ZP_08202821.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691123|gb|EGD33094.1| NusB family protein [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 310
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+ + ++ + + + T +W R+ I +++ G+ E ++ S
Sbjct: 201 KDESDKEFGKELLRKTILNDELFHQYLVEK-TPQWDTERIAEIDAILIKMGITEFLKFPS 259
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR----KEEIKRSGC 164
+PV+V ++EYV IA ++ FIN +LD +S+ + ++K+ G
Sbjct: 260 IPVKVTLNEYVEIAKEYSTPKSSVFINGILDTLSKDFIQEGKLKKIGR 307
>gi|323974759|gb|EGB69872.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TW10509]
Length = 456
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 28 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 73
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 74 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 130
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 131 EGAVAIKRPQLKGLINGVLRQFQRQQEE 158
>gi|260591412|ref|ZP_05856870.1| NusB family protein [Prevotella veroralis F0319]
gi|260536604|gb|EEX19221.1| NusB family protein [Prevotella veroralis F0319]
Length = 357
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D E+ + + +S + W FSRL + I++ + E++ ++
Sbjct: 204 DEEDREFAVKLFRSTILNADEYQRYMSES-SRNWDFSRLAYMDVVIMQIAIAEMMTFPNI 262
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P V I+EYV +A + +IN +LD ++R
Sbjct: 263 PATVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 296
>gi|218706896|ref|YP_002414415.1| 16S rRNA methyltransferase B [Escherichia coli UMN026]
gi|293406886|ref|ZP_06650810.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298382627|ref|ZP_06992222.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300896636|ref|ZP_07115153.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331664901|ref|ZP_08365802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
gi|254766859|sp|B7NDR0|RSMB_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|218433993|emb|CAR14910.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
UMN026]
gi|284923295|emb|CBG36389.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
042]
gi|291425697|gb|EFE98731.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1412]
gi|298276463|gb|EFI17981.1| 16S rRNA methyltransferase B [Escherichia coli FVEC1302]
gi|300359513|gb|EFJ75383.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 198-1]
gi|331057411|gb|EGI29397.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA143]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|188997200|ref|YP_001931451.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932267|gb|ACD66897.1| NusB antitermination factor [Sulfurihydrogenibium sp. YO3AOP1]
Length = 168
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 3 IQDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
++ K LK +R AR +++ L+ D ++ E+
Sbjct: 1 MKKKNKSLKFLRKRLLKAARDLSMRILFAYDFRKEDLFNVLEEFLN-----------TKK 49
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG--------- 111
+ E+ +++ + Q ID +I S L W F R+ I ++LR G
Sbjct: 50 FSPEIKEYVLKVVNFYNENSQEIDDIIKSHLKN-WRFERIGYIERAVLRLGVSELLIIHS 108
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
E E + ++ + + + + KF+N +L K++++ E + +TQ
Sbjct: 109 KEESKELKDKEIRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 168
>gi|312871585|ref|ZP_07731677.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
gi|311092810|gb|EFQ51162.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 3008A-a]
Length = 437
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|302872122|ref|YP_003840758.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574981|gb|ADL42772.1| sun protein [Caldicellulosiruptor obsidiansis OB47]
Length = 423
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
L++++ S + + E + + D F ++HGV+ K ID
Sbjct: 3 LFEVEKKKFSGMDSLM-----------EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYY 51
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
I+ + R + +ILR EL+ +P ++E +A F+
Sbjct: 52 INFVTKKGVKDKR----ILNILRVATYELLFLEKIPEYATVNEACEVASKIS-PHLKAFV 106
Query: 147 NAVLDKVSRKEE 158
NA+L + R +
Sbjct: 107 NAILRNIIRNKN 118
>gi|300814531|ref|ZP_07094787.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511358|gb|EFK38602.1| NusB family protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 238
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
+ +S D + + I GV+ + ++D +I + K F ++ I+ I
Sbjct: 21 FLEEQLNIFKQSNISDRDFTFVKNITTGVIRNRTYLDYVIK--INSKIRFKKIHKIIAII 78
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L + + +P I+ E V +A + F+NA+L + K+++
Sbjct: 79 LEMAIYQCYFLDKIPNYSIVDESVKLAKLYGNKGSSSFVNAILRNIVSKDKV 130
>gi|215488588|ref|YP_002331019.1| 16S rRNA methyltransferase B [Escherichia coli O127:H6 str.
E2348/69]
gi|312968386|ref|ZP_07782596.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|254766853|sp|B7UK12|RSMB_ECO27 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|215266660|emb|CAS11099.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O127:H6 str. E2348/69]
gi|312287211|gb|EFR15121.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
2362-75]
gi|323189106|gb|EFZ74390.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
RN587/1]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|258626112|ref|ZP_05720963.1| sun protein [Vibrio mimicus VM603]
gi|258581638|gb|EEW06536.1| sun protein [Vibrio mimicus VM603]
Length = 438
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LYQ+ +G S + + + D + I +GV+ +
Sbjct: 16 RAAAASVLYQVVDLGQSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 63 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 119
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 120 PRLRGLINAVLRNYQRDQE 138
>gi|284991542|ref|YP_003410096.1| Fmu (Sun) domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284064787|gb|ADB75725.1| Fmu (Sun) domain protein [Geodermatophilus obscurus DSM 43160]
Length = 460
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARL A L + ++ + R + D + + +G +
Sbjct: 23 ARLTAFDVLDGVSGRDAYANLLLPQLLRERA---------ADLGERDAAFATQLAYGTLR 73
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +++ ++ + LD + +LR G +L++ VP + V +
Sbjct: 74 ATGTLDAVLAPLVSR--PLAELDPRVLDLLRLGAYQLLDLR-VPAHAAVDTTVALTRAIV 130
Query: 139 YGDEPKFINAVLDKVS 154
+NAVL KV+
Sbjct: 131 GTGASGLVNAVLRKVA 146
>gi|332877528|ref|ZP_08445275.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332684634|gb|EGJ57484.1| transcription antitermination factor NusB [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 310
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
AD EL E D E+ + + ++ LI S T+ W F+R+ ++
Sbjct: 190 DEAKGADQELLPEFK-DEEDREFAHRLFRNTLLNAEYYRKLI-SDNTKNWEFNRIALMDL 247
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
I++ + E++ ++P+ V ++EYV IA + ++N +LD VS+K ++
Sbjct: 248 LIMQIALAEILTFPNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKKLVAEK 303
>gi|262277174|ref|ZP_06054967.1| N utilization substance protein B [alpha proteobacterium HIMB114]
gi|262224277|gb|EEY74736.1| N utilization substance protein B [alpha proteobacterium HIMB114]
Length = 127
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 51/100 (51%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ + + G ++++ ++ ++S L+ + LD +L IL+ + EL C +
Sbjct: 28 KDPYIRHIKKVFKGYFEQEEQLNEILSRSLSAEIKQKNLDSLLNIILKTSIYELKFCEKI 87
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P +V+I++Y+ + F+ D+ + +N VLD V++
Sbjct: 88 PFKVVINQYLDVTAQFYGNDQKRLVNGVLDNVAKSLNSSN 127
>gi|297581922|ref|ZP_06943842.1| sun protein [Vibrio cholerae RC385]
gi|297533789|gb|EFH72630.1| sun protein [Vibrio cholerae RC385]
Length = 434
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGRSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|84496642|ref|ZP_00995496.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
gi|84383410|gb|EAP99291.1| putative RNA-binding Sun protein [Janibacter sp. HTCC2649]
Length = 500
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 18/166 (10%)
Query: 5 DNKKDLKLSHR-RGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
+ K S R + ARLAA L +D Y +
Sbjct: 21 SQRSLQKPSERAKHAEPARLAAYTLLRAVDDG------------AYANLEFPAIIRRHKL 68
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + G + + D +I S +D + +LR G +L+ V
Sbjct: 69 DSRDAAFATELAFGTLRMQGFYDAVIERAADRSTS--TIDSGVLDVLRLGAHQLLGMR-V 125
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P + V +A F+NAV+ ++S + + V
Sbjct: 126 PTHAAADQTVGLARTVSGAGASGFVNAVMRRISERTREEWVTQVVP 171
>gi|261749509|ref|YP_003257195.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497602|gb|ACX84052.1| antitermination protein NusB [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 312
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ ++ + + K+ + LI S ++ W+ R+ +I IL+ + E + ++
Sbjct: 204 NDENKKFIVSLYRNTIFHKREFNELI-SNISNNWNIERIAIIDLIILQMAICEFLYFPNI 262
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P + ++EY+ IA F FIN +LD+V +
Sbjct: 263 PPKATMNEYIEIAKIFCMDKSKTFINGILDQVFK 296
>gi|327183851|gb|AEA32298.1| transcription termination factor [Lactobacillus amylovorus GRL
1118]
Length = 130
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E A L + + +I GV
Sbjct: 4 HESRKVAMQAIY---LANQEPDLNAEEVEAKVVAALN--------LKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ + + +S L + W R+ I+ +I+ + E+ + + ++E + + +
Sbjct: 53 LENRVDLQSALSEHLKKGWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 113 FAEPKEKPFINGMLANFV 130
>gi|323173925|gb|EFZ59553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
LT-68]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|320187010|gb|EFW61722.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
CDC 796-83]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|331684931|ref|ZP_08385517.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
gi|331077302|gb|EGI48514.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H299]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|331654881|ref|ZP_08355880.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
gi|331046896|gb|EGI18974.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M718]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|300903537|ref|ZP_07121459.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|301305498|ref|ZP_07211590.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|300404410|gb|EFJ87948.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 84-1]
gi|300839193|gb|EFK66953.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 124-1]
gi|315255872|gb|EFU35840.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 85-1]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|288918235|ref|ZP_06412590.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
gi|288350405|gb|EFC84627.1| Fmu (Sun) domain protein [Frankia sp. EUN1f]
Length = 501
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 10 LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ S R ARL A + L +D G ++ R
Sbjct: 1 MNTSAPRRGGAADPARLLAWEVLRAVDERGAYANLMLPALLNRR-----------RLSPR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + +G + + +D ++ + + +D + LR G +L+ VP
Sbjct: 50 DRGFATELTYGSLRAQGTLDGVLGTVTSR--PVDTVDPPVRDALRLGTYQLLSTR-VPAR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
++ V + +F NAVL +V+ + E + +G V+
Sbjct: 107 AAVASTVELVRATCGERPVRFANAVLRRVAARVE-ETAGDVA 147
>gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
Length = 439
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 13/137 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L ++D G + + D L + +++G +
Sbjct: 3 ARQIAFEVLRRVDEGGAYASRAL----------DAALTGAGALDPREAGLATELVYGTLR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R +D ++ + LD LR G +L+ P + E V +
Sbjct: 53 RSLTLDAALAPH--SRRPVGALDPPARVALRLGAYQLLFM-GKPPHAAVGETVSLVKAVD 109
Query: 139 YGDEPKFINAVLDKVSR 155
+G ++NAVL ++R
Sbjct: 110 HGRAAGYVNAVLRALAR 126
>gi|74313807|ref|YP_312226.1| 16S rRNA methyltransferase B [Shigella sonnei Ss046]
gi|123759539|sp|Q3YWX1|RSMB_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|73857284|gb|AAZ89991.1| conserved hypothetical protein [Shigella sonnei Ss046]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|256843408|ref|ZP_05548896.1| transcription antitermination factor NusB [Lactobacillus crispatus
125-2-CHN]
gi|256614828|gb|EEU20029.1| transcription antitermination factor NusB [Lactobacillus crispatus
125-2-CHN]
Length = 131
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E V ++ L + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLTAEEVEA--------KVVATLNLKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++++ ++S L + W R+ + +I+ + E+ + + ++E + + +
Sbjct: 53 LEDRKNLQSELTSHLKKGWRLERVSQTVVAIMEVALFEIKHSDEIDAKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVSR 155
F E FIN +L +
Sbjct: 113 FAEPKEKPFINGMLANFVK 131
>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 435
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNVNSKEKAFITEIFYGVIRNKKFLDYIIEKNTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S V + E +A + KFIN L R ++++
Sbjct: 73 NLLRISIYQITFMDSDDKGV-VWEGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126
>gi|332085437|gb|EGI90603.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
5216-82]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYT-HIPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQEE 131
>gi|293416707|ref|ZP_06659344.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
gi|291431283|gb|EFF04268.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B185]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|157157639|ref|YP_001464756.1| 16S rRNA methyltransferase B [Escherichia coli E24377A]
gi|193066472|ref|ZP_03047516.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|193071559|ref|ZP_03052468.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194430276|ref|ZP_03062771.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209920754|ref|YP_002294838.1| 16S rRNA methyltransferase B [Escherichia coli SE11]
gi|218555846|ref|YP_002388759.1| 16S rRNA methyltransferase B [Escherichia coli IAI1]
gi|218696981|ref|YP_002404648.1| 16S rRNA methyltransferase B [Escherichia coli 55989]
gi|256020647|ref|ZP_05434512.1| 16S rRNA methyltransferase B [Shigella sp. D9]
gi|260846086|ref|YP_003223864.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|293453607|ref|ZP_06664026.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300815501|ref|ZP_07095726.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300822908|ref|ZP_07103044.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300918263|ref|ZP_07134867.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300921903|ref|ZP_07138058.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|301325146|ref|ZP_07218678.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|307315133|ref|ZP_07594716.1| sun protein [Escherichia coli W]
gi|309794564|ref|ZP_07688986.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|331670118|ref|ZP_08370957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331679357|ref|ZP_08380027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332281843|ref|ZP_08394256.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
gi|224493245|sp|A7ZSH7|RSMB_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|254766855|sp|B7LHZ0|RSMB_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|254766858|sp|B7M0Z4|RSMB_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|254766860|sp|B6I202|RSMB_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|157079669|gb|ABV19377.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E24377A]
gi|192925853|gb|EDV80503.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E22]
gi|192955147|gb|EDV85641.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E110019]
gi|194411665|gb|EDX27992.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B171]
gi|209914013|dbj|BAG79087.1| putative rRNA methylase [Escherichia coli SE11]
gi|218353713|emb|CAU99984.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
55989]
gi|218362614|emb|CAR00240.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI1]
gi|257761233|dbj|BAI32730.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
O103:H2 str. 12009]
gi|291321733|gb|EFE61164.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B088]
gi|300414524|gb|EFJ97834.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 115-1]
gi|300421704|gb|EFK05015.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 182-1]
gi|300524674|gb|EFK45743.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 119-7]
gi|300532393|gb|EFK53455.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 107-1]
gi|300847978|gb|EFK75738.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 78-1]
gi|306905482|gb|EFN36017.1| sun protein [Escherichia coli W]
gi|308121614|gb|EFO58876.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 145-7]
gi|315062580|gb|ADT76907.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli W]
gi|323162967|gb|EFZ48802.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E128010]
gi|323182767|gb|EFZ68168.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1357]
gi|323376833|gb|ADX49101.1| sun protein [Escherichia coli KO11]
gi|323944291|gb|EGB40367.1| ribosomal RNA small methyltransferase B [Escherichia coli H120]
gi|324017855|gb|EGB87074.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 117-3]
gi|324116322|gb|EGC10242.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E1167]
gi|331062180|gb|EGI34100.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA271]
gi|331072529|gb|EGI43854.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H591]
gi|332104195|gb|EGJ07541.1| 16S rRNA m5C967 methyltransferase S-adenosyl-L-methionine-dependent
[Shigella sp. D9]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|16131168|ref|NP_417747.1| 16S rRNA m(5)C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|89110722|ref|AP_004502.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. W3110]
gi|157162762|ref|YP_001460080.1| 16S rRNA methyltransferase B [Escherichia coli HS]
gi|170018476|ref|YP_001723430.1| 16S rRNA methyltransferase B [Escherichia coli ATCC 8739]
gi|170082809|ref|YP_001732129.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. DH10B]
gi|188493203|ref|ZP_03000473.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194439994|ref|ZP_03072052.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|238902379|ref|YP_002928175.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BW2952]
gi|253771888|ref|YP_003034719.1| 16S rRNA methyltransferase B [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254038449|ref|ZP_04872505.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|254163216|ref|YP_003046324.1| 16S rRNA methyltransferase B [Escherichia coli B str. REL606]
gi|256025984|ref|ZP_05439849.1| 16S rRNA methyltransferase B [Escherichia sp. 4_1_40B]
gi|300932181|ref|ZP_07147461.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|300946510|ref|ZP_07160776.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300955326|ref|ZP_07167708.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|301021178|ref|ZP_07185214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|301643892|ref|ZP_07243922.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|307139971|ref|ZP_07499327.1| 16S rRNA methyltransferase B [Escherichia coli H736]
gi|312972450|ref|ZP_07786624.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|331643984|ref|ZP_08345113.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|1169715|sp|P36929|RSMB_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493247|sp|B1X6E1|RSMB_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493248|sp|A8A593|RSMB_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493250|sp|B1IQ11|RSMB_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|259495485|sp|C4ZUE3|RSMB_ECOBW RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|49259108|pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
gi|49259109|pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
gi|1772512|emb|CAA71359.1| sun [Escherichia coli str. K-12 substr. MG1655]
gi|2367212|gb|AAC76314.1| 16S rRNA m(5)C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. MG1655]
gi|85676753|dbj|BAE78003.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K12 substr. W3110]
gi|157068442|gb|ABV07697.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
HS]
gi|169753404|gb|ACA76103.1| sun protein [Escherichia coli ATCC 8739]
gi|169890644|gb|ACB04351.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli str.
K-12 substr. DH10B]
gi|188488402|gb|EDU63505.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
53638]
gi|194421046|gb|EDX37075.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
101-1]
gi|226838955|gb|EEH70978.1| ribosomal RNA small subunit methyltransferase B [Escherichia sp.
1_1_43]
gi|238859734|gb|ACR61732.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BW2952]
gi|242378815|emb|CAQ33607.1| 16S rRNA m[5]C967 methyltransferase [Escherichia coli BL21(DE3)]
gi|253322932|gb|ACT27534.1| sun protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975117|gb|ACT40788.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli B
str. REL606]
gi|253979273|gb|ACT44943.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
BL21(DE3)]
gi|260447693|gb|ACX38115.1| sun protein [Escherichia coli DH1]
gi|299881625|gb|EFI89836.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 196-1]
gi|300317770|gb|EFJ67554.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 175-1]
gi|300453816|gb|EFK17436.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 116-1]
gi|300460065|gb|EFK23558.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 187-1]
gi|301077735|gb|EFK92541.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 146-1]
gi|309703700|emb|CBJ03041.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
ETEC H10407]
gi|310334827|gb|EFQ01032.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
1827-70]
gi|315137864|dbj|BAJ45023.1| 16S rRNA methyltransferase B [Escherichia coli DH1]
gi|323934513|gb|EGB30921.1| ribosomal RNA small methyltransferase B [Escherichia coli E1520]
gi|323939290|gb|EGB35502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
E482]
gi|323959561|gb|EGB55214.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H489]
gi|323970092|gb|EGB65366.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA007]
gi|331036278|gb|EGI08504.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
H736]
gi|332345236|gb|AEE58570.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
UMNK88]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|315617091|gb|EFU97701.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
3431]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|82545651|ref|YP_409598.1| 16S rRNA methyltransferase B [Shigella boydii Sb227]
gi|123728324|sp|Q31VY8|RSMB_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|81247062|gb|ABB67770.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|320173933|gb|EFW49109.1| Ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae CDC 74-1112]
Length = 429
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
Length = 438
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 17/150 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A V+ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELVKHELKPADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 FF--YGDEPKFINAVLDKVSRKEEIKRSGC 164
F K +N +L + R+ ++ S
Sbjct: 107 FSKKNSGSYKLVNGILRALERQGKVLPSSD 136
>gi|325913038|ref|ZP_08175411.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
gi|325477718|gb|EGC80857.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 60-B]
Length = 437
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVQTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|224369793|ref|YP_002603957.1| RsmB [Desulfobacterium autotrophicum HRM2]
gi|223692510|gb|ACN15793.1| RsmB [Desulfobacterium autotrophicum HRM2]
Length = 455
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 13/148 (8%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ ++ +K + R A+ L + + + +I+ Y H
Sbjct: 3 EKRRPIKTEPIK-DPRFLALTILIENESSKFTLDKILERYSAQL----------ESLAHR 51
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D II+G + K+H+D LI+ +++ +C LR + + + +PV
Sbjct: 52 DRALANAIIYGTLRWKEHLDWLITPFSKR--PLDQIEPAICYTLRTALYQTVFMDKIPVS 109
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDK 152
++ V A F+NAVL K
Sbjct: 110 AAVNTAVNAAKKLSNTGAAGFVNAVLRK 137
>gi|308177752|ref|YP_003917158.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307745215|emb|CBT76187.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 507
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 12 LSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
R+ A RL A + L ++ G Y ++ E D +
Sbjct: 38 PGQRKRAADPARLVAFRTL--REVSGSDA---------YANLVLPKMIREYQLDRRDAGF 86
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +G + + D ++++ + S LD + LR G +L+ VP +
Sbjct: 87 ATELAYGALRGQGFYDAILATLVDR--DLSELDPAILDALRLGAHQLLAMR-VPKHAALD 143
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A INAVL +VS
Sbjct: 144 ETVSLARAQIGAGPSGLINAVLRRVS 169
>gi|253572755|ref|ZP_04850155.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298384353|ref|ZP_06993913.1| NusB family protein [Bacteroides sp. 1_1_14]
gi|251837655|gb|EES65746.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298262632|gb|EFI05496.1| NusB family protein [Bacteroides sp. 1_1_14]
Length = 308
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFEE-KNGANQELLPEFK-DDEDQEFARRLFRRTILNADYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|312871906|ref|ZP_07731988.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
gi|312873262|ref|ZP_07733318.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311091273|gb|EFQ49661.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2052A-d]
gi|311092483|gb|EFQ50845.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2062A-h1]
Length = 437
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
Length = 429
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|293412707|ref|ZP_06655375.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|301018854|ref|ZP_07183093.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
gi|291468354|gb|EFF10847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
B354]
gi|300399511|gb|EFJ83049.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 69-1]
Length = 429
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|259501638|ref|ZP_05744540.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|302191155|ref|ZP_07267409.1| SUN protein [Lactobacillus iners AB-1]
gi|312874589|ref|ZP_07734613.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325911750|ref|ZP_08174157.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
gi|259166923|gb|EEW51418.1| RNA methyltransferase Sun [Lactobacillus iners DSM 13335]
gi|311089819|gb|EFQ48239.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LEAF 2053A-b]
gi|325476516|gb|EGC79675.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners UPII 143-D]
Length = 437
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVQTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|167949504|ref|ZP_02536578.1| transcription antitermination protein NusB [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 182
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S +R AR AVQA+YQ + G I ++ E ++ +F+
Sbjct: 1 MSKKRSQARRHAVQAIYQWQMAGQDLAAIYEQFL-----------GEQDLSQFEVPYFKD 49
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
++HGV + Q +D L+ + +D + ++LR GV +
Sbjct: 50 LLHGVPNNLQELDGLLKP--ALDRAIESVDPVERAVLRLGVYD 90
>gi|325001359|ref|ZP_08122471.1| ribosomal RNA small subunit methyltransferase [Pseudonocardia sp.
P1]
Length = 280
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA L + E E Y A + D + +G +
Sbjct: 5 ARQAAYDLL-----------TAVREREAYANLALPGILRRYRLRDRDAALATELGYGTLR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I +C S+++ L LR G +L+ VP +S V +
Sbjct: 54 AQGLLDTVIDACTDR--PLSKIEHPLLDALRLGAYQLL-RTRVPAHAAVSTCVELVRGDH 110
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NAVL ++ +E + ++
Sbjct: 111 GSQSAGFVNAVLRRIGEHDEAEWLDRLAP 139
>gi|29349999|ref|NP_813502.1| putative nitrogen utilization substance protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|29341910|gb|AAO79696.1| putative nitrogen utilization substance protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 260
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + A+ EL E D E+ R + + + L+S
Sbjct: 128 EIVDTFVLKTIKRFEE-KNGANQELLPEFK-DDEDQEFARRLFRRTILNADYYRHLVSEN 185
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 186 -TKNWDLDRIAFMDIIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 244
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 245 DGIVNQLKKE 254
>gi|288803706|ref|ZP_06409135.1| NusB family protein [Prevotella melaninogenica D18]
gi|288333795|gb|EFC72241.1| NusB family protein [Prevotella melaninogenica D18]
Length = 297
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
AD EL E D ++ + + +S + W FSRL + I
Sbjct: 130 ANGADQELLPEYR-DEEDRDFALKLFRSTILNADDYQRYMSES-SRNWDFSRLAYMDVVI 187
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++ + E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 188 MQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 235
>gi|262340975|ref|YP_003283830.1| transcription antitermination factor NusB [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272312|gb|ACY40220.1| transcription antitermination factor NusB [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 300
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+ + + ++ + + K+ + LI+ + W+ R+ ++ IL+ + E +
Sbjct: 188 DIYKNNENKKFVIDLYRNTIFHKEEFNSLINDI-SNNWNIKRIAILDLIILQMAICEFLY 246
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++P + ++EY+ I F FIN +LD++ +
Sbjct: 247 FPNIPPKATMNEYIEITKIFCMEKSKIFINGILDQIFK 284
>gi|262191295|ref|ZP_06049489.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
gi|262032833|gb|EEY51377.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae CT
5369-93]
Length = 426
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|153830135|ref|ZP_01982802.1| sun protein [Vibrio cholerae 623-39]
gi|254225568|ref|ZP_04919177.1| sun protein [Vibrio cholerae V51]
gi|254291095|ref|ZP_04961892.1| sun protein [Vibrio cholerae AM-19226]
gi|125621888|gb|EAZ50213.1| sun protein [Vibrio cholerae V51]
gi|148874399|gb|EDL72534.1| sun protein [Vibrio cholerae 623-39]
gi|150422940|gb|EDN14890.1| sun protein [Vibrio cholerae AM-19226]
Length = 434
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|153212957|ref|ZP_01948551.1| sun protein [Vibrio cholerae 1587]
gi|153826427|ref|ZP_01979094.1| sun protein [Vibrio cholerae MZO-2]
gi|124116183|gb|EAY35003.1| sun protein [Vibrio cholerae 1587]
gi|149739813|gb|EDM54008.1| sun protein [Vibrio cholerae MZO-2]
Length = 434
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|229515917|ref|ZP_04405374.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
gi|229524946|ref|ZP_04414351.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|229338527|gb|EEO03544.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
bv. albensis VL426]
gi|229347017|gb|EEO11979.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
TMA 21]
Length = 426
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|60680691|ref|YP_210835.1| putative N utilization substance protein [Bacteroides fragilis NCTC
9343]
gi|60492125|emb|CAH06888.1| putative N utilization substance protein [Bacteroides fragilis NCTC
9343]
gi|301162218|emb|CBW21763.1| putative N utilization substance protein [Bacteroides fragilis
638R]
Length = 294
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 162 EIVDTFVLKTIKRFEE--KQGANQPLLPEFKDDEDQEFARRLFRRAILNADYYRHLISEN 219
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 220 -TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTL 278
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 279 DGIVNQLKKE 288
>gi|320199476|gb|EFW74066.1| Ribosomal RNA small subunit methyltransferase B [Escherichia coli
EC4100B]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|606223|gb|AAA58086.1| we have one ORF, ECFMT has fmu and fmv [Escherichia coli str. K-12
substr. MG1655]
Length = 386
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|187732355|ref|YP_001881972.1| 16S rRNA methyltransferase B [Shigella boydii CDC 3083-94]
gi|224493269|sp|B2U2Q6|RSMB_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|187429347|gb|ACD08621.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
CDC 3083-94]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
Length = 435
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNINSKEKAFITEIFYGVIRNKKFLDYIIERYTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S + I+ E + + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMDS-DNKGIVWEATELTKKKYGMTISKFINGTLRNYLRNKDTE 126
>gi|225874679|ref|YP_002756138.1| putative ribosomal RNA small subunit methyltransferase B
[Acidobacterium capsulatum ATCC 51196]
gi|225792848|gb|ACO32938.1| putative ribosomal RNA small subunit methyltransferase B
[Acidobacterium capsulatum ATCC 51196]
Length = 440
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L ++ + E++ + A D ++ G +
Sbjct: 5 ARRVAFDLLQRMATSDAHSDELLRTMKVNALAAQ------------DRNLVTTLVLGTLR 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D ++ LT RL + + LR G +L+ VP ++++ V +
Sbjct: 53 WQPALDQILLQFLTR--PDQRLSEPVRAALRLGAFQLLHLDRVPPHAVLNDSVELVKLSN 110
Query: 139 YGDEPKFINAVLDKV 153
+NAVL KV
Sbjct: 111 EAYATGLVNAVLRKV 125
>gi|323966250|gb|EGB61685.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M863]
gi|327250937|gb|EGE62630.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
STEC_7v]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|170684100|ref|YP_001745551.1| 16S rRNA methyltransferase B [Escherichia coli SMS-3-5]
gi|224493251|sp|B1LGP5|RSMB_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|170521818|gb|ACB19996.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
SMS-3-5]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|152994058|ref|YP_001338893.1| sun protein [Marinomonas sp. MWYL1]
gi|150834982|gb|ABR68958.1| sun protein [Marinomonas sp. MWYL1]
Length = 462
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 1 MTIQDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M ++ + AR A++ + I + S + ++ ++ +E
Sbjct: 1 MNHDNSFPSNTSQSSKSTGQQSARQVAIKVITNILLQQGSLSTQLA---RHQLDVASEHA 57
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ + GV + ++ + + F D L ++L G+ +L
Sbjct: 58 P----------MLKELCFGVCRQYPRLNSI--ALHLLAHPFEEKDTDLYAVLLLGLYQLT 105
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ P ++E V K +NAVL + R+ +
Sbjct: 106 YM-NTPDHAAVNETVEACRILNKDWATKLMNAVLRRYQREAD 146
>gi|17229252|ref|NP_485800.1| transcription antitermination protein NusB [Nostoc sp. PCC 7120]
gi|22095953|sp|Q8YW56|NUSB_ANASP RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|17130850|dbj|BAB73459.1| transcription termination factor [Nostoc sp. PCC 7120]
Length = 211
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 47 YRFCADTELDVESVYLHVDLE---WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ A E + D E + ++ + + + ID I+S L + W +RL I
Sbjct: 95 NQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALVD-WQVTRLAQI 153
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
ILR V E++ ++P V I+E V +A + + +FIN VL +VS +++
Sbjct: 154 DRDILRIAVAEMMFF-NLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKA 208
>gi|218550564|ref|YP_002384355.1| 16S rRNA methyltransferase B [Escherichia fergusonii ATCC 35469]
gi|254766861|sp|B7LRQ5|RSMB_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|218358105|emb|CAQ90752.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia
fergusonii ATCC 35469]
gi|324111967|gb|EGC05946.1| ribosomal RNA small subunit methyltransferase B [Escherichia
fergusonii B253]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|227549211|ref|ZP_03979260.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
lipophiloflavum DSM 44291]
gi|227078665|gb|EEI16628.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
lipophiloflavum DSM 44291]
Length = 480
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + ++++ ++ R D + + +G +
Sbjct: 42 AREAAFEVVHRVATDDAYANLVLPNLLRER-----------SITGRDAAFATELAYGTLR 90
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I+ C + + + + + LR G +L+ V + V +
Sbjct: 91 AQGVLDAVIARCSSRE--LGDIAPEVLAALRLGAYQLLYMR-VDDHAAVDTSVRLVEAAG 147
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
G F NA+L +SR + ++
Sbjct: 148 AGKAKGFANAILRTISRTPAQQWLDELTP 176
>gi|320655927|gb|EFX23847.1| 16S rRNA methyltransferase B [Escherichia coli O55:H7 str. 3256-97
TW 07815]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIIVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|290512100|ref|ZP_06551468.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
gi|289775890|gb|EFD83890.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp.
1_1_55]
Length = 431
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKNKINLRSLAAQAIEQVVEQGQSLSNVLPPLQQ-------------KVSDKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQEA 131
>gi|304440678|ref|ZP_07400562.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304370865|gb|EFM24487.1| ribosomal RNA small subunit methyltransferase B [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 425
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
+ ++ R I G + K ++D LI F ++ + IL + + I
Sbjct: 31 ELNKSRSENIALLRNITTGSLRNKTYLDYLIKKNSKI--RFKKIHEDIRIILEMSLYQYI 88
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+P I+ E V + + F+N +L R ++ +
Sbjct: 89 FLDGIPDYTIVDEAVKLTKKVSHKGSVGFVNGLLRNFMRTKDFE 132
>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 435
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLNVNSKEKAFITEIFYGVIRNKKFLDYIIEKNTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ S V + E +A + KFIN L R ++++
Sbjct: 73 NLLRISIYQITFMDSDDKGV-VWEGTELAKKKYGIPISKFINGTLRNYLRNKDLE 126
>gi|331649085|ref|ZP_08350171.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
gi|330909333|gb|EGH37847.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
AA86]
gi|331041583|gb|EGI13727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M605]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|218702051|ref|YP_002409680.1| 16S rRNA methyltransferase B [Escherichia coli IAI39]
gi|300935286|ref|ZP_07150297.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
gi|254766856|sp|B7NLK8|RSMB_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|218372037|emb|CAR19897.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Escherichia coli
IAI39]
gi|300459489|gb|EFK22982.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 21-1]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|227534879|ref|ZP_03964928.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227187635|gb|EEI67702.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 446
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 19/161 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AV+ L + G Y + D
Sbjct: 1 MTPNNP----RLLAVETL--SRVTGQGG---------YSNLTLDHVINSHKLTPRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++GV+ + +D ++ + + +LD + +L V +L VP + +
Sbjct: 46 TNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
IA + KF+ VL R + + +
Sbjct: 102 STEIAKKLGHQGIAKFVTGVLRNAQRTGFPDPAAIADPVKR 142
>gi|239631985|ref|ZP_04675016.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066670|ref|YP_003788693.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
Zhang]
gi|239526450|gb|EEQ65451.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439077|gb|ADK18843.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei str.
Zhang]
Length = 446
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 19/161 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AV+ L + G Y + D
Sbjct: 1 MTPNNP----RLLAVETL--SRVTGQGG---------YSNLTLDHVINSHKLTPRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++GV+ + +D ++ + + +LD + +L V +L VP + +
Sbjct: 46 TNIVYGVIQHQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
IA + KF+ VL R + + +
Sbjct: 102 STEIAKKLGHQGIAKFVTGVLRNAQRTGFPDPAAIADPVKR 142
>gi|323699391|ref|ZP_08111303.1| Fmu (Sun) domain protein [Desulfovibrio sp. ND132]
gi|323459323|gb|EGB15188.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans ND132]
Length = 424
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A++AL++ + + + V DL + +G +
Sbjct: 11 AARRVALEALFRCLMNRQDIQASLDAALS-----------SGVDDPRDLGLATELSYGYL 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K I+ ++S L + + + + E++ +P + V +
Sbjct: 60 RLKGRIEYVLSRFLKDPGKLNP---KMRLAMGVAAYEILFLDKIPAYASVDWAVEFSKSK 116
Query: 138 FYGDEPKFINAVLDKVS 154
NAVL +V+
Sbjct: 117 PGARLAGLFNAVLRRVA 133
>gi|333031441|ref|ZP_08459502.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
gi|332742038|gb|EGJ72520.1| NusB antitermination factor [Bacteroides coprosuis DSM 18011]
Length = 308
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +++ + L D E+ ++ ++ +++ LI
Sbjct: 176 EIVDTFIIKTIKKFKAEKGSDQPLLPEYKD--DEDQEFAVRLLRQAIENEEYYRSLIG-T 232
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ ++ +++ + E++ ++P+ V +EY+ +A + FIN L
Sbjct: 233 HTKNWELDRIALMDVVLMQCALAEVLSFPNIPLSVTFNEYLDLAKLYSTHKSGGFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DSIINQLKKE 302
>gi|319951926|ref|YP_004163193.1| nusb antitermination factor [Cellulophaga algicola DSM 14237]
gi|319420586|gb|ADV47695.1| NusB antitermination factor [Cellulophaga algicola DSM 14237]
Length = 315
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+E+ + ++ + + + + I T W R+ I +L+ + EL+ S
Sbjct: 206 KDQEDVEFSKRLLSKTLLQNEKLVKEI-EGKTPNWDKDRIADIDAILLKMAIAELLNFPS 264
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+P V I+EY+ +A ++ FIN +LDK+ ++ + +
Sbjct: 265 IPERVTINEYLELAKEYSTPKSSTFINGILDKLVKEYQQE 304
>gi|218441932|ref|YP_002380261.1| transcription antitermination protein NusB [Cyanothece sp. PCC
7424]
gi|254772630|sp|B7KFR8|NUSB_CYAP7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|218174660|gb|ACK73393.1| NusB antitermination factor [Cyanothece sp. PCC 7424]
Length = 212
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E+ II V R+ I+ +++ + + W +RL I ILR V E+I VP +V
Sbjct: 117 REYALEIIQTVYRRQTEIEQELATVMVD-WQLNRLPKIDRDILRIAVAEMIFLE-VPQKV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
I+E V IA + + +FIN VL +V+ + + +
Sbjct: 175 AINEAVEIAKRYSDEEGYRFINGVLRRVTERLKTE 209
>gi|158338705|ref|YP_001519882.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
gi|158308946|gb|ABW30563.1| ribosomal RNA small subunit methyltransferase B [Acaryochloris
marina MBIC11017]
Length = 443
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D +++G + R++ +D LI + + L ++L G+ +L
Sbjct: 32 KTIADADRRLLTELLYGSVRRQRTLDALIDQFAKK--PAHQQPPDLRTLLHLGLYQLRFL 89
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+P I V +A F+N +L + +R
Sbjct: 90 DHIPDAAAIFTTVELAKQNQLSGLSGFVNGLLRQYAR 126
>gi|253563478|ref|ZP_04840935.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265762654|ref|ZP_06091222.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|251947254|gb|EES87536.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263255262|gb|EEZ26608.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 308
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE--KQGANQPLLPEFKDDEDQEFARRLFRRAILNADYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|194435072|ref|ZP_03067310.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|194416679|gb|EDX32810.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 1012]
gi|320182714|gb|EFW57600.1| Ribosomal RNA small subunit methyltransferase B [Shigella boydii
ATCC 9905]
gi|332086286|gb|EGI91442.1| ribosomal RNA small subunit methyltransferase B [Shigella
dysenteriae 155-74]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQEE 131
>gi|153821915|ref|ZP_01974582.1| sun protein [Vibrio cholerae B33]
gi|254851609|ref|ZP_05240959.1| sun protein [Vibrio cholerae MO10]
gi|126520535|gb|EAZ77758.1| sun protein [Vibrio cholerae B33]
gi|254847314|gb|EET25728.1| sun protein [Vibrio cholerae MO10]
Length = 434
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|229508832|ref|ZP_04398323.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229517103|ref|ZP_04406549.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229606604|ref|YP_002877252.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255746774|ref|ZP_05420720.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
gi|229346166|gb|EEO11138.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC9]
gi|229354107|gb|EEO19039.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
B33]
gi|229369259|gb|ACQ59682.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MJ-1236]
gi|255735531|gb|EET90930.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholera
CIRS 101]
Length = 426
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|229508329|ref|ZP_04397833.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262155855|ref|ZP_06028977.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
gi|262166898|ref|ZP_06034619.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|229354602|gb|EEO19524.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae BX
330286]
gi|262024669|gb|EEY43349.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
RC27]
gi|262030307|gb|EEY48949.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
INDRE 91/1]
Length = 426
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|53712491|ref|YP_098483.1| putative nitrogen utilization substance protein [Bacteroides
fragilis YCH46]
gi|52215356|dbj|BAD47949.1| putative nitrogen utilization substance protein [Bacteroides
fragilis YCH46]
Length = 258
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 126 EIVDTFVLKTIKRFEE--KQGANQPLLPEFKDDEDQEFARRLFRRAILNADYYRHLISEN 183
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 184 -TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTL 242
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 243 DGIVNQLKKE 252
>gi|15640076|ref|NP_229703.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587275|ref|ZP_01677048.1| sun protein [Vibrio cholerae 2740-80]
gi|121727862|ref|ZP_01680921.1| sun protein [Vibrio cholerae V52]
gi|147675284|ref|YP_001218368.1| sun protein [Vibrio cholerae O395]
gi|153817606|ref|ZP_01970273.1| sun protein [Vibrio cholerae NCTC 8457]
gi|227080281|ref|YP_002808832.1| sun protein [Vibrio cholerae M66-2]
gi|298501227|ref|ZP_07011026.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
gi|46397040|sp|Q9KVU5|RSMB_VIBCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|9654437|gb|AAF93222.1| sun protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121548521|gb|EAX58577.1| sun protein [Vibrio cholerae 2740-80]
gi|121629806|gb|EAX62221.1| sun protein [Vibrio cholerae V52]
gi|126511874|gb|EAZ74468.1| sun protein [Vibrio cholerae NCTC 8457]
gi|146317167|gb|ABQ21706.1| sun protein [Vibrio cholerae O395]
gi|227008169|gb|ACP04381.1| sun protein [Vibrio cholerae M66-2]
gi|227011953|gb|ACP08163.1| sun protein [Vibrio cholerae O395]
gi|297540099|gb|EFH76161.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
MAK 757]
Length = 434
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 12 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + ++ G+ +L +P + E V A D
Sbjct: 59 LPRLESI--SQALMGKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLKG 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 116 PRLRGLINAVLRNYQRDQE 134
>gi|26249873|ref|NP_755913.1| 16S rRNA methyltransferase B [Escherichia coli CFT073]
gi|227883420|ref|ZP_04001225.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300979825|ref|ZP_07174727.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|301046059|ref|ZP_07193238.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|46396925|sp|Q8FD12|RSMB_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|26110301|gb|AAN82487.1|AE016767_247 SUN protein [Escherichia coli CFT073]
gi|227839564|gb|EEJ50030.1| 16S rRNA methyltransferase B [Escherichia coli 83972]
gi|300301944|gb|EFJ58329.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 185-1]
gi|300409431|gb|EFJ92969.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 45-1]
gi|307555376|gb|ADN48151.1| 16S rRNA m5C967 methyltransferase [Escherichia coli ABU 83972]
gi|315292336|gb|EFU51688.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MS 153-1]
Length = 429
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAIEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQSDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQDE 131
>gi|118617418|ref|YP_905750.1| Fmu protein [Mycobacterium ulcerans Agy99]
gi|118569528|gb|ABL04279.1| Fmu protein [Mycobacterium ulcerans Agy99]
Length = 457
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 22/164 (13%)
Query: 12 LSHRRG--------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ ++R AR AA AL + ++ R
Sbjct: 1 MPNQRRGPRRRPLDPARGAAFNALRAVSERNAYANLVLPALLRER-----------GITG 49
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + +G + +D +I + S +D L +LR G +L+ V
Sbjct: 50 RDAALATELTYGACRARGLLDAIIGA--AAGRSPEAIDPFLLDLLRLGAYQLL-RTRVDA 106
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+S V A F F+NAVL ++ ++E ++
Sbjct: 107 HAAVSTTVEQAGIEFDSARAGFVNAVLRTIADRDEQSWVQELAP 150
>gi|312863023|ref|ZP_07723261.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
vestibularis F0396]
gi|311100559|gb|EFQ58764.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
vestibularis F0396]
Length = 442
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G Y A +S D I++G
Sbjct: 8 KKTARGQALEVLEEVFQEG-----------AYSNIALNAHLSKSYLTDKDKALVTEIVYG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 57 TVARKITLEWILAHVIEDRDKLEPWVYDLLL---LSLYQLAYLDKIPAHAVVNDAVSIAK 113
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 114 NRGNKKGAEKLVNAVLRKLS 133
>gi|161507739|ref|YP_001577700.1| transcription termination [Lactobacillus helveticus DPC 4571]
gi|160348728|gb|ABX27402.1| transcription termination [Lactobacillus helveticus DPC 4571]
Length = 130
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + + E V ++ L + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLSAEDVEA--------KVVATLNLKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + +
Sbjct: 53 LENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDKIDPKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 113 FAEPKEKPFINGMLANFV 130
>gi|113460188|ref|YP_718245.1| ribosomal RNA small subunit methyltransferase B [Haemophilus somnus
129PT]
gi|112822231|gb|ABI24320.1| 16S rRNA m(5)C-967 methyltransferase [Haemophilus somnus 129PT]
Length = 462
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 1 MTIQDNKKDLKLSH------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M+ + K + R R+ A + + Q+ + G S + ++
Sbjct: 1 MSKSQHNKTKRAVKSTALFTPRS-VRVLAAEVILQVLVQGKSLSTLLP------------ 47
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ +S D + I G+ ++ +I L + I+ +L G+ +
Sbjct: 48 -EQQSAVKPQDFPLLQEICFGICRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQ 104
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++ +P + E V +NAVL + R++E
Sbjct: 105 ILYTR-IPAHAAVDEVVSATKSLKSDSFRGLLNAVLRRFLREQE 147
>gi|78778810|ref|YP_396922.1| sun protein [Prochlorococcus marinus str. MIT 9312]
gi|78712309|gb|ABB49486.1| sun protein [Prochlorococcus marinus str. MIT 9312]
Length = 438
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 55/141 (39%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + L ++ S + Y+F +D+ + + G +
Sbjct: 8 RKAAWEILLKVSHGDFSDHALEKVLRNYQF------------NPLDIAFITELSFGCIRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + + T K + + L +L G+ +L++ +P IS V +A
Sbjct: 56 RKFLD--LWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDL 113
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
+NA+L SRK E K
Sbjct: 114 NGLAGTVNAILRNASRKLEQK 134
>gi|113968373|ref|YP_732166.1| sun protein [Shewanella sp. MR-4]
gi|113883057|gb|ABI37109.1| sun protein [Shewanella sp. MR-4]
Length = 429
Score = 67.5 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + E + + D + +GVM
Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ ++ CL + I+ +L G +L +P ISE +
Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 109
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQL 127
>gi|312882737|ref|ZP_07742472.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369595|gb|EFP97112.1| ribosomal RNA small subunit methyltransferase B [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 426
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + ++ D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSNALP-------------AAQTTIKPRDYALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + ++ G+ +L +P + E V
Sbjct: 51 LPRLES--TANQLMDKPLKGKQRVFHHLILVGLYQLSFMR-IPAHAAVGETVEATKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + VS
Sbjct: 108 PRLRGLINAVLRNYQRNQEQLDAQAVS 134
>gi|228473251|ref|ZP_04058006.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
gi|228275401|gb|EEK14193.1| NusB family protein [Capnocytophaga gingivalis ATCC 33624]
Length = 310
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
I+ + + D ++ ++ + + + T KW R
Sbjct: 180 IVKILKGLSEGGVADFLPPLFKDKSDKDFAIELLRKAVLNDEAFHKYLVEK-TPKWDADR 238
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ + +++ G+ E ++ S+PV+V ++EYV IA ++ F+N +LD +S+ +
Sbjct: 239 IAELDAIMIKMGIAEFLKFPSIPVKVTLNEYVEIAKEYSTPKSSVFVNGILDTLSKDFQQ 298
Query: 160 K 160
+
Sbjct: 299 E 299
>gi|110638835|ref|YP_679044.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
gi|110281516|gb|ABG59702.1| antitermination factor [Cytophaga hutchinsonii ATCC 33406]
Length = 389
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
EL S D E+ + + LI+ + W RL IL+
Sbjct: 266 DEMYELPSLSPNWEDDQEFMLELYKESTAFDDAAEKLITDK-VQNWDIERLAFTDRIILK 324
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ E+++ ++PV+V I+EY+ ++ + +F+N +LD +S ++++SG +
Sbjct: 325 MALTEMVKFPNIPVKVTINEYIELSKSYSTPKSKQFVNGLLDTIS--IDLQKSGLI 378
>gi|114045538|ref|YP_736088.1| sun protein [Shewanella sp. MR-7]
gi|113886980|gb|ABI41031.1| sun protein [Shewanella sp. MR-7]
Length = 429
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + E + + D + +GVM
Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ ++ CL + I+ +L G +L +P ISE +
Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 109
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQL 127
>gi|170718224|ref|YP_001785246.1| sun protein [Haemophilus somnus 2336]
gi|168826353|gb|ACA31724.1| sun protein [Haemophilus somnus 2336]
Length = 462
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 23/164 (14%)
Query: 1 MTIQDNKKDLKLSH------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M+ + K + R R+ A + + Q+ + G S + ++
Sbjct: 1 MSKSQHNKTKRAVKSTALFTPRS-VRVLAAEVILQVLVQGKSLSTLLP------------ 47
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ +S D + I G+ ++ +I L + I+ +L G+ +
Sbjct: 48 -EQQSAVKPQDFPLLQEICFGICRVLPRLERIIQLLLDK--PLKGKTRIVHCLLLVGLYQ 104
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++ +P + E V +NAVL + R++E
Sbjct: 105 ILYTR-IPAHAAVDEVVSATKSLKSDSFRGLLNAVLRRFLREQE 147
>gi|322516391|ref|ZP_08069316.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
gi|322125124|gb|EFX96517.1| RNA methyltransferase Sun [Streptococcus vestibularis ATCC 49124]
Length = 442
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G Y A +S D I++G
Sbjct: 8 KKTARGQALEVLEEVFQEG-----------AYSNIALNAHLSKSYLTDKDKALVTEIVYG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 57 TVARKITLEWILAHVIEDRDKLEPWVYDLLL---LSLYQLAYLDKIPAHAVVNDAVSIAK 113
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 114 NRGNKKGAEKLVNAVLRKLS 133
>gi|309803103|ref|ZP_07697200.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315653701|ref|ZP_07906621.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
gi|308164611|gb|EFO66861.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
iners LactinV 11V1-d]
gi|315489063|gb|EFU78705.1| RNA methyltransferase Sun [Lactobacillus iners ATCC 55195]
Length = 437
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L I + ++Y A +S +D I++G +
Sbjct: 4 NARSVALDTL-----------LKIFKQKSYSNIALNNALEKSQLSPIDKALTTQIVYGTV 52
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + S + K + L +L + +P I+ E +A +
Sbjct: 53 QYKLYLEYQLKSLVQTKLK----EDYLWPLLLMSAYQYFFLDKIPTASIVDEANKLAKSY 108
Query: 138 FYGD--EPKFINAVLDKVSRKEEI 159
+ +N +L + R+ EI
Sbjct: 109 SPKGSQSYRLVNGILRSLVRRGEI 132
>gi|302035777|ref|YP_003796099.1| ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
gi|300603841|emb|CBK40173.1| Ribosomal RNA small subunit methyltransferase B [Candidatus
Nitrospira defluvii]
Length = 449
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
++ D + ++ GV+ + +D + ++L ++ +ILR G
Sbjct: 19 DQVSSREALDLRDRAFMVELVRGVLRYRATLDWRLGLLSDR--RITKLPTLVQTILRLGA 76
Query: 113 LELIECHSVPVEVIISEYVCIAH---DFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+L+ VP ++E V + D F+NAVL + R E S
Sbjct: 77 YQLLYLDRVPDSAAVNESVQMTKQQSRRLGRDWSGFVNAVLRALLRSPEPAWPDAGS 133
>gi|295132726|ref|YP_003583402.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
gi|294980741|gb|ADF51206.1| antitermination protein NusB [Zunongwangia profunda SM-A87]
Length = 303
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D E+ + + + + T W R+ I +L+ + E +E S+PV+
Sbjct: 198 DKEFAVNLFRKTYLKDGKLSNEM-QGKTPNWDKDRIAEIDTVLLKMAICEFLEFPSIPVK 256
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V I+EY+ I+ ++ FIN +LDK+S++ +
Sbjct: 257 VTINEYLEISKEYSTPKSSIFINGILDKLSKEYKT 291
>gi|302345746|ref|YP_003814099.1| transcription antitermination factor NusB [Prevotella
melaninogenica ATCC 25845]
gi|302149617|gb|ADK95879.1| transcription antitermination factor NusB [Prevotella
melaninogenica ATCC 25845]
Length = 333
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
AD EL E D ++ + + +S + W FSRL + I
Sbjct: 166 ANGADQELLPEYR-DEEDRDFALKLFRSTILNADDYQRYMSES-SRNWDFSRLAYMDVVI 223
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++ + E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 224 MQIAIAEMLTFPNIPVTVTINEYVDLAKLYSTPRSGGYINGMLDTIAR 271
>gi|320666401|gb|EFX33384.1| 16S rRNA methyltransferase B [Escherichia coli O157:H7 str. LSU-61]
Length = 429
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A Q + Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQVVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKSMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|313896544|ref|ZP_07830093.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312974729|gb|EFR40195.1| transcription antitermination factor NusB [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 121
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
DL + + ++ G ID I+ ++W R+ + +++R E+
Sbjct: 22 EGLKEKDLPYAQGLVRGTRAALGEIDAAIARS-AKEWKLERMPGVDRNLIRMAFYEMYYQ 80
Query: 119 HSV-PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+E V +A + D +++N +L + +
Sbjct: 81 EERIDPGTAINEAVELAKKYGAEDAGRYVNGILSAMQK 118
>gi|110807136|ref|YP_690656.1| 16S rRNA methyltransferase B [Shigella flexneri 5 str. 8401]
gi|110616684|gb|ABF05351.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
Length = 436
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 8 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 54 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 110
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 111 EGAIAIKRPQLKGLINGVLRQFQRRQEE 138
>gi|255007968|ref|ZP_05280094.1| putative N utilization substance protein [Bacteroides fragilis
3_1_12]
gi|313145684|ref|ZP_07807877.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134451|gb|EFR51811.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 308
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I +E + + D E+ R + + + LIS
Sbjct: 176 EIVDTFVLKTIKRFEE--KQGANQPLLPEFKDDEDQEFARRLFRRAILNADYYRHLISEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRVAFMDVIIMQCALAEILSFPNIPVSVSLNEYVEIAKLYSTVKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|224493306|sp|Q0T014|RSMB_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
Length = 429
Score = 67.1 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQEE 131
>gi|224500053|ref|ZP_03668402.1| hypothetical protein LmonF1_10399 [Listeria monocytogenes Finland
1988]
Length = 399
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G RK +D ++ L D + ++LR V +L VP I++
Sbjct: 1 MTELVYGTTQRKITLDYYLAPFLN-----KEPDNWVKNLLRMSVYQLTYLDKVPEHAILN 55
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E IA + + KF+N VL V RK
Sbjct: 56 EAGDIAKNMGHQGVTKFVNGVLRNVIRK 83
>gi|117918492|ref|YP_867684.1| sun protein [Shewanella sp. ANA-3]
gi|117610824|gb|ABK46278.1| sun protein [Shewanella sp. ANA-3]
Length = 429
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++++ G S + + E + + D + +GVM
Sbjct: 5 RALAAKAIFEVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ ++ CL + I+ +L G +L +P ISE +
Sbjct: 53 LPQIEKRVAECLAK--PLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 109
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 110 EGMVKVVNGVLRNIQRQL 127
>gi|222099955|ref|YP_002534523.1| Sun protein [Thermotoga neapolitana DSM 4359]
gi|221572345|gb|ACM23157.1| Sun protein [Thermotoga neapolitana DSM 4359]
Length = 431
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R RL A + L + + + + V SV D + + ++ G
Sbjct: 2 RTNVRLLAYRLLRKYE-------------KEKFLDREDVDSVLSVLNDRDRRFLKELVWG 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
VM +++ +D I+ L + + LR GV +L+ VP +SE V +
Sbjct: 49 VMRKEELLDWYINQLLRNPD----IPPAVRVALRMGVYQLLFMDGVPDYAAVSETVKLVK 104
Query: 136 DFFYGDEPKFINAVLDKV 153
+ K +NAVL +V
Sbjct: 105 ---NENFKKLVNAVLRRV 119
>gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 434
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A ++ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELIKHDLKPADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 FF--YGDEPKFINAVLDKVSRKEEIKRS 162
+ K IN +L + R+ EI
Sbjct: 107 YSKRNSGSYKLINGILRALERQGEILPP 134
>gi|256379230|ref|YP_003102890.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
gi|255923533|gb|ACU39044.1| Fmu (Sun) domain protein [Actinosynnema mirum DSM 43827]
Length = 478
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ L + ++ R D + +G
Sbjct: 37 ARRAALDTLRAVTKRDAYANLVLPGLLRER-----------RITGRDAALATELTYGTAR 85
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D ++++C + +D + LR G +L+ VP ++ V +
Sbjct: 86 ARGLLDAVLAACSDR--PLAEIDDAVLDALRLGAYQLL-RTRVPAHAAVASTVDLVRADR 142
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NAVL +V+ ++E V+ +
Sbjct: 143 GSGAAGFANAVLRRVTGQDEAGWIDEVAPDEE 174
>gi|312876959|ref|ZP_07736934.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
gi|311796274|gb|EFR12628.1| sun protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 406
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
E + + D F ++HGV+ K ID I+ + D + +ILR
Sbjct: 2 EKFHQKLKNEKDRALFVELVHGVLRYKNLIDYYINFVAKKGVK----DRRILNILRVATY 57
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ +P +SE IA F+NA+L + R +
Sbjct: 58 ELLFLEKIPEYATVSEACEIASKIS-PHLKAFVNAILRNIIRNKNQIE 104
>gi|281602657|gb|ADA75641.1| Ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2002017]
Length = 436
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 8 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 54 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 110
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 111 EGAIAIKRPQLKGLINGVLRQFQRRQEE 138
>gi|157148863|ref|YP_001456182.1| 16S rRNA methyltransferase B [Citrobacter koseri ATCC BAA-895]
gi|224493244|sp|A8AQI3|RSMB_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|157086068|gb|ABV15746.1| hypothetical protein CKO_04701 [Citrobacter koseri ATCC BAA-895]
Length = 428
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 2 KKQNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVSDKDKALLQELCF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ++ LI+ ++ + + + ++ G +L+ +P ++E V A
Sbjct: 49 GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 106 VAIKRPQLKGLINGVLRQFQRQQEA 130
>gi|30064610|ref|NP_838781.1| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 2457T]
gi|56480310|ref|NP_709076.2| 16S rRNA methyltransferase B [Shigella flexneri 2a str. 301]
gi|46396790|sp|Q7UBD3|RSMB_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|30042869|gb|AAP18592.1| hypothetical protein S3545 [Shigella flexneri 2a str. 2457T]
gi|56383861|gb|AAN44783.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|313648789|gb|EFS13229.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2a str. 2457T]
gi|332749603|gb|EGJ80020.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-671]
gi|332749746|gb|EGJ80161.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
4343-70]
gi|332766528|gb|EGJ96735.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2930-71]
gi|332998314|gb|EGK17914.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-218]
gi|333012367|gb|EGK31748.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-304]
Length = 429
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQEE 131
>gi|325279484|ref|YP_004252026.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
gi|324311293|gb|ADY31846.1| NusB antitermination factor [Odoribacter splanchnicus DSM 20712]
Length = 320
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 1/110 (0%)
Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
+ + + ++ D E+ R ++ +I T W R+
Sbjct: 187 WHLQEKMREEDDILYPIYKKDEDFEYARTLMRKAFYEYNANMEIIDKF-TYNWELDRISE 245
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
+ I+ + EL S+PV+V + EY+ I+ + FIN VLDK
Sbjct: 246 MDKLIMSCAISELKHFPSIPVKVTLDEYIEISKTYSSPKSGAFINGVLDK 295
>gi|256851330|ref|ZP_05556719.1| transcription antitermination factor NusB [Lactobacillus jensenii
27-2-CHN]
gi|260660754|ref|ZP_05861669.1| transcription antitermination factor NusB [Lactobacillus jensenii
115-3-CHN]
gi|282933225|ref|ZP_06338612.1| transcription antitermination factor NusB [Lactobacillus jensenii
208-1]
gi|297206200|ref|ZP_06923595.1| transcription antitermination factor NusB [Lactobacillus jensenii
JV-V16]
gi|256616392|gb|EEU21580.1| transcription antitermination factor NusB [Lactobacillus jensenii
27-2-CHN]
gi|260548476|gb|EEX24451.1| transcription antitermination factor NusB [Lactobacillus jensenii
115-3-CHN]
gi|281302729|gb|EFA94944.1| transcription antitermination factor NusB [Lactobacillus jensenii
208-1]
gi|297149326|gb|EFH29624.1| transcription antitermination factor NusB [Lactobacillus jensenii
JV-V16]
Length = 133
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA++ + I + ET +S+ L V + II GV
Sbjct: 4 HDSRRIAMQAIF---LANGEPDLTIEQVET--------KVAKSLDLKVIPAYAHEIIAGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +K I+ IS L + W R++ I +I+ + E+ + ++ ++E + + +
Sbjct: 53 LAKKSEIEADISKYLRKGWRLERVNRISVAIIEVAIFEISQSDAISAPAAVNEALILCEE 112
Query: 137 FFYGDEPKFINAVLDKV 153
F FIN +L
Sbjct: 113 FDDPKSKSFINGILANF 129
>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
Length = 438
Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A ++ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELIKHDLKPADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 FF--YGDEPKFINAVLDKVSRKEEIKRS 162
+ K IN +L + R+ EI
Sbjct: 107 YSKRNSGSYKLINGILRALERQGEILPP 134
>gi|268593572|ref|ZP_06127793.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
gi|291310849|gb|EFE51302.1| ribosomal RNA small subunit methyltransferase B [Providencia
rettgeri DSM 1131]
Length = 427
Score = 67.1 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A A++Q+ G S + ++ + + D + I GV+
Sbjct: 8 RSIAATAIFQVLDNGQSLSTVLPDLQRNIN-------------DKDKALLQEICFGVLRY 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ IS + + + L ++ G+ +L+ +P ++E V A
Sbjct: 55 LPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYTR-IPPHAALAETVDGAVALKK 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL R++
Sbjct: 112 PQLKGLINGVLRSFQRQQ 129
>gi|261366965|ref|ZP_05979848.1| transcription antitermination factor NusB [Subdoligranulum
variabile DSM 15176]
gi|282571083|gb|EFB76618.1| transcription antitermination factor NusB [Subdoligranulum
variabile DSM 15176]
Length = 138
Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ R ++ + D + +D LI+ L W+ +R+ + LR G+ E++ V
Sbjct: 41 AFARQLLAAMNDHSEELDALIAGHLKG-WTLNRVPRVSLVALRLGLAEMLYGEEQKPGVA 99
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
I+E V + + ++ +F+N +L V+R+ E
Sbjct: 100 INEAVELVKKYGADNDYQFVNGLLGTVAREREEHPEA 136
>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
Length = 429
Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ +T + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMTRPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|262040752|ref|ZP_06013983.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041896|gb|EEW42936.1| RNA methyltransferase Sun [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 431
Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 8 RSLAAQAIEQVIEKGQSLSNVLPPLQQ-------------KVSDKDKALLQELCFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ LIS + + + + ++ G+ +L+ +P ++E V A
Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131
>gi|313673615|ref|YP_004051726.1| nusb antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
gi|312940371|gb|ADR19563.1| NusB antitermination factor [Calditerrivibrio nitroreducens DSM
19672]
Length = 141
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 14/143 (9%)
Query: 12 LSHRR-GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ +R R A+ Y G I+ Y L L
Sbjct: 1 MGGKRLTKIRKYALNLYYMHLQNGELLETIVDSLVKYNGFNKEILLESLGLLKK------ 54
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++ +D LIS L + W +RL M+ ILR + EL S +I +Y
Sbjct: 55 -----AIEKTVFLDELISKYLKQGWDLNRLPMVDLLILRLAIFEL--FESNDPIKVIDDY 107
Query: 131 VCIAHDFFYGDEPKFINAVLDKV 153
V +A+ + + P +IN +L+K+
Sbjct: 108 VTLANKYSEQNSPGYINGILEKI 130
>gi|306832887|ref|ZP_07466020.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
bovis ATCC 700338]
gi|304424962|gb|EFM28095.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
bovis ATCC 700338]
Length = 440
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L E + E Y A + + D I++G
Sbjct: 6 KNQARGLALLVL-----------ENVFEDGAYSNIALNQELSHTTLSPKDKPLVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ L + +L+ +P ++++ V IA
Sbjct: 55 TVARKITLEWYLAHYIKDRDKLDFWVYYLLM---LSLYQLLYLDKIPAHAVVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ KF+NAVL + + +E
Sbjct: 112 NRGNKKGAEKFVNAVLRRFTEEE 134
>gi|220909702|ref|YP_002485013.1| transcription antitermination protein NusB [Cyanothece sp. PCC
7425]
gi|254772629|sp|B8HYJ8|NUSB_CYAP4 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|219866313|gb|ACL46652.1| NusB antitermination factor [Cyanothece sp. PCC 7425]
Length = 209
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 7/165 (4%)
Query: 4 QDNKKDLKLSHRRGIARLAA--VQAL-YQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
QD + + +RG RL A +QA+ Q + ++E R +L
Sbjct: 46 QDALETAAMELKRGRDRLLASEIQAVDVQSSRAMVTEAITLAETAVNRLGMVLDLPEFVQ 105
Query: 61 YLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ ++ I+ V+ + ID L+ W F+RL I +ILR V E++
Sbjct: 106 LANQQQVRDFSLDILKQVLTHRTAIDHLL-ETALVDWQFNRLAQIDRNILRIAVAEILYL 164
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P +V I+E V +A + D +F+N VL + E + G
Sbjct: 165 K-TPTQVTINEAVELAKRYSDEDGYRFVNGVLRRTIPHLEAQAQG 208
>gi|229530170|ref|ZP_04419559.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|229332303|gb|EEN97790.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
12129(1)]
gi|327482955|gb|AEA77362.1| Ribosomal RNA small subunit methyltransferase B [Vibrio cholerae
LMA3894-4]
Length = 426
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V A D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGAQDLQG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|222529034|ref|YP_002572916.1| Fmu (Sun) domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222455881|gb|ACM60143.1| Fmu (Sun) domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 406
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
E + + D F ++HGV+ K ID I+ + R + +ILR
Sbjct: 2 EKFHQKLKNEKDRALFVELVHGVLRYKSLIDYYINFVAKKGVKDKR----ILNILRVATY 57
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ +P ++E +A F+NA+L + R +
Sbjct: 58 ELLFLEKIPEYATVNEACEVASKI-NPHLKAFVNAILRNIIRNKNQIE 104
>gi|118602253|ref|YP_903468.1| sun protein [Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567192|gb|ABL01997.1| 16S rRNA m(5)C-967 methyltransferase [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 421
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++A+Y + I S + + D + ++ G +
Sbjct: 7 RFIALEAIYSVIINKKSLSAF------------------NYPKDNDTPLIKSLVFGTIRF 48
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++S L SF + D+ + ++ G +L+ + + I E V + +
Sbjct: 49 YHQLNDIVSKRLK--HSFKKEDLDVHCLMLLGAYQLLYSK-IAIHASIFETVNVVNALNK 105
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+NA+L K+ R ++I
Sbjct: 106 PWAKALVNAILRKIDRDKKI 125
>gi|283788076|ref|YP_003367941.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
gi|282951530|emb|CBG91229.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
rodentium ICC168]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MNKKLNLRSIAAQAVEQVVEQGHSLSNVLPPLQQ-------------KVSDKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI ++ + + L ++ G +L+ +P ++E V
Sbjct: 48 CFGVLRTLSQLEWLIGKLMSRPMTGKQ--RTLHYLIMVGFYQLLYTR-IPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R ++
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRNQDA 131
>gi|323466274|gb|ADX69961.1| Transcriptional termination factor [Lactobacillus helveticus H10]
Length = 150
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+ + ++ ++ +R A+QA+Y + + E V ++ L
Sbjct: 14 RRMNREIMNQ-HESRKVAMQAVY---LANQEPDLSAEDVEA--------KVVATLNLKQL 61
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ + +I GV++ ++ + +++ L + W R+ I+ +I+ + E+ + +
Sbjct: 62 SAYSKKLIEGVLENREDLQSELTNHLKKGWHLERVSQIVVAIMEVALFEIKNSDEIDPKA 121
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++E + + +F E FIN +L
Sbjct: 122 AVNEALNLCDEFAEPKEKPFINGMLANFV 150
>gi|188994695|ref|YP_001928947.1| probable nitrogen utilization substance protein [Porphyromonas
gingivalis ATCC 33277]
gi|188594375|dbj|BAG33350.1| probable nitrogen utilization substance protein [Porphyromonas
gingivalis ATCC 33277]
Length = 348
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 5/146 (3%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRF-----CADTELDVESVYLHVDLEWFRVIIH 74
R A YQ + EI+ E+ D + Y D F +
Sbjct: 198 RQAVADGNYQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLL 257
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
I W R+ + I++ + EL+ ++PV V I+EY+ ++
Sbjct: 258 RNAIINGQEYRHIIRENLINWEVDRIADMDMLIMQLAITELLHFPNIPVLVTINEYIDLS 317
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
F F+N +LD V + K
Sbjct: 318 KLFSTPKSGTFVNGLLDAVVKSLREK 343
>gi|194443414|ref|YP_002042660.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|224493264|sp|B4SUR0|RSMB_SALNS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|194402077|gb|ACF62299.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQET 131
>gi|168239759|ref|ZP_02664817.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194736151|ref|YP_002116352.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|224493267|sp|B4TXB2|RSMB_SALSV RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|194711653|gb|ACF90874.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197287575|gb|EDY26967.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQET 131
>gi|168234465|ref|ZP_02659523.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194470953|ref|ZP_03076937.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194457317|gb|EDX46156.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205331616|gb|EDZ18380.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQET 131
>gi|297517906|ref|ZP_06936292.1| 16S rRNA methyltransferase B [Escherichia coli OP50]
Length = 259
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|68171632|ref|ZP_00544999.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
str. Sapulpa]
gi|88658441|ref|YP_507582.1| putative N utilization substance protein B [Ehrlichia chaffeensis
str. Arkansas]
gi|67998953|gb|EAM85637.1| N utilization substance protein B, putative [Ehrlichia chaffeensis
str. Sapulpa]
gi|88599898|gb|ABD45367.1| putative N utilization substance protein B [Ehrlichia chaffeensis
str. Arkansas]
Length = 174
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R A+Q Y + + +I E+ + +D +
Sbjct: 11 WHSKKTTTRFLAIQGTYSMIFNNYTINDI-----DNLIDYLYEMKEVLDLIQIDNQLLLK 65
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++ ++ I+ I++ L EKWS R+++I SI++ V ELI +II+EYV
Sbjct: 66 IMNTMLLTFNTINSTIATFLNEKWSIDRINLISLSIIKTAVCELICSD-TDAVIIINEYV 124
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
IA + FINA+L++V
Sbjct: 125 NIASHILERTDVNFINAILNQV 146
>gi|126695788|ref|YP_001090674.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
gi|126542831|gb|ABO17073.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9301]
Length = 438
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + L ++ S + + Y+F +D+ + + G +
Sbjct: 8 RKAAWEILLKVSSGDFSDHALEKVLKNYQF------------NPLDIAFITELSFGCIRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + + T K + + L +L G+ +L++ +P IS V +A
Sbjct: 56 RKFLD--LWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDL 113
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
+NA+L SRK E K
Sbjct: 114 NGLAGTVNAILRNASRKLEQK 134
>gi|294506884|ref|YP_003570942.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
gi|294343212|emb|CBH23990.1| Ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
M8]
Length = 448
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 6/126 (4%)
Query: 36 STTEIISEYETYRFCADTELDVESVYLHVD---LEWFRVIIHGVMDRKQHIDLLISSCLT 92
S + + R D + D R ++ GV +++ +D ++
Sbjct: 9 SPARVHALDHLERVRKDDAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGE--A 66
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
+ ++ L ILR G+ EL+ S P + EYV +A +N VL
Sbjct: 67 YHGDYDSMEHRLQEILRLGLYELLF-QSTPTHAAVDEYVELAKQALRPGAGNLVNGVLRT 125
Query: 153 VSRKEE 158
+ R E
Sbjct: 126 IDRDRE 131
>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 438
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 12 KKQNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVSDKDKALLQELCF 58
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ++ LI+ ++ + + + ++ G +L+ +P ++E V A
Sbjct: 59 GVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGA 115
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 116 VAIKRPQLKGLINGVLRQFQRQQEE 140
>gi|268316481|ref|YP_003290200.1| sun protein [Rhodothermus marinus DSM 4252]
gi|262334015|gb|ACY47812.1| sun protein [Rhodothermus marinus DSM 4252]
Length = 453
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV+ L E I + Y + + + + GV
Sbjct: 14 ARREAVRLL-----------ERIENDQAYVNRLMSAGLTDELEPEAGRR-ATEYVAGVTR 61
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
++ +D L++ ++ ++ L ILR G+ EL+ + P + +E V +A
Sbjct: 62 WRRWLDFLLAQNYRGRY--DSMEPRLRQILRLGLYELLFTDTPPYAAL-NEAVELARRLV 118
Query: 139 YGDEPKFINAVLDKVSRKEE 158
+NAVL + R+ +
Sbjct: 119 RPQAGAVVNAVLRSLLRQRD 138
>gi|325498857|gb|EGC96716.1| 16S rRNA methyltransferase B [Escherichia fergusonii ECD227]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A QA+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAVAIKRPQLKGLINGVLRQFHRQQEE 131
>gi|303238065|ref|ZP_07324606.1| transcription antitermination factor NusB [Prevotella disiens
FB035-09AN]
gi|302481761|gb|EFL44815.1| transcription antitermination factor NusB [Prevotella disiens
FB035-09AN]
Length = 355
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ + D ++ + + +S + W FSRL + I++ +
Sbjct: 195 NQELLPEFKDEEDKDFAIKLFRSTILNADTYQRYMSET-SRNWDFSRLAYMDIVIMQIAI 253
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ ++PV V I+EYV +A + +IN +LD ++R
Sbjct: 254 AEMLNFPNIPVSVSINEYVELAKLYSTPRSGSYINGMLDAIAR 296
>gi|34540589|ref|NP_905068.1| NusB family protein [Porphyromonas gingivalis W83]
gi|34396902|gb|AAQ65967.1| NusB family protein [Porphyromonas gingivalis W83]
Length = 364
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 5/146 (3%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRF-----CADTELDVESVYLHVDLEWFRVIIH 74
R A YQ + EI+ E+ D + Y D F +
Sbjct: 214 RQAVADGNYQTIRQENAPIEIVKEFVLKTIRRIEQDTDPSAILLPAYKEKDDAVFGTTLL 273
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
I W R+ + I++ + EL+ ++PV V I+EY+ ++
Sbjct: 274 RNAIINGQEYRHIIRENLINWEVDRIADMDMLIMQLAIAELLHFPNIPVLVTINEYIDLS 333
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEIK 160
F F+N +LD V + K
Sbjct: 334 KLFSTPKSGTFVNGLLDAVVKSLREK 359
>gi|227496158|ref|ZP_03926464.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
DSM 15434]
gi|226834303|gb|EEH66686.1| rRNA (cytosine-C(5)-)-methyltransferase [Actinomyces urogenitalis
DSM 15434]
Length = 527
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 20/172 (11%)
Query: 4 QDNKKDLKLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDV 57
Q + D + S+RR ARL +++AL ++ G ++
Sbjct: 44 QRGQADAEGSNRRRRPSTVDAARLVSLEALTKVRQDGGFANLVLPPMLDAA--------- 94
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
D + + +G + + D +I+ C+ +LD ++ +LR G +L+
Sbjct: 95 --RLDRRDAGFATALTYGTLRLQGRYDAIIAQCVDR--RLDQLDGVVLDVLRLGTHQLLG 150
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V +S V +A +NAVL ++S+K+ + ++
Sbjct: 151 MR-VATHAAVSATVDLASHAAGRGAAGLVNAVLRRISQKDLEQWLAELTEQA 201
>gi|172036538|ref|YP_001803039.1| transcription antitermination protein NusB [Cyanothece sp. ATCC
51142]
gi|254772628|sp|B1WXY6|NUSB_CYAA5 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|171697992|gb|ACB50973.1| transcription termination factor, N utilization substance protein B
[Cyanothece sp. ATCC 51142]
Length = 209
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 27 LYQIDIIGCSTTEIISEYET-----------YRFCADTELDVESVYLHVDLEWFRVIIHG 75
L+Q + + + + + ++ + E+ +I
Sbjct: 67 LFQYETKATTLESAKTMIKDALTLTQEAINRLANAIEFPEIIQLASQYEVREYAIELIGT 126
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R++ ID + + L + W RL I ILR V E++ VP +V I+E V +A
Sbjct: 127 INRRRKEIDEQLEAVLKD-WQLKRLAKIDQDILRLAVAEILFLD-VPEKVSINEAVELAK 184
Query: 136 DFFYGDEPKFINAVLDKV 153
+ D +FIN VL +
Sbjct: 185 RYSDDDGYRFINGVLRRF 202
>gi|52426258|ref|YP_089395.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
gi|52308310|gb|AAU38810.1| Sun protein [Mannheimia succiniciproducens MBEL55E]
Length = 470
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query: 7 KKDLKLSHRRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
K+ +H++ + R + + + Q+ G S + +I E + S D
Sbjct: 18 KRPQTPAHKKIQSVRALSARIILQVLDQGKSLSALIPELQ-------------SQVKAQD 64
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
L + I GV ++ +I + + I+ +L G+ +++ +P
Sbjct: 65 LPLLQEICFGVCRVLPRLEQIIKKLVDK--PLKGKTRIVHCLLLVGLYQILYTR-IPAHA 121
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ E V + +N VL + R+++
Sbjct: 122 AVDEVVNATSALKSENFRGLVNGVLRRFLREQQE 155
>gi|258654277|ref|YP_003203433.1| Fmu (Sun) domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258557502|gb|ACV80444.1| Fmu (Sun) domain protein [Nakamurella multipartita DSM 44233]
Length = 494
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ L + Y A + + D + +G
Sbjct: 41 ARQAALDLL-----------AAVRSRGAYANLALPPILRDRRIGGRDAALATELAYGSCR 89
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +I++C F+ LD + LR G +L+ +P +S V +
Sbjct: 90 ALGQLDAVITACGDR--PFAELDGEVIDALRLGAYQLLHTR-IPPHAAVSSTVELVRAGD 146
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++NAVL +++ + ++ +
Sbjct: 147 RAGAAGYVNAVLRRIAEADLDTWVQRLAPPAE 178
>gi|319442113|ref|ZP_07991269.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
variabile DSM 44702]
Length = 525
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 18/169 (10%)
Query: 3 IQDNKKDLKLSHRR----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
+ ++++ + RR R + L ST + A E
Sbjct: 48 SESHRREHDNARRRIGSGDRVRDIVFEVL-----RKVSTDAA------FANIALPAALRE 96
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + +G + + +D +I+ ++D ++ LR G +++
Sbjct: 97 QKIHGRDAAFATELTYGTLRMQGLLDAVIAE--AAGRPVDKIDAVVLDALRLGAYQIL-R 153
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V + V + F N VL ++R V+A
Sbjct: 154 TRVDDHAAVDTTVELVKANGEAKASGFTNGVLRTLTRTPAETWESRVTA 202
>gi|322615051|gb|EFY11975.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617338|gb|EFY14239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625560|gb|EFY22385.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626402|gb|EFY23211.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632086|gb|EFY28839.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635035|gb|EFY31758.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643264|gb|EFY39831.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646652|gb|EFY43159.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649998|gb|EFY46417.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652715|gb|EFY49055.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659528|gb|EFY55772.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665530|gb|EFY61717.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322670424|gb|EFY66563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670497|gb|EFY66631.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675073|gb|EFY71156.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681610|gb|EFY77639.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685954|gb|EFY81943.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195824|gb|EFZ80997.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196420|gb|EFZ81571.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202705|gb|EFZ87744.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207310|gb|EFZ92260.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211254|gb|EFZ96099.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216037|gb|EGA00768.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223472|gb|EGA07800.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226798|gb|EGA10988.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231840|gb|EGA15950.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233207|gb|EGA17302.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237274|gb|EGA21339.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245509|gb|EGA29508.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323249015|gb|EGA32937.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250638|gb|EGA34519.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323256867|gb|EGA40581.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263016|gb|EGA46563.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266016|gb|EGA49511.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272773|gb|EGA56176.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|238913877|ref|ZP_04657714.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|168245235|ref|ZP_02670167.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168468035|ref|ZP_02701872.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194447684|ref|YP_002047433.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|200388990|ref|ZP_03215602.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|224493263|sp|B4TJX9|RSMB_SALHS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|194405988|gb|ACF66207.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195628892|gb|EDX48302.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|199606088|gb|EDZ04633.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205336021|gb|EDZ22785.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|197249972|ref|YP_002148329.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|224493258|sp|B5F7R5|RSMB_SALA4 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|197213675|gb|ACH51072.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|198244494|ref|YP_002217372.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|224493260|sp|B5FJI4|RSMB_SALDC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|197939010|gb|ACH76343.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326625153|gb|EGE31498.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|167554205|ref|ZP_02347946.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205321540|gb|EDZ09379.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|161616434|ref|YP_001590399.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|197262016|ref|ZP_03162090.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|224493265|sp|A9N8B3|RSMB_SALPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|161365798|gb|ABX69566.1| hypothetical protein SPAB_04249 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197240271|gb|EDY22891.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|161506038|ref|YP_001573150.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|224493259|sp|A9MN78|RSMB_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|160867385|gb|ABX24008.1| hypothetical protein SARI_04219 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|62181914|ref|YP_218331.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168264711|ref|ZP_02686684.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224585203|ref|YP_002639002.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|75480382|sp|Q57J62|RSMB_SALCH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|254766862|sp|C0PZV1|RSMB_SALPC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|62129547|gb|AAX67250.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|205346881|gb|EDZ33512.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|224469731|gb|ACN47561.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|322716400|gb|EFZ07971.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|56415328|ref|YP_152403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364258|ref|YP_002143895.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81360778|sp|Q5PIT6|RSMB_SALPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493266|sp|B5BGV5|RSMB_SALPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|56129585|gb|AAV79091.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|197095735|emb|CAR61305.1| sun protein [Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|16766697|ref|NP_462312.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167995183|ref|ZP_02576273.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|46396986|sp|Q8ZLM5|RSMB_SALTY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|16421964|gb|AAL22271.1| putative rRNA methylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205327090|gb|EDZ13854.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|261248565|emb|CBG26403.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995617|gb|ACY90502.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159951|emb|CBW19470.1| 16S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914431|dbj|BAJ38405.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321226460|gb|EFX51510.1| Ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323131766|gb|ADX19196.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|332990260|gb|AEF09243.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 429
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|284032217|ref|YP_003382148.1| Fmu (Sun) domain-containing protein [Kribbella flavida DSM 17836]
gi|283811510|gb|ADB33349.1| Fmu (Sun) domain protein [Kribbella flavida DSM 17836]
Length = 459
Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 5 DNKKDLKLSHRRG--IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
++ + +R R A + + Q + G Y A + +
Sbjct: 2 SDRTPRNRAPQRRPDKVRQVAYRVIRQ--VNGEDG---------YANLALNKALRDQRLS 50
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + ++HG + + D ++ ++ + +++ + V
Sbjct: 51 GRDAAFCTELVHGTLRWQGAYDAFLARSVSRPLADLDPELLDLL---RLGAHQLLRMRVD 107
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
++E V + +NAVL K+S++ + V+
Sbjct: 108 SYAAVNEMVTLTRAEVGQSRSGLVNAVLRKISQRTLDQWIATVAP 152
>gi|212696078|ref|ZP_03304206.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
7454]
gi|212676707|gb|EEB36314.1| hypothetical protein ANHYDRO_00614 [Anaerococcus hydrogenalis DSM
7454]
Length = 129
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + +++ I +I + + + +
Sbjct: 2 NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLDLKRD------------SFLFQSLK 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ ++I I S RL + +IL V E+ +PV V I+E V I+
Sbjct: 48 SYIENFKNI-EDILINQIGLSSLKRLAKVDRAILFLSVNEMKYLD-IPVSVSINEAVNIS 105
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ D KFIN+VL K++ K
Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127
>gi|145295720|ref|YP_001138541.1| hypothetical protein cgR_1647 [Corynebacterium glutamicum R]
gi|140845640|dbj|BAF54639.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 503
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L + + E Y L + D + I +G +
Sbjct: 67 KPREIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTL 115
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D +I + S +D + +LR G +++ + V +
Sbjct: 116 RNVGLLDEVIKA--ASGRELSDIDPEVLDVLRLGAYQVMFTRVED-HAAVDTSVKMVGGL 172
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NA+L ++RKE + + +
Sbjct: 173 KKFQATGFANAILRNITRKEPEQWLKELEPTEE 205
>gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
Length = 433
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ D + +++G + RK +D + + ++ +
Sbjct: 20 AYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPFVKT-----KIKGWVR 74
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+L + + + VP +I+E V IA +NA+L ++
Sbjct: 75 RLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM 122
>gi|319892211|ref|YP_004149086.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
Length = 433
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E+ D + +++G + RK +D + + ++ +
Sbjct: 20 AYSNLKMNEMLQTYPLNPADRGLYTELVYGTIKRKLTLDYYLKPFVKT-----KIKGWVR 74
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+L + + + VP +I+E V IA +NA+L ++
Sbjct: 75 RLLWMSLYQFLYLDKVPTHALINEAVNIAKKRGGAQTGNTVNAILRQM 122
>gi|260775013|ref|ZP_05883913.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609103|gb|EEX35262.1| ribosomal RNA small subunit methyltransferase B [Vibrio
coralliilyticus ATCC BAA-450]
Length = 426
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGQSLSNALP-------------AAQQQVKPRDQALLQEICYGSLRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P + E V
Sbjct: 51 LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + +S
Sbjct: 108 PRLRGLINAVLRNYQRNQEELDAHAMS 134
>gi|325963042|ref|YP_004240948.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469129|gb|ADX72814.1| ribosomal RNA small subunit methyltransferase RsmB [Arthrobacter
phenanthrenivorans Sphe3]
Length = 533
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 16/143 (11%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L + ++ + D +
Sbjct: 66 RTRRADPARLVAFEVLRAVAAEDAYANLVLPARIRH-----------HGLDKRDAGFATE 114
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + + D +++ C+ +LD + LR GV +L+ VP + + V
Sbjct: 115 LTYGALRGQGTYDAILARCVDR--PLDQLDPAVLDALRIGVHQLLAMR-VPAHAALDQTV 171
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A INAVL KV+
Sbjct: 172 GLARAVIGAGPSALINAVLRKVA 194
>gi|300781095|ref|ZP_07090949.1| possible transcription antitermination protein NusB
[Corynebacterium genitalium ATCC 33030]
gi|300532802|gb|EFK53863.1| possible transcription antitermination protein NusB
[Corynebacterium genitalium ATCC 33030]
Length = 217
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
V L++ + I+ + + ++ R II G I
Sbjct: 18 VDILFEAETRDVDPVAIVEDRAALAGDPTNAVA-------PVADYTREIIAGAAAALDEI 70
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D I L++ W +R+ + +ILR E++ V + I+ + ++ ++ +
Sbjct: 71 DNAIERFLSDNWELNRIPAVDRAILRVATWEILYNDEVEPPISIANAMEMSTEYAGDNAS 130
Query: 144 KFINAVLDKVSR 155
+I+AVLD + +
Sbjct: 131 PYIHAVLDDIIQ 142
>gi|148906361|gb|ABR16335.1| unknown [Picea sitchensis]
Length = 558
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58
+ +K + +S R + AV+ L +I+ G + ++Y + +
Sbjct: 77 PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132
Query: 59 ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ + I+ GV+ K+++D LI S + ++ +L ILR GV E+
Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++ P V ++E V +A +N +L +V+ E
Sbjct: 193 VKLGMPPYAV-VNENVTLARAALRAGAGNMVNGILRRVASDRE 234
>gi|260101433|ref|ZP_05751670.1| transcriptional termination factor [Lactobacillus helveticus DSM
20075]
gi|260084773|gb|EEW68893.1| transcriptional termination factor [Lactobacillus helveticus DSM
20075]
Length = 135
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + + ET V ++ L + + +I GV
Sbjct: 9 HESRKVAMQAVY---LANQEPDLSAEDVET--------KVVATLNLKQLSAYSKKLIEGV 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++ + +++ L + W R+ I+ +I+ + E+ + + ++E + + +
Sbjct: 58 LENREDLQSELTNHLKKSWRLERVSQIVVAIMEVALFEIKNSDEIDPKAAVNEALNLCDE 117
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 118 FAEPKEKPFINGMLANFV 135
>gi|325695223|gb|EGD37124.1| RNA methyltransferase Sun [Streptococcus sanguinis SK150]
Length = 438
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A +S D +++G + RK ++ +S + ++ D L
Sbjct: 24 AYSNIALNRALSQSSLNQADKGLVTELVYGTVARKITLEWYLSHLIEDRDKL---DNWLY 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+L + +++ +P ++ E V IA KF NA+L ++ R+
Sbjct: 81 ILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRK-RGSEKFANALLRRIERE 130
>gi|116788313|gb|ABK24833.1| unknown [Picea sitchensis]
Length = 515
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--- 58
+ +K + +S R + AV+ L +I+ G + ++Y + +
Sbjct: 77 PVDKSKINSNVSPHRAAS---AVRLL-RIEQGGAFADLLNADYRESAIDDEMDYIQRTLG 132
Query: 59 ---SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ + I+ GV+ K+++D LI S + ++ +L ILR GV E+
Sbjct: 133 FRTNPLDARNTRLVTDIVAGVVRWKRYLDYLIFSLYDGAKNVKDMEPLLQQILRIGVYEI 192
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
++ P V ++E V +A +N +L +V+ E
Sbjct: 193 VKLGMPPYAV-VNENVTLARAALRAGAGNMVNGILRRVASDRE 234
>gi|62390481|ref|YP_225883.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium glutamicum
ATCC 13032]
gi|41325818|emb|CAF21607.1| PUTATIVE 16S RRNA M(5)C 967 METHYLTRANSFERASE [Corynebacterium
glutamicum ATCC 13032]
Length = 511
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 19/170 (11%)
Query: 6 NKKDLKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
N+K + R A + L + + E Y L +
Sbjct: 58 NRKPPAQAREVRALGVDKPREIAFEVL-----------DRVRTGEAYANLVLPRLLSKHN 106
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + I +G + +D +I + S +D + +LR G +++
Sbjct: 107 LSGRDAAFATEITYGTLRNVGLLDEVIKA--ASGRELSDIDPEVLDVLRLGAYQVMFTRV 164
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ V + F NA+L ++RKE + + +
Sbjct: 165 ED-HAAVDTSVKMVGGLKKFQATGFANAILRNITRKEPEQWLKELEPAEE 213
>gi|37681411|ref|NP_936020.1| sun protein [Vibrio vulnificus YJ016]
gi|320154882|ref|YP_004187261.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
gi|46396771|sp|Q7MGK4|RSMB_VIBVY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|37200163|dbj|BAC95991.1| sun protein [Vibrio vulnificus YJ016]
gi|319930194|gb|ADV85058.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
MO6-24/O]
Length = 426
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LYQ+ G S + + + + D + I +G +
Sbjct: 4 RAAAANVLYQVVDRGNSLSTALP-------------EAQQSIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P + E V A
Sbjct: 51 LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R+++
Sbjct: 108 PRLRGLINAVLRNYQREQQA 127
>gi|116495106|ref|YP_806840.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
gi|116105256|gb|ABJ70398.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus casei ATCC 334]
Length = 446
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 19/161 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ ++ RL AV+ L + G Y + D
Sbjct: 1 MTPNNP----RLLAVETL--SRVTGQGG---------YSNLTLDHVINSHKLTPRDAGLL 45
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++GV+ R+ +D ++ + + +LD + +L V +L VP + +
Sbjct: 46 TNIVYGVIQRQLTLDFYLAPFIKGR----KLDNWIRCLLDTAVYQLQYLDKVPARAVFFD 101
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
IA + KF+ VL R + + +
Sbjct: 102 STEIAKKLGHQGIAKFVTGVLRNAQRTGFPDPAAIADPVKR 142
>gi|89898049|ref|YP_515159.1| transcription antitermination protein NusB [Chlamydophila felis
Fe/C-56]
gi|89331421|dbj|BAE81014.1| N utilization protein B [Chlamydophila felis Fe/C-56]
Length = 154
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +Q LY +D+ S ++ + L
Sbjct: 21 PKQKMREIVLQMLYALDMDPMSEESLVPLLMAETAVTQKHAFSALNFSKEILA------- 73
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
K L+ + + SF +L ++ ++LR + E + ++I+E +
Sbjct: 74 -----KSPELDLLIAQTVKNTSFEKLTLMEKNVLRLALFEHFHGQHINAAILIAEATRLV 128
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F Y + F++AVL+ + R
Sbjct: 129 KKFSYTEACSFVHAVLNDIFR 149
>gi|257438997|ref|ZP_05614752.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
prausnitzii A2-165]
gi|257198582|gb|EEU96866.1| ribosomal RNA small subunit methyltransferase B [Faecalibacterium
prausnitzii A2-165]
Length = 440
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ D + I + V++ + +D ++ L + +RLD +
Sbjct: 21 FSNLVLDAELRRQKLEGRDKAFAGAIFYTVLEHQGTLDFILEQFLPKG--LARLDPQVRE 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
ILRA + + VPV ++E V + F +NAVL K
Sbjct: 79 ILRAALAQARYM-QVPVSAAVNEAVKLTRTFKKASASGLVNAVLRK 123
>gi|37520905|ref|NP_924282.1| transcription antitermination protein NusB [Gloeobacter violaceus
PCC 7421]
gi|39931743|sp|Q7NKZ0|NUSB_GLOVI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|35211900|dbj|BAC89277.1| transcription termination factor [Gloeobacter violaceus PCC 7421]
Length = 211
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ ++ + ++D L+ +C+ E W RL I ILR ++E++E SVP V
Sbjct: 113 RAYAFELLGAFVREGDNLDKLLDTCM-EGWQVERLTRIDRDILRLALVEMVELKSVPFRV 171
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
I E V +A + +FIN VL +V + +++
Sbjct: 172 AIDEAVELAKKYSTDTAVRFINGVLRRVVQHLQLE 206
>gi|330752415|emb|CBL87366.1| thioredoxin family protein [uncultured Flavobacteria bacterium]
Length = 307
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 2/126 (1%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
II+ F D++ + + D+ + + ++ ++ I+ + S T W
Sbjct: 177 VNSIITNNINKLFKNDSKSN-KFFKKDDDVSFMISLFKQTINNEEFIENQL-SGKTPNWD 234
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
R+ + IL+ + EL+ ++PV+ I+EY+ IA ++ FIN VLD +
Sbjct: 235 KERIAGLDYVILKMAISELLYFPTIPVKATINEYLEIAKEYATPKSAIFINGVLDNSLKD 294
Query: 157 EEIKRS 162
K+
Sbjct: 295 FSSKKM 300
>gi|330995945|ref|ZP_08319840.1| transcription antitermination factor NusB [Paraprevotella
xylaniphila YIT 11841]
gi|329574284|gb|EGG55859.1| transcription antitermination factor NusB [Paraprevotella
xylaniphila YIT 11841]
Length = 310
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D E+ + + ++ LI S T+ W F+R+ ++ I++ + E++
Sbjct: 202 EFKDEEDREFAHRLFRNTLLNAEYYRKLI-SDNTKNWEFNRIALMDLLIMQIALAEILTF 260
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++P+ V ++EYV IA + ++N +LD VS+K ++
Sbjct: 261 PNIPLNVSLNEYVDIAKIYSTPRSGAYVNGLLDAVSKKLIAEK 303
>gi|237713467|ref|ZP_04543948.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407253|ref|ZP_06083801.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644674|ref|ZP_06722424.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
2a]
gi|294809065|ref|ZP_06767787.1| transcription antitermination factor NusB [Bacteroides
xylanisolvens SD CC 1b]
gi|298482673|ref|ZP_07000857.1| NusB family protein [Bacteroides sp. D22]
gi|229446449|gb|EEO52240.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354061|gb|EEZ03153.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292640008|gb|EFF58276.1| transcription antitermination factor NusB [Bacteroides ovatus SD CC
2a]
gi|294443790|gb|EFG12535.1| transcription antitermination factor NusB [Bacteroides
xylanisolvens SD CC 1b]
gi|295087143|emb|CBK68666.1| transcription antitermination factor NusB [Bacteroides
xylanisolvens XB1A]
gi|298271136|gb|EFI12713.1| NusB family protein [Bacteroides sp. D22]
Length = 308
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|254526482|ref|ZP_05138534.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
gi|221537906|gb|EEE40359.1| ribosomal RNA small subunit methyltransferase B [Prochlorococcus
marinus str. MIT 9202]
Length = 438
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + L ++ S + + Y+F +D+ + + G +
Sbjct: 8 RKAAWEILLKVSSGDFSDHALEKVLKNYQF------------NPLDIAFITELSFGCIRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + + T K + + L +L G+ +L++ +P IS V +A
Sbjct: 56 RKFLD--LWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFSAAISTTVEVAKKTDL 113
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
+NA+L SRK E K
Sbjct: 114 NGLAGTVNAILRNASRKLEQK 134
>gi|27364478|ref|NP_760006.1| 16S rRNA methyltransferase B [Vibrio vulnificus CMCP6]
gi|46396909|sp|Q8DDE5|RSMB_VIBVU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|27360597|gb|AAO09533.1| ribosomal RNA small subunit methyltransferase B [Vibrio vulnificus
CMCP6]
Length = 426
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LYQ+ G S + + + + D + I +G +
Sbjct: 4 RAAAANVLYQVVDRGNSLSTALP-------------EAQQSIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P + E V A
Sbjct: 51 LPRLESIAGKLMDK--PLKGKQRVFHHLILVGLYQLGHMR-IPAHAAVGETVEGAQALKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R+++
Sbjct: 108 PRLRGLINAVLRNYQREQQA 127
>gi|293370796|ref|ZP_06617342.1| transcription antitermination factor NusB [Bacteroides ovatus SD
CMC 3f]
gi|292634156|gb|EFF52699.1| transcription antitermination factor NusB [Bacteroides ovatus SD
CMC 3f]
Length = 308
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|270339970|ref|ZP_06006596.2| NusB family protein [Prevotella bergensis DSM 17361]
gi|270333141|gb|EFA43927.1| NusB family protein [Prevotella bergensis DSM 17361]
Length = 369
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D ++ + + +S + W FSRL + I++ + E++
Sbjct: 201 EYKDEEDKDFACKLFRATILNADDYHRYMSET-SRNWDFSRLAYMDVVIMQIAIAEMLTF 259
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++P V I+EYV +A + +IN +LD + R
Sbjct: 260 PNIPATVTINEYVELAKLYSTPRSGAYINGMLDSIGR 296
>gi|227893296|ref|ZP_04011101.1| transcription termination [Lactobacillus ultunensis DSM 16047]
gi|227864876|gb|EEJ72297.1| transcription termination [Lactobacillus ultunensis DSM 16047]
Length = 130
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E V ++ L + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLNAEEVEA--------KVVATLNLKQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ + +++ L + W R+ I+ +I+ + E+ E + + ++E + + +
Sbjct: 53 LKNREDLQSELTNHLKKGWRLERVSQIVVAIMEVALFEIKESDEIDPKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 113 FAEPKEKPFINGMLANFV 130
>gi|255534372|ref|YP_003094743.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
3519-10]
gi|255340568|gb|ACU06681.1| Transcription termination protein NusB [Flavobacteriaceae bacterium
3519-10]
Length = 301
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D E+ R ++ ++ + + + L E W R+ ++ IL + EL
Sbjct: 203 KDEDDREFARRLLKDTLNHWEESEKKLVGRL-ENWDIERVSLVDKIILVTAITELDYFPL 261
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P V+I+EY+ I+ F FIN +LDK ++
Sbjct: 262 TPARVVINEYIEISKVFSTDRSNIFINGILDKYTKD 297
>gi|331701497|ref|YP_004398456.1| sun protein [Lactobacillus buchneri NRRL B-30929]
gi|329128840|gb|AEB73393.1| sun protein [Lactobacillus buchneri NRRL B-30929]
Length = 443
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 15/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV L + + +Y + + D F I++GV+
Sbjct: 9 RQLAVMTL------------VRTSNGSYSNLQINAVIQSTSMGPADKGLFTNIVYGVIQH 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ++ + L E + + + +L + +L VP I E + IA +
Sbjct: 57 RLTLEYQLRPFLREP---EKTEAWVKELLYTAMYQLEYLDRVPKRAIFDETIKIAKQMGH 113
Query: 140 GDEPKFINAVLDKVSRK 156
+F+ +L ++ R+
Sbjct: 114 DGTRRFVTGILHQMDRQ 130
>gi|158313556|ref|YP_001506064.1| Fmu (Sun) domain-containing protein [Frankia sp. EAN1pec]
gi|158108961|gb|ABW11158.1| Fmu (Sun) domain protein [Frankia sp. EAN1pec]
Length = 495
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 19/155 (12%)
Query: 10 LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ +S R ARL A + L +D G ++ + R
Sbjct: 1 MSVSAPRRGGTTDPARLLAWEVLRAVDERGAYANLLLPALLSGR-----------RLSPR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + +G + + +D ++ + + + +D + LR G +L+ VP
Sbjct: 50 DRGFATELTYGSLRAQGTLDGVLDTVTSR--PVASVDPPVRDALRLGAYQLLSTR-VPPR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++ V + +F NAVL +V+ + E
Sbjct: 107 AAVASTVDLVRATCGERPVRFANAVLRRVAARIEA 141
>gi|220933384|ref|YP_002512283.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219994694|gb|ACL71296.1| sun protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 432
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++AL ++ I G S ++++ + + D + + + +
Sbjct: 4 RQITLKALKRVVINGASLSDVL-------------PPLLAPLAPRDRAFAQALAFATLRW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ L L++ D + ++ G+ EL+ P I E +A
Sbjct: 51 HHRLEALTGRLLSKPMRDK--DRDVGLVIEMGLCELLYLR-TPDYAAIQETAGLAKSLGK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+NAVL +V R+ +
Sbjct: 108 PWATGVVNAVLRRVQREGDA 127
>gi|23308856|ref|NP_600813.2| tRNA and rRNA cytosine-C5-methylase [Corynebacterium glutamicum
ATCC 13032]
gi|21324368|dbj|BAB98992.1| tRNA and rRNA cytosine-C5-methylases [Corynebacterium glutamicum
ATCC 13032]
Length = 444
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L + + E Y L + D + I +G +
Sbjct: 8 KPREIAFEVL-----------DRVRTGEAYANLVLPRLLSKHNLSGRDAAFATEITYGTL 56
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D +I + S +D + +LR G +++ + V +
Sbjct: 57 RNVGLLDEVIKA--ASGRELSDIDPEVLDVLRLGAYQVMFTRVED-HAAVDTSVKMVGGL 113
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NA+L ++RKE + + +
Sbjct: 114 KKFQATGFANAILRNITRKEPEQWLKELEPAEE 146
>gi|328952872|ref|YP_004370206.1| sun protein [Desulfobacca acetoxidans DSM 11109]
gi|328453196|gb|AEB09025.1| sun protein [Desulfobacca acetoxidans DSM 11109]
Length = 456
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ + + + L H D R ++ GV+
Sbjct: 2 RGLAVEIISIWQKTNVPGGAPGPFLDA---LIEQTLSDHPRLSHPDRALLRELVTGVLRW 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D I ++L ++ ++LR +L+ +P ++E V +A
Sbjct: 59 RGRLDYAIGQ--VSHQPVNKLHPLVLNLLRLTTYQLLFLDRIPASAAVNESVKLAKIHRL 116
Query: 140 GDE-PKFINAVLDKVS 154
F+NA K++
Sbjct: 117 PPALIGFVNAAARKLA 132
>gi|325697709|gb|EGD39594.1| RNA methyltransferase Sun [Streptococcus sanguinis SK160]
Length = 438
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A +S D +++G + RK ++ +S + ++ D L
Sbjct: 24 AYSNIALNRALSQSSLNQADKGLVTELVYGTVARKITLEWYLSHLIEDRDKL---DNWLY 80
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+L + +++ +P ++ E V IA KF NA+L ++ R+
Sbjct: 81 ILLMLSLYQMLYLDKIPQHAVVHEAVEIAKIRK-RGSEKFANALLRRIERE 130
>gi|282879285|ref|ZP_06288030.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
35310]
gi|281298567|gb|EFA90991.1| transcription antitermination factor NusB [Prevotella buccalis ATCC
35310]
Length = 333
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
AD E+ E D ++ + + L S + W FSRL +
Sbjct: 189 DQANKADQEILPEYK-DEEDRDFATKLFRATILNADTY-QLYMSETSRNWDFSRLAYMDV 246
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I++ + E++ ++PV V I EYV A + +IN +LD ++R
Sbjct: 247 VIMQIAIAEMLTFPNIPVSVTIYEYVNQAKRYSTTKSGGYINGMLDSIAR 296
>gi|291300071|ref|YP_003511349.1| Fmu (Sun) domain-containing protein [Stackebrandtia nassauensis DSM
44728]
gi|290569291|gb|ADD42256.1| Fmu (Sun) domain protein [Stackebrandtia nassauensis DSM 44728]
Length = 532
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 23/164 (14%)
Query: 1 MTIQDNKKDLK--LSHRRG-------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCA 51
MT + + + H R R A + L + ++ + +R
Sbjct: 1 MTDRRHDRGASRDPRHGRHGRSATVDNPRRIAYEVLAAVSTQDAYANLVLPKLLRHR--- 57
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + + +G + R+ +D +I+S + S LD + +LR G
Sbjct: 58 --------GVSGRDAAFATELSYGTLRRRGSLDAVIAS--ASGRAVSALDQSVADVLRLG 107
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
V +L+ + V +A F+NAV+ KVSR
Sbjct: 108 VYQLLYTRVAAHAAA-NTTVSLARKVCGHRPAGFVNAVMRKVSR 150
>gi|257066525|ref|YP_003152781.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
gi|256798405|gb|ACV29060.1| NusB antitermination factor [Anaerococcus prevotii DSM 20548]
Length = 127
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + +YQ I + D ++ R I
Sbjct: 2 NRVEQREWVFKLIYQDSISK----------------IEDIDKALEELDLTDEDFVRKSIS 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ ID ++S L RL +L SIL + E+ +PV V I+E V +A
Sbjct: 46 SFLNNFSSIDEKLTSNLDS--KRKRLSKVLRSILYLSINEMYFMD-IPVSVSINEAVNLA 102
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ D+ K +N++L + RK+
Sbjct: 103 KKYSDEDDYKLVNSILGSIVRKD 125
>gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri 202-4]
gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri 202-4]
Length = 438
Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A V+ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELVKHELKPADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 F--FYGDEPKFINAVLDKVSRKEEI 159
F K +N +L + R+ ++
Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131
>gi|229493567|ref|ZP_04387352.1| Fmu protein [Rhodococcus erythropolis SK121]
gi|229319528|gb|EEN85364.1| Fmu protein [Rhodococcus erythropolis SK121]
Length = 482
Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 23/169 (13%)
Query: 8 KDLKLSHRRG---------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
K+ K + RLAA + E + Y L +
Sbjct: 23 KNTKPKQAKRPDPATAGLDQPRLAA-----------RDVLRAVRERDAYANLVLPGLLRD 71
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + +G + +D +I+ +D L +LR G +L+
Sbjct: 72 RKLDARDAALATELAYGAARAQGLLDAVIA--HAAGRPIEEIDGTLLDVLRLGSYQLLRT 129
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P ++ V + F+NAVL +VS + + + ++
Sbjct: 130 RVAP-HAAVATSVDLVRAENGQGRAGFVNAVLRRVSERTQEEWVELLAP 177
>gi|296117827|ref|ZP_06836410.1| n utilization substance protein B-like protein [Corynebacterium
ammoniagenes DSM 20306]
gi|295969058|gb|EFG82300.1| n utilization substance protein B-like protein [Corynebacterium
ammoniagenes DSM 20306]
Length = 220
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
Y+ + I+ + + + E+ +V++ GV + ID I
Sbjct: 2 YEAENRDMDPVAIVEDRIKLAREDEHGVA-------PIAEYTKVLVTGVAEELDTIDSTI 54
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVIISEYVCIAHDFFYGDEPKFI 146
L E W R+ + +I+R V EL+ + + +SE V +A ++ +I
Sbjct: 55 ERYLAEDWELYRIPAVDRAIMRVAVWELLYNSEEIDLATAVSEGVELASEYSTDAAAPYI 114
Query: 147 NAVLDKVSRKEEIKRS 162
NAVLD V+
Sbjct: 115 NAVLDDVAHSRSEDNP 130
>gi|163841091|ref|YP_001625496.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
ATCC 33209]
gi|162954567|gb|ABY24082.1| 16S rRNA m(5)C 967 methyltransferase [Renibacterium salmoninarum
ATCC 33209]
Length = 458
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y ++ D + +G + K D +I+SC+ + +D +
Sbjct: 15 AYANLVLPARIRQNRLDKRDAGLATELCYGALRGKGTYDAIIASCVDR--PLAEVDEAIL 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
LR G +L+ +P +++ V +A FINAVL K++ K+ + +
Sbjct: 73 DALRLGSHQLLAMR-IPPHAAVNQTVGLARAVIGAGPASFINAVLRKIAAKDLAEWLDEL 131
Query: 166 SA 167
+A
Sbjct: 132 TA 133
>gi|58337606|ref|YP_194191.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
gi|227904246|ref|ZP_04022051.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
4796]
gi|58254923|gb|AAV43160.1| transcriptional termination factor [Lactobacillus acidophilus NCFM]
gi|227867894|gb|EEJ75315.1| transcriptional termination factor [Lactobacillus acidophilus ATCC
4796]
Length = 130
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R A+QA+Y + E E V ++ L+ + + +I GV
Sbjct: 4 HESRKVAMQAVY---LANQEPDLNAEEVEA--------KVVATLNLNQLSAYSKKLIEGV 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ ++ + ++S L + W R+ + +I+ + E+ + + ++E + + +
Sbjct: 53 LENREDLQSELTSHLKKGWRLERVSQTIVAIMEIALFEIKNSDEIEPKAAVNEALNLCDE 112
Query: 137 FFYGDEPKFINAVLDKVS 154
F E FIN +L
Sbjct: 113 FAEPKEKPFINGMLANFV 130
>gi|312139583|ref|YP_004006919.1| RNA binding sun protein [Rhodococcus equi 103S]
gi|311888922|emb|CBH48235.1| putative RNA binding Sun protein [Rhodococcus equi 103S]
Length = 437
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 3/130 (2%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+ E + Y L E D + +G + +D +I+ C
Sbjct: 4 AVRERDAYANLVLPGLLRERRLDGRDAALATELAYGAARARGLLDAVIAEC--AGRPVEE 61
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+D L +L G +L+ P ++ V + + F+NAVL +VS K E
Sbjct: 62 IDGPLLDVLELGAYQLLRTRIAP-HAAVATSVDLVRAEAGPGKAGFVNAVLRRVSEKTED 120
Query: 160 KRSGCVSAIT 169
+ ++
Sbjct: 121 EWVARLAPDA 130
>gi|240172782|ref|ZP_04751441.1| fmu protein (sun protein) [Mycobacterium kansasii ATCC 12478]
Length = 464
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA AL + + R D + + +G
Sbjct: 23 ARAAAFDALCAVTSRDAYANLALPALLRER-----------GITGRDAAFATELTYGTCR 71
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +I + +D +L +LR G +L+ +S V A F
Sbjct: 72 TRGLLDAVIGAAAGRAP--EAIDPVLLDLLRLGTYQLLRTRVGS-HAAVSTTVDQAGIEF 128
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+N VL ++ ++E ++
Sbjct: 129 DSARAGFVNGVLRTIAGRDERSWVDELAP 157
>gi|71083732|ref|YP_266452.1| antitermination protein NusB [Candidatus Pelagibacter ubique
HTCC1062]
gi|71062845|gb|AAZ21848.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
HTCC1062]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ +Q LY + + +RF ++ + ++ G ++R
Sbjct: 12 RVIIIQKLYGNFFN----DDTDLTFPKHRF----------------KKFIKDVVLGTIER 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ I + L+E + LD + I+++ + E + V ++II EY+ ++ F
Sbjct: 52 DEVIKEEVKKYLSEDLELTNLDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLDASNFFLE 111
Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
+ K++NA+LDK+++K +
Sbjct: 112 DGQTKYLNAILDKIAKKIRTTNA 134
>gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
33323]
gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri MV-22]
gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
33323]
gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri MV-22]
Length = 438
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 17/145 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A V+ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELVKHELKPADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDKFLMPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 F--FYGDEPKFINAVLDKVSRKEEI 159
F K +N +L + R+ ++
Sbjct: 107 FAKKNSGSYKLVNGILRALERQGKV 131
>gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_33]
gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_33]
Length = 435
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E + + I +GV+ K+ +D +I E +
Sbjct: 18 AYSNIALNETFKTLDINSKEKTFITEIFYGVLRNKKFLDYIIERYTKEIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + ++ +S V + E + + KFIN L R ++ +
Sbjct: 73 NLLRISIYQITFMNSDDKGV-VWEATELVKKKYGMTISKFINGTLRNYLRNKDTE 126
>gi|260171339|ref|ZP_05757751.1| putative N utilization substance protein [Bacteroides sp. D2]
gi|315919650|ref|ZP_07915890.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693525|gb|EFS30360.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 308
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|255994461|ref|ZP_05427596.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
49989]
gi|255993174|gb|EEU03263.1| 16S rRNA M(5)C 967 methyltransferase [Eubacterium saphenum ATCC
49989]
Length = 461
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA ALY I+ S + + R ++ G +
Sbjct: 11 RLAAFWALYNIEKGKYSNVAFEES--------------TKGLSAREAAFVRELVFGTLKL 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D ++ +K + +LR G+ +L SVP ++E + IA
Sbjct: 57 NIKLDHAMNHLKDKKARIK---LKDRILLRLGLYQLDYMDSVPDYAAVNETIAIAKKLVK 113
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
INA+L RK +
Sbjct: 114 NK-VGLINAILRGYIRKRQEIE 134
>gi|238896785|ref|YP_002921530.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae NTUH-K2044]
gi|238549112|dbj|BAH65463.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 431
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVLPPLQQ-------------KVSDKDKALLQELCFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ LIS + + + + ++ G+ +L+ +P ++E V A
Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131
>gi|157412841|ref|YP_001483707.1| Sun protein [Prochlorococcus marinus str. MIT 9215]
gi|157387416|gb|ABV50121.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9215]
Length = 438
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + L ++ S + + Y+F + D+ + + G +
Sbjct: 8 RKAAWEILLKVSSGDFSDHALEKVLKNYQFNSL------------DIAFITELSFGCIRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + + T K + + L +L G+ +L++ +P IS V +A
Sbjct: 56 RKFLD--LWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAISTTVEVAKKTDL 113
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
+NA+L SRK E K
Sbjct: 114 NGLAGTVNAILRNASRKLEQK 134
>gi|325846649|ref|ZP_08169564.1| transcription antitermination factor NusB [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481407|gb|EGC84448.1| transcription antitermination factor NusB [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 129
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + +++ I +I + + + +
Sbjct: 2 NRAKQRDWVFKIIFENQIKN--IDDIDQAIINHDLDLKRD------------SFLFQSLK 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+D ++I I S RL + +IL V E+ +PV V I+E V I+
Sbjct: 48 SYIDNFKNI-EDILINQIGLSSLKRLAKVDRAILFLSVNEMKYLD-IPVSVSINEAVNIS 105
Query: 135 HDFFYGDEPKFINAVLDKVSRK 156
+ D KFIN+VL K++ K
Sbjct: 106 KKYSTSDGYKFINSVLGKIAEK 127
>gi|332090533|gb|EGI95631.1| ribosomal RNA small subunit methyltransferase B [Shigella boydii
3594-74]
Length = 454
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 16/146 (10%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
++ R A QA+ Q+ G S + I+ + D + +
Sbjct: 27 EKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELC 73
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 74 FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 131 AIAIKRPQLKGLINGVLRQFQRQQEE 156
>gi|254784303|ref|YP_003071731.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
gi|237683392|gb|ACR10656.1| ribosomal RNA small subunit methyltransferase B [Teredinibacter
turnerae T7901]
Length = 433
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 6/141 (4%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
D + + + + D F+ + +G + ++ + +
Sbjct: 2 ADARVQAARTLGEVLAKHCSLNKPFDTGINKLDERDRGLFQELCYGTLRWYHRLEAI--A 59
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
+ D + ++L G+ +L VP ISE V + +N
Sbjct: 60 GELLQKPLRNKDQDVYALLLIGLYQLEYLR-VPDHAAISETVNASRALKKPWASGLLNGA 118
Query: 150 LDKVSRKEE---IKRSGCVSA 167
L R E K SG A
Sbjct: 119 LRSFQRDREQIFKKISGKPQA 139
>gi|160887367|ref|ZP_02068370.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
gi|237722651|ref|ZP_04553132.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|299148943|ref|ZP_07042005.1| NusB family protein [Bacteroides sp. 3_1_23]
gi|156107778|gb|EDO09523.1| hypothetical protein BACOVA_05386 [Bacteroides ovatus ATCC 8483]
gi|229448461|gb|EEO54252.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298513704|gb|EFI37591.1| NusB family protein [Bacteroides sp. 3_1_23]
Length = 308
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWDLDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTAKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|320450772|ref|YP_004202868.1| 16S rRNA M [Thermus scotoductus SA-01]
gi|320150941|gb|ADW22319.1| 16S rRNA M [Thermus scotoductus SA-01]
Length = 399
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L +++ G + D + +++GV+ R
Sbjct: 7 RALAVRILLEVERGG------------RAQLLLDRALDRLSWPERDRAYATHLVYGVLRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+++D L+ RL + ILR G E + +S +V A
Sbjct: 55 LRYLDFLLEPH---LRKPERLPPQVRWILRLGAWEWLAGK--ADHARVSPWVEEAKR-VS 108
Query: 140 GDEPKFINAVLDKVS 154
+NAVL ++S
Sbjct: 109 PRLAGLVNAVLRRLS 123
>gi|166154176|ref|YP_001654294.1| transcription antitermination protein NusB [Chlamydia trachomatis
434/Bu]
gi|166155051|ref|YP_001653306.1| transcription antitermination protein NusB [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335421|ref|ZP_07223665.1| transcription antitermination protein NusB [Chlamydia trachomatis
L2tet1]
gi|238687432|sp|B0B961|NUSB_CHLT2 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|238687451|sp|B0BAU0|NUSB_CHLTB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|165930164|emb|CAP03648.1| Antitermination protein [Chlamydia trachomatis 434/Bu]
gi|165931039|emb|CAP06602.1| Antitermination protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 168
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M ++ S + R +QALY ++I ++S T E
Sbjct: 4 MASDKACAPVRASRPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------E 52
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
+ + + + + + +D L+ + + + +RL +I +ILR + E +
Sbjct: 53 ASVSKKNAAYALMFCRAIRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQN 111
Query: 118 --CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
C VPV V+I+E + F Y + I AVL +
Sbjct: 112 QDCCPVPVAVLIAETTRLIKKFSYSEGSSLILAVLGSI 149
>gi|229520215|ref|ZP_04409642.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
gi|229342809|gb|EEO07800.1| ribosomal RNA small subunit methyltransferase B [Vibrio cholerae TM
11079-80]
Length = 426
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA ALYQ+ +G S + + + D + I +GV+ +
Sbjct: 4 RAAAASALYQVVDLGHSLSNALP-------------AAQQQIRPRDHALLQEICYGVLRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + ++ G+ +L +P + E V D
Sbjct: 51 LPRLESI--SQALMEKPLKGKQRVFHFLILVGLYQLSFMR-IPAHAAVGETVEGTQDLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRDQE 126
>gi|152972197|ref|YP_001337343.1| 16S rRNA methyltransferase B [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|224493256|sp|A6TEU2|RSMB_KLEP7 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|150957046|gb|ABR79076.1| 16S rRNA m5C967 methyltransferase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 431
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVLPPLQQ-------------KVSDKDKALLQELCFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ LIS + + + + ++ G+ +L+ +P ++E V A
Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131
>gi|257068637|ref|YP_003154892.1| transcription antitermination factor NusB [Brachybacterium faecium
DSM 4810]
gi|256559455|gb|ACU85302.1| transcription antitermination factor NusB [Brachybacterium faecium
DSM 4810]
Length = 178
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
H R R+ A+ L++ D +++ E + +W R ++
Sbjct: 42 HGRSRERIRAIDVLFEADAKRIDVLDVLQERLRR-----------TAAQTPLPQWSRTLV 90
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE-VIISEYVC 132
ID + + + W R+ + +ILR G E++ II EY
Sbjct: 91 ELYAPHAVDIDEDL-ATHSRDWPLHRMPAVDRAILRLGAAEVLYGEEESRRGTIIGEYTK 149
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
IA D P+F+N +L ++
Sbjct: 150 IAEVLSTDDSPRFVNGLLQRLV 171
>gi|297748961|gb|ADI51507.1| N utilization substance protein B [Chlamydia trachomatis D-EC]
gi|297749841|gb|ADI52519.1| N utilization substance protein B [Chlamydia trachomatis D-LC]
Length = 176
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M ++ S + R +QALY ++I ++S T E
Sbjct: 12 MASDKACAPVRASRPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------E 60
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
+ + + + + + +D L+ + + + +RL +I +ILR + E +
Sbjct: 61 ASVSKKNAAYALMFCRAIRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQN 119
Query: 118 --CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
C VPV V+I+E + F Y + I AVL +
Sbjct: 120 QDCCPVPVAVLIAETTRLIKKFSYSEGSSLILAVLGSI 157
>gi|126656189|ref|ZP_01727573.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
gi|126622469|gb|EAZ93175.1| transcription antitermination protein NusB [Cyanothece sp. CCY0110]
Length = 209
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 13/138 (9%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH-----------VDLEWFRVIIHG 75
L+Q +I + + + ++ + + E+ +I
Sbjct: 67 LFQYEIKATTLESAKTMIKDALTLTQEAINRLANAVEFPEIIQLASQYEVREYTLELIGT 126
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ R+Q ID + + L + W RL I ILR V E++ VP +V I+E V +A
Sbjct: 127 INRRRQEIDQQLEAVLKD-WQLRRLAKIDQDILRLAVAEILFLD-VPEKVAINEAVELAK 184
Query: 136 DFFYGDEPKFINAVLDKV 153
+ D +FIN VL +
Sbjct: 185 RYSDDDGYRFINGVLRRF 202
>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
Length = 461
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 54/154 (35%), Gaps = 18/154 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + + L H AR AV+ L + + + + +
Sbjct: 1 MNSLGSDRPLSNDHN---ARRTAVRILTRAEKEKAYVN------------LLLQRQLREL 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + +++G + + +D I L S L ++ +ILR G +L+
Sbjct: 46 GDSRDRQLAAALVNGTLKNRLTLDYAIRRHLKT--PMSALPHMVRAILRTGAFQLLYMDR 103
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+P ++E V +N+VL +V+
Sbjct: 104 IPAAAAVNEAVKSVKAE-EPKFAGLVNSVLHRVA 136
>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 4 QDNKKDLKLSHRR--GIARLAAVQALYQIDIIGCSTTEIISE-----YETYRFCADTELD 56
+ K +L++S R R L +I++ G + + + T
Sbjct: 50 KTQKLNLQVSPHRAVSAVR------LMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGF 103
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
DL I+ G + ++++D LI S ++ +F ++ +L ILR G E++
Sbjct: 104 RTKDLDDRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIV 163
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ V + E V +A +N +L K+
Sbjct: 164 KLDMPSYAV-VDENVRLAKVSLRPGAGNMVNGILRKLV 200
>gi|87121018|ref|ZP_01076910.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
gi|86163856|gb|EAQ65129.1| Fmu, rRNA SAM-dependent methyltransferase [Marinomonas sp. MED121]
Length = 412
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
++ + + I GV ++ + F D + + + + ++
Sbjct: 7 RKQADVKPEHIPQLKEICFGVSRHYPKLNS--FALHMLDKPFQEKDYDVYAAILVALYQI 64
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P ++E V A K +NA+L + R+ + ++
Sbjct: 65 DYMD-TPEHAAVNEAVESAKLIGKPWAGKLVNAILRRYLREADDIKA 110
>gi|326382170|ref|ZP_08203862.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326198900|gb|EGD56082.1| Fmu (Sun) domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 480
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR+ A + E + Y +L E D + +G
Sbjct: 36 ARIVA-----------RDVLRAVRERDAYANLLLPKLLRERKISGRDAGLATELTYGTAR 84
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +IS+ + +D L +LR G +L+ +S V IA
Sbjct: 85 SMGFLDAVISA--AAGRPAAEIDGPLLDVLRLGAYQLLRTRIGS-HAAVSTSVDIARSEN 141
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NAVL KVS+++E ++
Sbjct: 142 GMGPSGFVNAVLRKVSQRDEQLWIDELAP 170
>gi|323344945|ref|ZP_08085169.1| NusB family protein [Prevotella oralis ATCC 33269]
gi|323094215|gb|EFZ36792.1| NusB family protein [Prevotella oralis ATCC 33269]
Length = 329
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ L D ++ + + +S
Sbjct: 175 EIVDTFVLKTIKRFDPKNKSKQELLPEYKDM--EDKDFACKLFRATILNADQYQHYMSET 232
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W FSRL + I++ + E++ ++PV V I+EYV +A + +IN +L
Sbjct: 233 -SRNWDFSRLAYMDVVIMQIAIAEMLTFPNIPVSVTINEYVDLAKLYSTPKSGGYINGML 291
Query: 151 DKVSR 155
D ++R
Sbjct: 292 DSIAR 296
>gi|299140507|ref|ZP_07033645.1| NusB family protein [Prevotella oris C735]
gi|298577473|gb|EFI49341.1| NusB family protein [Prevotella oris C735]
Length = 321
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+++ + I +E L D ++ R + + +S
Sbjct: 175 EVVDTFVLKTIKRFEQENKSMQELLPEYKD--EEDKDFARKLFRATILNADQYQRYMSEA 232
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W F RL + I++ + E++ ++P+ V I+EYV +A + +IN +L
Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTPKSGGYINGML 291
Query: 151 DKVS 154
D ++
Sbjct: 292 DSIA 295
>gi|91763232|ref|ZP_01265196.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717645|gb|EAS84296.1| Antitermination protein NusB [Candidatus Pelagibacter ubique
HTCC1002]
Length = 134
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 20/143 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ +Q LY + + +RF ++ + ++ G ++R
Sbjct: 12 RVIIIQKLYGNFFN----DDTDLTFPKHRF----------------KKFIKDVVLGTIER 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ I + L+E + LD + I+++ + E + V ++II EY+ ++ F
Sbjct: 52 DEVIKEEVRKYLSEDIELTNLDQVFQVIVKSAIFEFLYKPKVSSKIIIKEYLNASNFFLE 111
Query: 140 GDEPKFINAVLDKVSRKEEIKRS 162
+ K++NA+LDK+++K +
Sbjct: 112 DGQTKYLNAILDKIAKKIRTTNA 134
>gi|330002246|ref|ZP_08304257.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
gi|328537385|gb|EGF63634.1| ribosomal RNA small subunit methyltransferase B [Klebsiella sp. MS
92-3]
Length = 431
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 8 RSLAAQAIEQVVEKGQSLSNVLPPLQQ-------------KVSDKDKALLQELCFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ LIS + + + + ++ G+ +L+ +P ++E V A
Sbjct: 55 LSQLEWLISKLMARPMTGKQ--RTVHFLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEA 131
>gi|312143910|ref|YP_003995356.1| sun protein [Halanaerobium sp. 'sapolanicus']
gi|311904561|gb|ADQ15002.1| sun protein [Halanaerobium sp. 'sapolanicus']
Length = 444
Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ ++ + D F I +GV+ K ++D +I S ++D + LR G+
Sbjct: 26 DSFLQEITDQRDKNLFTEIFYGVIRNKLYLDHIIKHF--SNKSLEKMDKEVLLGLRIGIY 83
Query: 114 ELIECHSVPVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEE 158
+L+ +P I E V F+N +L V+RK +
Sbjct: 84 QLLFLDKIPARAAIYESVEAVKLMLKNKGAAAFVNGILRNVNRKID 129
>gi|291543913|emb|CBL17022.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
sp. 18P13]
Length = 434
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y A +S + +GV++R +D ++S + +LD + +
Sbjct: 21 YSNIALDRALRDSDLNPQQKSRVSALYYGVIERLPELDYVLSRYSKK--PPEKLDPTVRN 78
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+LR GV +L +P ++E V Y F+NAVL R +
Sbjct: 79 LLRCGVYQLAHMR-IPDNAAVNECVNACKKLRYTSASGFVNAVLRGFVRDGK 129
>gi|84496669|ref|ZP_00995523.1| NusB antitermination factor [Janibacter sp. HTCC2649]
gi|84383437|gb|EAP99318.1| NusB antitermination factor [Janibacter sp. HTCC2649]
Length = 136
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R +R A+ L++ + + TE++ E V E+ +
Sbjct: 1 MGARTKSRRRAIDLLFEAEQRQVNATELLKERLA-----------TPVTEAPLNEFTANL 49
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ GV+D I+ L+ + ++ WS R+ + +ILR G E++ VP V I+E V
Sbjct: 50 VTGVVDNWSQINDLL-ATYSQGWSVERMPAVDRAILRVGAFEVLFGE-VPEGVAIAEAVA 107
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
IA + D PKF+N +L +++
Sbjct: 108 IATELSTDDSPKFVNGLLARLA 129
>gi|258545467|ref|ZP_05705701.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
gi|258519300|gb|EEV88159.1| ribosomal RNA small subunit methyltransferase B [Cardiobacterium
hominis ATCC 15826]
Length = 418
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA+ I +R +S D ++ +++G +
Sbjct: 2 KARQAAL-------------HTIDGVINQHRTLNTLLAQDKSRVSAADQALYQALVYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + + L + + + + L IL G+ +L++ + V I+E V +A
Sbjct: 49 RQYRALSALCAQMM--EKPPATPGHPLAIILNLGLYQLLQMNLGDHGV-INETVNLAPHH 105
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
INA+L +V R+ + +A T
Sbjct: 106 RLARAKGLINAILRRVQRERAHWQQALENAAT 137
>gi|227872150|ref|ZP_03990520.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
F0268]
gi|227842008|gb|EEJ52268.1| possible rRNA (cytosine-5-)-methyltransferase [Oribacterium sinus
F0268]
Length = 449
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + + HG+++R +D +IS + +L ++ LR + +L+
Sbjct: 75 PGLGNREKAFLTRSSHGILERYLQLDYVISLYSSV--KLKKLKPVVLLSLRIAIYQLLFM 132
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+P I+ E V F+NAVL K+ ++E + S +
Sbjct: 133 DKIPEHAIVDEAVKSIKKRKLQGLVPFVNAVLRKIVGEKEEIKKKLASLPKE 184
>gi|323493837|ref|ZP_08098955.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
gi|323311971|gb|EGA65117.1| 16S rRNA methyltransferase B [Vibrio brasiliensis LMG 20546]
Length = 426
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSNALP-------------AAQQTIKPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P + E V
Sbjct: 51 LPRLESIANELMDK--PLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + VS
Sbjct: 108 PRLRGLINAVLRNYQRNQEELDAMAVS 134
>gi|219114260|ref|XP_002176301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402704|gb|EEC42693.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 413
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A +AL I + + S D + R+++
Sbjct: 75 RNARFLAARAL----ITKTGSA-------AFAVDRLESNKHYSTLSTRDRSFARLLVTTT 123
Query: 77 MDRKQHIDLLISSCLTEKWS-FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-- 133
R ID ++ C E S +R+D + + LR G +L+ VP + E V +
Sbjct: 124 ERRLGQIDEVLRQCQKETKSRPNRVDQFVQAALRIGATQLLFLK-VPEHAAVKETVELLR 182
Query: 134 --AHDFFYGDEPKFINAVLDKVSRKEEI 159
KF+NAVL ++SR+ ++
Sbjct: 183 HDPKTTVPESRIKFVNAVLRRISREGDV 210
>gi|330719303|ref|ZP_08313903.1| 16S rRNA methyltransferase B [Leuconostoc fallax KCTC 3537]
Length = 411
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D +++GV+ + + + + +LD + +L + ++
Sbjct: 1 MSDADRRLLTTLVYGVIQHRLTLAYWLEPFVAN----KKLDDWVRELLYTALFQMQYLDK 56
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P + +E + +A + KF+ +L +SRK
Sbjct: 57 IPQHAVFNESIEVAKILGHVGIRKFVTGILHDISRK 92
>gi|322373356|ref|ZP_08047892.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
C150]
gi|321278398|gb|EFX55467.1| ribosomal RNA small subunit methyltransferase B [Streptococcus sp.
C150]
Length = 443
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G Y A +S D +++G
Sbjct: 9 KKTARGQALEVLEEVFQEG-----------AYSNIALNARLSKSHLTDKDKALVTEMVYG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 58 TVARKITLEWILAHVIEDRDKLEAWVYDLLL---LSLYQLAYLDKIPAHAVVNDAVSIAK 114
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K INAVL K+S
Sbjct: 115 NRGNKKGAEKLINAVLRKLS 134
>gi|297834138|ref|XP_002884951.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
gi|297330791|gb|EFH61210.1| NOL1/NOP2/sun family protein [Arabidopsis lyrata subsp. lyrata]
Length = 525
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V +
Sbjct: 114 VADVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAV-VD 172
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV--SRKEEI 159
E V +A F+N +L K+ ++++
Sbjct: 173 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKDA 205
>gi|89092289|ref|ZP_01165243.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
MED92]
gi|89083377|gb|EAR62595.1| Fmu, rRNA SAM-dependent methyltransferase [Oceanospirillum sp.
MED92]
Length = 432
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 46/139 (33%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QAL + S +E D R + +G +
Sbjct: 6 RTLAAQALTPLLQNKGSLNT-------------KYPAIERRCADKDRGLLRELCYGTLRY 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + + +D+ +++ ++ +P I E V +
Sbjct: 53 YPQLNRVLQLLQNRPFKYKDIDVRALALVGLYQIQH---TRIPAHAAIHETVEACKELNK 109
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +NA+L + R+++
Sbjct: 110 PGAAKLLNAILRRFQREQD 128
>gi|300868307|ref|ZP_07112935.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
6506]
gi|300333687|emb|CBN58119.1| N utilization substance protein B homolog [Oscillatoria sp. PCC
6506]
Length = 210
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
+ + + I+ V + ID L+S+ L + W RL I I+
Sbjct: 97 IALELPETIHLANQEDVRIYALKILGTVSANRPAIDELLSAALVD-WQIDRLPRIDRDIM 155
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
R V E++ +P +V I+E + +A + + +FIN VL + K + + S
Sbjct: 156 RIAVAEIMFLD-LPEQVGINEAIELAKRYSGDEGYRFINGVLRRAVEKIKPESS 208
>gi|254295350|ref|YP_003061373.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
gi|254043881|gb|ACT60676.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
Length = 487
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 24/169 (14%)
Query: 4 QDNKKDLKLSHRRG---------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
K S +R +R AA L +I G E ++ + +
Sbjct: 39 NPRSKPQDNSTKRTGGKLPQNGWQSRRAAADILMRIVHEGADMDEALASSKFF------- 91
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D + R I + ID + + L ++D + S+LR G +
Sbjct: 92 ----DELEGPDRGFARAIASAALRAFGRIDDALETYLDR--PLEKIDPAVLSLLRVGCAQ 145
Query: 115 LIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRS 162
L + + V A + +NA+L + R+ E S
Sbjct: 146 LWVLKAPSYAA-VDATVEAARQWKPASRGGGMVNAILRRAGREPEAYES 193
>gi|22331043|ref|NP_187924.2| NOL1/NOP2/sun family protein / antitermination NusB
domain-containing protein [Arabidopsis thaliana]
gi|18176252|gb|AAL60011.1| putative sun protein fmu [Arabidopsis thaliana]
gi|21436219|gb|AAM51397.1| putative sun protein fmu [Arabidopsis thaliana]
gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein [Arabidopsis thaliana]
gi|332641785|gb|AEE75306.1| ribosomal RNA small subunit methyltransferase B [Arabidopsis
thaliana]
Length = 523
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V +
Sbjct: 112 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAV-VD 170
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV--SRKEEI 159
E V +A F+N +L K+ ++++
Sbjct: 171 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKDA 203
>gi|15807162|ref|NP_295891.1| sun protein [Deinococcus radiodurans R1]
gi|6459968|gb|AAF11717.1|AE002050_3 sun protein, putative [Deinococcus radiodurans R1]
Length = 439
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 22/155 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +++ + + AR AV+ L ++ + +
Sbjct: 24 MTRPPDRRP-QPFNP---AREVAVRVLIRVLAGEGFAATALDSALQ-----------SAR 68
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D I++G + +D +S LT + ++L AG E +
Sbjct: 69 LPGRDAGLATHIVYGTLRHFPSLDAALSPLLTG-----KTHPKARALLLAGAFEKLHLD- 122
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P+ +++EYV +A D P +NAVL +V +
Sbjct: 123 TPLHAVVNEYVNLARDARLAP-PGLVNAVLRRVEK 156
>gi|10172606|dbj|BAB01410.1| unnamed protein product [Arabidopsis thaliana]
Length = 531
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ G + ++++D LI S + +F ++ +L ILR GV E+I+ P V +
Sbjct: 120 VTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAV-VD 178
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV--SRKEEI 159
E V +A F+N +L K+ ++++
Sbjct: 179 ENVRLAKVALRPGAGDFVNGILRKLVSLKEKDA 211
>gi|15605567|ref|NP_220353.1| transcription antitermination protein NusB [Chlamydia trachomatis
D/UW-3/CX]
gi|7387974|sp|O84839|NUSB_CHLTR RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|3329303|gb|AAC68429.1| Transcription termination factor [Chlamydia trachomatis D/UW-3/CX]
gi|296436388|gb|ADH18562.1| transcription antitermination protein NusB [Chlamydia trachomatis
G/9768]
gi|296437319|gb|ADH19489.1| transcription antitermination protein NusB [Chlamydia trachomatis
G/11222]
gi|296438247|gb|ADH20408.1| transcription antitermination protein NusB [Chlamydia trachomatis
G/11074]
gi|297140748|gb|ADH97506.1| transcription antitermination protein NusB [Chlamydia trachomatis
G/9301]
Length = 168
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M ++ S + R +QALY ++I ++S T E
Sbjct: 4 MASDKACAPVRASRPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------E 52
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
+ + + + + + +D L+ + + + +RL +I +ILR + E +
Sbjct: 53 ASVSKKNAAYALMFCRAIRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQN 111
Query: 118 --CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
C VPV V+I+E + F Y + I AVL +
Sbjct: 112 QDCCPVPVAVLIAETTRLIKKFSYSEGSSLILAVLGSI 149
>gi|260891342|ref|ZP_05902605.1| transcription antitermination factor NusB [Leptotrichia hofstadii
F0254]
gi|260858725|gb|EEX73225.1| transcription antitermination factor NusB [Leptotrichia hofstadii
F0254]
Length = 138
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ ++I + I+ + E++ ++++ R I
Sbjct: 3 RREIREEIFKLLFEYELIDNDIEKRIN----------ETIAEENLKRDEEIDFLRSYITE 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ K + I L W++ RL I +L+ E+ E+ I+E + IA
Sbjct: 53 IIENKDILTDRIRQVLDG-WTYERLGTIEKVLLKISFYEITIKDIG-YEIAINEVLEIAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
+ Y D F+N +L K+ + + ++
Sbjct: 111 KYSYNDTKDFLNGILAKLVQNIKDEKQ 137
>gi|78185142|ref|YP_377577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
CC9902]
gi|78169436|gb|ABB26533.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
CC9902]
Length = 445
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L Q G + + D + +G + +
Sbjct: 12 RQLAWKVL-QAVAAGAYADVALERCLR-----------DHPLRGPDRGLATELAYGAIRQ 59
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + S+ L +L G+ +L+ +P ++ V +A
Sbjct: 60 RRVLDGWLDRMGKV--PASKQPPKLRWLLHVGLYQLLLMERIPSAAAVNTTVELAKVSGL 117
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
G +N +L V R E +SA
Sbjct: 118 GRLAPVVNGLLRGVLRAHEAGEMLELSA 145
>gi|226306504|ref|YP_002766464.1| rRNA methyltransferase [Rhodococcus erythropolis PR4]
gi|226185621|dbj|BAH33725.1| putative rRNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 482
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 23/169 (13%)
Query: 8 KDLKLSHRRG---------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
K+ K + RLAA + E + Y L +
Sbjct: 23 KNTKPKQAKRPDPATAGLDQPRLAA-----------RDVLRAVRERDAYANLVLPGLLRD 71
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + +G + +D +I+ +D L +LR G +L+
Sbjct: 72 RKLDARDAALATELAYGAARAQGLLDAVIA--HAAGRPIEEIDGTLLDVLRLGSYQLLRT 129
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P ++ V + F+NAVL +VS + + + ++
Sbjct: 130 RVAP-HAAVATSVDLVRAENGQGRAGFVNAVLRRVSERTQDEWVELLAP 177
>gi|326773324|ref|ZP_08232607.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
viscosus C505]
gi|326636554|gb|EGE37457.1| ribosomal RNA small subunit methyltransferase B [Actinomyces
viscosus C505]
Length = 515
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 15/145 (10%)
Query: 11 KLSHRRGI-ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R AR A++ L + + + EL + D +
Sbjct: 41 RSARGRSDSARQVALEVL-----------TRVRRDDAFANLLLPELLETADLDRRDAGFA 89
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ +G + + D +I++C R+D + +LR G +L+ +S
Sbjct: 90 TALTYGTLRLRGRYDAMIAACTDR--PLERIDPAVLDVLRLGAHQLMGMRVAQ-HAAVST 146
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVS 154
V +A F+NAV+ ++S
Sbjct: 147 TVDLATTSCGRGAATFVNAVMRRLS 171
>gi|317056629|ref|YP_004105096.1| NusB antitermination factor [Ruminococcus albus 7]
gi|315448898|gb|ADU22462.1| NusB antitermination factor [Ruminococcus albus 7]
Length = 137
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R AA ++ + I + + + +V++ +
Sbjct: 1 MAGRREVRQAAFLLSFEKLFMDDELENIFNSAQELGEFISVDDEVKA------------L 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G+ +++ +D +IS ++K + SR+ + S+LR + E + VPV V ISE V
Sbjct: 49 VRGIFEKQDELDSIISKY-SDKRAVSRIPKVDLSVLRLAIYEALYDDKVPVNVAISEAVS 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+ + + F+N +L ++ +
Sbjct: 108 LTEKYALEPDIAFVNGLLGSFAKDIKKDE 136
>gi|153807762|ref|ZP_01960430.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
gi|149129371|gb|EDM20585.1| hypothetical protein BACCAC_02045 [Bacteroides caccae ATCC 43185]
Length = 308
Score = 65.6 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+I+ + I ++ + A+ EL E D E+ R + + + L+S
Sbjct: 176 EIVDTFVLKTIKRFDE-KKGANQELLPEFK-DDEDQEFARRLFRRTILNSDYYRHLVSEN 233
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
T+ W R+ + I++ + E++ ++PV V ++EYV IA + FIN L
Sbjct: 234 -TKNWELDRIAFMDVIIMQTALAEILSFPNIPVSVSLNEYVEIAKLYSTSKSGSFINGTL 292
Query: 151 DKVSRKEEIK 160
D + + + +
Sbjct: 293 DGIVNQLKKE 302
>gi|116072280|ref|ZP_01469547.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
gi|116064802|gb|EAU70561.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp. BL107]
Length = 445
Score = 65.6 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 47/148 (31%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L Q G + + D + +G + +
Sbjct: 12 RQLAWKVL-QAVAAGAYADVALERCLR-----------DHPLQGPDRGLATELAYGAIRQ 59
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + ++ L +L G+ +L+ +P ++ V +A
Sbjct: 60 RRILDGWLDRMGKV--PAAKQPPKLRWLLHVGLYQLLMMERIPSAAAVNTTVELAKVSGL 117
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+N +L V R E + +SA
Sbjct: 118 ARLAPVVNGLLRGVLRAHESGETLELSA 145
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 26/59 (44%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+++ + +LR + +++ VP I E V IA + +N VL + R+
Sbjct: 11 KKVEAWVRVLLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 69
>gi|15644260|ref|NP_229312.1| sun protein [Thermotoga maritima MSB8]
gi|4982078|gb|AAD36579.1|AE001799_11 sun protein [Thermotoga maritima MSB8]
Length = 431
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R RL A + L + + + + V S D +F+ ++ G
Sbjct: 2 RTNVRLLAYRLLRKYE-------------KEKFISREDVDSVLSFLDDRDRRFFKELVWG 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ +++ +D I+ + + LR G +L+ +SVP +SE V +
Sbjct: 49 VVRKEELLDWYINQ----LLKKKDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK 104
Query: 136 DFFYGDEPKFINAVLDKV 153
+ K +NAVL ++
Sbjct: 105 ---NENFKKLVNAVLRRL 119
>gi|302341793|ref|YP_003806322.1| sun protein [Desulfarculus baarsii DSM 2075]
gi|301638406|gb|ADK83728.1| sun protein [Desulfarculus baarsii DSM 2075]
Length = 443
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A+ L Q++ +++S D + H V+
Sbjct: 4 RLTALDVLVQLESSPKHLDKLLSR----------AFQRHPAAQARDKAMATNLTHTVLRH 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L++ ++ ++LD + + LR G EL+ + P + V
Sbjct: 54 RAWLDHLLTPLVSR--PLAKLDAPVRAALRLGAAELVVL-ATPAHAAVGATVEAVKAGPA 110
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCV 165
+N VL ++R
Sbjct: 111 AKASGLVNGVLRALTRALPAAAQAEP 136
>gi|123968018|ref|YP_001008876.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
gi|123198128|gb|ABM69769.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. AS9601]
Length = 438
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA + L ++ S + + Y+F +D+ + + G +
Sbjct: 8 RKAAWEILLKVSSGDFSDHALEKVLKNYQF------------NPLDIAFITELSFGCIRY 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + + T K + + L +L G+ +L++ +P I+ V +A
Sbjct: 56 RKFLD--LWTDHTSKITHKKQPPKLRWLLHIGLYQLLKMDKIPFPAAITTTVEVAKKTDL 113
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
+NA+L SRK E K
Sbjct: 114 NGLAGTVNAILRNASRKLEQK 134
>gi|332705392|ref|ZP_08425470.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
gi|332355752|gb|EGJ35214.1| transcription antitermination factor NusB [Lyngbya majuscula 3L]
Length = 209
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ II V R+ ID +++ L + W RL I ILR V E+ +P V
Sbjct: 113 RSYTLEIIKAVSRRQLEIDQMLNQSLKD-WQLKRLPRIDRDILRMAVAEIAFL-GIPDRV 170
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDK 152
I+E V +A + + +FIN VL +
Sbjct: 171 AINEAVELAKRYSDEEGHRFINGVLRR 197
>gi|284044527|ref|YP_003394867.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
gi|283948748|gb|ADB51492.1| NusB antitermination factor [Conexibacter woesei DSM 14684]
Length = 133
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 27/139 (19%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
ALYQ D+ G + + D F + +Q
Sbjct: 3 ALYQHDLTGRPLEQTL---------------------PKDAANFTRALAQAALARQAEFD 41
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIE------CHSVPVEVIISEYVCIAHDFFY 139
+ S E W+ R+ + SILR +LE++ +P E I E + A +
Sbjct: 42 ALISRHAEGWTLQRIAPLERSILRVSLLEMLHPGDVPAERPIPPEGAIDEAIETAKAYCG 101
Query: 140 GDEPKFINAVLDKVSRKEE 158
D P F+N VL + R E
Sbjct: 102 ADAPGFVNGVLAAILRAER 120
>gi|269127209|ref|YP_003300579.1| Fmu (Sun) domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268312167|gb|ACY98541.1| Fmu (Sun) domain protein [Thermomonospora curvata DSM 43183]
Length = 471
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 20/170 (11%)
Query: 5 DNKKDLKLSHRRG------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
+ + R + R A + + + ++ R
Sbjct: 8 TRRAGRRPGAPRRTGRPQDLVRRTAFEVIRAVQTRDAYANLLLPVRLRER---------- 57
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + +G + + D ++ C R+D L +LR G +L+
Sbjct: 58 -GLTGRDAALATELTYGTLRGRGTYDAVLEVCSDR--PLRRIDEPLLDVLRLGAHQLLGT 114
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+P + V +A F NAVL KV+ ++ V+
Sbjct: 115 R-IPPHAAVGTAVELARSVVGAGRAGFANAVLRKVATRDLKAWLDIVAPP 163
>gi|309776537|ref|ZP_07671518.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 3_1_53]
gi|308915714|gb|EFP61473.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 3_1_53]
Length = 415
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 18/147 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + D I++G +
Sbjct: 2 NARGIAFDML-------------KDIFLHKTYSNLLLRKGLNQAKAQDKGLITQIVYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ C+ + S +C +L V +L+ +P II++ V I
Sbjct: 49 QNYRLCRYQWMDCVKKLPSDE-----VCIVLDMSVYQLLYMDKLPAYAIINDAVDITKKQ 103
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ K +NAVL V R+ E + +G
Sbjct: 104 IHVKMAKLVNAVLHAVERRGEREVTGK 130
>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
Length = 440
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A ++ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELIKHDLKLADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 FF--YGDEPKFINAVLDKVSRKEEIKRS 162
+ K +N +L + R+ +I
Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKILPP 134
>gi|300775935|ref|ZP_07085795.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505485|gb|EFK36623.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 301
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
R ++ ++ + D + ++ ++ ++ + + L E W R+ ++ I
Sbjct: 190 REDEESRTLIKMIKDEDDKTFAAKLLKDTLNNWENNEKKLEERL-ENWDLERVSLMDKVI 248
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
L + EL P VII+EY+ IA F FIN +LDK + +
Sbjct: 249 LSTAIAELDNFAFTPSRVIINEYIEIAKVFATDRSNIFINGILDKYCKDQN 299
>gi|148240114|ref|YP_001225501.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
gi|147848653|emb|CAK24204.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 7803]
Length = 447
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 45/155 (29%), Gaps = 19/155 (12%)
Query: 10 LKLSHRRG-----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ S R +R A++ L + G + +
Sbjct: 1 MSESPSRSETPGLASRRVALEVL-EAVAAGAYADVALERALR-----------QHPLQAA 48
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + +G + +Q +D + + L +L G+ +++ +P
Sbjct: 49 DRGLATELAYGAIRWRQWLDAWLDKLGKV--PARKQPPRLRWLLHLGLYQVLRMERIPAA 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++ V +A +N +L R E
Sbjct: 107 AAVNTTVELAKRGKLARLAPVVNGLLRAALRAREA 141
>gi|227499439|ref|ZP_03929550.1| possible transcription antitermination protein NusB [Anaerococcus
tetradius ATCC 35098]
gi|227218501|gb|EEI83744.1| possible transcription antitermination protein NusB [Anaerococcus
tetradius ATCC 35098]
Length = 133
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 15 RRGIARLAAVQALYQIDIIG-CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
R R + +YQ I +I++ D ++ + I
Sbjct: 2 NRVEQREWVFKLIYQDMISKIEDVDKILA-----------------ELNLADEDFIKASI 44
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+D+ I+ + S L R+ +L SIL + E+ +PV V I+E V +
Sbjct: 45 SSYLDKLTLIEEKVDSNLDS--KHKRIAKVLRSILYLSINEIYFMD-IPVSVSINEAVNL 101
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
A + ++ K +N++L + RK+ ++S
Sbjct: 102 AKKYSDEEDYKLVNSILGSIVRKDGNEKS 130
>gi|257059341|ref|YP_003137229.1| transcription antitermination protein NusB [Cyanothece sp. PCC
8802]
gi|256589507|gb|ACV00394.1| NusB antitermination factor [Cyanothece sp. PCC 8802]
Length = 235
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E+ +I V R+ ID + + L + W +RL I ILR V E++ +P +V
Sbjct: 141 REYALELIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKV 198
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I+E + +A + + +FIN VL + + + I +
Sbjct: 199 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 235
>gi|329943115|ref|ZP_08291889.1| transcription antitermination factor NusB [Chlamydophila psittaci
Cal10]
gi|332287697|ref|YP_004422598.1| transcription antitermination factor NusB [Chlamydophila psittaci
6BC]
gi|313848271|emb|CBY17272.1| putative transcription termination-related protein [Chlamydophila
psittaci RD1]
gi|325506888|gb|ADZ18526.1| transcription antitermination factor NusB [Chlamydophila psittaci
6BC]
gi|328814662|gb|EGF84652.1| transcription antitermination factor NusB [Chlamydophila psittaci
Cal10]
gi|328914950|gb|AEB55783.1| transcription antitermination factor NusB [Chlamydophila psittaci
6BC]
Length = 164
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +Q LY +D+ S ++ + + L
Sbjct: 21 PKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEILA------- 73
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
K L+ + + SF +L ++ ++LR + E + ++I+E +
Sbjct: 74 -----KSSELDLLIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLV 128
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F Y + F++AVL+ + R
Sbjct: 129 KKFSYVEACSFVHAVLNDIFR 149
>gi|118463294|ref|YP_882553.1| Fmu protein [Mycobacterium avium 104]
gi|118164581|gb|ABK65478.1| Fmu protein [Mycobacterium avium 104]
Length = 439
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+SE + Y A L E D + + +G + +D +I +
Sbjct: 4 AVSERDAYANLALPALLRERGITGRDAAFATELTYGTCRTRGLLDAVIGA--AAGRPPEA 61
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+D +L +LR G +L+ V +S V A F F+N VL +++ ++E
Sbjct: 62 IDPVLLDLLRLGTYQLL-RTRVDAHAAVSTTVEQAAIEFDSARAGFVNGVLRRIAGRDER 120
Query: 160 KRSGCVSA 167
++
Sbjct: 121 SWVQELAP 128
>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
Length = 438
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 45/148 (30%), Gaps = 17/148 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A++ L + ++Y A ++ D I++G
Sbjct: 2 SNARTVALETL-----------IKVFNQKSYSNIALNNELIKHDLKLADKALATRIVYGT 50
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ K ++ + D L +L + VP I E +A
Sbjct: 51 IQYKIFLEYQL----KPLIKTKLRDSFLKPLLLMSAYQYFFLEKVPANAIFDEANKLAKK 106
Query: 137 FF--YGDEPKFINAVLDKVSRKEEIKRS 162
+ K +N +L + R+ +I
Sbjct: 107 YSKRNSGSYKLVNGILRALERQGKILPP 134
>gi|255311673|ref|ZP_05354243.1| transcription antitermination protein NusB [Chlamydia trachomatis
6276]
gi|255317974|ref|ZP_05359220.1| transcription antitermination protein NusB [Chlamydia trachomatis
6276s]
Length = 168
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M ++ S + R +QALY ++I ++S T E
Sbjct: 4 MASDKACAPVRASRPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------E 52
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
+ + + + + + +D L+ + + + +RL +I +ILR + E +
Sbjct: 53 ASVSKKNAAYALMFCRAIRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQN 111
Query: 118 --CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
C VPV V+I+E + F Y + I AVL +
Sbjct: 112 QDCCPVPVAVLIAETARLIKKFSYSEGSSLILAVLGSI 149
>gi|288957078|ref|YP_003447419.1| Sun protein [Azospirillum sp. B510]
gi|288909386|dbj|BAI70875.1| Sun protein [Azospirillum sp. B510]
Length = 431
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L + + ++ + A D + R+++ V+
Sbjct: 7 AARGVALDLLRDVLRKSVPFDDA---FDAHPELA--------SLQPRDRGFVRLLVATVL 55
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R ID +I + L + + + LR G +L+ + P + V +A
Sbjct: 56 RRLGQIDEMIQASLAKPG-LPKAAIHDM--LRLGTAQLVFL-NTPAHAAVDTAVELAAAR 111
Query: 138 FYGDEPKFINAVLDKVSRK 156
INAVL ++ R+
Sbjct: 112 NAAPYKGLINAVLRRIGRE 130
>gi|295396524|ref|ZP_06806684.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
mcbrellneri ATCC 49030]
gi|294970642|gb|EFG46557.1| ribosomal RNA small subunit methyltransferase B [Brevibacterium
mcbrellneri ATCC 49030]
Length = 494
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ R+ A + L +D+ Y + D +
Sbjct: 36 RPKANPRVIAWEVLRDVDLND-----------AYANLLLPAKLERTRMSGPDAAMCTEMT 84
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+G + ++ D +I +++ + + +R G +++ +SE V +
Sbjct: 85 YGTLRARRFYDAVIEKVSDR--PVDQIEAAVLNAMRLGAHQVLAMRVAD-HAAVSETVGV 141
Query: 134 ----AHDFFYGDEPKFINAVLDKVSRKEEIKR 161
A F+NAVL +++ K +
Sbjct: 142 ISKNADTKIANRAAGFVNAVLRRITEKSREEW 173
>gi|170289195|ref|YP_001739433.1| sun protein [Thermotoga sp. RQ2]
gi|170176698|gb|ACB09750.1| sun protein [Thermotoga sp. RQ2]
Length = 431
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R RL A + L + + + + V S D +F+ ++ G
Sbjct: 2 RTNVRLLAYRLLRKYE-------------KEKFISREDVDSVLSFLDDRDRRFFKELVWG 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ +++ +D I+ + + LR G +L+ +SVP +SE V +
Sbjct: 49 VVRKEELLDWYINQ----LLKKKDVPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK 104
Query: 136 DFFYGDEPKFINAVLDKV 153
+ K +NAVL ++
Sbjct: 105 ---NENFKKLVNAVLRRL 119
>gi|255636077|gb|ACU18383.1| unknown [Glycine max]
Length = 289
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 46/192 (23%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL-------------- 62
AR A+ +Y + G + + R A + + E +
Sbjct: 94 RAARELALSIIYAACLEGMDPVRLFEKRMNARREAGYKFNEERLLEYNHMSFGGPPVTVG 153
Query: 63 --------------------------------HVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+ L + + ++ V D L+I+
Sbjct: 154 SDEEANELLRHIEEESAIEAEVLTAPPKLVYNKLILRFTKKLLVAVRDTWDSHVLVINKI 213
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W IL + + +E +++I+E V +A F G P+ IN L
Sbjct: 214 APQNWKNEPAAKILELSILHLAMSEMEVLETRHQIVINEAVDLAKRFCDGAAPRIINGCL 273
Query: 151 DKVSRKEEIKRS 162
R+ E++ S
Sbjct: 274 RTFFRELELEAS 285
>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|282933871|ref|ZP_06339219.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 208-1]
gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|281301960|gb|EFA94214.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 208-1]
Length = 437
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
++Y + + E+ D + +++G + + ++ + L K + L
Sbjct: 20 KSYSNLSLSHALNENNLSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLK----EDYL 75
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162
+L V +LI + VP ++ E +A DF + F +N +L R+ ++ S
Sbjct: 76 KPLLLMSVYQLIFLNRVPNRAVLDEANKLAKDFGKKNSSGFRLVNGILRSFLRRGQVLPS 135
>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 438
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 51/153 (33%), Gaps = 16/153 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
++RLAA + L + S I + Y D + G +
Sbjct: 7 LSRLAAWEILQTVGRGAYSDIAIDHSFRKYSLSI------------ADRALATELACGAI 54
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ +D I + +L +L G+ ++ +PV ++ V +A
Sbjct: 55 RQRLVLDCWIDCLAKVSA--EKQPPLLRWLLHVGLYQIFYMDRIPVSAAVNTTVELAKKK 112
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR--SGCVSAI 168
+NA+L + R ++ + G +
Sbjct: 113 NLKSLAPVVNAILREAIRARDLGKELPGLIEPQ 145
>gi|269218525|ref|ZP_06162379.1| B-like utilization substance protein [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211636|gb|EEZ77976.1| B-like utilization substance protein [Actinomyces sp. oral taxon
848 str. F0332]
Length = 171
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 11/171 (6%)
Query: 1 MTIQDNKKDLK-LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M Q ++ K R R A+ +++ D G + E V S
Sbjct: 1 MDEQSKRRRRKDGFTARTKQRNRALDVVFEADERGLLGQGDL-------LALLGERRVVS 53
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
++ I+ + I I +E W+ SR++ + SILRA EL+
Sbjct: 54 TSQSPIRDFGASIVEAYAENADDI-DTIVEAASEDWAMSRMNAVDRSILRAAAAELVYVG 112
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ V I E+ +A ++ F+ VL++V+ + +++
Sbjct: 113 TDRFHV-IPEWASLAREYSTERSVGFVMGVLNRVA-DIRARELAGGRELSE 161
>gi|154243996|ref|YP_001414954.1| sun protein [Xanthobacter autotrophicus Py2]
gi|154158081|gb|ABS65297.1| sun protein [Xanthobacter autotrophicus Py2]
Length = 471
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+ AV L Q+ G + + + + D I+ +
Sbjct: 46 AARILAVDGLEQVLRHGAALEDALD--------------ADVALDPRDRALAYRILATSL 91
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + LI+ + + L S+L AG +++ VP + V +A
Sbjct: 92 RRIGTLRALIAKLMERG--LPKSAPRLESVLLAGATQILFMD-VPNHAAVGLCVDVARAD 148
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+NAVL +++R+ +
Sbjct: 149 RNTAGFAGLVNAVLRRLTREADA 171
>gi|62185353|ref|YP_220138.1| transcription antitermination protein NusB [Chlamydophila abortus
S26/3]
gi|62148420|emb|CAH64187.1| putative transcription termination-related protein [Chlamydophila
abortus S26/3]
Length = 164
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +Q LY +D+ S ++ + + L
Sbjct: 21 PKQKMREIVLQMLYALDMDPMSEESLVPLLMSETAVTQKHASSALNFSKEILA------- 73
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
K L+ + + SF +L ++ ++LR + E + ++I+E +
Sbjct: 74 -----KSSELDLLIAQTVKNTSFEKLTLMEKNVLRLTLYEHFHGQPINTAILIAEATRLV 128
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F Y + F++AVL+ + R
Sbjct: 129 KKFSYVEACSFVHAVLNDIFR 149
>gi|281423250|ref|ZP_06254163.1| NusB family protein [Prevotella oris F0302]
gi|281402586|gb|EFB33417.1| NusB family protein [Prevotella oris F0302]
Length = 319
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+++ + I +E L D ++ R + + +S
Sbjct: 175 EVVDTFVLKTIKRFEQENTSMQELLPEYKD--EEDKDFARKLFRATILNADQYQRYMSEA 232
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W F RL + I++ + E++ ++P+ V I+EYV +A + +IN +L
Sbjct: 233 -SRNWDFGRLAYMDVVIMQIAIAEMLTFPNIPISVTINEYVDLAKLYSTQKSGGYINGML 291
Query: 151 DKVS 154
D ++
Sbjct: 292 DSIA 295
>gi|308234576|ref|ZP_07665313.1| NusB/RsmB/TIM44 [Atopobium vaginae DSM 15829]
gi|328944365|ref|ZP_08241828.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
gi|327491080|gb|EGF22856.1| tRNA and rRNA cytosine-C5-methylase [Atopobium vaginae DSM 15829]
Length = 537
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R A +AL + + + ++ + E + + ++ GV+
Sbjct: 9 SRTVAFKALCALRKNTTYAQDFLKHFDAFCALLQDE-----------KSFVQHVVCGVIS 57
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D +++ + F+ + LR EL+ + V +S+YV +
Sbjct: 58 SQSMVDKILAQYVK---RFAHQPYKVLICLRMATYELVYRQTAAYAV-VSQYVELVR-LV 112
Query: 139 YGDEPKFINAVLDKVS 154
F+NAVL +++
Sbjct: 113 DKRGASFVNAVLHRIA 128
>gi|206901447|ref|YP_002251151.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
gi|206740550|gb|ACI19608.1| ribosomal RNA small subunit methyltransferase B [Dictyoglomus
thermophilum H-6-12]
Length = 430
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A + LY + + E Y + + +++GV
Sbjct: 4 RLKAAEILY-----------DLEKREAYLNLLLRSRLPSYNLSLKEKHFITELVYGVTRW 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K +D + + L + +LR + + + ++E V IA
Sbjct: 53 KTTLDYI----WSRFVKRDNLSLFGRILLRLVAYHIYFLKDTILPIAVNEIVEIAKRKV- 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
E K INAV ++ ++
Sbjct: 108 PKEAKLINAVSRRMVKERN 126
>gi|317124745|ref|YP_004098857.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
gi|315588833|gb|ADU48130.1| Fmu (Sun) domain protein [Intrasporangium calvum DSM 43043]
Length = 501
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A +L E D + +++G D + + ++D +
Sbjct: 52 AYANLALPKLLREKRLHGRDAAFATELVYGATRLSGLYDAI--TTRAAGRPVEQIDPAVL 109
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+R G +++ VP + E V +A F+NAV+ ++S +
Sbjct: 110 DSIRLGAHQVLGMR-VPSHAAVDETVALARQVNGSGAAGFVNAVMRRISER 159
>gi|332653342|ref|ZP_08419087.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
gi|332518488|gb|EGJ48091.1| ribosomal RNA small subunit methyltransferase B [Ruminococcaceae
bacterium D16]
Length = 445
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 14/141 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ L G + A + + + GV+
Sbjct: 3 AREAALLTLNTCQRQGGWSD-----------GALKKQLAAGGLEGREAALATQLCFGVVQ 51
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D IS R++ + LR G+ +++ +P ++ V +
Sbjct: 52 NEMLLDFYISKF--SNIPLRRMESKVVQALRLGLYQMLFLTKIPQSAAVNCSVELTRTHC 109
Query: 139 -YGDEPKFINAVLDKVSRKEE 158
P +NA+L + R
Sbjct: 110 KNPRAPGMVNAILRSLQRNLN 130
>gi|229495644|ref|ZP_04389373.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
gi|229317414|gb|EEN83318.1| NusB family protein [Porphyromonas endodontalis ATCC 35406]
Length = 348
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
E+ + + D ++ + ++ +I+ L W R+ + IL+ +
Sbjct: 236 DEVIIPAYKDEEDTHLAAELLRTTIVHEEEYREIINKNL-RNWDMDRVTDVDMIILQMAL 294
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
EL+ ++P V ++EY+ +A + + F+N +LD + +R
Sbjct: 295 AELLSFPTIPTTVTLNEYIELAKIYSTAESGVFVNGLLDSALHQLRNER 343
>gi|139436934|ref|ZP_01771094.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
25986]
gi|133776581|gb|EBA40401.1| Hypothetical protein COLAER_00067 [Collinsella aerofaciens ATCC
25986]
Length = 118
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 99 RLDMILCSILRAGVLELIEC--HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
R+ ++LR V E+ V ++I+E V +A + F+N VL K++R
Sbjct: 2 RMPGADRNLLRIAVYEMRFLTDEEVSDAIVINEAVELAKAYGTDQSASFVNGVLGKIARS 61
Query: 157 EEI 159
EE+
Sbjct: 62 EEL 64
>gi|119943873|ref|YP_941553.1| sun protein [Psychromonas ingrahamii 37]
gi|119862477|gb|ABM01954.1| sun protein [Psychromonas ingrahamii 37]
Length = 436
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L Q+ G S + ++ V+ D +V+ +GV+
Sbjct: 4 RALAAKILNQVVEQGQSLSNVLP-------------PVQQDLSPKDKALLQVLCYGVLRT 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D S + + L ++ G +L+ +P + E V A +
Sbjct: 51 LPRLDFFCRSLMDKA--LKGKQRDLHFLILVGFYQLLYTR-IPSHAAVGETVNGAKELKK 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
+N VL R++E
Sbjct: 108 QALKGMVNGVLRNFLREQE 126
>gi|116628135|ref|YP_820754.1| RNA-binding protein [Streptococcus thermophilus LMD-9]
gi|116101412|gb|ABJ66558.1| tRNA and rRNA cytosine-C5-methylase [Streptococcus thermophilus
LMD-9]
Length = 442
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G + ++ + D D I++G
Sbjct: 8 KKTARGQALEVLEEVFQEGAYSNIALNARLSNSCLTD-----------KDKALVTEIVYG 56
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 57 TVARKITLEWILAHVIEDRDKLEAWVYDLLL---LSLYQLAYLDKIPSHAVVNDAVSIAK 113
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 114 NRGNKKGAEKLVNAVLRKLS 133
>gi|148270410|ref|YP_001244870.1| sun protein [Thermotoga petrophila RKU-1]
gi|147735954|gb|ABQ47294.1| sun protein [Thermotoga petrophila RKU-1]
Length = 431
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ RL A + L + + + + V S D +F+ ++ G
Sbjct: 2 KTNVRLLAYRLLRKYE-------------KEKFILREDVDSVLSFLDDKDRRFFKELVWG 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ +++ +D I+ + + LR G +L+ +SVP +SE V +
Sbjct: 49 VVRKEELLDWYINQ----LLKKKDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK 104
Query: 136 DFFYGDEPKFINAVLDKV 153
+ K +NAVL ++
Sbjct: 105 ---NENFKKLVNAVLRRL 119
>gi|91791391|ref|YP_561042.1| sun protein [Shewanella denitrificans OS217]
gi|91713393|gb|ABE53319.1| sun protein [Shewanella denitrificans OS217]
Length = 428
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++ + G S + + + + V D + +GVM +
Sbjct: 5 RALAAKAIFDVLEKGLSLSVALPLQQQH------------VQNGKDKALLAELCYGVMRQ 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +S CL + F IL +L G +L +P +SE +
Sbjct: 53 LPQLDKCVSDCLAK--PFKGKQRILHQLLLVGCYQLYFTR-IPSHAAVSETAEACRQLKF 109
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+E
Sbjct: 110 DGLVKVVNGVLRNIQRQE 127
>gi|83815307|ref|YP_445018.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
gi|83756701|gb|ABC44814.1| ribosomal RNA small subunit methyltransferase B [Salinibacter ruber
DSM 13855]
Length = 427
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 52 DTELDVESVYLHVD---LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D + D R ++ GV +++ +D ++ + ++ L IL
Sbjct: 4 DDAFVDKLTIEDADARTRRQARELVAGVTRQRRWLDFVLGE--AYHGDYDSMEHRLQEIL 61
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
R G+ EL+ S P + EYV +A +N VL + R E
Sbjct: 62 RLGLYELLF-QSTPTHAAVDEYVELAKQALRPGAGNLVNGVLRTIDRDRE 110
>gi|22298329|ref|NP_681576.1| transcription antitermination protein NusB [Thermosynechococcus
elongatus BP-1]
gi|32171633|sp|Q8DKS0|NUSB_THEEB RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|22294508|dbj|BAC08338.1| tll0787 [Thermosynechococcus elongatus BP-1]
Length = 212
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + ++ + + I+ L++ + + W RL + +I+ V+E+
Sbjct: 107 FAHQEEVQAYAIALLRCLQRYQNEIEELVNRSMVD-WQLERLTQLDRAIIEIAVVEMRYL 165
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I+E + +A + +FIN VL ++S + ++
Sbjct: 166 EVAKQ-VAINEAIELAKRYSDEGSHRFINGVLRRISEALDPAQAA 209
>gi|113474580|ref|YP_720641.1| transcription antitermination protein NusB [Trichodesmium
erythraeum IMS101]
gi|119390846|sp|Q118A6|NUSB_TRIEI RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|110165628|gb|ABG50168.1| NusB antitermination factor [Trichodesmium erythraeum IMS101]
Length = 207
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
LY+ +G + I +E + ++ V ++ +D
Sbjct: 81 MLYEAIELGQTAINRIGTAVELPEMLQLTNQLE------VRSYAMEVLTKVNGNRKEVDK 134
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
L+ + + W RL I ILR V E++ V ISE V +A + D KF
Sbjct: 135 LLQESIVD-WQIERLPRIDLDILRIAVAEMMFIGIQKQ-VAISEAVELAKRYSGEDGYKF 192
Query: 146 INAVLDKVSRKEEI 159
IN VL +V K +
Sbjct: 193 INGVLRRVFDKINV 206
>gi|119961729|ref|YP_947575.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
aurescens TC1]
gi|119948588|gb|ABM07499.1| ribosomal RNA small subunit methyltransferase B [Arthrobacter
aurescens TC1]
Length = 516
Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L ++ + Y E D +
Sbjct: 54 RTRRADPARLVAFEVL-----------RAVASEDAYANLVLPARIREHRLDRRDAGFATE 102
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + + D +++ C+ +LD + LR G +L+ VP + + V
Sbjct: 103 LSYGALRGQGTYDAILARCVDR--PLEQLDPAILDALRIGAHQLLSMR-VPAHAALDQTV 159
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A INAVL KV
Sbjct: 160 GLARAVIGAGPSALINAVLRKV 181
>gi|227875402|ref|ZP_03993543.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris ATCC 35243]
gi|269977344|ref|ZP_06184317.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris 28-1]
gi|307700926|ref|ZP_07637951.1| putative ribosomal RNA small subunit methyltransferase B
[Mobiluncus mulieris FB024-16]
gi|227843956|gb|EEJ54124.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris ATCC 35243]
gi|269934647|gb|EEZ91208.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris 28-1]
gi|307613921|gb|EFN93165.1| putative ribosomal RNA small subunit methyltransferase B
[Mobiluncus mulieris FB024-16]
Length = 485
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ RR R A L+++ ++ + + D +
Sbjct: 16 RAKTRRDQPRDTAFWTLHRV-----------AQDDAFANLVLPNEIERHHLNRRDAAFAT 64
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +G + + D +I+ + LD + ++LR G EL+ +
Sbjct: 65 ELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMRVESYAA-VDSA 121
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V +A D +NAVL +VS K + ++
Sbjct: 122 VDLARDRISTGPAGMVNAVLRRVSEKSLSEWLDIITE 158
>gi|312278741|gb|ADQ63398.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
thermophilus ND03]
Length = 440
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G + ++ + D D I++G
Sbjct: 6 KKTARGQALEVLEEVFQEGAYSNIALNARLSNSCLTD-----------KDKALVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 55 TVARKITLEWILAHVIEDRDKLEAWVYDLLL---LSLYQLAYLDKIPSHAVVNDAVSIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 112 NRGNKKGAEKLVNAVLRKLS 131
>gi|156932266|ref|YP_001436182.1| 16S rRNA methyltransferase B [Cronobacter sakazakii ATCC BAA-894]
gi|224493253|sp|A7MPE7|RSMB_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|156530520|gb|ABU75346.1| hypothetical protein ESA_00037 [Cronobacter sakazakii ATCC BAA-894]
Length = 429
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 8 RSLAAQAIEQVVEKGQSLSTVLPPLQ-------------HKVSDKDKALLQELCFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ LI+ ++ + + + ++ G+ +L+ +P ++E V A
Sbjct: 55 LSQLEWLINKLMSRPMTGKQ--RTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R+++
Sbjct: 112 MQFKGLINGVLRQFQRQQDE 131
>gi|213963621|ref|ZP_03391873.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
gi|213953749|gb|EEB65079.1| antitermination protein NusB [Capnocytophaga sputigena Capno]
Length = 302
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 40 IISEYETYR-FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
I+ E++ R + + E+ ++ + + LT W
Sbjct: 171 IVREFKNLRPNPPEKYFTPSLYNNSEEKEFLVDLLKKTALNDAKLKSFVEDKLTN-WDKE 229
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
R+ ++ IL+ + E + S+PV+V I+EY+ +A ++ FIN VL+ V ++
Sbjct: 230 RVAVLDLIILKMAICEFLHFPSIPVKVTINEYLELAKEYSTAKSSLFINGVLNVVHKELS 289
Query: 159 IKR 161
K
Sbjct: 290 EKE 292
>gi|306818715|ref|ZP_07452437.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris ATCC 35239]
gi|304648401|gb|EFM45704.1| ribosomal RNA small subunit methyltransferase B [Mobiluncus
mulieris ATCC 35239]
Length = 485
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 14/157 (8%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ RR R A L+++ ++ + + D +
Sbjct: 16 RAKTRRDQPRDTAFWTLHRV-----------AQDDAFANLVLPNEIERHHLNRRDAAFAT 64
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +G + + D +I+ + LD + ++LR G EL+ +
Sbjct: 65 ELAYGTLRLQGRYDAIIARLVDR--DLGELDADVLTVLRLGCHELLGMRVESYAA-VDSA 121
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
V +A D +NAVL +VS K + ++
Sbjct: 122 VDLARDRISTGPAGMVNAVLRRVSEKSLSEWLDIITE 158
>gi|258647540|ref|ZP_05735009.1| NusB family protein [Prevotella tannerae ATCC 51259]
gi|260852324|gb|EEX72193.1| NusB family protein [Prevotella tannerae ATCC 51259]
Length = 309
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 56/135 (41%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
LY D + ++ + + + + ++ Y D F + + +
Sbjct: 171 LYWNDDKDVVDSFVLKTIKRFTPSSGEKQEILPEYDTEDDHQFALELFQTTIERGDEMRD 230
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ ++ W F RL + I++ + E++ ++P+ V +EY+ IA + +I
Sbjct: 231 LIRNNSKNWEFGRLAFMDVIIMQIALTEMLTFPTIPLNVTFNEYLDIAKIYSTPRSSSYI 290
Query: 147 NAVLDKVSRKEEIKR 161
N +LD V + + ++
Sbjct: 291 NGLLDHVVKYLQAEK 305
>gi|284929125|ref|YP_003421647.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
gi|284809584|gb|ADB95289.1| transcription antitermination factor NusB [cyanobacterium UCYN-A]
Length = 216
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
++ IIH + +K+ +D + + L + W RL I ILR V E++ ++
Sbjct: 113 QDDVQKYAIEIIHSICRKKKELDNQLETVLKD-WQLRRLAKIDQDILRIAVAEIL-LLNI 170
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P +V I+E V +A + D +FIN VL + + ++
Sbjct: 171 PEKVAINEAVELAKRYSDDDGYRFINGVLRRFVDHIKEEK 210
>gi|55821413|ref|YP_139855.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
gi|55823338|ref|YP_141779.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
gi|55737398|gb|AAV61040.1| RNA-binding protein [Streptococcus thermophilus LMG 18311]
gi|55739323|gb|AAV62964.1| RNA-binding protein [Streptococcus thermophilus CNRZ1066]
Length = 443
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A++ L ++ G + ++ + D D I++G
Sbjct: 9 KKTARGQALEVLEEVFQEGAYSNIALNARLSNSCLTD-----------KDKALVTEIVYG 57
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +++ + ++ L + +L +P ++++ V IA
Sbjct: 58 TVARKITLEWILAHVIEDRDKLEAWVYDLLL---LSLYQLAYLDKIPSHAVVNDAVSIAK 114
Query: 136 DFFYGDEP-KFINAVLDKVS 154
+ K +NAVL K+S
Sbjct: 115 NRGNKKGAEKLVNAVLRKLS 134
>gi|139436886|ref|ZP_01771046.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
25986]
gi|133776533|gb|EBA40353.1| Hypothetical protein COLAER_00017 [Collinsella aerofaciens ATCC
25986]
Length = 466
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 16/142 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L + D G +++S + D + + GV
Sbjct: 5 SPARKLALDVLMEADRRGMYARDVLSSRAS-----------AKAIDQRDSAFAARLALGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +D L+ L ++ + LR E++ P V +S+ V +
Sbjct: 54 AATQGILDELLDQFLD---KPKKVAPRVRMALRISAFEMLYL-HTPGRVAVSQGVELVRS 109
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
NAVL KV+ E
Sbjct: 110 -GAKSAAGLANAVLHKVADNVE 130
>gi|281412717|ref|YP_003346796.1| sun protein [Thermotoga naphthophila RKU-10]
gi|281373820|gb|ADA67382.1| sun protein [Thermotoga naphthophila RKU-10]
Length = 431
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ RL A + L + + + + V S D +F+ ++ G
Sbjct: 2 KTNVRLLAYRLLRKYE-------------KEKFILREDVDSVLSFLDDKDRRFFKELVWG 48
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ +++ +D I+ + + LR G +L+ +SVP +SE V +
Sbjct: 49 VVRKEELLDWYINQ----LLKKKDIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVK 104
Query: 136 DFFYGDEPKFINAVLDKV 153
+ K +NAVL ++
Sbjct: 105 ---SENFKKLVNAVLRRL 119
>gi|75764701|ref|ZP_00744117.1| N utilization substance protein B [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74487809|gb|EAO51609.1| N utilization substance protein B [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 107
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL--EWFRVI 72
+R AR A+QALYQ+DI G + ++ VE+ + E+ +
Sbjct: 2 KRRTARERAMQALYQMDITGE---------------LEPKVAVENTLDEGEETNEFLESL 46
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ G ++ K+ ID I L + W R+ ++ SILR V E+ +P V I+E
Sbjct: 47 VVGFVENKEAIDEAIRQNLKK-WKLERISIVDRSILRVAVYEMKYMEEIPHNVTINET 103
>gi|160872609|ref|ZP_02062741.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
gi|159121408|gb|EDP46746.1| ribosomal RNA small subunit methyltransferase B [Rickettsiella
grylli]
Length = 442
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 27/161 (16%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE--SVYLHVDLEWF 69
+S+ R IA IIS + + +T L E S D +
Sbjct: 1 MSNTRRIA------------------AHIISRFLKKKIALNTILFAEVPSGIDVRDRAFI 42
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + +GV+ + L S K S +R D + +++ G+ +L + P + E
Sbjct: 43 QELCYGVIRWYFPLKKL--SSFLLKKSLNRSDQDIYALVLVGLYQLNYLNISP-HAAVYE 99
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V A + IN VL R+ ++G + ++Q
Sbjct: 100 TVQAAKELRKRWAAPLINGVLRSFQRQ----KTGLLKKVSQ 136
>gi|116514375|ref|YP_813281.1| transcription termination factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093690|gb|ABJ58843.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 122
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 11/133 (8%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+QA+Y + + SE E A L + + ++ GV+D++ +
Sbjct: 1 MQAIY---LYNQDPSLTASELENNVKSALD--------LDTLPAYSQELVSGVIDKQAEL 49
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
+S+ L + W RL +IL + E++ + I+E + + +F
Sbjct: 50 RDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSAINEALNLCDEFDDPKSK 109
Query: 144 KFINAVLDKVSRK 156
FIN +L ++
Sbjct: 110 AFINGILANFVQE 122
>gi|330814127|ref|YP_004358366.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
gi|327487222|gb|AEA81627.1| antitermination protein NusB [Candidatus Pelagibacter sp. IMCC9063]
Length = 125
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+G +RL +Q +Y+ + + + +G
Sbjct: 2 KGSSRLIVIQKIYE--------------------KISDSSHEIKFPKSSYIRTVKKVFNG 41
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ +D ++S L+ SF LDMIL IL+A + E++ +P +V++ EY+ +
Sbjct: 42 FFEKEADLDQILSKNLSSNISFKNLDMILKIILKAAIFEVLYMPKIPFKVVVDEYLAVTE 101
Query: 136 DFFYGDEPKFINAVLDKVSR 155
++ + +NAVLD V +
Sbjct: 102 MYYDSSQKGLVNAVLDSVFK 121
>gi|227485064|ref|ZP_03915380.1| possible transcription antitermination protein NusB [Anaerococcus
lactolyticus ATCC 51172]
gi|227236897|gb|EEI86912.1| possible transcription antitermination protein NusB [Anaerococcus
lactolyticus ATCC 51172]
Length = 128
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R R + ++Q I DT+ + + L+ D + I+
Sbjct: 2 KRTDQREWVFKLIFQDTINK---------------IEDTKDLLSNHKLNEDETFIVESIN 46
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ ID ++ + +L ++ SI+ + E+ +PV V I+E V IA
Sbjct: 47 SYKKNFEKIDKILQDNAPKGMP--KLSRVVKSIIYLSINEIYFLD-IPVSVSINEAVNIA 103
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
F D+ K +N +L + R E
Sbjct: 104 KKFSNEDDYKIVNLILGNIVRNEN 127
>gi|76789577|ref|YP_328663.1| transcription antitermination protein NusB [Chlamydia trachomatis
A/HAR-13]
gi|237803264|ref|YP_002888458.1| transcription antitermination protein NusB [Chlamydia trachomatis
B/Jali20/OT]
gi|237805185|ref|YP_002889339.1| transcription antitermination protein NusB [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255349237|ref|ZP_05381244.1| transcription antitermination protein NusB [Chlamydia trachomatis
70]
gi|255503774|ref|ZP_05382164.1| transcription antitermination protein NusB [Chlamydia trachomatis
70s]
gi|255507455|ref|ZP_05383094.1| transcription antitermination protein NusB [Chlamydia trachomatis
D(s)2923]
gi|119390756|sp|Q3KKK7|NUSB_CHLTA RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|76168107|gb|AAX51115.1| N utilization substance protein B [Chlamydia trachomatis A/HAR-13]
gi|231273485|emb|CAX10401.1| Antitermination protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274498|emb|CAX11294.1| Antitermination protein [Chlamydia trachomatis B/Jali20/OT]
gi|289525878|emb|CBJ15360.1| Antitermination protein [Chlamydia trachomatis Sweden2]
gi|296435464|gb|ADH17642.1| transcription antitermination protein NusB [Chlamydia trachomatis
E/150]
gi|296439181|gb|ADH21334.1| transcription antitermination protein NusB [Chlamydia trachomatis
E/11023]
Length = 168
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 1 MTIQDNKKDLKLSHR--RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
M ++ S + R +QALY ++I ++S T E
Sbjct: 4 MASDKACAPVRASRPFPKQKLRELVLQALYALEIDPEGEDSLVSLLMT-----------E 52
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE- 117
+ + + + + + +D L+ + + + +RL +I +ILR + E +
Sbjct: 53 ASVSKKNAAYALMFCRAIRANQPDLDALLDATI-RTTTLARLTIIERNILRMMLFEHQQN 111
Query: 118 --CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
C VPV ++I+E + F Y + I AVL +
Sbjct: 112 QDCCPVPVAILIAETTRLIKKFSYSEGSSLILAVLGSI 149
>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
gi|158432588|gb|EDP10877.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
Length = 415
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 20/152 (13%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L +I I + ++ D I++G +
Sbjct: 2 NARAYAFALLKEICIDEGYSNLLLRNKLQ-------------SVDPKDKALVTQIVYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILR-AGVLELIECHSVPVEVIISEYVCIAHD 136
+ + S + ++L V +L+ +P +I E V I
Sbjct: 49 QNYRLVRYQWQSY------VKKEPCKEVALLLDMSVYQLLYMDKMPAYAVIDEAVRITKK 102
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+ +NAVL +V R + + G
Sbjct: 103 NIHPRFSALVNAVLRQVERNGKRELEGNAIEQ 134
>gi|325479479|gb|EGC82575.1| transcription antitermination factor NusB [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 127
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 19/143 (13%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R + +YQ I + I D E+ + I+
Sbjct: 2 NRAEQREWVFKLIYQDMISHTDDIDKI----------------IEENGLSDEEFVKESIN 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
I+ + L + RL +L +IL + E+ VPV V I+E V +A
Sbjct: 46 SYFSNISSIEEKLKENLDSRS--KRLAKVLRAILYLSLNEIYYL-GVPVSVSINEAVNLA 102
Query: 135 HDFFYGDEPKFINAVLDKVSRKE 157
+ D+ K IN++L + RK+
Sbjct: 103 KKYSDKDDYKLINSILGSIVRKD 125
>gi|255531305|ref|YP_003091677.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
gi|255344289|gb|ACU03615.1| NusB/RsmB/TIM44 [Pedobacter heparinus DSM 2366]
Length = 316
Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+L S D ++ + + + LI+ T+ W R+ ++ +++ +
Sbjct: 197 NKLTPISQDWAEDSKFVEDLFVHTLKSDKEYQGLIAER-TKNWESERIALMDTILMKMAI 255
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
EL+ S+PV+V I+EY+ ++ D+ FIN +LDK+ + S
Sbjct: 256 CELMNFPSIPVKVTINEYLDLSKDYSTPKSNSFINGILDKILGDLKRTNS 305
>gi|78355064|ref|YP_386513.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78217469|gb|ABB36818.1| sun protein [Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 444
Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 21/157 (13%)
Query: 10 LKLSHRRG-------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+K R AR AA++ L + ++ Y ++
Sbjct: 1 MKKQSPRRGGVATLPPARGAALEILRDVLDKKREAQSVLDSYL-----------KDNRLS 49
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D +++G + + I LI L L + V E++ VP
Sbjct: 50 PQDAALCTELVYGYLRSEIRISWLIRRFLKPDSRL---PAELLLTMGISVYEILYLQRVP 106
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V + V F + NAVL + R +
Sbjct: 107 VYASVDWAVSYVRSRFGTGLSRLANAVLRSIDRLGDA 143
>gi|218887132|ref|YP_002436453.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758086|gb|ACL08985.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 530
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 3/114 (2%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + D +++G + + I L+ LT L
Sbjct: 80 DGSALRHAGISRQDAALATELVYGYLRSEIRISWLLRRFLTAPEKL---PQEALLTLGVA 136
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
E++ +P + V F K NAVL V+R + R+ +
Sbjct: 137 AHEIVHLDRIPDYAAVDWAVTHIRQRFGPGLGKLANAVLRNVARLGDDARNAEM 190
>gi|124025193|ref|YP_001014309.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
gi|123960261|gb|ABM75044.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. NATL1A]
Length = 448
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 18/158 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + +N +K R A +QA + G S ++ A +
Sbjct: 1 MLLSENLSSIKGLDARKAAWE-VIQA-----VGGGSFADV----------ALERIFNLYS 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ +D + +G + ++ ++D I + +L +L G+ ++++
Sbjct: 45 FKSIDKALITELSYGAIRQRYYLDCWIDHLGKV--PAKKQPPLLRWLLHLGLYQVLKMKR 102
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P I+ V +A +N +L R +E
Sbjct: 103 IPPAAAINTTVELAKTHHLRKLAPVVNGILRSALRSKE 140
>gi|24371630|ref|NP_715672.1| sun protein [Shewanella oneidensis MR-1]
gi|46396921|sp|Q8EKR0|RSMB_SHEON RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|24345386|gb|AAN53117.1|AE015454_11 sun protein [Shewanella oneidensis MR-1]
Length = 428
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++ + G S + + E + + D + +GVM
Sbjct: 4 RALAAKAIFDVLEKGVSLSVALPEQQKHLA------------SGKDKALLAELCYGVMRT 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
I+ + CL + I+ +L G +L +P ISE +
Sbjct: 52 LPQIEKRTAECLAK--PLKGKQRIIHQLLIVGCYQLYFTR-IPSHAAISETAEACRQLKF 108
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL + R+
Sbjct: 109 EGMVKVVNGVLRNIQRQL 126
>gi|312129526|ref|YP_003996866.1| nusb antitermination factor [Leadbetterella byssophila DSM 17132]
gi|311906072|gb|ADQ16513.1| NusB antitermination factor [Leadbetterella byssophila DSM 17132]
Length = 371
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 44 YETYRFCADTELDVESVYL---HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ ++ + E+ V ++ R + + + + I L W R+
Sbjct: 239 FHSFANFVEDEVVVIEKLDDQWEDTKDFLRTLFKETAVKDEELLEHILPHLKN-WDLERI 297
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+L+ V EL S+PV+V I+E + IA ++ FIN +LD + + + K
Sbjct: 298 IGTDLILLKMAVAELTTFPSIPVKVTINEIIEIAKNYSSEKSKVFINGLLDSICKDLQQK 357
>gi|57239039|ref|YP_180175.1| putative N utilization substance protein B-like protein [Ehrlichia
ruminantium str. Welgevonden]
gi|58578981|ref|YP_197193.1| putative N utilization substance protein B-like protein [Ehrlichia
ruminantium str. Welgevonden]
gi|58617039|ref|YP_196238.1| putative N utilization substance protein B-like protein [Ehrlichia
ruminantium str. Gardel]
gi|57161118|emb|CAH58029.1| hypothetical protein Erum3120 [Ehrlichia ruminantium str.
Welgevonden]
gi|58416651|emb|CAI27764.1| Putative N utilization substance protein B homolog [Ehrlichia
ruminantium str. Gardel]
gi|58417607|emb|CAI26811.1| Putative N utilization substance protein B homolog [Ehrlichia
ruminantium str. Welgevonden]
Length = 174
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AVQ Y + + + E+ +++D +
Sbjct: 11 WQSKKTTTRFLAVQGTYAMTFNNYTIND-----LDNLIDYLYEMKEVLNLMYIDDQLLLK 65
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
II ++ +I+ I+ L EKWS R+++I SI++ + EL C +II+EYV
Sbjct: 66 IISTMLIAFNNINSNIAGFLNEKWSIDRINLISLSIIKTAICEL-MCSKTDKIIIINEYV 124
Query: 132 CIAHDFFYGDEPKFINAVLDK 152
IA E FINA+L++
Sbjct: 125 NIASQILERTEVNFINAILNQ 145
>gi|116670233|ref|YP_831166.1| Fmu (Sun) domain-containing protein [Arthrobacter sp. FB24]
gi|116610342|gb|ABK03066.1| Fmu (Sun) domain protein [Arthrobacter sp. FB24]
Length = 539
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L + ++ + D +
Sbjct: 62 RTRRADPARLVAFEVLRAVASEDAYANLVLPARIRH-----------HGLDKRDAGFATE 110
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ +G + + D +++ C+ +LD + LR G +L+ VP + + V
Sbjct: 111 LSYGALRGQGTYDAVLARCVDR--PLDQLDPAILDALRIGAHQLLAMR-VPAHAALDQTV 167
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A INAVL KVS
Sbjct: 168 GLARAVIGAGPSALINAVLRKVS 190
>gi|319948960|ref|ZP_08023065.1| RNA binding Sun protein [Dietzia cinnamea P4]
gi|319437398|gb|EFV92413.1| RNA binding Sun protein [Dietzia cinnamea P4]
Length = 446
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 4/135 (2%)
Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
+ + E Y + D + +G + + +D +I+ L
Sbjct: 4 TVMAAVRERAAYANLTLPAELRRAKLDTRDAALATELTYGTLRAQGLLDRIIT--LASSR 61
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV-S 154
+D + ++R G +L+ + V A G F+NAVL K+ +
Sbjct: 62 PVEEIDPPVLDLIRLGAYQLLFTRIG-AHAAVDTSVEAARTAGLGRAGAFVNAVLRKISA 120
Query: 155 RKEEIKRSGCVSAIT 169
R + +T
Sbjct: 121 RDADAWVEALRDGVT 135
>gi|206891137|ref|YP_002248173.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206743075|gb|ACI22132.1| Sun protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 441
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D + +I+GV+ +ID L+ + S + LR + +L+ H
Sbjct: 36 FDKADRAFLLEVIYGVLRNLYYIDWLLEDFYKSREKLSMYTINN---LRCAIYQLVFMHI 92
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V +E V + F P +NA+L RK + ++ Q
Sbjct: 93 PAYAVA-NETVNVEKSFNGK--PNVVNAILRNFLRKYQADEIFRITEQMQ 139
>gi|326522879|dbj|BAJ88485.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 275
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 36/96 (37%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y + L R ++ V +I+ + + W + IL + + +
Sbjct: 166 YNNFVLRLARDMLVAVASGWDQHVEVINKIIPQHWKDEPVARILELCILHIAMAEMTSKG 225
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P +V I+E V +A F G P+ IN L +
Sbjct: 226 TPHKVAINEAVDLAKRFCDGGAPRVINGCLRTYVKD 261
>gi|290477163|ref|YP_003470078.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
gi|289176511|emb|CBJ83320.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus bovienii
SS-2004]
Length = 428
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++Q+ G S + +I E + D + + GV+
Sbjct: 8 RNIAAKAIHQVLEQGQSLSTVIPELQQ-------------RVSDKDKALLQELCFGVIRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + I ++ G+ +L +P ++E V A
Sbjct: 55 LPQLEWFIGQLMAK--PLKGKQRIFHYLIMVGIYQLTYTR-IPAHAALAETVNGAISLKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R+++
Sbjct: 112 PQLKGLINGVLRQFQRQQQT 131
>gi|159030883|emb|CAO88564.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L ID + + + S +D I++G++
Sbjct: 3 NARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDKALTTEIVYGIV 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R++ +D L+ + ++ L IL G+ +L +P ++ V +
Sbjct: 52 RRQRTLDALLDRLGKKTA--AQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKIS 109
Query: 138 FYGDEPKFINAVLDKVSR 155
G +N +L + R
Sbjct: 110 HLGKLAAVVNGMLRQYLR 127
>gi|319744301|gb|EFV96665.1| RNA methyltransferase Sun [Streptococcus agalactiae ATCC 13813]
Length = 440
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ G Y A + +S D I++G
Sbjct: 6 KKSARGLALMTLEEVFDKG-----------AYSNIALNKSLKKSRLSDKDRALVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +S + ++ L + +L+ ++P I+++ V IA
Sbjct: 55 TVARKITLEWYLSHFIVDRDKLELWVYHLLL---LSLYQLLYLDNIPDHAIVNDAVTIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRK 156
+ K INAVL +VS +
Sbjct: 112 NRGNKKGAEKLINAVLRRVSSE 133
>gi|77410664|ref|ZP_00787024.1| sun protein [Streptococcus agalactiae CJB111]
gi|77163379|gb|EAO74330.1| sun protein [Streptococcus agalactiae CJB111]
Length = 440
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ G Y A + +S D I++G
Sbjct: 6 KKSARGLALMTLEEVFDKG-----------AYSNIALNKSLKKSRLSDKDRALVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +S + ++ L + +L+ ++P I+++ V IA
Sbjct: 55 TVARKITLEWYLSHFIVDRDKLELWVYHLLL---LSLYQLLYLDNIPDHAIVNDAVTIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRK 156
+ K INAVL +VS +
Sbjct: 112 NRGNKKGAEKLINAVLRRVSSE 133
>gi|226953279|ref|ZP_03823743.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
ATCC 27244]
gi|226835967|gb|EEH68350.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
ATCC 27244]
Length = 435
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 23/158 (14%)
Query: 10 LKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+ S++ R ++ L + G S + +++++ D
Sbjct: 1 MNPSNQSSAKNLNLRAQVIKTLLAVQ-NGQSLSSVLNQHINM-------------VSERD 46
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ + G + + + + LT+ + L S L G+ +++ C +PV
Sbjct: 47 RGLYHELTLGCLRQWYSLKAITLPLLTKPLD----NEALESCLYLGLYQIL-CTRIPVHA 101
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
ISE V A + +NA+L +VSR+ + +
Sbjct: 102 AISETVNAAKQLGFEPMSGLVNAILRRVSRETDEFETA 139
>gi|46581764|ref|YP_012572.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
gi|46451187|gb|AAS97832.1| sun protein [Desulfovibrio vulgaris str. Hildenborough]
gi|311232323|gb|ADP85177.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1]
Length = 507
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 14/146 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ AL + G + + ++ D +++G +
Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSHA-----------SLSRQDAALCTELVYGYLR 84
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ + L+ L + ++L EL +C VP + V +
Sbjct: 85 SEIRLSWLVRRFLKAPSKL---PPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164
+ NAVL V R + R
Sbjct: 142 GTGVSRLANAVLRNVDRLGDAWRVAD 167
>gi|149190437|ref|ZP_01868708.1| Sun protein [Vibrio shilonii AK1]
gi|148835691|gb|EDL52657.1| Sun protein [Vibrio shilonii AK1]
Length = 425
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I G +
Sbjct: 4 RAAAANILFQVVDKGQSLSSALP-------------LGQQQVKPRDQALLQEICFGALRI 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S + + + ++ G+ ++ +P + E V
Sbjct: 51 LPRLESVASELMDK--PLKGKQRVFHHLILVGIYQIGHMR-IPAHAAVGETVEATKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEE 158
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQE 126
>gi|22536500|ref|NP_687351.1| sun protein [Streptococcus agalactiae 2603V/R]
gi|25010379|ref|NP_734774.1| sun protein [Streptococcus agalactiae NEM316]
gi|76787603|ref|YP_329039.1| sun protein [Streptococcus agalactiae A909]
gi|77404948|ref|ZP_00782049.1| sun protein [Streptococcus agalactiae H36B]
gi|22533332|gb|AAM99223.1|AE014206_3 sun protein [Streptococcus agalactiae 2603V/R]
gi|23094731|emb|CAD45950.1| unknown [Streptococcus agalactiae NEM316]
gi|76562660|gb|ABA45244.1| sun protein [Streptococcus agalactiae A909]
gi|77176387|gb|EAO79155.1| sun protein [Streptococcus agalactiae H36B]
Length = 440
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 15/142 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ G Y A + +S D I++G
Sbjct: 6 KKSARGLALMTLEEVFDKG-----------AYSNIALNKSLKKSRLSDKDRALVTEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ +S + ++ L + +L+ ++P I+++ V IA
Sbjct: 55 TVARKITLEWYLSHFIVDRDKLELWVYHLLL---LSLYQLLYLDNIPDHAIVNDAVTIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRK 156
+ K INAVL +VS +
Sbjct: 112 NRGNKKGAEKLINAVLRRVSSE 133
>gi|256820792|ref|YP_003142071.1| N utilization substance protein B [Capnocytophaga ochracea DSM
7271]
gi|256582375|gb|ACU93510.1| N utilization substance protein B [Capnocytophaga ochracea DSM
7271]
Length = 302
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + ++ ++ + + I + +T W R+ +I +L+
Sbjct: 184 DKYFVPSLYKDEEEKDFLTGLLKKAVLNDSKWEDEIITRMTG-WEKDRVAVIDSILLKMA 242
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V E++ S+PV+V ++EY+ +A ++ FIN V+ V ++ E K
Sbjct: 243 VCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEK 291
>gi|313898375|ref|ZP_07831912.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
HGF2]
gi|312956757|gb|EFR38388.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
HGF2]
Length = 415
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D I++G + + C+ + S +C +L V +L
Sbjct: 30 NQAKPQDKGLITQIVYGTLQNYRLCRYQWEDCVKKLPSDE-----VCVLLDMSVYQLFYM 84
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+P II++ V I +G+ K +NAVL V R+ + + +G
Sbjct: 85 DKLPAYAIINDAVEITKKQIHGNMAKLVNAVLHAVQRRGKREITGKEEE 133
>gi|218246294|ref|YP_002371665.1| transcription antitermination protein NusB [Cyanothece sp. PCC
8801]
gi|254772631|sp|B7K4P4|NUSB_CYAP8 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|218166772|gb|ACK65509.1| NusB antitermination factor [Cyanothece sp. PCC 8801]
Length = 211
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E+ +I V R+ ID + + L + W +RL I ILR V E++ +P +V
Sbjct: 117 REYALELIGAVNRRRTEIDQQLEAVLVD-WQLNRLPKIDRDILRIAVAEILFLE-IPNKV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I+E + +A + + +FIN VL + + + I +
Sbjct: 175 AINEAIEMAKRYSDDEGYRFINGVLRRFTERLRITNN 211
>gi|297799366|ref|XP_002867567.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313403|gb|EFH43826.1| antitermination NusB domain-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 300
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 63/209 (30%), Gaps = 53/209 (25%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC----------------- 50
K +LS R AR A+ LY + G + + R
Sbjct: 89 KSGRLSSPR-AARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEYNHMS 147
Query: 51 --------------------ADTELDVESV---------YLHVDLEWFRVIIHGVMDRKQ 81
+ E +E+ Y + L + + ++ V+D+
Sbjct: 148 FGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWD 207
Query: 82 HIDLLISSCLTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++I W + I SIL + E+ + V I+E V +A F G
Sbjct: 208 SHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIV-INEAVDLAKRFCDG 266
Query: 141 DEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
P+ IN L + R+ +
Sbjct: 267 SAPRIINGCLRTFVKD----RAATSTPQA 291
>gi|326487822|dbj|BAK05583.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ VI+ G + K++ID LI S +E+ FS ++ +L ILR G E+++ +
Sbjct: 127 LDDRDIRLVTVIVAGTVRWKRYIDYLIMSLCSEEKVFSNMEPLLLQILRIGFYEILKL-N 185
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP ++ E V +A +NA+L K+
Sbjct: 186 VPAYAVVDENVRLAKVALRPGAGNMVNAILRKLL 219
>gi|315125135|ref|YP_004067138.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315013648|gb|ADT66986.1| 16S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
Length = 431
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 17/157 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R A + LY + G S + + D + I
Sbjct: 1 MSNVSNVRALAAETLYNVVDKGASLNQELPF-------------ASQGLSPKDKALLQQI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+ ++ + I +L G+ +L VP ISE V
Sbjct: 48 CYGVLRYLPSLENYCQ--HLVEQPLKGKRRIFQFLLYVGIYQLQHMR-VPPHAAISETVN 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSAI 168
INA+L R++ E++ +
Sbjct: 105 ALQQLRALGLKGLINAILRSFQRQQAELEEKAKQIPV 141
>gi|85711007|ref|ZP_01042068.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
gi|85695411|gb|EAQ33348.1| tRNA and rRNA methylase [Idiomarina baltica OS145]
Length = 437
Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R A QA++ + G S T+ ++ Y D + I +GVM
Sbjct: 11 SRAVAAQAIHAVLEQGQSLTQALTTYSE-------------QLSAEDKRLAQAISYGVMR 57
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +S + I+ S+L G +L +S V +
Sbjct: 58 YLPVLTEKVS--GKLDKPLKGKNQIIQSLLLVGTYQL-FKLRTKDHAAVSATVEASKLLK 114
Query: 139 YGDEPKFINAVLDKVSRK 156
+N VL +V R+
Sbjct: 115 RKALSGLVNGVLRQVLRE 132
>gi|260774556|ref|ZP_05883469.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
gi|260610462|gb|EEX35668.1| ribosomal RNA small subunit methyltransferase B [Vibrio
metschnikovii CIP 69.14]
Length = 426
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIAGQLMDN--PLKGKKRVFHHLILVGLYQLSYMR-IPSHAAVAETVEATKTLRG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E + VS
Sbjct: 108 PSLSGLINAVLRSYLRDQEALDAFAVS 134
>gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
gi|225208014|gb|EEG90368.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
Length = 357
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ ++ +ILR V ++ VP +E V +A + + F+N VL ++R +
Sbjct: 1 MKPVIRNILRCAVYQIKYMDQVPDSAACNEAVNLAIRKGFKNLRGFVNGVLRNIARNID 59
>gi|297626327|ref|YP_003688090.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922092|emb|CBL56660.1| Sun, tRNA and rRNA cytosine-C5-methylases [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 439
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 14/135 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L ++D G Y A + + D + + +G
Sbjct: 5 RRTAFEILREVDRRG-----------AYANLATRQAINDQELTGRDAAFVTELAYGTCRM 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
D +++ + L + LR G +L+ +P + V +A
Sbjct: 54 LGTYDAILAQ--ASGRDLNDLQPDIVDALRLGAHQLLGMR-IPDRAAVDTTVDLAAIVVG 110
Query: 140 GDEPKFINAVLDKVS 154
NA++ KV+
Sbjct: 111 ERVAGLANAIMRKVA 125
>gi|262182499|ref|ZP_06041920.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
aurimucosum ATCC 700975]
Length = 468
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 12 LSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+S R + R A + L +++ + + + D
Sbjct: 1 MSAARRCGVDVPRAVAFEVLQRVEADD-----------AFANLTLPKAVSANNLSGRDAA 49
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + +G + + +D +I++C + + + + LR G +++ +
Sbjct: 50 FSTELTYGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTRVE-AHAAV 106
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V + + F N ++ ++R + ++ +
Sbjct: 107 DTTVRLVEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEE 149
>gi|108760453|ref|YP_629658.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
gi|108464333|gb|ABF89518.1| ribosomal RNA small subunit methyltransferase B [Myxococcus xanthus
DK 1622]
Length = 438
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 13/135 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+Q L ++ ++ DT+L D + +G
Sbjct: 2 NARALAIQVLARVRATDAYLNVVL----------DTQLSESPPKDPRDAALVTELTYGAT 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ +D I+ L+ + + LR G ++ VP ++E V +
Sbjct: 52 RRQLALDYAITRFADR--KLDALEDKVLAALRIGAYQI-FHTRVPARAAVAETVQALKEV 108
Query: 138 FYGDEPKFINAVLDK 152
F NA+L K
Sbjct: 109 GLTRAAGFTNAILRK 123
>gi|260903811|ref|ZP_05912133.1| Fmu (Sun) domain protein [Brevibacterium linens BL2]
Length = 492
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 20/160 (12%)
Query: 3 IQDNKKDLKLSH-RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
Q ++ + + R IA V ++Y +
Sbjct: 36 QQTEREPRQAKNLPRRIAWEVLVDV---------------ETKDSYANLLLPAKLARTHM 80
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + +G + +++ D +I+ +D + +R G +++ V
Sbjct: 81 EPQDAAFTTELTYGALRQQEFYDAIIAR--AANRPIDSIDAEPLAGMRLGAHQILSMR-V 137
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P +SE V + F+NAVL ++S + +
Sbjct: 138 PDHAALSETVAVIKT-NAPKTAGFVNAVLRRISEVDRAEW 176
>gi|254507306|ref|ZP_05119442.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
gi|219549766|gb|EED26755.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus 16]
Length = 426
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGQSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELMDN--PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLRGLINAVLRSYLRDQEALDEKAVS 134
>gi|120601083|ref|YP_965483.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
gi|120561312|gb|ABM27056.1| NusB/RsmB/TIM44 [Desulfovibrio vulgaris DP4]
Length = 507
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ AL + G + + ++ D +++G +
Sbjct: 36 ARAGALVALDAVVRAGVDVQAALDDSLSHA-----------SLSRQDAALCTELVYGYLR 84
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ + L+ L + ++L EL +C VP + V +
Sbjct: 85 SEIRLSWLVRRFLKAPSKL---PPGVLALLCLAAYELTQCDRVPAYATLDWAVSAVRALY 141
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGC 164
+ NAVL V R ++ R
Sbjct: 142 GTGVSRLANAVLRNVDRLGDVWRVAD 167
>gi|323496958|ref|ZP_08101986.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
gi|323318032|gb|EGA71015.1| 16S rRNA methyltransferase B [Vibrio sinaloensis DSM 21326]
Length = 426
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGQSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELMDN--PLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLRG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLRGLINAVLRSYLRDQEALDEKAVS 134
>gi|315223935|ref|ZP_07865780.1| antitermination factor [Capnocytophaga ochracea F0287]
gi|314946107|gb|EFS98111.1| antitermination factor [Capnocytophaga ochracea F0287]
Length = 313
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D + ++ ++ + + I S +T W R+ +I +L+
Sbjct: 195 DKYFVPSLYKDEEEKDFLTGLLKKAVLNDSKWENEIISRMTG-WEKDRVAVIDSILLKMA 253
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V E++ S+PV+V ++EY+ +A ++ FIN V+ V ++ E K
Sbjct: 254 VCEMLSFPSIPVKVTLNEYLELAKEYSTTKSSAFINGVMKNVHKELEEK 302
>gi|313886911|ref|ZP_07820614.1| transcription antitermination factor NusB [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923608|gb|EFR34414.1| transcription antitermination factor NusB [Porphyromonas
asaccharolytica PR426713P-I]
Length = 347
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++ + ++ D +++ L W R+ ++ ++ V E + C +
Sbjct: 245 SDRDRLYAHQLLSETLLHREEYDAMLTPRLDN-WEQDRVALVDMILMEMAVAEALNCPDI 303
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ V I+EY+ +A + FINAVLD++ + +
Sbjct: 304 ALVVTINEYIELAKVYDNSKSASFINAVLDRLFTDLKSE 342
>gi|123965723|ref|YP_001010804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
gi|123200089|gb|ABM71697.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9515]
Length = 437
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y A ++ + +D+ + + G + ++ +D I + L
Sbjct: 23 YSDHALEKVLKNYEFNSLDIAFITELSFGCIRYRKFLDTWIDHISKLSH--QKQPPKLRW 80
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L G+ +L++ +P IS V +A +NA+L R E
Sbjct: 81 LLHIGLYQLLKMDKIPFPAAISSTVEVAKRTDLKGLAGTVNAILRNTVRNIE 132
>gi|332300781|ref|YP_004442702.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
20707]
gi|332177844|gb|AEE13534.1| NusB antitermination factor [Porphyromonas asaccharolytica DSM
20707]
Length = 347
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++ + ++ D +++ L W R+ ++ ++ V E + C +
Sbjct: 245 SDRDRLYAHQLLSETLLHREDYDAMLTPRLDN-WEQDRVALVDMILMEMAVAEALNCPDI 303
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ V I+EY+ +A + FINAVLD++ + +
Sbjct: 304 ALVVTINEYIELAKVYDNSKSASFINAVLDRLFTDLKSE 342
>gi|260599608|ref|YP_003212179.1| 16S rRNA methyltransferase B [Cronobacter turicensis z3032]
gi|260218785|emb|CBA34133.1| Ribosomal RNA small subunit methyltransferase B [Cronobacter
turicensis z3032]
Length = 425
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 4 RSLAAQAIEQVVEKGQSLSTVLPPLQ-------------HKVSDKDKALLQELCFGVLRT 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ LI+ ++ + + + ++ G+ +L+ +P ++E V A
Sbjct: 51 LSQQEWLINKLMSRPMTGKQ--RTIHYLIMVGLYQLLYTR-IPPHAALAETVEGAVAIKR 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R+++
Sbjct: 108 MQFKGLINGVLRQFQRQQDE 127
>gi|325577101|ref|ZP_08147585.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
gi|325160683|gb|EGC72804.1| RNA methyltransferase Sun [Haemophilus parainfluenzae ATCC 33392]
Length = 445
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 19/158 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q K + + R A Q + Q+ G S + ++ +V+
Sbjct: 1 MVSQRKKTEKSTALS---VRAIAAQVILQVLDQGKSLSTLLP-------------EVQLQ 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + I G+ ++ +I L + I+ +L G+ +L+
Sbjct: 45 VKPQDLPLLQEITFGICRVLPCLENIIKKLLDK--PLKGKTRIVHCLLLVGLYQLLYMR- 101
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VP + E V +N VL + R++E
Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREKE 139
>gi|313665137|ref|YP_004047008.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
gi|312949207|gb|ADR23803.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma leachii
PG50]
Length = 423
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R A L ++ I + +++ + D ++ ++HGV+
Sbjct: 3 SRSIAFDILKKVFINKAYSNVLLN------------KISKKNLNQQDKDFVFNLVHGVIS 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K H+D L++ + + + L IL + ++I +S+P I++E V +
Sbjct: 51 NKIHLDYLLAKLI----DVKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTTS 106
Query: 139 YGDEPKFINAVLDKVSRKEE 158
+ FINA+L+K R ++
Sbjct: 107 -QKQANFINAILNKFLRFKD 125
>gi|33866211|ref|NP_897770.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
gi|33639186|emb|CAE08194.1| Sun protein (Fmu protein) [Synechococcus sp. WH 8102]
Length = 441
Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 22/158 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT K R +A +QA+ Y A E
Sbjct: 1 MTQPQT----KGLAPRRLAWE-VLQAV---------------AAGAYADVALERALREHP 40
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + +G + R++ +D + + S+ L +L G+ +L+
Sbjct: 41 LAGADRGLATELAYGAIRRRRPLDAWLDRL--GRIPASKQPPKLRWLLHVGLYQLLWMER 98
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P ++ V +A +N +L R E
Sbjct: 99 IPASAAVNTTVDLAKAVGLARLAPVVNGMLRSALRARE 136
>gi|320528399|ref|ZP_08029561.1| putative transcription antitermination factor NusB [Solobacterium
moorei F0204]
gi|320131313|gb|EFW23881.1| putative transcription antitermination factor NusB [Solobacterium
moorei F0204]
Length = 150
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 25/164 (15%)
Query: 1 MTIQDNKKDLKLSH-----------RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRF 49
M N +++ R R A+ +YQ I+ +
Sbjct: 1 MKTGKNMPKTRMNMVKYMLGDYREMNRHDQRENAMITVYQYLIVQRDI---------HAL 51
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
D ES +F +I + + I S L + WS+ RL +I +IL
Sbjct: 52 INDVFKVDESEIDP----YFIDVIKTSIANEDRYREYIDSVLKKGWSYERLGLIEKAILL 107
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
G E VII + V +A + D K +N+VLD +
Sbjct: 108 NGCAEFD-LKKTESAVIIDQSVQLAKRYCDSDTYKLVNSVLDVI 150
>gi|312195556|ref|YP_004015617.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
gi|311226892|gb|ADP79747.1| Fmu (Sun) domain protein [Frankia sp. EuI1c]
Length = 486
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 21/168 (12%)
Query: 1 MTIQDNKKDLK-----LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + + R AR+ A + L +D G ++ R
Sbjct: 1 MTSPTGRPRPSAGGGSPAARVDDARMLAWEVLRAVDERGAYANLLLPSLLAQR------- 53
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
D + + +G + + +D L+ + + + +D L LR G +L
Sbjct: 54 ----RLTGRDRGFATELTYGALRAQGLLDGLLDTVTSR--PVATVDPGLRDALRLGTYQL 107
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ VP + V + +F NAVL +V+ + + +G
Sbjct: 108 L-RTRVPARAAVGTTVDLVRATAGERPVRFANAVLRRVA--DRVAETG 152
>gi|254414272|ref|ZP_05028039.1| transcription antitermination factor NusB, putative [Microcoleus
chthonoplastes PCC 7420]
gi|196178947|gb|EDX73944.1| transcription antitermination factor NusB, putative [Microcoleus
chthonoplastes PCC 7420]
Length = 213
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ I+ + R+ ID ++ L + W +RL I ILR V E+ +P V
Sbjct: 113 RAYAIEILQAIRRRQVEIDEILVKSLKD-WQINRLPRIDRDILRIAVAEMAFL-GIPDRV 170
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
I+E + +A + + +F+N VL +V
Sbjct: 171 AINEAIELAKRYSDQEGHRFVNGVLRRV 198
>gi|220912433|ref|YP_002487742.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
gi|219859311|gb|ACL39653.1| Fmu (Sun) domain protein [Arthrobacter chlorophenolicus A6]
Length = 527
Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 16/143 (11%)
Query: 14 HRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R ARL A + L +++ + Y + D +
Sbjct: 62 RTRRADPARLVAFEVL-----------RAVAQEDAYANLVLPARIRQHRLDKRDAGFATE 110
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G + + D +++ C+ +LD + LR GV +L+ VP + + V
Sbjct: 111 LSCGALRGQGTYDAVLARCVDR--PLDQLDPAVLDALRIGVHQLLAMR-VPAHAALDQTV 167
Query: 132 CIAHDFFYGDEPKFINAVLDKVS 154
+A INAVL KVS
Sbjct: 168 GLARAVIGAGPSALINAVLRKVS 190
>gi|326803320|ref|YP_004321138.1| transcription antitermination factor NusB [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650660|gb|AEA00843.1| transcription antitermination factor NusB [Aerococcus urinae
ACS-120-V-Col10a]
Length = 194
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 39/187 (20%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE--------- 67
R AV LYQ ++ ST E Y + L+
Sbjct: 6 SQIRELAVLTLYQEAMVPESTKEESFAYLLANLDDLEDQLSYEEIDQEQLDQLKSQGLPL 65
Query: 68 ----------------------------WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+++ ++ + ++ +D I + KWS +R
Sbjct: 66 EKSQGQMKSNKRFNQAPVSEDEELSLPPYYQELLDRIASHQESVDQAIEDHIQGKWSLNR 125
Query: 100 LDMILCSILRAGVLELIE--CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
L+ + +ILR G E++ VP V + E + +A + +FIN VL +
Sbjct: 126 LEAMNLAILRVGAYEILYGDHDRVPGVVAVDEAIHLARRYSDEASRRFINGVLSSILATV 185
Query: 158 EIKRSGC 164
E K+
Sbjct: 186 EDKQPEE 192
>gi|306836175|ref|ZP_07469159.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
gi|304567896|gb|EFM43477.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726]
Length = 484
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + S + + + + D + I +G +
Sbjct: 44 ARAVAFDV-----VRRVSEEDA------FANLVLPKALRKQKLSGRDAAFATEITYGTLR 92
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +I+ C + + + ++ LR G +++ P + V +
Sbjct: 93 TLGVLDAVIAQCSSRE--LEAISPVVIDALRLGTYQVLYTRVEP-HAAVDTSVRLVVAGG 149
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F N +L ++R + ++ +
Sbjct: 150 EEKAKGFANGILRTITRTPPNEWLKRLAPEGE 181
>gi|125587334|gb|EAZ27998.1| hypothetical protein OsJ_11964 [Oryza sativa Japonica Group]
Length = 287
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 2/137 (1%)
Query: 33 IGCSTTEIISEYETYRFCADTELDVESV--YLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
G +++S+ E L Y + L R I+ V +I+
Sbjct: 146 TGEEAEKLMSQNEKDSANEAEVLSAPPKLVYNNFVLRLAREILVAVASGWDKHVDIINKI 205
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ W + IL + + + P +++I+E V +A F G P+ IN L
Sbjct: 206 TPQNWKDEPVARILELCILHIAMAEMTSKGTPHKIVINEAVDLAKRFCDGGAPRVINGCL 265
Query: 151 DKVSRKEEIKRSGCVSA 167
+ + +
Sbjct: 266 RTFVKDHMNIDTSQPAP 282
>gi|311277757|ref|YP_003939988.1| sun protein [Enterobacter cloacae SCF1]
gi|308746952|gb|ADO46704.1| sun protein [Enterobacter cloacae SCF1]
Length = 429
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A QA+ Q+ G S + ++ + D + +
Sbjct: 1 MKKHQNLRSLAAQAVEQVVEQGQSLSNVLPPLQQ-------------KVADKDRALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ +D LI+ ++ + + + ++ G+ +L+ +P ++E V
Sbjct: 48 SFGVLRTLPQLDWLITQLMSRPMTGKQ--RTVHYLIMVGLYQLLHTR-IPAHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQEA 131
>gi|119773183|ref|YP_925923.1| sun protein [Shewanella amazonensis SB2B]
gi|119765683|gb|ABL98253.1| sun protein [Shewanella amazonensis SB2B]
Length = 427
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 15/137 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A++ + G S + + + + D I +GVM
Sbjct: 4 RALAAKAIFDVLERGVSLSVALPTQQLWLRD------------GKDKALLAEICYGVMRS 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+S + + ++ +L G +L VP ISE +
Sbjct: 52 LPQLDKLVSGYM--QKPLKGKQRVVHQLLLVGAYQLYFTR-VPAHAAISETAEGCRALGF 108
Query: 140 GDEPKFINAVLDKVSRK 156
K +N VL + R+
Sbjct: 109 ESLVKVVNGVLRNIQRQ 125
>gi|18416739|ref|NP_567745.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
gi|15450968|gb|AAK96755.1| putative protein [Arabidopsis thaliana]
gi|30984514|gb|AAP42720.1| At4g26370 [Arabidopsis thaliana]
gi|332659789|gb|AEE85189.1| antitermination NusB domain-containing protein [Arabidopsis
thaliana]
Length = 301
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 49/197 (24%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC----------------- 50
K +LS R AR A+ LY + G + + R
Sbjct: 90 KSGRLSSPR-AARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMS 148
Query: 51 --------------------ADTELDVESV---------YLHVDLEWFRVIIHGVMDRKQ 81
+ E +E+ Y + L + + ++ V+D+
Sbjct: 149 FGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWD 208
Query: 82 HIDLLISSCLTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++I W + I SIL + E+ + V I+E V +A F G
Sbjct: 209 SHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIV-INEAVDLAKRFCDG 267
Query: 141 DEPKFINAVLDKVSRKE 157
P+ IN L +
Sbjct: 268 SAPRIINGCLRTFVKDR 284
>gi|332996759|gb|EGK16384.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-272]
Length = 429
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 17/148 (11%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +R + R A A+ Q+ G S + I+ + D +
Sbjct: 1 MKKQRNL-RSMAAHAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQE 46
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 47 LCFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETV 103
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 104 EGAIAIKRPQLKGLINGVLRQFQRRQEE 131
>gi|227833013|ref|YP_002834720.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
aurimucosum ATCC 700975]
gi|227454029|gb|ACP32782.1| putative tRNA and rRNA cytosine-C5-methylase [Corynebacterium
aurimucosum ATCC 700975]
Length = 531
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 53/163 (32%), Gaps = 18/163 (11%)
Query: 12 LSHRRG----IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+S R + R A + L +++ + + + D
Sbjct: 64 MSAARRCGVDVPRAVAFEVLQRVEADD-----------AFANLTLPKAVSANNLSGRDAA 112
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + +G + + +D +I++C + + + + LR G +++ +
Sbjct: 113 FSTELTYGTLRSEGVLDAVIATCASRG--LEAIAPDVLTALRMGTYQVLYTRVE-AHAAV 169
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V + + F N ++ ++R + ++ +
Sbjct: 170 DTTVRLVEAAGHEKAKGFANGIMRTITRTPAHEWLDKLAPQEE 212
>gi|166367976|ref|YP_001660249.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
gi|166090349|dbj|BAG05057.1| rRNA SAM-dependent methyltransferase [Microcystis aeruginosa
NIES-843]
Length = 450
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 13/138 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L ID + + + S +D I++G++
Sbjct: 3 NARQLALLILRDIDRSSAYPDRALDRHLS-----------ASSLNCLDTALTTEIVYGII 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R++ +D L+ + ++ L IL G+ +L +P ++ V +
Sbjct: 52 RRQRTLDALLDRLGKKTA--AQQPPDLRRILHIGLYQLRYLSQIPPSAAVNTAVELTKIS 109
Query: 138 FYGDEPKFINAVLDKVSR 155
G +N +L + R
Sbjct: 110 HLGKLAAVVNGMLRQYLR 127
>gi|237740345|ref|ZP_04570826.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
gi|229422362|gb|EEO37409.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 2_1_31]
Length = 434
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + E + + I +GV+ K +D +I +
Sbjct: 18 SYSNIVLNDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + +L S V + E IA KFIN L R ++++
Sbjct: 73 NLLRISIYQLTFMSSDAKGV-VWEATEIAKKHGIA-ISKFINGTLRNYLRNKDLE 125
>gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
1_1_41FAA]
gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
1_1_41FAA]
Length = 434
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 7/115 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + E + + I +GV+ K +D +I +
Sbjct: 18 SYSNIVLNDAFKEFYLTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + +L S V + E IA KFIN L R ++++
Sbjct: 73 NLLRISIYQLTFMSSDAKGV-VWEATEIAKKHGIA-ISKFINGTLRNYLRNKDLE 125
>gi|325068809|ref|ZP_08127482.1| tRNA/rRNA cytosine-C5-methylase [Actinomyces oris K20]
Length = 253
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + EL + D + + +G + + D +I++C R+D +
Sbjct: 13 DAFANLLLPELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAV 70
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+LR G +L+ +S V +A F+NAVL ++S
Sbjct: 71 LDVLRLGAHQLMGMRVAQ-HAAVSTTVDLATTSCGRGAATFVNAVLRRLS 119
>gi|306821088|ref|ZP_07454704.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550781|gb|EFM38756.1| sun family protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 436
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 5/127 (3%)
Query: 30 IDIIGCSTTEI--ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
+++ + I + + Y E+ +S + + + +GV+ +D I
Sbjct: 1 MNLRNITYNIIFDVKHNKKYSNILINEVFTKSKLKDEEKNFITYLSYGVLGNIYFLDYFI 60
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
SFS++ IL + ELI +S ++E V + F+N
Sbjct: 61 RKYSDI--SFSKISNKAKVILEMALFELIFMNSSQNYATVNESVALCKK-VDFRAKNFVN 117
Query: 148 AVLDKVS 154
AVL K+S
Sbjct: 118 AVLRKIS 124
>gi|77359003|ref|YP_338578.1| 16S rRNA methyltransferase [Pseudoalteromonas haloplanktis TAC125]
gi|76873914|emb|CAI85135.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
haloplanktis TAC125]
Length = 431
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 17/150 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + LY + G S + + D + I +GV+
Sbjct: 8 RALAAETLYNVVDKGASLNQELPF-------------ASQGLPPKDKALLQQICYGVLRY 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + I +L G+ +L VP ISE V
Sbjct: 55 LPSLENYCQ--HLVEEPLKGKRRIFQFLLYVGIYQLQHMR-VPPHAAISETVNALQQLRA 111
Query: 140 GDEPKFINAVLDKVSR-KEEIKRSGCVSAI 168
INA+L R + E++ + +
Sbjct: 112 LGLKGLINAILRSFQRQQLELEEKAKLIPV 141
>gi|331703221|ref|YP_004399908.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328801776|emb|CBW53929.1| Sun family protein [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 423
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A L ++ + + +++ + D ++ ++HGV+
Sbjct: 2 NSRSIAFDILKKVFVNKAYSNVLLN------------KISKKNLNQQDKDFVFNLVHGVI 49
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K H+D L++ + + + L IL + ++I +S+P I++E V +
Sbjct: 50 SNKIHLDYLLAKLI----DVKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ FINA+L+K R ++
Sbjct: 106 S-QKQANFINAILNKFLRFKD 125
>gi|256851318|ref|ZP_05556707.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260660742|ref|ZP_05861657.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|282933237|ref|ZP_06338624.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 208-1]
gi|297206188|ref|ZP_06923583.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
gi|256616380|gb|EEU21568.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 27-2-CHN]
gi|260548464|gb|EEX24439.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 115-3-CHN]
gi|281302741|gb|EFA94956.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 208-1]
gi|297149314|gb|EFH29612.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii JV-V16]
Length = 437
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y + + E+ + D + +++G + + ++ + L K + L
Sbjct: 22 YSNLSLSHALNENNFSQKDQAFVTQLVYGTIQYQLFLEYQLKDLLRTKLK----EDYLKP 77
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRKEEIKRS 162
+L V +LI + VP ++ E +A F + + +N +L R+ ++ S
Sbjct: 78 LLLMSVYQLIFLNRVPNRAVLDEANKLAKSFGKKNSSGYRLVNGILRSFLRRGQVLPS 135
>gi|212709010|ref|ZP_03317138.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
gi|212688376|gb|EEB47904.1| hypothetical protein PROVALCAL_00042 [Providencia alcalifaciens DSM
30120]
Length = 428
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A A+ Q+ G S + ++ + + D + I
Sbjct: 1 MKNKYNLRSIAATAISQVLDNGQSLSTVLPDLQRNIN-------------DKDKALLQEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ IS + + + L ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRYLPKLEWFISQLM--EKPLTGKQRTLHYLIMVGIYQLLYTR-IPAHAALAETVD 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
A IN VL R++
Sbjct: 105 GAVALKRPQLKGLINGVLRSFLRQQ 129
>gi|90406716|ref|ZP_01214909.1| sun protein [Psychromonas sp. CNPT3]
gi|90312169|gb|EAS40261.1| sun protein [Psychromonas sp. CNPT3]
Length = 434
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q L + G S ++ + + D +V+ +GV+
Sbjct: 4 RALAAQVLNLVVEQGQSLSQALPVLQ-------------KDLTPKDKALLQVLCYGVLRT 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D S + + + ++ G+ +L+ +P + E V A
Sbjct: 51 LPRLDFFCRSLM--QKPLKGKQRVFHFLILVGIYQLLYTR-IPSHAAVGETVNGAKALNK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+N VL R++E
Sbjct: 108 QALKGMVNGVLRNFLREQEA 127
>gi|226329514|ref|ZP_03805032.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
gi|225202700|gb|EEG85054.1| hypothetical protein PROPEN_03423 [Proteus penneri ATCC 35198]
Length = 194
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + +I E + D + I GV+
Sbjct: 8 RSIAAKAINQVLDQGLSLSTVIPELQ-------------KNISDKDKALLQEICFGVLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + IL ++ G+ +L+ +P ++E V A
Sbjct: 55 LPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-IPAHAALAETVNGAVALKK 111
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
IN VL + R+++I
Sbjct: 112 PQLKGLINGVLRQFQRQQDILN 133
>gi|2982469|emb|CAA18233.1| putative protein [Arabidopsis thaliana]
gi|7269489|emb|CAB79492.1| putative protein [Arabidopsis thaliana]
Length = 286
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 49/197 (24%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFC----------------- 50
K +LS R AR A+ LY + G + + R
Sbjct: 75 KSGRLSSPR-AARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMS 133
Query: 51 --------------------ADTELDVESV---------YLHVDLEWFRVIIHGVMDRKQ 81
+ E +E+ Y + L + + ++ V+D+
Sbjct: 134 FGGPPVKTETKEEEDELVRHDEKESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWD 193
Query: 82 HIDLLISSCLTEKWSFSRLDMI-LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++I W + I SIL + E+ + V I+E V +A F G
Sbjct: 194 SHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIV-INEAVDLAKRFCDG 252
Query: 141 DEPKFINAVLDKVSRKE 157
P+ IN L +
Sbjct: 253 SAPRIINGCLRTFVKDR 269
>gi|327405408|ref|YP_004346246.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
gi|327320916|gb|AEA45408.1| NusB antitermination factor [Fluviicola taffensis DSM 16823]
Length = 315
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ E+ R ++ + +LL+ LT+ W R+ + +L+ + EL +
Sbjct: 204 KDKEDEQEFLRGLLRKTIS-MDSENLLLIDELTDNWELERIAKMDILLLKMAITELQVFN 262
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++P +V ++EY+ I+ + FIN +LDK + + + G +S + +
Sbjct: 263 NIPKKVTLNEYIEISKFYSTPKSHGFINGILDKAV--DRLVKDGKISKLGR 311
>gi|261250606|ref|ZP_05943181.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891]
gi|260939175|gb|EEX95162.1| ribosomal RNA small subunit methyltransferase B [Vibrio orientalis
CIP 102891]
Length = 426
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGQSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELM--ENPLKGKKRVFHHLILVGIYQLSFMR-IPAHAAVAETVEGTKTLKG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLRGLINAVLRSYLRDQEELDEKAVS 134
>gi|242045062|ref|XP_002460402.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
gi|241923779|gb|EER96923.1| hypothetical protein SORBIDRAFT_02g027560 [Sorghum bicolor]
Length = 574
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++
Sbjct: 155 LDDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLD- 213
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP + E V +A +NA+L K+
Sbjct: 214 VPAYAAVDENVKLAKVALRPGAGNMVNAILRKLV 247
>gi|227503566|ref|ZP_03933615.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
accolens ATCC 49725]
gi|227075602|gb|EEI13565.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
accolens ATCC 49725]
Length = 484
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + S + + + + D + I +G +
Sbjct: 44 ARAVAFDV-----VRRVSEEDA------FANLVLPKALRKQKLTGRDAAFATEITYGTLR 92
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +I+ C + + + ++ LR G +++ P + V +
Sbjct: 93 TLGVLDAVIAQCSSRE--LEAISPVVIDALRLGTYQVLYTRVEP-HAAVDTSVRLVVAGG 149
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F N +L ++R + ++ +
Sbjct: 150 EEKAKGFANGILRTITRTPPNEWLKRLAPEGE 181
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 2/117 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A S D + +G + +++ +D + ++ L
Sbjct: 46 AYADLALERELKRSKLSPRDRGLATELAYGAIRQRRRLDGWLDLLGKV--PAAKQPPRLR 103
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+L G+ +++ VP +S V +A +N VL R E S
Sbjct: 104 WLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGES 160
>gi|115454421|ref|NP_001050811.1| Os03g0656900 [Oryza sativa Japonica Group]
gi|31415975|gb|AAP50995.1| unknown protein [Oryza sativa Japonica Group]
gi|108710180|gb|ABF97975.1| antitermination NusB domain-containing protein, putative, expressed
[Oryza sativa Japonica Group]
gi|113549282|dbj|BAF12725.1| Os03g0656900 [Oryza sativa Japonica Group]
gi|125545109|gb|EAY91248.1| hypothetical protein OsI_12862 [Oryza sativa Indica Group]
Length = 287
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 38/107 (35%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
Y + L R I+ V +I+ + W + IL + + +
Sbjct: 176 YNNFVLRLAREILVAVASGWDKHVDIINKITPQNWKDEPVARILELCILHIAMAEMTSKG 235
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
P +++I+E V +A F G P+ IN L + + +
Sbjct: 236 TPHKIVINEAVDLAKRFCDGGAPRVINGCLRTFVKDHMNIDTSQPAP 282
>gi|163797843|ref|ZP_02191788.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
gi|159176887|gb|EDP61454.1| tRNA and rRNA cytosine-C5-methylase [alpha proteobacterium BAL199]
Length = 436
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 14/147 (9%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
++ +R A L++ + + + A D + D + R+++
Sbjct: 10 NKVSASRSVAFD-LFRAVLAKRTPLD----------EALAAHDGLAKLPERDRGFARLLV 58
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+ R H+D L+ +C+ + ++ ILR EL+ P + V
Sbjct: 59 ATTLRRLGHVDRLVDACIDK--PLPTKAAVVRDILRLAASELLILGVAP-HAAVDSAVNT 115
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ K NAVL ++ R+ +
Sbjct: 116 VRSRGHEPFVKLTNAVLRRLDREGRGE 142
>gi|228470129|ref|ZP_04055038.1| NusB family protein [Porphyromonas uenonis 60-3]
gi|228308267|gb|EEK17122.1| NusB family protein [Porphyromonas uenonis 60-3]
Length = 347
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + ++ + ++ D +++ L W R+ ++ ++ V E + C +
Sbjct: 245 SDRDRLYAHQLLSETLLHREEYDAMLTPRLDN-WEQDRVALVDMILMEMAVAEALSCPDI 303
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ V I+EY+ +A + FINAVLD++
Sbjct: 304 ALVVTINEYIELAKVYDNAKSASFINAVLDRL 335
>gi|46447257|ref|YP_008622.1| putative transcription termination factor, nusB [Candidatus
Protochlamydia amoebophila UWE25]
gi|46400898|emb|CAF24347.1| putative transcription termination factor, nusB [Candidatus
Protochlamydia amoebophila UWE25]
Length = 154
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ E ++ + + ++ + ID ISS + + F+R+ + +ILR GV E
Sbjct: 5 IMNELSISKKNVRLAQEKVQKIVVQLAEIDSKISSV-SLSYHFNRIQTVTKNILRLGVFE 63
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L +P +V+I+E + ++ F + F+NA+LD++ +K + +
Sbjct: 64 LFFETDIPQKVVIAEAIRLSRKFSTPESASFVNALLDQLYQKSKGEE 110
>gi|298346829|ref|YP_003719516.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
43063]
gi|298236890|gb|ADI68022.1| 16S rRNA m(5)C 967 methyltransferase [Mobiluncus curtisii ATCC
43063]
Length = 470
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + Y L + D + +++G + + D +I + L
Sbjct: 4 VDQDHAYANLVLPGLIERARLHRRDAAFATELVYGTLRLQGRYDAIIGLLSDR--DIAAL 61
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
D L ++LR G+ ++++ + V +A D +NAVL KV
Sbjct: 62 DSELVTVLRMGIHQILQMRVEDYAA-VDTMVDLARDRLSAGPAGMVNAVLRKV 113
>gi|332077717|gb|EGI88178.1| transcription antitermination factor NusB [Streptococcus pneumoniae
GA41301]
Length = 121
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ ++ V +K+ +D I+ L W+ RL ++ ++LR GV E+ P V
Sbjct: 30 AFLIDLVSDVQAKKEELDKQITQHLKAGWTIERLTLVERNLLRLGVFEITSFD-TPQLVA 88
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++E + +A DF +FIN +L + +E
Sbjct: 89 VNEAIELAKDFSDQKSARFINGLLSQFVTEENE 121
>gi|320352726|ref|YP_004194065.1| sun protein [Desulfobulbus propionicus DSM 2032]
gi|320121228|gb|ADW16774.1| sun protein [Desulfobulbus propionicus DSM 2032]
Length = 450
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 48/139 (34%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L S + +D + +I+GV+ +
Sbjct: 9 RAVAVEVLCLWATTHNSIDPLFQ-------------TAIEQLPDIDRGLVKTLIYGVLRQ 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
K+++D ++ + ++ LR GV +L+ +P ++ V
Sbjct: 56 KEYLDHILRTFAK--HPLRKMKPRTLMTLRIGVYQLLFLSRIPESAAVNATVNTLKAASQ 113
Query: 140 G-DEPKFINAVLDKVSRKE 157
F+N +L V+R+
Sbjct: 114 PAWLIGFVNGILRAVARQR 132
>gi|315023990|gb|EFT36992.1| Transcription termination protein NusB [Riemerella anatipestifer
RA-YM]
Length = 301
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
R + ++ + D + + ++ ++ + ++ + L W R+ ++ I
Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERLKN-WELDRISLMDRVI 248
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
L A + EL P +VII+EY+ I+ F FIN +L K +
Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYAEDIN 299
>gi|301320813|gb|ADK69456.1| transcription antitermination factor NusB [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
Length = 132
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +QA Y+ +++ S I + + D+ + I+ +
Sbjct: 8 SKKRKLLIQAFYKYELLNASIDYIHQDILD----------DVQNIKNKDVLF---EINQI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ + I+ ++ W + R+ ++ +IL G E++ + P V I+E V +
Sbjct: 55 SEKQTDLINHININISSSWKWDRMPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKLVK 132
>gi|242038659|ref|XP_002466724.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
gi|241920578|gb|EER93722.1| hypothetical protein SORBIDRAFT_01g012890 [Sorghum bicolor]
Length = 284
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S E S E A +L + L + E + G ID +I
Sbjct: 152 TSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDKHVDIIDKIIPQ----A 207
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
W + IL + + + P +V+I+E V +A F G P+ IN L
Sbjct: 208 WKDEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAKRFCDGGAPRVINGCLRTFV 267
Query: 155 RK 156
+
Sbjct: 268 KD 269
>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
Length = 440
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 3/114 (2%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
R +D + + D + I +GV+ ++ +S + + +
Sbjct: 21 RSLSDELPKQQDKLIGKDKGLLQEICYGVLRYLPELENDVSQL--VQKPIKGKQRVFHFL 78
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
L GV ++ +P +SE V +NAVL R E +
Sbjct: 79 LLVGVYQIRYMR-IPDHAAVSETVAATKTLKNDHMKGLVNAVLRGFLRALEAEN 131
>gi|254525327|ref|ZP_05137382.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
sp. SKA14]
gi|219722918|gb|EED41443.1| ribosomal RNA small subunit methyltransferase B [Stenotrophomonas
sp. SKA14]
Length = 443
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 16/164 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q++ K + R+ A + L Q+ G S ++ +
Sbjct: 1 MSKQNDFSIAK-AAPGAATRMLAARVLAQVFTRGRSLKAELAWAL------------PKL 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + V+ R+ D + S + + S D L ++L G +L
Sbjct: 48 ADSRDRALLEALCFAVLRRRSTYDAALQSWM--QKPLSARDADLRTLLMVGFAQLDVLE- 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +S V A + +NA+L + R+ ++
Sbjct: 105 LPAHAALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148
>gi|226509228|ref|NP_001150841.1| LOC100284474 [Zea mays]
gi|195642298|gb|ACG40617.1| RNA binding protein [Zea mays]
Length = 280
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 46/186 (24%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRF--------------------------C 50
AR A+ Y + G + + R
Sbjct: 84 RAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDXACLLSYNHMSFGGGPLEVG 143
Query: 51 ADTELDVESVYLHVD--------------------LEWFRVIIHGVMDRKQHIDLLISSC 90
+ E + + D L R ++ V +I
Sbjct: 144 TEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDKHVEIIDKI 203
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ + W + IL + + + P +V+I+E V +A F G P+ IN L
Sbjct: 204 IPQAWKDEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAKRFCDGGAPRVINGCL 263
Query: 151 DKVSRK 156
+
Sbjct: 264 RTFVKD 269
>gi|194688732|gb|ACF78450.1| unknown [Zea mays]
Length = 284
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 49/186 (26%), Gaps = 46/186 (24%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRF--------------------------C 50
AR A+ Y + G + + R
Sbjct: 84 RAARELALMISYAACLEGTDVVRLFDRRISARREPGFVFDKACLLSYNHMSFGGGPLEVG 143
Query: 51 ADTELDVESVYLHVD--------------------LEWFRVIIHGVMDRKQHIDLLISSC 90
+ E + + D L R ++ V +I
Sbjct: 144 TEEEAEKLTSQNEKDSANEADVLSAPPKLVYNNFVLRLSRELLVAVASGWDKHVEIIDKI 203
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ + W + IL + + + P +V+I+E V +A F G P+ IN L
Sbjct: 204 IPQAWKDEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAKRFCDGGAPRVINGCL 263
Query: 151 DKVSRK 156
+
Sbjct: 264 RTFVKD 269
>gi|283480068|emb|CAY75984.1| Ribosomal RNA small subunit methyltransferase B [Erwinia pyrifoliae
DSM 12163]
Length = 456
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+K R A + + Q+ G S + ++ + D
Sbjct: 27 PMKKM---TNLRCIAARTIEQVVEQGQSLSNVLP-------------AAQKSVGDKDAAL 70
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ + +GV+ ++ +IS ++ + + L ++ G+ +L+ +P ++
Sbjct: 71 LQELCYGVLRTLPQLEWIISKLMSRPMTGKQRA--LHFLIMVGLYQLMFTR-IPPHAALA 127
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
E V A IN VL + R+++
Sbjct: 128 ETVEAAVALKRPQLKGLINGVLRQFQRQQDE 158
>gi|219669868|ref|YP_002460303.1| sun protein [Desulfitobacterium hafniense DCB-2]
gi|219540128|gb|ACL21867.1| sun protein [Desulfitobacterium hafniense DCB-2]
Length = 453
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 15/136 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R AVQ L +I+ ++ + + + + ++++G +
Sbjct: 6 SRALAVQILRRIEEEKAYANLVMQKAL------------HDLSDPRERQLATLLVNGTLK 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D + + S+L + ILR L+++ +P V I+E V +
Sbjct: 54 HRLTLDYALRRH--LRKPLSQLPHEVRWILRISALQILYLSRIPAAVAINEGVELTKK-Q 110
Query: 139 YGDEPKFINAVLDKVS 154
G +N+VL +V
Sbjct: 111 QGKYTSLVNSVLRRVL 126
>gi|296117963|ref|ZP_06836546.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
gi|295969194|gb|EFG82436.1| sun protein [Corynebacterium ammoniagenes DSM 20306]
Length = 426
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + + + D + + +G + + +D +I + L + +
Sbjct: 5 DAFANLILPKSLRANQLEGRDAAFATELAYGTLRAEGVLDAIIGEHSSRG--LDTLAIEV 62
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
LR G +L+ P + V + + F+N ++ ++R
Sbjct: 63 LDALRVGTYQLMYTRVEP-HAAVDTTVRLVQAAGHEKAKGFVNGIMRSITR 112
>gi|313206914|ref|YP_004046091.1| nusb antitermination factor [Riemerella anatipestifer DSM 15868]
gi|312446230|gb|ADQ82585.1| NusB antitermination factor [Riemerella anatipestifer DSM 15868]
gi|325335649|gb|ADZ11923.1| NusB [Riemerella anatipestifer RA-GD]
Length = 301
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
R + ++ + D + + ++ ++ + ++ + L W R+ ++ I
Sbjct: 190 REGEPSHTLIKIIKDEEDRSFAQKLLQYSLNHWEDTEVKLKERLKN-WELDRVSLMDRVI 248
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
L A + EL P +VII+EY+ I+ F FIN +L K +
Sbjct: 249 LIAAITELDHFPLTPSKVIINEYIEISKAFSTDKSQVFINGLLGKYAEDIN 299
>gi|226509581|ref|NP_001146662.1| hypothetical protein LOC100280262 [Zea mays]
gi|219888225|gb|ACL54487.1| unknown [Zea mays]
Length = 555
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++
Sbjct: 136 LEDRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKLD- 194
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP + E V +A +NA+L K+
Sbjct: 195 VPAYAAVDENVRLAKVALRPGAGNMVNAILRKLV 228
>gi|190576005|ref|YP_001973850.1| putative sun protein [Stenotrophomonas maltophilia K279a]
gi|190013927|emb|CAQ47567.1| putative sun protein [Stenotrophomonas maltophilia K279a]
Length = 443
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 56/164 (34%), Gaps = 16/164 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q++ K + R+ A + L Q+ G S ++ +
Sbjct: 1 MSKQNDFSVAK-AAPGAATRMLAARVLAQVFTRGRSLKAELAWAL------------PKL 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + V+ R+ D + + + + S D L ++L G +L
Sbjct: 48 ADSRDRALLEALCFAVLRRRSTYDAALQAWM--QKPLSARDADLRTLLMVGFAQLDVLE- 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +S V A + +NA+L + R+ ++
Sbjct: 105 LPAHAALSATVDAARALGRERQAGLVNAILRRAQREGVPEQPAR 148
>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 420
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 16/138 (11%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A QA+ Q+ G S + ++ + D + + GV+
Sbjct: 1 MAAQAVEQVIEQGQSLSNVLPPLQQ-------------KVSDKDKALLQELCFGVLRTLS 47
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
++ LI+ ++ S + ++ G +L+ +P ++E V A
Sbjct: 48 QLEWLINKLMSR--PMSGKQRTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVSIKRPQ 104
Query: 142 EPKFINAVLDKVSRKEEI 159
IN VL + R+++
Sbjct: 105 LKGLINGVLRQFQRQQDE 122
>gi|323164853|gb|EFZ50644.1| ribosomal RNA small subunit methyltransferase B [Shigella sonnei
53G]
Length = 454
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
++ R A QA+ Q+ G S + I+ + D + +
Sbjct: 27 EKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELC 73
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 74 FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + ++E
Sbjct: 131 AIAIKRPQLKGLINGVLRQFQHQQEE 156
>gi|320534324|ref|ZP_08034813.1| putative ribosomal RNA small subunit methyltransferase B
[Actinomyces sp. oral taxon 171 str. F0337]
gi|320133459|gb|EFW25918.1| putative ribosomal RNA small subunit methyltransferase B
[Actinomyces sp. oral taxon 171 str. F0337]
Length = 463
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + EL + D + + +G + + D +I++C R+D +
Sbjct: 13 DAFANLLLPELLETADLDRRDAGFATALTYGTLRLQGRYDAMIAACTDR--PLERIDPAV 70
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
ILR G +L+ +S V +A F+NAV+ ++S
Sbjct: 71 LDILRLGAHQLMGMRVAQ-HAAVSTTVDLATTSCGRGAATFVNAVMRRLS 119
>gi|300811705|ref|ZP_07092180.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497332|gb|EFK32379.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 438
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ G Y + + + +++G
Sbjct: 2 KTNARTVALDTLMKVINQGS-----------YSNISLNHALKAAKLPGEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 GYGRPKSSGYRLVNGILRSLLRRREV 132
>gi|257791459|ref|YP_003182065.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
gi|257475356|gb|ACV55676.1| NusB/RsmB/TIM44 [Eggerthella lenta DSM 2243]
Length = 473
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 16/161 (9%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
K + ARLAA+ + + ++I S
Sbjct: 16 PKNPPKKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDR-----------SDLSSE 64
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + GV+ +D +I L + LR E+I P
Sbjct: 65 DRAFATKLALGVVSATGTLDEIIDRALNAPSDVKP---DVRDALRVSTYEIIFLGKTP-H 120
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ + V + F NAVL K+ + G
Sbjct: 121 AAVDQGVELVRSFAMS-ASGLANAVLRKIVLMRQAFPFGDP 160
>gi|115376613|ref|ZP_01463843.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
gi|115366356|gb|EAU65361.1| ribosomal RNA small subunit methyltransferase B [Stigmatella
aurantiaca DW4/3-1]
Length = 425
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
DT L D + +G R+ +D I+ ++ + + LR G
Sbjct: 13 DTALSEAPPRDARDTALATELAYGTTRRQLALDYAITRFADR--KLDAMEDRVLAALRIG 70
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+L VP ++E V D G F+NA+L K++
Sbjct: 71 AYQLFYTR-VPARAAVAETVQALKDLGVGRAAGFVNAILRKLA 112
>gi|229820540|ref|YP_002882066.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
gi|229566453|gb|ACQ80304.1| Fmu (Sun) domain protein [Beutenbergia cavernae DSM 12333]
Length = 480
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 3/134 (2%)
Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
+ + Y L E D + + +G + + D +++ +
Sbjct: 30 DVLRAVERDDAYANLVLPALLAERGLSGRDAAFATELAYGTLRMRGRYDAILA--IASTR 87
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
LD L +LR G +L+ V +SE V +A + + NAVL + R
Sbjct: 88 PPQELDPPLLDVLRLGAHQLLGMR-VAAHAAVSETVTLAREVVGAGASSYANAVLRAIGR 146
Query: 156 KEEIKRSGCVSAIT 169
E + ++ T
Sbjct: 147 AEPEEWDRRLAERT 160
>gi|42560661|ref|NP_975112.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|42492157|emb|CAE76754.1| transcription termination factor nusB [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
Length = 132
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +QA Y+ +++ S I + + D+ + I+ +
Sbjct: 8 SKKRKLLIQAFYKYELLNASIDYIHQDILD----------DVQNIKNKDVLF---EINQI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ + I+ ++ W + R+ ++ +IL G E++ + P V I+E V +
Sbjct: 55 SEKQTDLINHININISSSWKWDRIPAVIRAILIVGTYEILYT-NTPKSVTINEMVKYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKLVK 132
>gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
periodonticum ATCC 33693]
gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
periodonticum ATCC 33693]
Length = 434
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + E + + + I +GV+ K +D +I +
Sbjct: 18 SYSNIVLNDAFREFHFTAKEKAFITEIFYGVLRNKNFLDYMIEKNTKVIKK-----EWIR 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + +L S V + E IA KFIN L R ++++
Sbjct: 73 NLLRISIYQLTFMSSDAKGV-VWEATEIAKKHGIA-ISKFINGTLRNYLRNKDLE 125
>gi|83319809|ref|YP_424196.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283695|gb|ABC01627.1| rRNA methyltransferase RsmB (sun protein), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 428
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A L ++ + + +++ + D ++ ++HGV+
Sbjct: 11 NSRSIAFDILKKVFVNKAYSNVLLN------------KISKKNLNQQDKDFVFNLVHGVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K H+D L++ + + + L IL + ++I +S+P I++E V +
Sbjct: 59 SNKIHLDYLLAKLI----DVKKTSIDLQVILLISLYQMIYLNSIPNYAIVNESVNLIKTT 114
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ FINA+L+K R ++
Sbjct: 115 S-QKQANFINAILNKFLRFKD 134
>gi|332533679|ref|ZP_08409538.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036843|gb|EGI73304.1| ribosomal RNA small subunit methyltransferase B [Pseudoalteromonas
haloplanktis ANT/505]
Length = 431
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 17/150 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + LY + G S + + D + I +GV+
Sbjct: 8 RALAAETLYNVVDKGASLNQELPF-------------ASQGLPPKDKALLQQICYGVLRY 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + I +L G+ +L VP ISE V
Sbjct: 55 LPSLENYCQ--HLVEQPLKGKRRIFQFLLYVGIYQLQHMR-VPPHAAISETVNALAQLRA 111
Query: 140 GDEPKFINAVLDKVSRKE-EIKRSGCVSAI 168
INA+L R++ E++ + +
Sbjct: 112 LGLKGLINAILRSFQRQQAELEEKAKLIPV 141
>gi|78212348|ref|YP_381127.1| sun protein [Synechococcus sp. CC9605]
gi|78196807|gb|ABB34572.1| sun protein [Synechococcus sp. CC9605]
Length = 445
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 15/144 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L Q G + R D + +G + +
Sbjct: 15 RRLAWDVL-QAVAAGAYADVALERVLRER-----------DLKPSDRGLVTELAYGAIRQ 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DFF 138
++ +D + + L +L G+ +L+ +P ++ V +A
Sbjct: 63 RRTLDAWLDRLGKV--PALKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKG 120
Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
+N VL R E +
Sbjct: 121 LARLAPVVNGVLRAALRAREAGET 144
>gi|330720125|gb|EGG98529.1| Ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium IMCC2047]
Length = 436
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+R R A + L + S ++ + D + +
Sbjct: 1 MSKRFNLRAHATRILTSVVKNQQSLASLLPY-------------QPEILSSQDQALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV Q ++ I L + D+ + +L LE +P ISE V
Sbjct: 48 CFGVCRWYQRLNAQIDMLLDKPLKAKDTDVKVLLLLGLYQLE---FTRIPAHAAISETVQ 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
INA+L + R++E
Sbjct: 105 ACKQLKKASASGLINAILRRSQREKEA 131
>gi|256823833|ref|YP_003147796.1| sun protein [Kangiella koreensis DSM 16069]
gi|256797372|gb|ACV28028.1| sun protein [Kangiella koreensis DSM 16069]
Length = 443
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 17/138 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A AL+ I G S ++++ D FR ++ G
Sbjct: 16 RQQACLALHAIAFEGRSANDVLNS--------------IQFEQGSDNSLFRALVLGSCRY 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + L + + D++ I+ LE VP ISE V +
Sbjct: 62 FIRLESIAKQLLQKPFKPKDQDLLCLIIIGLYQLEYS---RVPDHAAISETVSVCEQLKK 118
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N VL R++
Sbjct: 119 PWATKLVNGVLRNFVRQQ 136
>gi|117618823|ref|YP_854784.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117560230|gb|ABK37178.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 430
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + Q+ G S + ++ + D + + +G +
Sbjct: 2 KTRAQAALVIQQVLDQGQSLSAVLP-------------AAQEKVAPRDRALLQELCYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D + + + I ++ G+ +LI +P ++E V
Sbjct: 49 RWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLIYTR-IPAHAAVAETVNAVKLL 105
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
IN VL R E+
Sbjct: 106 KGTSLRGLINGVLRNFQRSAEV 127
>gi|226355844|ref|YP_002785584.1| methyltransferase RsmB, Sun protein [Deinococcus deserti VCD115]
gi|226317834|gb|ACO45830.1| putative methyltransferase RsmB, Sun protein [Deinococcus deserti
VCD115]
Length = 420
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 54/154 (35%), Gaps = 22/154 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT ++ + AR AV+ L ++ T+ A +
Sbjct: 1 MTDTRPRRPAPYNP----ARELAVRVLLRVLHAD-----------TFAAPALDAALHSAR 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D I++G + + +S L+E + ++L AG E +
Sbjct: 46 LPARDSGLATHIVYGTLRHHLSLSTALSPLLSEDTHPK-----VRTLLLAGAFEKLYL-G 99
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P + SEYV +A P +NAVL +++
Sbjct: 100 TPPHAVASEYVNLARGARLAP-PGLVNAVLRRIA 132
>gi|284006133|emb|CBA71374.1| 16S rRNA methyltransferase B [Arsenophonus nasoniae]
Length = 426
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+++ R Q + Q+ S + ++ E++ D + +
Sbjct: 1 MNKKYNLRSICAQVIAQVIDQKQSLSTVLPEWQ-------------KNISDKDKSLLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ I +T+ I+ ++ G+ +L +P ++E V
Sbjct: 48 SFGVLRVLPLLEWFIQQLITK--PLKGKQRIIHYLIMVGIYQLRFTR-IPPHASLAETVD 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A+ INAVL + R+E+I
Sbjct: 105 GANALKLPQLKGLINAVLRQFQRQEQI 131
>gi|256384049|gb|ACU78619.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384881|gb|ACU79450.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455325|gb|ADH21560.1| ribosomal RNA small subunit methyltransferase B [synthetic
Mycoplasma mycoides JCVI-syn1.0]
Length = 419
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A L ++ + + +++ + D ++ ++HGV+
Sbjct: 2 NSRSIAFDILKKVFVNKAYSNVLLN------------KISKKNLNQQDKDFVFNLVHGVI 49
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K H+D L+ + + + L IL + ++I +S+P I++E + +
Sbjct: 50 SNKIHLDYLLGKLI----DVKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESINLIKTT 105
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ FINA+L+K R ++
Sbjct: 106 S-QKQANFINAILNKFLRFKD 125
>gi|77413313|ref|ZP_00789508.1| sun protein [Streptococcus agalactiae 515]
gi|77160627|gb|EAO71743.1| sun protein [Streptococcus agalactiae 515]
Length = 426
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + +S D I++G + RK ++ +S + ++ L
Sbjct: 11 AYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIVDRDKLELWVYHLL 70
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
+ +L+ ++P I+++ V IA + K INAVL +VS +
Sbjct: 71 L---LSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119
>gi|194367355|ref|YP_002029965.1| sun protein [Stenotrophomonas maltophilia R551-3]
gi|194350159|gb|ACF53282.1| sun protein [Stenotrophomonas maltophilia R551-3]
Length = 443
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 55/164 (33%), Gaps = 16/164 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q++ K + R+ A + L Q+ G S ++ +
Sbjct: 1 MSKQNDFSVAK-AAPGAATRMLAARVLAQVFTRGRSLKAELAWAL------------PKL 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + V+ R+ D + + + S D L ++L G +L
Sbjct: 48 ADSRDRALLEALCFAVLRRRSTYDAALQGWM--QKPLSARDADLRTLLMVGFAQLDVLE- 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+P +S V A + +NA+L + R+ ++
Sbjct: 105 LPAHAALSATVDAARALGRERQAGLVNAILRRAQREGFPEQPAR 148
>gi|159902963|ref|YP_001550307.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
gi|159888139|gb|ABX08353.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9211]
Length = 432
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 14/140 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+AA + L Q G + + + +D I +G + +
Sbjct: 3 RMAAWKVL-QAVSAGAYAETALDQVLN-----------KYSMKAIDKALTTEIAYGSIRQ 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++++D I + + L +L G+ ++ +PV +++ V +A +
Sbjct: 51 RKYLDSWIDNLAKISA--LKQPPRLRWLLHIGLYQIFLMERIPVSAVVNTTVQLAKNNNL 108
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+N +L R E
Sbjct: 109 NKLSSVVNGILRNAIRIREA 128
>gi|56751642|ref|YP_172343.1| transcription antitermination protein NusB [Synechococcus elongatus
PCC 6301]
gi|81301280|ref|YP_401488.1| transcription antitermination protein NusB [Synechococcus elongatus
PCC 7942]
gi|34222700|sp|Q8GIR7|NUSB_SYNE7 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|81561842|sp|Q5N1J7|NUSB_SYNP6 RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|25019707|gb|AAN71793.1| unknown [Synechococcus elongatus PCC 7942]
gi|56686601|dbj|BAD79823.1| N utilization substance protein B [Synechococcus elongatus PCC
6301]
gi|81170161|gb|ABB58501.1| transcription antitermination factor NusB [Synechococcus elongatus
PCC 7942]
Length = 213
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
++ ++ V + ++ ID ++ + + W R+ + ILR E++
Sbjct: 109 REEVRKFGGRLVLQVSNNRERIDRTLNDVMVD-WQLHRVPRLDQDILRLAAAEILFL-GT 166
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVS 166
P +V I+E V +A+ + + +FIN VL ++S + R+ S
Sbjct: 167 PEQVAINEAVELANRYSDEEGRRFINGVLRRLSTMLGKAARAARPS 212
>gi|301321426|gb|ADK70069.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma
mycoides subsp. mycoides SC str. Gladysdale]
Length = 423
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A L ++ + + +++ + ++ ++HGV+
Sbjct: 2 NSRYIAFDILKKVFVNKAYSNVLLN------------KISKKDLNQQTKDFIFNLVHGVI 49
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K H+D L++ + + + L IL + ++I +S+P I++E V +
Sbjct: 50 SNKIHLDYLLTKLI----DVKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT 105
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
+ FINA+L+K R ++
Sbjct: 106 S-QKQANFINAILNKFLRFKDT 126
>gi|83319650|ref|YP_424054.1| N utilization substance protein B (nusB), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283536|gb|ABC01468.1| N utilization substance protein B (nusB), putative [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 132
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +QA Y+ ++ S I + + + + I+ +
Sbjct: 8 SKKRKLLIQAFYKYQLLNASIDYIYQDVLD-------------DVQNFNNKQLLFEINLI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ + I+ ++ W + R+ ++ +IL G E++ P V I+E V +
Sbjct: 55 AEKQVDLINHININISSNWKWDRIPAVIRAILIVGTYEILYTD-TPKPVTINEMVNYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKIIK 132
>gi|77408116|ref|ZP_00784863.1| sun protein [Streptococcus agalactiae COH1]
gi|77173300|gb|EAO76422.1| sun protein [Streptococcus agalactiae COH1]
Length = 426
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + +S D I++G + RK ++ +S + ++ L
Sbjct: 11 AYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIVDRDKLELWVYHLL 70
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
+ +L+ ++P I+++ V IA + K INAVL +VS +
Sbjct: 71 L---LSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119
>gi|168823234|ref|ZP_02835234.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205354964|ref|YP_002228765.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858650|ref|YP_002245301.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224493261|sp|B5R1E5|RSMB_SALEP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493262|sp|B5RH47|RSMB_SALG2 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|205274745|emb|CAR39801.1| sun protein [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205340499|gb|EDZ27263.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206710453|emb|CAR34811.1| sun protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326630113|gb|EGE36456.1| ribosomal RNA small subunit methyltransferase B [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 429
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ + G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQET 131
>gi|145300988|ref|YP_001143829.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142853760|gb|ABO92081.1| ribosomal RNA small subunit methyltransferase B [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 430
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + Q+ G S + ++ + D + + +G +
Sbjct: 2 KTRAQAALVIQQVLDQGQSLSAVLP-------------AAQEKVAPRDRALLQELCYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D + + + I ++ G+ +LI +P ++E V
Sbjct: 49 RWLPRLDAAVGEMMDK--PLKNKSRIFHYLILVGLYQLIYTR-IPAHAAVAETVNAVKLL 105
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
IN VL R E+
Sbjct: 106 KGTSLRGLINGVLRNFQRSAEV 127
>gi|76797821|ref|ZP_00780086.1| sun protein [Streptococcus agalactiae 18RS21]
gi|76586835|gb|EAO63328.1| sun protein [Streptococcus agalactiae 18RS21]
Length = 426
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + +S D I++G + RK ++ +S + ++ L
Sbjct: 11 AYSNIALNKSLKKSRLSDKDRALVTEIVYGTVARKITLEWYLSHFIVDRDKLELWVYHLL 70
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP-KFINAVLDKVSRK 156
+ +L+ ++P I+++ V IA + K INAVL +VS +
Sbjct: 71 L---LSLYQLLYLDNIPDHAIVNDAVTIAKNRGNKKGAEKLINAVLRRVSSE 119
>gi|301155309|emb|CBW14775.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
parainfluenzae T3T1]
Length = 445
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q K + + R A Q + Q+ G S + ++ +V+S
Sbjct: 1 MVFQRKKTEKSTALS---VRAIAAQVILQVLDQGKSLSTLLP-------------EVQSQ 44
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + I G+ ++ +I L + I+ +L G+ +L+
Sbjct: 45 VKPQDLPLLQEITFGICRVLPRLENIIKKLLDK--PLKGKTRIVHCLLLVGLYQLLYMR- 101
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VP + E V +N VL + R++E
Sbjct: 102 VPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQE 139
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + +++ VP I E V IA + +N VL + R+
Sbjct: 2 LLRLSLYQMLYLDRVPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 51
>gi|298373502|ref|ZP_06983491.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
gi|298274554|gb|EFI16106.1| NusB family protein [Bacteroidetes oral taxon 274 str. F0058]
Length = 307
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 49/117 (41%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
I + + + +Y + + F V + K + S + KW R
Sbjct: 180 IDKTISKFTEDNISTSPLLPMYRDENEKEFVVKLSHTAFLKGDEYEQMISKIVPKWDVER 239
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ + +++ + E E +P+++ I+EY+ I+ + FIN +LD ++++
Sbjct: 240 ITKMDMVLMKMAIAEFKEFPLIPIDITINEYIEISKFYSTSKSYIFINGILDTIAKE 296
>gi|153853041|ref|ZP_01994450.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
gi|149753827|gb|EDM63758.1| hypothetical protein DORLON_00435 [Dorea longicatena DSM 13814]
Length = 51
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
ILR V E+ VP V I+E V +A + D F+N VL K++
Sbjct: 3 ILRLAVYEMKWDEDVPTGVAINEAVNLAKKYSSEDGASFVNGVLAKLA 50
>gi|225435806|ref|XP_002285757.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 288
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 2/138 (1%)
Query: 35 CSTTEIISEYETYRFCADTELDVESV--YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
E++ E L Y + L + R ++ V+D+ L+I
Sbjct: 147 EEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAP 206
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
W IL + + I +++I+E V +A F G P+ IN L
Sbjct: 207 PNWKNEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 266
Query: 153 VSRKEEIKRSGCVSAITQ 170
+ E S TQ
Sbjct: 267 FVKDLEGTGITRASETTQ 284
>gi|289643066|ref|ZP_06475197.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
gi|289507110|gb|EFD28078.1| NusB antitermination factor [Frankia symbiont of Datisca glomerata]
Length = 99
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
E+ ++ GV++R ID ++ S E+W+ R+ + +ILR G LEL+ +P V
Sbjct: 3 EYTVSLVEGVVERLADIDEML-SDHAEEWTLERMPPVDRNILRIGALELLWREDIPDGVA 61
Query: 127 ISEYVCIAHDFFYGDEPKFINA 148
I E V +A P F+N
Sbjct: 62 IDEAVALAGLVSTERSPVFVNG 83
>gi|148272956|ref|YP_001222517.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830886|emb|CAN01830.1| putative rRNA cytosine-C5-methylases [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 499
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 14/145 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A Y+ + E + Y + D + +G
Sbjct: 44 SPARRVA----YE-------VVSAVRESDAYANLLLPVRIRRAALSAQDAALATELAYGT 92
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + D +I L + +D + +LR V +L+ V ++E V +A
Sbjct: 93 LRMSGYYDRVIE--LAAGRPVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARA 149
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKR 161
F+N VL ++R E +
Sbjct: 150 VGSRSATGFVNGVLRTITRSEPAEW 174
>gi|332668432|ref|YP_004451220.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
gi|332337246|gb|AEE54347.1| NusB antitermination factor [Haliscomenobacter hydrossis DSM 1100]
Length = 312
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+++ +++ V + + +I L W R+ +I +++ ++EL+
Sbjct: 199 KPNAEATVDFGELLLRKVYHEDEALLKVIEPTL-RNWDVERVAIIDMILIKMALVELMTF 257
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
S+P +V ++E+V IA ++ FIN +LD++ ++ G +S
Sbjct: 258 KSIPSKVTLNEFVEIAKNYSTDKSKDFINGILDRLLKQL--LEEGKISK 304
>gi|313124106|ref|YP_004034365.1| transcription termination factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280669|gb|ADQ61388.1| Transcription termination factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 110
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 41/90 (45%)
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+ + ++ GV+D++ + +S+ L + W RL +IL + E++ +
Sbjct: 21 AYSQELVSGVIDKQTELRDKLSANLKQGWRLERLSKTSLAILEVALYEMLYSPVIEDRSA 80
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+E + + +F FIN +L ++
Sbjct: 81 INEALNLCDEFDDPKSKAFINGILANFVQE 110
>gi|311739502|ref|ZP_07713337.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
33035]
gi|311305318|gb|EFQ81386.1| RNA methyltransferase Sun [Corynebacterium pseudogenitalium ATCC
33035]
Length = 516
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 3/126 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + + D + I +G + +D +I+ C + + +
Sbjct: 94 DAFANLILPRALRKQKLKGRDAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAV 151
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
LR G +++ P + V + F N ++ +SR
Sbjct: 152 VDALRLGTYQVLYTRVEP-HAAVDTTVRLVEAAGEVKAKGFANGIMRTISRTPAKTWLDK 210
Query: 165 VSAITQ 170
++ +
Sbjct: 211 LAPQGE 216
>gi|318040449|ref|ZP_07972405.1| sun protein [Synechococcus sp. CB0101]
Length = 454
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 14/148 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q L + Y A + D + +G + +
Sbjct: 19 RRLAWQVLQAVAAG------------AYADGALERELGRTSLSPADRGLATELAYGAIRQ 66
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +D + R L +L G+ +L+ VP +S V +A
Sbjct: 67 RRLLDAWLDQLGKV--PAERQPPKLRWLLHIGLYQLLASDRVPPSAAVSTTVELAKRGGL 124
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
N +L R+ E + ++
Sbjct: 125 ARLAPVANGMLRAFLRRREAGDTLPLTP 152
>gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
Length = 441
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 57/156 (36%), Gaps = 19/156 (12%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q+ + +K R A + + Q+ G S + ++ +
Sbjct: 7 QNCESSMKKM---TNLRCIAARTIEQVVEQGQSLSNVLP-------------AAQKSVGD 50
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + +GV+ ++ +IS ++ + + L ++ G+ +L+ +P
Sbjct: 51 KDAALLQELCYGVLRTLPQLEWIISKLMSRPMTGKQRA--LHFLIMVGLYQLMFTR-IPP 107
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++E V A IN VL + R+++
Sbjct: 108 HAALAETVEAAVALKRPQLKGLINGVLRQFQRQQDE 143
>gi|289450433|ref|YP_003475239.1| putative ribosomal RNA small subunit methyltransferase B
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184980|gb|ADC91405.1| putative ribosomal RNA small subunit methyltransferase B
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 498
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 21/136 (15%)
Query: 20 RLAAVQALYQ----IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AA Q +Y D+ S ++ + + + I++G
Sbjct: 15 REAAAQVIYHCLALHDM--ASFDPVLRQTVNF-------------LSLPERNLAVAIVYG 59
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
M ID ++ +LD L S+LR V +L ++P +++E +
Sbjct: 60 TMTYLYTIDYVLGKHCKIG--LEKLDPWLKSVLRTAVWQLRYSRNLPETAVVNECCKLVK 117
Query: 136 DFFYGDEPKFINAVLD 151
+ + F NAV+
Sbjct: 118 KYRHQGMVDFANAVMR 133
>gi|313664987|ref|YP_004046858.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
gi|312949412|gb|ADR24008.1| transcription antitermination factor NusB [Mycoplasma leachii PG50]
Length = 132
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +QA Y+ ++ S I + + + + I+ +
Sbjct: 8 SKKRKLLIQAFYKYQLLNASIDYIYQDVLD-------------DVQNFNNKKLLFEINLI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+++ + I+ ++ W + R+ ++ +IL G E++ P V I+E V +
Sbjct: 55 AEKQVDLINHININISLNWKWDRIPAVIRAILIVGTYEILYTD-TPKPVTINEMVNYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKIIK 132
>gi|42560767|ref|NP_975218.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|42492263|emb|CAE76860.1| Sun family protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
Length = 432
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A L ++ + + +++ + ++ ++HGV+
Sbjct: 11 NSRYIAFDILKKVFVNKAYSNVLLN------------KISKKDLNQQTKDFIFNLVHGVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K H+D L++ + + + L IL + ++I +S+P I++E V +
Sbjct: 59 SNKIHLDYLLTKLI----DVKKTSIDLQIILLISLYQMIYLNSIPNYAIVNESVNLIKTT 114
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
+ FINA+L+K R ++
Sbjct: 115 S-QKQANFINAILNKFLRFKDT 135
>gi|327191218|gb|EGE58261.1| putative RNA methyltransferase - sun protein [Rhizobium etli
CNPAF512]
Length = 464
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 12/176 (6%)
Query: 1 MTIQDNKKDL---KLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYE--TYRFCADTE 54
M+ KK K S R RLA V+ L ++ +
Sbjct: 1 MSSDGTKKPFRKQKPSSDRPAGRLAPVKPGLQARAAAAKILAAVVDRKLPLDGALDHEHG 60
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D R I++ + ID I+S + L +L G +
Sbjct: 61 NPAYKALGESDRALVRAILNTTLRHLPRIDAAIASL--LESPLPEGARALHHVLSIGAAQ 118
Query: 115 LIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI--KRSGCVSA 167
++ VP + V A+ K +NAVL ++ R+++ G V+
Sbjct: 119 ILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDAVLAEIGKVAP 173
>gi|283769473|ref|ZP_06342369.1| transcription antitermination factor NusB [Bulleidia extructa
W1219]
gi|283103741|gb|EFC05127.1| transcription antitermination factor NusB [Bulleidia extructa
W1219]
Length = 124
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R + R AV +LY + I+ L +F ++
Sbjct: 2 SRSVQREKAVLSLYAYLSLPRDIHSIME--------------DSFGSLDKADPYFIRVVE 47
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
+ Q I+ L E W+F RL I +IL G E V +II E V +A
Sbjct: 48 NAQEHIQEYTNYINQVL-ENWTFDRLGTIEKAILLIGCAEFS-LKEVAAVIIIDEAVELA 105
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ D + IN VLD +
Sbjct: 106 KTYGEADSYRLINNVLDVI 124
>gi|116073315|ref|ZP_01470577.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
gi|116068620|gb|EAU74372.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9916]
Length = 456
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 2/117 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A D + +G + +++ +D + + L
Sbjct: 40 AYADVALERALRGQQLSGPDRGLVTELAYGAIRQRRWLDGWLDRLGKV--PARKQPPRLR 97
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+L G+ +L+ +P ++ V +A +N +L R +E
Sbjct: 98 WLLHVGLYQLLCMERIPAAAAVNTSVELAKRHGLNRLAPVVNGLLRGALRAQEAGEQ 154
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGL-------------HNTISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|218202330|gb|EEC84757.1| hypothetical protein OsI_31764 [Oryza sativa Indica Group]
Length = 570
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +
Sbjct: 151 LDNRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-N 209
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VP + E V +A +NA+L K+ +E
Sbjct: 210 VPAYAAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249
>gi|289824193|ref|ZP_06543788.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 403
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ + G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|16762874|ref|NP_458491.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144361|ref|NP_807703.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213425783|ref|ZP_03358533.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213859535|ref|ZP_03385239.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289806045|ref|ZP_06536674.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|46396982|sp|Q8Z1X1|RSMB_SALTI RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|25303750|pir||AH1009 sun protein [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16505181|emb|CAD09177.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi]
gi|29139999|gb|AAO71563.1| sun protein [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
Length = 429
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ + G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|309807733|ref|ZP_07701667.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
LactinV 01V1-a]
gi|308168993|gb|EFO71077.1| rRNA methyltransferase RsmB family protein [Lactobacillus iners
LactinV 01V1-a]
Length = 160
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+S +D I++G + K +++ + S + K + L +L +
Sbjct: 1 MEKSQLSPIDKALTTQIVYGTVQYKLYLEYQLKSLVKTKLK----EDYLWPLLLMSAYQY 56
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGD--EPKFINAVLDKVSRKEEI 159
+P I+ E +A + + +N +L + R+ EI
Sbjct: 57 FFLDKIPTASIVDEANKLAKSYSPKGSQSYRLVNGILRSLVRRGEI 102
>gi|238792967|ref|ZP_04636597.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
gi|238727821|gb|EEQ19345.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
intermedia ATCC 29909]
Length = 429
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGLQ-------------KNISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + I ++ G+ +L+ +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RIFHYLIMIGLYQLVYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|119485390|ref|ZP_01619718.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
gi|119457146|gb|EAW38272.1| transcription antitermination protein NusB [Lyngbya sp. PCC 8106]
Length = 210
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ I+ + R+ ID +++ L + W +RL I ILR V EL+
Sbjct: 109 QEEVAAYAIEILTEIHARRTEIDEILNQALVD-WQINRLPRIDRDILRIAVTELLYL-GT 166
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+V ++E + +A + D +FIN VL +V + +
Sbjct: 167 QEQVALNEAIELAKRYSDEDSYRFINGVLRRVLDQLKA 204
>gi|241668134|ref|ZP_04755712.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254876669|ref|ZP_05249379.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254842690|gb|EET21104.1| tRNA and rRNA cytosine-C5-methylase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 425
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
I S +II + +E D + +++ + ++ + S L
Sbjct: 6 IAAKSILDIIDN--KHSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYL 63
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
EK +++ IL+ + P I+E V + K +N VL
Sbjct: 64 AEKTKLKAKILVMLGILQI------FEINQPHYASINETVAACKNLKILWAKKLVNGVLR 117
Query: 152 KVSRKEE 158
++ R E
Sbjct: 118 QIVRDLE 124
>gi|223986295|ref|ZP_03636307.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
12042]
gi|223961734|gb|EEF66234.1| hypothetical protein HOLDEFILI_03617 [Holdemania filiformis DSM
12042]
Length = 115
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 15/127 (11%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
LYQ ++ EII + + Q+I+
Sbjct: 4 LYQHRLLNKPMDEIIE---------EVMEMKTGELDDFSRILILDTLDNENRYIQYINET 54
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ SF RL ++ +IL EL + +II E V +A D+ + + I
Sbjct: 55 LKDW-----SFERLGVLEQAILLMACSELDH-QTASAAIIIDEAVRLAKDYCDDEAYRLI 108
Query: 147 NAVLDKV 153
N VLD++
Sbjct: 109 NGVLDRI 115
>gi|115479747|ref|NP_001063467.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|52077347|dbj|BAD46388.1| sunL protein-like [Oryza sativa Japonica Group]
gi|113631700|dbj|BAF25381.1| Os09g0477900 [Oryza sativa Japonica Group]
gi|222641777|gb|EEE69909.1| hypothetical protein OsJ_29754 [Oryza sativa Japonica Group]
Length = 570
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ D+ VI+ G + K+++D LI S +E+ F ++ +L ILR G E+++ +
Sbjct: 151 LDNRDIRLVTVIVAGTVRWKRYLDYLIMSLCSEEKVFREMEPLLLQILRIGFFEILKL-N 209
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
VP + E V +A +NA+L K+ +E
Sbjct: 210 VPAYAAVDENVRLAKVALRPGAGNLVNAILRKLLLLKEAN 249
>gi|323342016|ref|ZP_08082249.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464441|gb|EFY09634.1| hypothetical protein HMPREF0357_10429 [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 134
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 8/142 (5%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ R R A+ A+Y + S E++ E RF ++ ++ L +
Sbjct: 1 MVMSRYNERQNAMSAIYIHLLREQSMQEVL---EDNRFVSEVGTFIQDFNLQDE---MLQ 54
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
++ V RK I LT+ W F RL I +IL EL VI++E V
Sbjct: 55 VVMNVEARKDIYSRAIDHYLTK-WRFDRLGFIEQAILLMACAELE-LGYQDKVVIVNEAV 112
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+A DF + K IN V+D +
Sbjct: 113 NLAKDFSDEESYKLINGVIDAL 134
>gi|332884936|gb|EGK05191.1| hypothetical protein HMPREF9456_03104 [Dysgonomonas mossii DSM
22836]
Length = 308
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVY-----LHVDLEWFRVIIHGVMDRKQHIDLLIS 88
I S D E D E+ ++ + + LI
Sbjct: 172 NDDIEIIQSFVLKTIKRFDENKGTEQELLPMFKDETDKEFAVKLLRESLFNGKEYRELID 231
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
T+ W R+ ++ I++ + E+IE S+P+ V ++EY+ IA + FIN
Sbjct: 232 KY-TKNWESERIALMDMVIMQIAIAEIIEFPSIPISVSLNEYIDIAKSYSTIKSASFING 290
Query: 149 VLD 151
+LD
Sbjct: 291 ILD 293
>gi|257126675|ref|YP_003164789.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
gi|257050614|gb|ACV39798.1| NusB antitermination factor [Leptotrichia buccalis C-1013-b]
Length = 138
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ ++I + + I++ E++ + ++++ R +
Sbjct: 3 RREIREEIFKLLFEHELIDNNIEKRINDVIN----------EENLKKNDEIDFLRSYVTE 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+++ + + I + + W++ RL I +L+ E+ ++ E+ I+E + IA
Sbjct: 53 IIENENILIEKI-KNILDGWTYERLGTIEKVLLKISFYEITI-KNIGYEIAINEVLEIAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIK 160
+ Y D +F+N +L K+ + + +
Sbjct: 111 KYSYNDTKEFLNGILAKLVKDIKEE 135
>gi|187734931|ref|YP_001877043.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
gi|187424983|gb|ACD04262.1| NusB antitermination factor [Akkermansia muciniphila ATCC BAA-835]
Length = 294
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I + ++ + + ++ R+ +D I S L R
Sbjct: 175 LIHPDDRPSLAEIKKVVEAGRDAEELYREAKTLGEDILRRRDGLDAAIDSTLENYSP-ER 233
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ I +ILR G EL+ +P ++ISE + ++ F + P+FIN VL +S+
Sbjct: 234 VSAIDRAILRLGAYELLHRKDLPAPIVISEAIRLSERFSSAESPRFINGVLAGISKTGR 292
>gi|88801025|ref|ZP_01116574.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
gi|88776228|gb|EAR07454.1| hypothetical protein MED297_05044 [Reinekea sp. MED297]
Length = 427
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 16/143 (11%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
RL A + L Q+ G S + + + + + +++G
Sbjct: 2 TNTRLIAAEILLQVVDEGRSLNDELPRRLKH-------------IDPDQQAFLQQLVYGS 48
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+D LI+ L + + ++ +L G+ +L V I+E V
Sbjct: 49 TRYYFALDELIN--LLVEKPIRGKERLVHMLLAIGLYQLWHLD-VAEHAAINETVEATLT 105
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+NA L + R+ E
Sbjct: 106 AKKQWAKNLVNASLRRFQRERET 128
>gi|86147131|ref|ZP_01065447.1| Sun protein [Vibrio sp. MED222]
gi|218711000|ref|YP_002418621.1| ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
gi|85835015|gb|EAQ53157.1| Sun protein [Vibrio sp. MED222]
gi|218324019|emb|CAV20381.1| Ribosomal RNA small subunit methyltransferase B [Vibrio splendidus
LGP32]
Length = 426
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELMENSLKGKKRVFHH--LILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLSGLINAVLRSYLRDQEELDEKAVS 134
>gi|197287099|ref|YP_002152971.1| 16S rRNA methyltransferase B [Proteus mirabilis HI4320]
gi|224493257|sp|B4F1L5|RSMB_PROMH RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|194684586|emb|CAR46442.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
HI4320]
Length = 422
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + +I E + D + + G +
Sbjct: 8 RSIAAKAIAQVLDQGLSLSSVIPELQ-------------KNISDKDKALLQELCFGTLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + IL ++ G+ +L+ VP ++E V A
Sbjct: 55 LPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALAETVNGAIALKK 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++++
Sbjct: 112 PQLKGLINGVLRQFQRQQDV 131
>gi|333014516|gb|EGK33864.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
K-227]
Length = 454
Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
++ R A A+ Q+ G S + I+ + D + +
Sbjct: 27 EKQRNLRSMAAHAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELC 73
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 74 FGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEG 130
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 131 AIAIKRPQLKGLINGVLRQFQRRQEE 156
>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
Length = 429
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I E + ++ + D + + +GV+ ++ +IS ++ +
Sbjct: 12 ARTIEQVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWIISKLMSRPMT 71
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ L ++ G+ +L+ +P ++E V A IN VL + R+
Sbjct: 72 GKQRA--LHFLIMVGLYQLMFTR-IPPHAALAETVEAAVALKRPQLKGLINGVLRQFQRQ 128
Query: 157 EEI 159
++
Sbjct: 129 QDE 131
>gi|227354905|ref|ZP_03839319.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
gi|227164987|gb|EEI49826.1| ribosomal RNA small subunit methyltransferase B [Proteus mirabilis
ATCC 29906]
Length = 422
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + +I E + D + + G +
Sbjct: 8 RSIAAKAIAQVLDQGLSLSSVIPELQ-------------KNISDKDKALLQELCFGTLRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + IL ++ G+ +L+ VP ++E V A
Sbjct: 55 LPQLEWIIQQLMDK--PLKGKQRILHYLIMVGLYQLLYTR-VPAHAALAETVNGAIALKK 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++++
Sbjct: 112 PQLKGLINGVLRQFQRQQDV 131
>gi|325294320|ref|YP_004280834.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064768|gb|ADY72775.1| sun protein [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 442
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 17/135 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A++ L + +E + + S D + R I+ G +
Sbjct: 7 RLIAIKIL--------------NRFEKDKKLKEHIEKFTSRLHPQDRAFIREIVSGTVRF 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D I + R + + LR ++ +VP ++E V
Sbjct: 53 LRLLDFSIEK--ATGKNLKRQKNTVRNSLRVIAYQI-FFTNVPPYAALNETVEAVKKILG 109
Query: 140 GDEPKFINAVLDKVS 154
F+NA+ K+
Sbjct: 110 KKAAGFVNAISKKII 124
>gi|320087854|emb|CBY97617.1| Ribosomal RNA small subunit methyltransferase B rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 429
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA + E + ++ ++ D + +
Sbjct: 1 MKKQNNLRSLAAQA-------------VELVVEQGQSLSNVFPPLQQKVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVAIKRPQLKGLINGVLRQFQRQQET 131
>gi|238763703|ref|ZP_04624662.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
gi|238698005|gb|EEP90763.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
kristensenii ATCC 33638]
Length = 429
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPRL-------------HKNISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + I ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIKQLMARPMTGKQ--RIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|330831512|ref|YP_004394464.1| ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
gi|328806648|gb|AEB51847.1| Ribosomal RNA small subunit methyltransferase B [Aeromonas veronii
B565]
Length = 430
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 16/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + Q+ G S + ++ + D + + +G +
Sbjct: 2 KTRAQAALVIQQVLDQGQSLSAVLP-------------AAQEKVAPRDRALLQELCYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D ++ + + I ++ G+ +LI +P ++E V
Sbjct: 49 RWLPRLDAAVNEMMDK--PLKNKSRIFHYLILVGLYQLIYTR-IPAHAAVAETVNAVKLL 105
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
IN VL R E+
Sbjct: 106 KGTSLRGLINGVLRNFQRSAEV 127
>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
Length = 428
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R A QA+ ++ G S + ++ + D + +
Sbjct: 2 KKQNLRSMAAQAVEKVIEQGQSLSNVLPPLQQ-------------KVSDKDKALLQELCF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV+ ++ +IS + + + + ++ G +L+ +P ++E V A
Sbjct: 49 GVLRTLSQLEWMISRLMARPMTGKQRS--VHYLIMVGFYQLLHTR-IPPHAALAETVEGA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 106 IAIKRPQLKGLINGVLRQFQRQQEE 130
>gi|148978298|ref|ZP_01814803.1| Sun protein [Vibrionales bacterium SWAT-3]
gi|145962457|gb|EDK27735.1| Sun protein [Vibrionales bacterium SWAT-3]
Length = 426
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSHALP-------------AAQKTISPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELM--ENPLKGKKRVFHHLILVGIYQLSFMR-IPSHAAVAETVEGTKTLRG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLSGLINAVLRSYLRDQEELDEKAVS 134
>gi|315635055|ref|ZP_07890336.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
gi|315476317|gb|EFU67068.1| RNA methyltransferase Sun [Aggregatibacter segnis ATCC 33393]
Length = 453
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 54/158 (34%), Gaps = 16/158 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q + K + R A + + Q+ G S + +I + +S
Sbjct: 1 MEKQYSSKKIPPKTTALSTRAMAAKVILQVLDEGKSLSTLIP-------------EAQSS 47
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + I G+ ++ +I + + I+ +L G+ +L+
Sbjct: 48 VKAQDLPLLQEICFGICRVLPRLEQIIKRLVDK--PLKGKTRIVHCLLLVGLYQLLYMR- 104
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P + E V +N VL + R+++
Sbjct: 105 IPAHAAVDEVVNATKSLKSDSFRGLVNGVLRRFLREQD 142
>gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
Length = 431
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 17/144 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A++A+ + G S + + + D + + +G +
Sbjct: 2 NARQQALRAITSVQQ-GQSLSAALPDLLA-------------PLPKRDRGLCQELSYGSL 47
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ L S K F D L ++L G+ +L E +P +S V + +
Sbjct: 48 RYYHRYEWL--SQQLLKKPFKHKDSDLQAVLALGLYQLFEMR-IPDHAAVSNTVALVNGL 104
Query: 138 FYGDEPKFINAVLDKVSRKEEIKR 161
INAVL R+ + R
Sbjct: 105 KKSWAKGVINAVLRNALRQRDEWR 128
>gi|84393439|ref|ZP_00992196.1| Sun protein [Vibrio splendidus 12B01]
gi|84375955|gb|EAP92845.1| Sun protein [Vibrio splendidus 12B01]
Length = 426
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 16/147 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA L+Q+ G S + + + D + I +G +
Sbjct: 4 RAAAANVLFQVVDKGHSLSHALP-------------AAQKTIRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + ++ G+ +L +P ++E V
Sbjct: 51 LPRLESIANELMENSLKGKKRVFHH--LILVGIYQLSFMR-IPSHAAVAETVEATKTLRG 107
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVS 166
INAVL R +E VS
Sbjct: 108 PSLSGLINAVLRSYLRDQEELDEKAVS 134
>gi|237756907|ref|ZP_04585380.1| transcription termination factor [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690928|gb|EEP60063.1| transcription termination factor [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 169
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 63/169 (37%), Gaps = 24/169 (14%)
Query: 14 HRR--GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+R AR +++ L+ D ++ E+ + E+
Sbjct: 13 RKRLLKAARDLSMRVLFAYDFRKEDLFNVLEEFLN-----------TKKFPSEIKEYVLK 61
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG---------VLELIECHSVP 122
+I+ + Q +D +I S L W F R+ I ++LR G E E
Sbjct: 62 VINFYNENSQEVDDIIKSHLKN-WRFERIGYIERAVLRLGVSELLIIHSKEESKELKDKE 120
Query: 123 VEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ ++ + + + + KF+N +L K++++ E + +TQ
Sbjct: 121 IRILFLDLLDLVECYTNSKLSVKFVNGILGKINKELEQNENSIHIGLTQ 169
>gi|56750589|ref|YP_171290.1| sun protein [Synechococcus elongatus PCC 6301]
gi|56685548|dbj|BAD78770.1| sun protein [Synechococcus elongatus PCC 6301]
Length = 405
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G + R++ +D LI L + ++ +L ++L+ G+ +L +P ++
Sbjct: 1 MTELVYGCVRRQRTLDALID--LLAQRPAAQQPPVLRTVLQLGLYQLRYLEQIPTAAAVA 58
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
E V +A G +NA+L + R+ E +
Sbjct: 59 ETVQLAKQLGLGGLSGAVNAILRQYLRQSEERDP 92
>gi|260434429|ref|ZP_05788399.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 8109]
gi|260412303|gb|EEX05599.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
WH 8109]
Length = 445
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 41/144 (28%), Gaps = 15/144 (10%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L Q G + D + +G + +
Sbjct: 15 RRLAWDVL-QAVAAGAYADVALERVLRM-----------QDLKPSDRGLVTELAYGAIRQ 62
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DFF 138
++ +D + ++ L +L G+ +L+ +P ++ V +A
Sbjct: 63 RRTLDAWLDRLGKV--PAAKQPPKLRWLLHVGLYQLLLMERIPDSAAVNTAVELAKTSKG 120
Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
+N VL R E +
Sbjct: 121 LARLAPVVNGVLRAALRAREAGET 144
>gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926]
gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926]
Length = 434
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y E E+ + + + +GV+ +D I T+ L
Sbjct: 18 KYSNILLNEYFRENNLSRGEKAFITEVFYGVIRNIIFLDYQIDKRATK----KVHRRWLR 73
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
++LR + S V E +A +F N ++ R+ + +
Sbjct: 74 NLLRISYYQAYFMRSDDAGVAW-EATELAKQKLGVYVGRFANGIVRSFMREMDQE 127
>gi|53729217|ref|ZP_00348347.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209024|ref|YP_001054249.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae L20]
gi|165976991|ref|YP_001652584.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|190150891|ref|YP_001969416.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252922|ref|ZP_07339079.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307248606|ref|ZP_07530620.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250839|ref|ZP_07532767.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307255464|ref|ZP_07537270.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257633|ref|ZP_07539392.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259916|ref|ZP_07541629.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307264244|ref|ZP_07545834.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097816|gb|ABN74644.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877092|gb|ABY70140.1| SUN protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|189916022|gb|ACE62274.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648230|gb|EFL78429.1| SUN protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306854817|gb|EFM87006.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857089|gb|EFM89217.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306861506|gb|EFM93494.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306863808|gb|EFM95732.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306865944|gb|EFM97819.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306870415|gb|EFN02169.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 432
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A Q + Q+ G S +I + ++ DL + I
Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIP-------------EAQAKLEAKDLPLVQEITF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ +I+ + ++ +L G+ +L+ VP + E V A
Sbjct: 49 GVCRTLPRLEAVIAQ--AVEKPLKGKTRLVHCLLLVGLYQLLYMR-VPEFAAVDEVVNAA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ IN VL + R+++
Sbjct: 106 RSLKLDNFKALINGVLRRFLREKD 129
>gi|307262046|ref|ZP_07543700.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868225|gb|EFN00048.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 432
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A Q + Q+ G S +I + ++ DL + I
Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIP-------------EAQAKLEAKDLPLVQEITF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ +I+ + ++ +L G+ +L+ VP + E V A
Sbjct: 49 GVCRTLPRLEAVIAQ--AVEKPLKGKTRLVHCLLLVGLYQLLYMR-VPEFAAVDEVVNAA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ IN VL + R+++
Sbjct: 106 RSLKLDNFKALINGVLRRFLREKD 129
>gi|50365148|ref|YP_053573.1| transcription termination factor [Mesoplasma florum L1]
gi|50363704|gb|AAT75689.1| transcription termination factor [Mesoplasma florum L1]
Length = 134
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
+++ L ++ RR VQ Y+ ++ I + + +D
Sbjct: 2 SEQKLSMTKRRT----YLVQMFYRYLLMNNDVNYIKQDIL------------DETQEKLD 45
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+E +I + + ++ + I L+ W + R+ + SIL G E+I P V
Sbjct: 46 VE-TTLIANNIAEKLSDLKKEIIKHLSANWKWERIPTYIQSILIIGAYEIIFTP-TPKAV 103
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
I+E V + + + KF+NA LDKV +
Sbjct: 104 TINELVNLVKENEVDFDYKFVNACLDKVIK 133
>gi|307246481|ref|ZP_07528553.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306852544|gb|EFM84777.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 432
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A Q + Q+ G S +I + ++ DL + I
Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIP-------------EAQAKLEAKDLPLVQEITF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ +I+ + ++ +L G+ +L+ VP + E V A
Sbjct: 49 GVCRTLPRLEAVIAQ--AVEKPLKGKTRLVHCLLLVGLYQLLYMR-VPEFAAVDEVVNAA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ IN VL + R+++
Sbjct: 106 RSLKLDNFKALINGVLRRFLREKD 129
>gi|167627567|ref|YP_001678067.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|167597568|gb|ABZ87566.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 425
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S +II Y +E D + +++ + ++ + S L EK
Sbjct: 9 KSILDIIDNR--YSLLTIEHKLIEHNLSDKDKSFVKLLCYEFFRNYYSLENVASLYLAEK 66
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ +++ IL+ + P I+E V + K +N VL ++
Sbjct: 67 TKLNAKILVMLGILQI------FEINQPHYASINETVSACKNLKILWAKKLVNGVLRQIV 120
Query: 155 RKEEIKRS 162
R E R
Sbjct: 121 RDLEDIRP 128
>gi|282891223|ref|ZP_06299726.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498916|gb|EFB41232.1| hypothetical protein pah_c048o056 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 417
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA A+Y G +E + ++ + +D + + I +G +
Sbjct: 6 AREAAFLAVYSFLKEGKFLSESLENWKQ-----------KESPSSLDFSFAQDIAYGSVR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D I+ E+ S S L + S+LR + + S P+ I E +A +
Sbjct: 55 MALALDY-IAKSTAERQSLS-LKVKERSLLRTAIYQAAFQRSTPLYAIGQESGNLAKKYC 112
Query: 139 YGDEPKFINAVLDKV 153
+ F+NA+L K+
Sbjct: 113 HPTFSSFLNALLRKL 127
>gi|86741875|ref|YP_482275.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
gi|86568737|gb|ABD12546.1| putative RNA-binding Sun protein [Frankia sp. CcI3]
Length = 491
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 16/156 (10%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + + RL A + L +D G ++ S D
Sbjct: 10 RGPRPASSVDRPRLLAWEVLRAVDERGSYANLLLPSLLA-----------GSGLSARDRG 58
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + +G + + +D ++ + + +D + LR G +L+ VP +
Sbjct: 59 FVTELAYGSLRAQGTLDGVLDTATSR--PVHTIDPPVRDALRLGAYQLL-RTRVPAHAAV 115
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V + +F NAVL +V+ + +G
Sbjct: 116 ASTVELVRTTSGERPVRFANAVLRRVA--ARVAETG 149
>gi|262376795|ref|ZP_06070022.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
lwoffii SH145]
gi|262308140|gb|EEY89276.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
lwoffii SH145]
Length = 435
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 27/160 (16%)
Query: 1 MT-IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ IQ + K+L L R V+ L + G S +++++
Sbjct: 1 MSQIQSSAKNLNL-------RAQVVKTLLAVQ-NGQSLASVLNQHINI------------ 40
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + + G + + + + LT+ + L S L G+ +++ C
Sbjct: 41 -VSERDRGLYHELTLGCLRQWHGLKAITLPLLTKPLD----NQALESCLYLGLYQIL-CT 94
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P ISE V A + +NAVL +VSR+ E
Sbjct: 95 RIPAHAAISETVTAAKQLGFEPLSGLVNAVLRRVSRETEE 134
>gi|209551488|ref|YP_002283405.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209537244|gb|ACI57179.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 462
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 25/180 (13%)
Query: 2 TIQDNKKDLKLSHRRG-----------IARLAAVQALYQIDIIGCSTTEIISEYETYRFC 50
KK + H+R AR AA + L + +
Sbjct: 4 NSDGTKKPFR-KHKRSTERSAPVKPGLQARAAAAKILGAVVERKLPLDGALDH------- 55
Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRA 110
+ D R I++ + ID ISS + L +L
Sbjct: 56 -EHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAISSL--LESPLPEGARALQHVLAI 112
Query: 111 GVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
GV +++ VP + V A+ K +NAVL ++ R+++ + G + +
Sbjct: 113 GVAQILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKD-EVLGEIDKVA 170
>gi|119471679|ref|ZP_01614064.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
gi|119445458|gb|EAW26745.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Alteromonadales
bacterium TW-7]
Length = 431
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A + LY + G S + + D + I
Sbjct: 1 MNKVQNVRALAAETLYNVVDKGASLNQELPF-------------ASQGLPPKDKALLQQI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+ ++ + I +L G+ +L VP ISE V
Sbjct: 48 CYGVLRYLPSLENYCQ--HLVESPLKGKRRIFQFLLYVGIYQLQHMR-VPPHAAISETVN 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE-EIKRSGCVSAI 168
INA+L R++ E++ + +
Sbjct: 105 ALGQMRALGLKGLINAILRSFQRQQAELEEKAKLIPV 141
>gi|228922619|ref|ZP_04085919.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228837048|gb|EEM82389.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 368
Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50
>gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis NCFD 2020]
gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis NCFD 2020]
Length = 440
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 15/143 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ +AR A+ L E I E + Y A D I++G
Sbjct: 6 KKLARGKALIVL-----------EDIFENDAYSNLALNNQLTNIALSSKDKGLITEIVYG 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ RK ++ ++ + ++ + L + +L+ VP I+++ V IA
Sbjct: 55 TLSRKMTLEWYLAHFIEDRDKIEKWVYYLLL---LSLYQLLYLDKVPAHAIVNDAVNIAK 111
Query: 136 DFFYGDEP-KFINAVLDKVSRKE 157
+ K++NA+L +S +
Sbjct: 112 NRGNKRGAEKYVNAILRLLSENK 134
>gi|225461943|ref|XP_002266112.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|296089930|emb|CBI39749.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I+ G + ++++D LI S + +F ++ +L ILR G E++ P V +
Sbjct: 114 VTDIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAV-VD 172
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A +NA+L K+
Sbjct: 173 ENVRLAKVALRPGAGNMVNAILRKLV 198
>gi|119475266|ref|ZP_01615619.1| sun protein [marine gamma proteobacterium HTCC2143]
gi|119451469|gb|EAW32702.1| sun protein [marine gamma proteobacterium HTCC2143]
Length = 434
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E D +R + +GV+ ++ + + L + D + ++ G+ +L E
Sbjct: 33 EQQVAEKDRSLYRQLCYGVLRFYPKLNGI--AKLLIQKPLKGKDHDVLMLVLIGIYQLSE 90
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P +S V F+N VL + R E+
Sbjct: 91 MR-IPDHAAVSTTVNATKSLKKHWAKGFVNGVLRQWQRNEQ 130
>gi|332829206|gb|EGK01870.1| hypothetical protein HMPREF9455_02018 [Dysgonomonas gadei ATCC
BAA-286]
Length = 308
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
I+II + I +E + A L + D E+ ++ + + LI
Sbjct: 175 IEIIESFVLKTIKRFEENKGAAQELLPMFKD--DSDREFAVKLLRESLWNGKEYRELIDK 232
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
T+ W R+ ++ I++ + E++ S+P+ V ++EY+ IA + FIN +
Sbjct: 233 Y-TKNWESERIALMDMVIMQIAIGEIVSFPSIPISVTLNEYIDIAKSYSTAKSASFINGI 291
Query: 150 LD 151
LD
Sbjct: 292 LD 293
>gi|238788880|ref|ZP_04632670.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
gi|238722907|gb|EEQ14557.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
frederiksenii ATCC 33641]
Length = 429
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGL-------------HKSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|255325042|ref|ZP_05366148.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
gi|255297607|gb|EET76918.1| Fmu protein [Corynebacterium tuberculostearicum SK141]
Length = 516
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 3/126 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + + + D + I +G + +D +I+ C + + +
Sbjct: 94 DAFANLILPKALRKQKLKGRDAAFATEITYGTLRTLGVVDAVIAECSSRG--LEAISPAV 151
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
LR G +++ P + V + F N ++ ++R
Sbjct: 152 VDALRLGTYQVLYTRVEP-HAAVDTTVRLVEAAGEVKAKGFANGIMRTITRTPAKAWLDK 210
Query: 165 VSAITQ 170
++ +
Sbjct: 211 LAPQGE 216
>gi|303249608|ref|ZP_07335814.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253218|ref|ZP_07535093.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651541|gb|EFL81691.1| SUN protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306859306|gb|EFM91344.1| Ribosomal RNA small subunit methyltransferase B [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 432
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ AR A Q + Q+ G S +I + ++ DL + I
Sbjct: 2 KKQNARAVAAQIILQVLDQGKSLATLIP-------------EAQAKLEAKDLPLVQEITF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
GV ++ +I+ + ++ +L G+ +L+ VP + E V A
Sbjct: 49 GVCRTLPRLEAVIAQ--AVEKPLKGKTRLVHCLLLVGLYQLLYMR-VPEFAAVDEVVNAA 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ IN VL + R+++
Sbjct: 106 RSLKLDNFKALINGVLRRFLREKD 129
>gi|297746508|emb|CBI16564.3| unnamed protein product [Vitis vinifera]
Length = 218
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 2/138 (1%)
Query: 35 CSTTEIISEYETYRFCADTELDVESV--YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
E++ E L Y + L + R ++ V+D+ L+I
Sbjct: 77 EEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAP 136
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
W IL + + I +++I+E V +A F G P+ IN L
Sbjct: 137 PNWKNEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRT 196
Query: 153 VSRKEEIKRSGCVSAITQ 170
+ E S TQ
Sbjct: 197 FVKDLEGTGITRASETTQ 214
>gi|221135270|ref|ZP_03561573.1| 16S rRNA m(5)C 967 methyltransferase [Glaciecola sp. HTCC2999]
Length = 442
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 17/151 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L+QI G S+ + +++ + Y D W + ++ G +
Sbjct: 10 RADAAWVLFQILEKGVSSKQALAQRLEH-------------YQGRDRAWLQEMVFGCLRT 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + IL ++ G+ ++ V +SE V A
Sbjct: 57 LPTLQFWLRGLLDK--PLKGRKKILEHLILIGLYQIAYSR-VSEHAAVSETVGAADLLKG 113
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
INA+L R+ ++ + S Q
Sbjct: 114 TTLKALINAILRTFIRE-DVANTAPESLAAQ 143
>gi|332998302|gb|EGK17903.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
VA-6]
Length = 420
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 16/138 (11%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A QA+ Q+ G S + I+ + D + + GV+
Sbjct: 1 MAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLS 47
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D LI+ + + + + ++ G+ +L+ +P ++E V A
Sbjct: 48 QLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQ 104
Query: 142 EPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 105 LKGLINGVLRQFQRRQEE 122
>gi|332754010|gb|EGJ84383.1| ribosomal RNA small subunit methyltransferase B [Shigella flexneri
2747-71]
Length = 420
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 16/138 (11%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A QA+ Q+ G S + I+ + D + + GV+
Sbjct: 1 MAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLS 47
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+D LI+ + + + + ++ G+ +L+ +P ++E V A
Sbjct: 48 QLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQ 104
Query: 142 EPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 105 LKGLINGVLRQFQRRQEE 122
>gi|33860983|ref|NP_892544.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639715|emb|CAE18885.1| Sun protein (Fmu protein) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 437
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y A ++ + +D+ + + G + ++ +DL I + + L
Sbjct: 23 YSDHALEKVLKNYEFNSLDIAFITELSFGCIRYRKFLDLWIDHTSKLSHT--KQPPKLRW 80
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+L G+ +L++ +P IS V +A +NA+L R E +
Sbjct: 81 LLHIGLYQLLKMDKIPFSAAISSTVEVAKKTDLKGLAGTVNAILRNTVRHIEKE 134
>gi|325685886|gb|EGD27952.1| RNA methyltransferase Sun [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 438
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ I S Y + + + +++G
Sbjct: 2 KTNARTVALDTLMKV-INQGS----------YSNISLNHALKAAKLPGEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 AYGRPKSSGYRLVNGILHSLLRRGEV 132
>gi|323342155|ref|ZP_08082388.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464580|gb|EFY09773.1| rRNA SAM-dependent methyltransferase RmsB [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 404
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
E D + ++ + +D + +L + +++ G +
Sbjct: 25 KELDLPAQDQAFVSAFVYATLQNSLFLDYQYEDLVD-----KKLPKEVRLVIKMGCAQYF 79
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ +P ++SE V + +NAVL KV + E + SG
Sbjct: 80 KMDKIPDYALVSETVDLCKAIGKHRYSGVVNAVLKKVIERNEREISGS 127
>gi|271964331|ref|YP_003338527.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
roseum DSM 43021]
gi|270507506|gb|ACZ85784.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Streptosporangium
roseum DSM 43021]
Length = 515
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 14/139 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR AA L +D ++ R D + +G
Sbjct: 53 RDEARNAAYDLLRAVDERDAYANLLMPALLRER-----------RLSGRDAGLATELAYG 101
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ D +I++C LD L +R GV +L++ VP + V +
Sbjct: 102 TLRGLGTYDEVIAACSDRAP--EDLDPPLLDAIRLGVHQLLKTR-VPPHAAVGTTVDLVR 158
Query: 136 DFFYGDEPKFINAVLDKVS 154
K+ NAVL KV+
Sbjct: 159 LRVGTGASKYANAVLRKVA 177
>gi|114571463|ref|YP_758143.1| Fmu (Sun) domain-containing protein [Maricaulis maris MCS10]
gi|114341925|gb|ABI67205.1| Fmu (Sun) domain protein [Maricaulis maris MCS10]
Length = 433
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 4/113 (3%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
A + D + R I R +++ L+ ++L
Sbjct: 26 EAALEHTPEFAAMSDRDRAFARAITATTFRRLGQTRTVLNGLLSR--PLHETSEGAQALL 83
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIK 160
G +L+ P ++S V +A INAVL +V R+ +
Sbjct: 84 ITGATQLLWMDGAP-HAVVSSTVELADARSDARKLKGLINAVLRRVDREGRER 135
>gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
Length = 437
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + +I E + D + + GVM
Sbjct: 8 RSIAAKAITQVLEQGQSLSSVIPELQQ-------------RVSDKDKALLQELCFGVMRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +S + + I ++ G+ +L +P ++E V A +
Sbjct: 55 LPQLEWFMSQLMAK--PLKGKQRIFHYLIMVGLYQLTYTR-IPAHAALAETVNGAINLKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R+++
Sbjct: 112 PQLKGLINGVLRQFQRQQQE 131
>gi|89895438|ref|YP_518925.1| hypothetical protein DSY2692 [Desulfitobacterium hafniense Y51]
gi|89334886|dbj|BAE84481.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 453
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R AVQ L +I+ ++ + + + + + ++++G +
Sbjct: 6 SRALAVQILQRIEEEKAYANLVM------------QKSLHDLSDPRERQLTTLLVNGTLK 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D + + S+L + ILR L+++ +P V I+E V +
Sbjct: 54 HRLTLDYALRRH--LRKPLSQLPREVRWILRISALQVLYLSRIPAAVAINEGVELTKK-Q 110
Query: 139 YGDEPKFINAVLDKVS 154
G +N+VL +V
Sbjct: 111 QGKYTSLVNSVLRRVL 126
>gi|33152966|ref|NP_874319.1| Fmu protein [Haemophilus ducreyi 35000HP]
gi|46396801|sp|Q7VKC4|RSMB_HAEDU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|33149191|gb|AAP96708.1| SUN protein [Haemophilus ducreyi 35000HP]
Length = 435
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 16/148 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ H++ +R A Q + Q+ G S + +I + D+ +
Sbjct: 1 MKHKKTSSRAIAAQIMLQVLDHGKSLSTLIP-------------AAQQQLDAKDIPLVQE 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I G+ ++ +I +T+ ++ +L G+ +L+ +PV + E V
Sbjct: 48 ITFGICRVLPRLEAIIQQLVTK--PLKGKSRLVHCLLLVGLYQLLYMR-IPVHAAVDEVV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
N VL + R+++
Sbjct: 105 NATKLVKLDSFRALTNGVLRRFLREQQT 132
>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
Length = 431
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGL-------------HNSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPHHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|152966927|ref|YP_001362711.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
gi|151361444|gb|ABS04447.1| Fmu (Sun) domain protein [Kineococcus radiotolerans SRS30216]
Length = 486
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A + L + ++ R D + + +GV+
Sbjct: 28 ASRKVAYEVLRAVSADDAYANLVLPRMLRDR-----------RLNGRDAAFATELAYGVL 76
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ D L+++ + + LD + +LR G+ +L+ VP ++ V +A +
Sbjct: 77 RGRGTYDALLATLVDR--PLAELDAGVLDVLRMGLHQLLAMR-VPDHAAVATSVALARNV 133
Query: 138 FYGDEPKFINAVLDKVS-RKEEI 159
G INAVL + R +
Sbjct: 134 VGGGPAGLINAVLRSAAGRDLDT 156
>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
Length = 431
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A + Q+ G S ++ + V+ D + +
Sbjct: 1 MKSKYNLRSIAAAVIAQVLDHGQSLSQSLP-------------AVQRDIAEKDRALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ +D I + + + +L +L G+ +L+ +P ++E V
Sbjct: 48 CFGVLRVLPQLDWCIGQLMAK--PLTGKQRVLHYLLMVGLYQLLYTR-IPPHATLAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GATALKRPQLKGLINGVLRQFQRQQEE 131
>gi|330861820|emb|CBX71992.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica W22703]
Length = 292
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGLQ-------------KSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|322831104|ref|YP_004211131.1| sun protein [Rahnella sp. Y9602]
gi|321166305|gb|ADW72004.1| sun protein [Rahnella sp. Y9602]
Length = 429
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAQAISQVLDKGLSLSTVLPGLQ-------------KNVSEKDRGLLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + L +L G+ +LI +P +++E V A
Sbjct: 55 LPQLEWCLQQLMAK--PLTGKQRTLHYLLMVGLYQLIHTR-IPAHAVLAETVDGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 429
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGLQ-------------KSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|262037941|ref|ZP_06011361.1| transcription antitermination factor NusB [Leptotrichia
goodfellowii F0264]
gi|261748019|gb|EEY35438.1| transcription antitermination factor NusB [Leptotrichia
goodfellowii F0264]
Length = 136
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R R + L++ ++I + I+E + +++ + +
Sbjct: 3 RREIREEIFKLLFEKELIDNDIDKRINEVIE----------ENKIKKEEQIDFLKSYVTE 52
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
++++++ + I S L E W++ RL + ++L+ E+ ++ E+ I+E + IA
Sbjct: 53 IVEKEEILVEEIKSIL-EGWTYERLGTLEKALLKIAFYEITI-KNIGYEIAINEVLEIAK 110
Query: 136 DFFYGDEPKFINAVLDKVSRKEE 158
+ Y D +F+N +L ++ +K
Sbjct: 111 KYSYDDTKEFLNGILAQLVKKNN 133
>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|224493291|sp|A1JRZ3|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 429
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGLQ-------------KSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|238758791|ref|ZP_04619965.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
gi|238703088|gb|EEP95631.1| Ribosomal RNA small subunit methyltransferase B [Yersinia aldovae
ATCC 35236]
Length = 429
Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPELQ-------------KNISDKDRALLQELCFGALRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + I ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAR--PLTGKQRIFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|213858030|ref|ZP_03385001.1| transcription antitermination protein NusB [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 59
Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
++LR + EL + VP +V I+E + +A F D KF+N VLDK + +
Sbjct: 1 EKAVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNK 58
>gi|116514363|ref|YP_813269.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093678|gb|ABJ58831.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 438
Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ + ++I++ +Y + + + +++G
Sbjct: 2 KTNARTVAL----------ATLMKVINQ-GSYSNISLNHALKAAKLPDEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 VYGRPKSSGYRLVNGILRSLLRRGEV 132
>gi|87125560|ref|ZP_01081405.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9917]
gi|86166860|gb|EAQ68122.1| Fmu, rRNA SAM-dependent methyltransferase [Synechococcus sp.
RS9917]
Length = 454
Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + D + +G + R+ +D + + + L
Sbjct: 33 AYADVALERALRGAGLSGADRGLATELAYGAIRRRLWLDAWLDRL--GRVPARKQPPRLR 90
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+L G+ +L +P ++ V +A +N +L R +
Sbjct: 91 WLLHVGLYQLFWMERIPAAAAVNTTVELAKHHRLARLAPVVNGLLRAALRARQA 144
>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
Length = 429
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSTVLPGL-------------NKSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|90415406|ref|ZP_01223340.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
HTCC2207]
gi|90332729|gb|EAS47899.1| hypothetical protein GB2207_08821 [marine gamma proteobacterium
HTCC2207]
Length = 439
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 3/126 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
E+I++ + + + S + D+ F+ + G + I+LL+ + +
Sbjct: 7 VAEVIAQVLRGKSLSALLPEYASKVVEKDVGLFKQLCFGTLRWYPAIELLLQELM--QKP 64
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ + +L G+ +L+ I+E V +NAVL R+
Sbjct: 65 MREKEFEIQGLLACGLYQLMHTRIAD-HAAINETVTAVTKLKRPWAKGLVNAVLRNFLRQ 123
Query: 157 EEIKRS 162
+
Sbjct: 124 RTELET 129
>gi|325126062|gb|ADY85392.1| rRNA methylase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 438
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ + ++I++ +Y + + + +++G
Sbjct: 2 KTNARTVAL----------ATLMKVINQ-GSYSNISLNHALKAAKLPDEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 VYGRPKSSGYRLVNGILRSLLRRGEV 132
>gi|213025104|ref|ZP_03339551.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 153
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ + G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|260914692|ref|ZP_05921158.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
gi|260631291|gb|EEX49476.1| RNA methyltransferase Sun [Pasteurella dagmatis ATCC 43325]
Length = 443
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 21/156 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ +KK+ LS R A Q + Q+ G S + +I +V++
Sbjct: 5 KTSKKNTALS-----TRAIAAQVILQVLDQGKSLSALIP-------------EVQNQVKS 46
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
DL + I G+ ++ +I + + + L + +P
Sbjct: 47 QDLSLLQEICFGICRVLPRLEHIIKQLVDKPLKGKTRIVHCLL---LVGLYQLLYTRIPA 103
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ E V IN VL + R+++
Sbjct: 104 HAAVDEVVNATTSLKSDSFRGLINGVLRRFLREQDT 139
>gi|170782379|ref|YP_001710712.1| putative Sun-family protein [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156948|emb|CAQ02117.1| conserved hypothetical Sun-family protein [Clavibacter
michiganensis subsp. sepedonicus]
Length = 488
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A Y+ + E + Y + D + +G
Sbjct: 33 SPARRVA----YE-------VVSAVRESDAYANLLLPVRIRRAALSAQDAALATELTYGT 81
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ + D +I L + +D + +LR V +L+ V ++E V +A
Sbjct: 82 LRMSGYYDRVIE--LAAGRPVTAIDAPILDVLRLSVHQLLSMR-VATHAAVNEGVDMARA 138
Query: 137 FFYGDEPKFINAVLDKVSR 155
F+N VL ++R
Sbjct: 139 VGSRSATGFVNGVLRTITR 157
>gi|307132808|ref|YP_003884824.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A AL Q+ G S + ++ + D + I
Sbjct: 1 MKSKYNLRSIAATALVQVVEQGQSLSHLLPALQR-------------DISEKDRGLLQEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ +D + + + + +L +L G+ +LI +P ++E V
Sbjct: 48 CFGVLRVLPQLDWHLRQLMAK--PLTGKQKVLHYLLMVGLYQLIHTR-IPPHAALAETVN 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R+++
Sbjct: 105 GAVALKRPQLKGLINGVLRQFQRQQDE 131
>gi|328471169|gb|EGF42071.1| 16S rRNA methyltransferase B [Vibrio parahaemolyticus 10329]
Length = 427
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|304373104|ref|YP_003856313.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
gi|304309295|gb|ADM21775.1| Transcription termination factor [Mycoplasma hyorhinis HUB-1]
gi|330723272|gb|AEC45642.1| Transcription termination factor [Mycoplasma hyorhinis MCLD]
Length = 152
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT +NKK +R I R+ + LY ++ ++ Y +
Sbjct: 1 MTQTENKKY--PFSKRRIHRMEIISLLYSYELFDNKINT-NEIFKNYDLTKEQ------- 50
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
I+ + + + LI + L WS++R+ ++ +IL G E
Sbjct: 51 ---------IKILEAIEKKYEIFQKLIINFLGSNWSWNRILPLVRAILLLGSFE---LLV 98
Query: 121 VPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+V+I+E V + D+ E KF+NAVLDK+++ E + TQ
Sbjct: 99 NDNKVVINEMVQMIKDYTLESDKEYKFVNAVLDKINQFYEQENLKVYKKTTQ 150
>gi|123967545|ref|YP_001008403.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. AS9601]
gi|123197655|gb|ABM69296.1| Antitermination protein NusB [Prochlorococcus marinus str. AS9601]
Length = 208
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
S T+I + T D + S E I +++ + ID I +
Sbjct: 85 KKSLTKIENVMNTLSVTLDFPKLIISSGQIDIREDVNQRICNIINNLKSIDSDIDQVMDG 144
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR +++ + PV V E V +A+ + KFIN VL ++
Sbjct: 145 -WRLKRLPRIDRDILRLAYVDINFL-NTPVAVACDEAVNLANKYSDLKGRKFINGVLRRL 202
Query: 154 S 154
Sbjct: 203 Q 203
>gi|307822766|ref|ZP_07652997.1| sun protein [Methylobacter tundripaludum SV96]
gi|307736370|gb|EFO07216.1| sun protein [Methylobacter tundripaludum SV96]
Length = 435
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 19/142 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A + L ++ G S T + + S+ D + + + +GV +
Sbjct: 4 RLVAARVLSRVLQDGQSLTAAL------------DNAFPSIESSKDRAFIQALCYGVCRQ 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D ++S L + D + S+ G+ +L V +SE V A
Sbjct: 52 YHRLDFILSQLLDKPLK----DTDVKSLALVGLYQLKFMR-VKPHAAVSETVLAARK--K 104
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
INAVL R++E
Sbjct: 105 PWAKSLINAVLRTYLREQEGLE 126
>gi|269967001|ref|ZP_06181071.1| sun protein [Vibrio alginolyticus 40B]
gi|269828395|gb|EEZ82659.1| sun protein [Vibrio alginolyticus 40B]
Length = 427
Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|310659156|ref|YP_003936877.1| rsmb [Clostridium sticklandii DSM 519]
gi|308825934|emb|CBH21972.1| RsmB [Clostridium sticklandii]
Length = 444
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 18/166 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ +K + +S+ AR A +Y + + Y + + ++
Sbjct: 1 MSNSIHKGAI-MSNN---ARKIAYDIIY-----------DVKYNKAYSNISINKAFNKNT 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + + +++G + R ++D I L + S +L ++L G +L S
Sbjct: 46 IDNREKGFVTELVYGALSRLIYLDYQIEQFLDMRAS--KLSKQAKTVLEMGFYQLEFMDS 103
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
V + E V + INAV+ K ++ + + + +S
Sbjct: 104 VSDFASVDESVKLIKK-VDNRSAGIINAVMRKRVKEGKAEYTDKIS 148
>gi|72383594|ref|YP_292949.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
str. NATL2A]
gi|72003444|gb|AAZ59246.1| Fmu, rRNA SAM-dependent methyltransferase [Prochlorococcus marinus
str. NATL2A]
Length = 438
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA + Q G + + +D + +G +
Sbjct: 6 ARKAAWDVI-QAVGGGAFADVALERIFNLY-----------SFKSIDKGLITELSYGAIR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
++ ++D I + +L +L G+ ++++ +P I+ V +A +
Sbjct: 54 QRYYLDCWIDYLGKV--PAKKQPPLLRWLLHLGLYQVLKMKRIPPAAAINTTVELAKTYH 111
Query: 139 YGDEPKFINAVLDKVSRKEE 158
+N +L R +E
Sbjct: 112 LKKLAPVVNGILRSALRSKE 131
>gi|308449899|ref|XP_003088114.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
gi|308249515|gb|EFO93467.1| hypothetical protein CRE_16572 [Caenorhabditis remanei]
Length = 435
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 27/157 (17%)
Query: 1 MT-IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
M+ IQ + K+L L R V+ L + G S +++++
Sbjct: 1 MSQIQSSAKNLNL-------RAQVVKTLLAVQ-NGQSLASVLNQHINI------------ 40
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + + G + + + + LT+ + L S L G+ +++ C
Sbjct: 41 -ISERDRGLYHELTLGCLRQWYSLKAITLPLLTKPLD----NEALESCLYLGLYQIL-CT 94
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P ISE V A + +NA+L +VSR+
Sbjct: 95 RIPAHAAISETVNAAKQLGFEPMSGLVNAILRRVSRE 131
>gi|270264342|ref|ZP_06192608.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
gi|270041478|gb|EFA14576.1| hypothetical protein SOD_h00090 [Serratia odorifera 4Rx13]
Length = 429
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSHAAKAIGQVLDQGQSLSTVLPSLQ-------------KTISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + L +L G+ +L+ +P +++E V A
Sbjct: 55 LPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQLLYTR-IPAHAVLAETVEGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|28899818|ref|NP_799423.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|260362016|ref|ZP_05775021.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
gi|260876497|ref|ZP_05888852.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|260897446|ref|ZP_05905942.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|46396865|sp|Q87KD3|RSMB_VIBPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|28808070|dbj|BAC61307.1| Sun protein [Vibrio parahaemolyticus RIMD 2210633]
gi|308087890|gb|EFO37585.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus Peru-466]
gi|308090396|gb|EFO40091.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AN-5034]
gi|308114191|gb|EFO51731.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus K5030]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|331703119|ref|YP_004399806.1| transcription termination factor NusB [Mycoplasma mycoides subsp.
capri LC str. 95010]
gi|328801674|emb|CBW53827.1| Transcription termination factor NusB [Mycoplasma mycoides subsp.
capri LC str. 95010]
Length = 132
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +Q Y+ ++ + I + + D+ + I +
Sbjct: 8 SKKRKLLIQTFYKYQLLNSNIDYIHQDILD----------DVQNINNKDVLF---EIEQI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ + I++ ++ W + R+ ++ +IL G E++ P V I+E V +
Sbjct: 55 AKKQTDLINHINTNVSSSWKWDRIPAVIRAILIVGTYEILYTD-TPKPVTINEMVKYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKLVK 132
>gi|253690152|ref|YP_003019342.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259495486|sp|C6DFR7|RSMB_PECCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|251756730|gb|ACT14806.1| sun protein [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 429
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + Q+ G S + ++ ++ D + + GV+
Sbjct: 8 RSIAAKVVGQVLDQGQSLSALLPVHQR-------------EVSEKDRALLQELCFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + L ++ G+ +L +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-IPPHAALAETVEGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|226503425|ref|NP_001146234.1| hypothetical protein LOC100279806 [Zea mays]
gi|219886309|gb|ACL53529.1| unknown [Zea mays]
Length = 174
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S + S E A +L + L + E + G ID +I
Sbjct: 42 ASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDKHVVIIDKIIPQ----A 97
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
W + IL + + + P +V+I+E V +A F G P+ IN L
Sbjct: 98 WKDEPVARILELCILHIAMAEMASKGTPHKVVINEAVDLAKRFCDGGAPRVINGCLRTFV 157
Query: 155 RK 156
+
Sbjct: 158 KD 159
>gi|317490607|ref|ZP_07949080.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
gi|325831536|ref|ZP_08164790.1| putative ribosomal RNA small subunit methyltransferase B
[Eggerthella sp. HGA1]
gi|316910309|gb|EFV31945.1| NusB family protein [Eggerthella sp. 1_3_56FAA]
gi|325486790|gb|EGC89238.1| putative ribosomal RNA small subunit methyltransferase B
[Eggerthella sp. HGA1]
Length = 473
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 16/161 (9%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
K + ARLAA+ + + ++I S
Sbjct: 16 PKNPQKKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDR-----------SDLSSE 64
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + GV+ +D +I L + LR E++ P
Sbjct: 65 DRAFATKLALGVVSSTGTLDEIIDRALNAPSDVKP---DVRDALRVSAYEIVFLGKTP-H 120
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ + V + F NAVL K+ + G
Sbjct: 121 AAVDQGVELVRSFAMS-ASGLANAVLRKIVLMRQAFPFGDP 160
>gi|224541737|ref|ZP_03682276.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
15897]
gi|224525341|gb|EEF94446.1| hypothetical protein CATMIT_00909 [Catenibacterium mitsuokai DSM
15897]
Length = 439
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 18/139 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L + ++ T + + +++G +
Sbjct: 29 RDTALDILIDYEKNESYLNITLNHTLT------------QDFSPSERGLITTLVYGTIQN 76
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +++ + + + + +L + + P I++E V I +
Sbjct: 77 RLYLEYQLEPHIHTRLKV-----VEKMLLLMSLYQHFYLD-TPDYAIVNEAVEIIKERRN 130
Query: 140 GDEPKFINAVLDKVSRKEE 158
INA+L ++
Sbjct: 131 KRAGGMINAILHSCFKETR 149
>gi|75762655|ref|ZP_00742497.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74489854|gb|EAO53228.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 368
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+LR + ++I VP I E V IA + +N VL + R+
Sbjct: 1 MLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 50
>gi|91226301|ref|ZP_01261141.1| Sun protein [Vibrio alginolyticus 12G01]
gi|91189312|gb|EAS75591.1| Sun protein [Vibrio alginolyticus 12G01]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|329574370|gb|EGG55942.1| transcription antitermination protein NusB domain protein
[Enterococcus faecalis TX1467]
Length = 59
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
ILR + E++ VP V ++E V ++ + KF+N VL + ++ + +
Sbjct: 2 DIVILRLAIFEMLYVSDVPNIVALNEAVELSKKYSDDRSRKFVNGVLSNLMKEIDSE 58
>gi|225847985|ref|YP_002728148.1| transcription antitermination factor NusB [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644070|gb|ACN99120.1| transcription antitermination factor NusB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 159
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 19/157 (12%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + + AR ++ Y D G +I+ EY +
Sbjct: 1 MKQSIKNIQRQARELLLKVFYTFDQKGEPLEDILKEYTNL-----------KEISPEVIN 49
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL------ELIECHSV 121
+ + II ++K +D +I S L EKW F RL I ++L+ + E +
Sbjct: 50 YAKEIISFFNEKKDKVDEMIKSHL-EKWRFERLGYIEKALLKIAITDFLKLKEKGREENF 108
Query: 122 PVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
++ II + + + + KF+N +L +V R+
Sbjct: 109 MIKRIILDTLDLVECYTGSKKSVKFVNGILGRVVREL 145
>gi|50122921|ref|YP_052088.1| 16S rRNA methyltransferase B [Pectobacterium atrosepticum SCRI1043]
gi|81643776|sp|Q6D000|RSMB_ERWCT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|49613447|emb|CAG76898.1| Sun protein [Pectobacterium atrosepticum SCRI1043]
Length = 429
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + Q+ G S + ++ ++ D + + GV+
Sbjct: 8 RSIAAKVVGQVLDQGQSLSALLPIHQR-------------DVSDKDRALLQELCFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + L ++ G+ +L +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-IPPHAALAETVEGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|254229997|ref|ZP_04923398.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262392829|ref|YP_003284683.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|151937499|gb|EDN56356.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
gi|262336423|gb|ACY50218.1| ribosomal RNA small subunit methyltransferase B [Vibrio sp. Ex25]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
Length = 433
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLT 92
I + + D + L + +I+GV++ K ++D +I
Sbjct: 2 NDLELICNSLVNIIYEDKKSNDEINYLAKKVQGLAYATKLIYGVLENKIYLDYMIGKLSK 61
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
++ + +IL G+ + + I+ + V + F+NA+L
Sbjct: 62 V--KIKKIHKNVLTILEMGLYNIHFL-ATKDYAIVDKLVELCKK-KNKRSANFVNAILRN 117
Query: 153 VSRKEE 158
R EE
Sbjct: 118 FIRNEE 123
>gi|156972728|ref|YP_001443635.1| cytosine-C5-methylase [Vibrio harveyi ATCC BAA-1116]
gi|156524322|gb|ABU69408.1| hypothetical protein VIBHAR_00393 [Vibrio harveyi ATCC BAA-1116]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQNVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|260901337|ref|ZP_05909732.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
gi|308109871|gb|EFO47411.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ4037]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|282853850|ref|ZP_06263187.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes J139]
gi|282583303|gb|EFB88683.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes J139]
gi|314923543|gb|EFS87374.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL001PA1]
gi|314966589|gb|EFT10688.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL082PA2]
gi|314981514|gb|EFT25608.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL110PA3]
gi|315092178|gb|EFT64154.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL110PA4]
gi|315092889|gb|EFT64865.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL060PA1]
gi|315103589|gb|EFT75565.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL050PA2]
gi|327327412|gb|EGE69188.1| sun protein [Propionibacterium acnes HL103PA1]
Length = 458
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+L +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRLHQKRRKADPARRLAYSALLAVETQG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|269962646|ref|ZP_06176991.1| sun protein [Vibrio harveyi 1DA3]
gi|269832569|gb|EEZ86683.1| sun protein [Vibrio harveyi 1DA3]
Length = 427
Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQNVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|332702662|ref|ZP_08422750.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
gi|332552811|gb|EGJ49855.1| Fmu (Sun) domain protein [Desulfovibrio africanus str. Walvis Bay]
Length = 433
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 14/137 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA++A+ + + T R A D+ + +G +
Sbjct: 9 ARRAALEAVSKSLNTSTDVQAALDTQITARRLA-----------PRDIGLATELTYGYLR 57
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K +D L+ L + IL EL VP ++ V F
Sbjct: 58 LKSRLDALLDHFLRAPGKL---PARVRLILGLAAYELSYLDRVPAYASVNWAVDAVKADF 114
Query: 139 YGDEPKFINAVLDKVSR 155
K N VL V R
Sbjct: 115 GQGLSKMANGVLRSVER 131
>gi|327330430|gb|EGE72179.1| sun protein [Propionibacterium acnes HL097PA1]
Length = 458
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRLAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|314987947|gb|EFT32038.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL005PA2]
Length = 458
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRLAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|289425301|ref|ZP_06427078.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes SK187]
gi|289154279|gb|EFD02967.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes SK187]
Length = 458
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRLAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|295130755|ref|YP_003581418.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes SK137]
gi|291377004|gb|ADE00859.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes SK137]
Length = 458
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRLAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|50842676|ref|YP_055903.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
gi|289428602|ref|ZP_06430286.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes J165]
gi|50840278|gb|AAT82945.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes KPA171202]
gi|289158296|gb|EFD06515.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes J165]
gi|313764281|gb|EFS35645.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL013PA1]
gi|313772001|gb|EFS37967.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL074PA1]
gi|313802083|gb|EFS43317.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL110PA2]
gi|313807694|gb|EFS46181.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL087PA2]
gi|313810201|gb|EFS47922.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL083PA1]
gi|313812771|gb|EFS50485.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL025PA1]
gi|313816188|gb|EFS53902.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL059PA1]
gi|313818731|gb|EFS56445.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL046PA2]
gi|313820501|gb|EFS58215.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL036PA1]
gi|313822693|gb|EFS60407.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL036PA2]
gi|313825373|gb|EFS63087.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL063PA1]
gi|313827669|gb|EFS65383.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL063PA2]
gi|313830532|gb|EFS68246.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL007PA1]
gi|313833568|gb|EFS71282.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL056PA1]
gi|313838904|gb|EFS76618.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL086PA1]
gi|314915270|gb|EFS79101.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL005PA4]
gi|314918180|gb|EFS82011.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL050PA1]
gi|314920256|gb|EFS84087.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL050PA3]
gi|314925043|gb|EFS88874.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL036PA3]
gi|314931779|gb|EFS95610.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL067PA1]
gi|314955581|gb|EFS99982.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL027PA1]
gi|314958076|gb|EFT02179.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL002PA1]
gi|314960353|gb|EFT04455.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL002PA2]
gi|314962623|gb|EFT06723.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL082PA1]
gi|314967512|gb|EFT11611.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL037PA1]
gi|314973532|gb|EFT17628.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL053PA1]
gi|314976212|gb|EFT20307.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL045PA1]
gi|314978627|gb|EFT22721.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL072PA2]
gi|314983766|gb|EFT27858.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL005PA1]
gi|314989757|gb|EFT33848.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL005PA3]
gi|315077839|gb|EFT49890.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL053PA2]
gi|315080464|gb|EFT52440.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL078PA1]
gi|315084135|gb|EFT56111.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL027PA2]
gi|315085478|gb|EFT57454.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL002PA3]
gi|315088465|gb|EFT60441.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL072PA1]
gi|315096079|gb|EFT68055.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL038PA1]
gi|315098708|gb|EFT70684.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL059PA2]
gi|315101523|gb|EFT73499.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL046PA1]
gi|315105750|gb|EFT77726.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL030PA1]
gi|315108670|gb|EFT80646.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL030PA2]
gi|327326359|gb|EGE68149.1| sun protein [Propionibacterium acnes HL096PA2]
gi|327331766|gb|EGE73503.1| sun protein [Propionibacterium acnes HL096PA3]
gi|327443543|gb|EGE90197.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL013PA2]
gi|327445747|gb|EGE92401.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL043PA2]
gi|327448270|gb|EGE94924.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL043PA1]
gi|327450608|gb|EGE97262.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL087PA3]
gi|327454053|gb|EGF00708.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL083PA2]
gi|328753311|gb|EGF66927.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL025PA2]
gi|328754026|gb|EGF67642.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL087PA1]
gi|328754754|gb|EGF68370.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL020PA1]
gi|328760679|gb|EGF74245.1| sun protein [Propionibacterium acnes HL099PA1]
gi|332675599|gb|AEE72415.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium acnes 266]
Length = 458
Score = 60.5 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRLAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|153834294|ref|ZP_01986961.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
gi|148869302|gb|EDL68316.1| ribosomal RNA small subunit methyltransferase B [Vibrio harveyi
HY01]
Length = 427
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQNVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|161507728|ref|YP_001577689.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260101420|ref|ZP_05751657.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
gi|160348717|gb|ABX27391.1| rRNA methylase [Lactobacillus helveticus DPC 4571]
gi|260084760|gb|EEW68880.1| RNA methyltransferase Sun [Lactobacillus helveticus DSM 20075]
Length = 454
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
KLS + AR +++ L ++ G + ++ + S D
Sbjct: 12 KLSTNKS-ARAISLETLIKVLQNGSYSNISLNNSLKH-----------SDLSIADQNLAT 59
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++G + + ++ + T + L +L + ++I VP ++ E
Sbjct: 60 RIVYGTIQYRLFLEYQL----TGLLKTKITEKYLKPLLLMSLYQIIFLDKVPNRAVLDEA 115
Query: 131 VCIAHDFFYGDEPKF--INAVLDKVSRK 156
+A F + +N +L R+
Sbjct: 116 NKLAKQFGKHHSSGYRVVNGILRAFIRR 143
>gi|22127891|ref|NP_671314.1| 16S rRNA methyltransferase B [Yersinia pestis KIM 10]
gi|51597957|ref|YP_072148.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 32953]
gi|108809224|ref|YP_653140.1| 16S rRNA methyltransferase B [Yersinia pestis Antiqua]
gi|108813989|ref|YP_649756.1| 16S rRNA methyltransferase B [Yersinia pestis Nepal516]
gi|145597481|ref|YP_001161556.1| 16S rRNA methyltransferase B [Yersinia pestis Pestoides F]
gi|150260712|ref|ZP_01917440.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|153947745|ref|YP_001402832.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis IP 31758]
gi|161511468|ref|NP_991637.2| 16S rRNA methyltransferase B [Yersinia pestis biovar Microtus str.
91001]
gi|165927896|ref|ZP_02223728.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|166010534|ref|ZP_02231432.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|167468244|ref|ZP_02332948.1| 16S rRNA methyltransferase B [Yersinia pestis FV-1]
gi|170022575|ref|YP_001719080.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis YPIII]
gi|186897153|ref|YP_001874265.1| 16S rRNA methyltransferase B [Yersinia pseudotuberculosis PB1/+]
gi|218927446|ref|YP_002345321.1| 16S rRNA methyltransferase B [Yersinia pestis CO92]
gi|229836278|ref|ZP_04456445.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|229840098|ref|ZP_04460257.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842180|ref|ZP_04462335.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904520|ref|ZP_04519631.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|46396984|sp|Q8ZJ81|RSMB_YERPE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|81638254|sp|Q664V2|RSMB_YERPS RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|122979388|sp|Q1C2X7|RSMB_YERPA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|122979880|sp|Q1CCX4|RSMB_YERPN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493292|sp|A7FNK4|RSMB_YERP3 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493293|sp|B2K506|RSMB_YERPB RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493294|sp|A4TH21|RSMB_YERPP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|224493295|sp|B1JJH6|RSMB_YERPY RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|21961028|gb|AAM87565.1|AE014004_3 hypothetical protein y4021 [Yersinia pestis KIM 10]
gi|51591239|emb|CAH22905.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108777637|gb|ABG20156.1| hypothetical protein YPN_3829 [Yersinia pestis Nepal516]
gi|108781137|gb|ABG15195.1| hypothetical protein YPA_3233 [Yersinia pestis Antiqua]
gi|115346057|emb|CAL18923.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209177|gb|ABP38584.1| hypothetical protein YPDSF_0162 [Yersinia pestis Pestoides F]
gi|149290120|gb|EDM40197.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis CA88-4125]
gi|152959240|gb|ABS46701.1| ribosomal RNA small subunit methyltransferase B [Yersinia
pseudotuberculosis IP 31758]
gi|165920172|gb|EDR37473.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165990624|gb|EDR42925.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. E1979001]
gi|169749109|gb|ACA66627.1| sun protein [Yersinia pseudotuberculosis YPIII]
gi|186700179|gb|ACC90808.1| sun protein [Yersinia pseudotuberculosis PB1/+]
gi|229678638|gb|EEO74743.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Nepal516]
gi|229690490|gb|EEO82544.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696464|gb|EEO86511.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706346|gb|EEO92353.1| 16S rRNA m5C967 methyltransferase [Yersinia pestis Pestoides A]
gi|320013373|gb|ADV96944.1| 16S rRNA methyltransferase B [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 429
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSAVLPELQ-------------KNISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATVLKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|261823202|ref|YP_003261308.1| 16S rRNA methyltransferase B [Pectobacterium wasabiae WPP163]
gi|261607215|gb|ACX89701.1| sun protein [Pectobacterium wasabiae WPP163]
Length = 429
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + Q+ G S + ++ ++ D + + GV+
Sbjct: 8 RSIAAKVVGQVLDQGQSLSALLPVHQR-------------DVSDKDRALLQELCFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + L ++ G+ +L +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-IPPHAALAETVEGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|83309246|ref|YP_419510.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
AMB-1]
gi|82944087|dbj|BAE48951.1| tRNA and rRNA cytosine-C5-methylase [Magnetospirillum magneticum
AMB-1]
Length = 431
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 16/158 (10%)
Query: 12 LSHRRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ + R AV L + G +++ + S D + R
Sbjct: 1 MKRASSTSPRAIAVDLLSMVLDKGRLLDDVL------------DDSRLSRLEDRDRGFVR 48
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++ + R ID LI CL + LR G+ +L+ P IS
Sbjct: 49 MLLGTTLRRLGQIDTLIEHCLDK--PMRAGAAGAEHALRLGICQLLFLDVAP-HAAISTT 105
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
V + K +NAVL ++ R+ + + +
Sbjct: 106 VDLVKGSKLAGFAKLLNAVLRRLDREGRDLAAAQDAGL 143
>gi|302823170|ref|XP_002993239.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
gi|300138909|gb|EFJ05660.1| hypothetical protein SELMODRAFT_136794 [Selaginella moellendorffii]
Length = 476
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVE------SVYLHVDLEWFRVIIHGVMDRK 80
L +I++ G +++++ R + E +L+ + G++ K
Sbjct: 17 LMRIEMGGA-FSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 81 QHIDLLISSCLTEKWS-FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+++D +IS+ + + F R++ IL +LR G EL++ V ++E V +A+
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGSYELLKLEVPAYAV-VNEAVKLANAASR 134
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
K NA+L V+ +E
Sbjct: 135 AGAGKLANALLRAVASHKEKN 155
>gi|145594413|ref|YP_001158710.1| Fmu (Sun) domain-containing protein [Salinispora tropica CNB-440]
gi|145303750|gb|ABP54332.1| Fmu (Sun) domain protein [Salinispora tropica CNB-440]
Length = 509
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 55/151 (36%), Gaps = 15/151 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA QA+ + + Y + ++ + D + + +G + R
Sbjct: 64 RHAAYQAV-----------AAVHRDDAYANLVLPAILRDAGLVGRDAAFATELTYGTLRR 112
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +++ +R+D + LR G +L+ VP +S V +
Sbjct: 113 LGTLDAILTD--AAGRDVARIDPPVRDALRLGAYQLLHTR-VPAHAAVSATVDLVRS-VG 168
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NAVL +V+ ++ ++ +
Sbjct: 169 PGATGFANAVLREVASRDVDAWVARLAPPLE 199
>gi|224493303|sp|A9R925|RSMB_YERPG RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
Length = 429
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 8 RSIAAKAISQVLDQGQSLSAVLPELQ-------------KNISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATVLKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQLKGLINGVLRQFQRQQ 129
>gi|45434953|gb|AAS60514.1| tRNA and rRNA cytosine-C5-methylases [Yersinia pestis biovar
Microtus str. 91001]
Length = 435
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 14 RSIAAKAISQVLDQGQSLSAVLPELQ-------------KNISDKDRALLQELCFGTLRV 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 61 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATVLKR 117
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 118 PQLKGLINGVLRQFQRQQ 135
>gi|302824271|ref|XP_002993780.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
gi|300138376|gb|EFJ05146.1| hypothetical protein SELMODRAFT_137586 [Selaginella moellendorffii]
Length = 476
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 27 LYQIDIIGCSTTEIISEYETYRFCADTELDVE------SVYLHVDLEWFRVIIHGVMDRK 80
L +I++ G +++++ R + E +L+ + G++ K
Sbjct: 17 LMRIEMGGA-FSDVLNGDGEDRLDKEMEYVKRTLGFSIPSLRPENLKLVTEEVAGIVRWK 75
Query: 81 QHIDLLISSCLTEKWS-FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+++D +IS+ + + F R++ IL +LR G EL++ V ++E V +A+
Sbjct: 76 KYLDYVISNVYDKDQNEFERMEPILKQVLRLGAYELLKLEVPAYAV-VNEAVKLANAASR 134
Query: 140 GDEPKFINAVLDKVSRKEEIK 160
K NA+L V+ +E
Sbjct: 135 AGAGKLANALLRAVASHKEKN 155
>gi|124023762|ref|YP_001018069.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
gi|123964048|gb|ABM78804.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9303]
Length = 450
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A ++ D + +G + ++Q +D + + +L
Sbjct: 35 AYADVALERALRQNPMSGADRGLVMELAYGAIRQRQWLDAWLDRLGKV--PACKQPPVLR 92
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+L G+ +++ +P ++ V +A +N +L R +
Sbjct: 93 WLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 146
>gi|33862543|ref|NP_894103.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
gi|33640656|emb|CAE20445.1| Sun protein (Fmu protein) [Prochlorococcus marinus str. MIT 9313]
Length = 451
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A ++ D + +G + ++Q +D + + +L
Sbjct: 36 AYADVALERALRQNPMSGADRGLVMELAYGAIRQRQWLDAWLDRLGKV--PACKQPPVLR 93
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+L G+ +++ +P ++ V +A +N +L R +
Sbjct: 94 WLLHLGLYQILRMQRIPAAAAVNTSVELAKTGKLARLAPVVNGILRAALRARDA 147
>gi|165936548|ref|ZP_02225116.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166213307|ref|ZP_02239342.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167399475|ref|ZP_02304999.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419402|ref|ZP_02311155.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167425618|ref|ZP_02317371.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|270488262|ref|ZP_06205336.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294502314|ref|YP_003566376.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
gi|165915664|gb|EDR34273.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. IP275]
gi|166205605|gb|EDR50085.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166963396|gb|EDR59417.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051979|gb|EDR63387.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167055308|gb|EDR65102.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|262360394|gb|ACY57115.1| hypothetical protein YPD4_0206 [Yersinia pestis D106004]
gi|262364344|gb|ACY60901.1| hypothetical protein YPD8_0211 [Yersinia pestis D182038]
gi|270336766|gb|EFA47543.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
KIM D27]
gi|294352773|gb|ADE63114.1| hypothetical protein YPZ3_0204 [Yersinia pestis Z176003]
Length = 431
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 10 RSIAAKAISQVLDQGQSLSAVLPELQ-------------KNISDKDRALLQELCFGTLRV 56
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 57 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATVLKR 113
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 114 PQLKGLINGVLRQFQRQQ 131
>gi|298529651|ref|ZP_07017054.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298511087|gb|EFI34990.1| Fmu (Sun) domain protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 417
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ +++ D + +G + K +D +++ L S + ++
Sbjct: 30 DRNLDPEMDLRDRSLATELAYGYLRYKGRLDFVLNCFLKSPAGLS---GKIRVLMGLAAY 86
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E+ +P +S V + F +NAVL K R
Sbjct: 87 EIFFLERIPDYAAVSRAVALTRKRFGSRMSSLVNAVLRKCCR 128
>gi|269124204|ref|YP_003306781.1| NusB antitermination factor [Streptobacillus moniliformis DSM
12112]
gi|268315530|gb|ACZ01904.1| NusB antitermination factor [Streptobacillus moniliformis DSM
12112]
Length = 133
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 13/142 (9%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R + L++ +++ E+ + E+ ++
Sbjct: 4 REVRNEIFKILFEHEVVNSDI-----------IARKDEVLETLKISNSKREFLENYLNNF 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
M + I + W+FSRL IL+ E++ V I+E V ++
Sbjct: 53 MLNESEIIEK-IKEKIKGWTFSRLATPEKVILKMAFFEILFEKVGHEIV-INEAVELSKV 110
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+ FIN +L + + +
Sbjct: 111 YGDEKTKTFINGILADLIKDID 132
>gi|162420599|ref|YP_001605204.1| 16S rRNA methyltransferase B [Yersinia pestis Angola]
gi|162353414|gb|ABX87362.1| ribosomal RNA small subunit methyltransferase B [Yersinia pestis
Angola]
Length = 435
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ E + D + + G +
Sbjct: 14 RSIAAKAISQVLDQGQSLSAVLPELQ-------------KNISDKDRALLQELCFGTLRV 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +LI +P ++E V A
Sbjct: 61 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLIYTR-IPPHAALAETVEGATVLKR 117
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 118 PQLKGLINGVLRQFQRQQ 135
>gi|162456172|ref|YP_001618539.1| Sun protein [Sorangium cellulosum 'So ce 56']
gi|161166754|emb|CAN98059.1| Sun protein [Sorangium cellulosum 'So ce 56']
Length = 496
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
D EL D+ +++GV+ + ++ I+ + D ++ + + G
Sbjct: 53 DAELRRAPALDPRDIGLATELVYGVLRAQAALEARIAEFAAKSR--WTADPLVRAHVLMG 110
Query: 112 VLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
L VP +SE V A F NAVL +++
Sbjct: 111 AYSLCFLDRVPSFAAVSEAVDGAQAAGGPRVGAFANAVLRRLA 153
>gi|227823840|ref|YP_002827813.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
gi|227342842|gb|ACP27060.1| Fmu (Sun) domain protein [Sinorhizobium fredii NGR234]
Length = 473
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R AA + L + S ++ + + D R I++ +
Sbjct: 38 KSRQAAAKILAAVIDRNTSLDGMLDQ--------EHGNPAYRELNDADRALVRAILNSAL 89
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
I I S + L +L +++ +P + V A
Sbjct: 90 RHLPRIRAAIDSL--LQTPLPEGARALEHVLTVAAAQILYLD-IPDHSAVDLAVEQAQSD 146
Query: 138 -FYGDEPKFINAVLDKVSRKEEI 159
+NAVL ++SR+++
Sbjct: 147 PRNRRFASLVNAVLRRLSREKQA 169
>gi|289209431|ref|YP_003461497.1| sun protein [Thioalkalivibrio sp. K90mix]
gi|288945062|gb|ADC72761.1| sun protein [Thioalkalivibrio sp. K90mix]
Length = 451
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 48/160 (30%), Gaps = 19/160 (11%)
Query: 7 KKDLKLSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
K+ ++ R R A++A
Sbjct: 4 KRAGRIVPSRVDSRSPRQRALEA-------------AEGVVLQGHSLTRAVEHATEGLNA 50
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D W + + + + + L++ + + D ++ +L G+ EL+ +
Sbjct: 51 RDAAWVQALAYTTLRWYPQLSALVNGF--LERPLRKKDAVIGVLLAQGLAELMHFSTRD- 107
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ E +A INAVL + R+++ +
Sbjct: 108 HAAVRETAELARAIHRPGAVGLINAVLRRAQREQDALEAA 147
>gi|111224598|ref|YP_715392.1| hypothetical protein FRAAL5224 [Frankia alni ACN14a]
gi|111152130|emb|CAJ63857.1| conserved hypothetical protein [Frankia alni ACN14a]
Length = 497
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 16/144 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A + L +D G ++ S D + + +G +
Sbjct: 22 RLLAWEVLRAVDERGSYANLLLPSLLA-----------GSGLPARDRGFVTELAYGALRA 70
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L+ + + +D L LR G +L+ VP ++ V +
Sbjct: 71 QGTLDGLLDTATSR--PVHDIDPPLRDALRLGAYQLL-RTRVPARAAVASTVDLVRATSG 127
Query: 140 GDEPKFINAVLDKVSRKEEIKRSG 163
+F NAVL +V+ I +G
Sbjct: 128 ERPVRFANAVLRRVA--TRIAETG 149
>gi|269302790|gb|ACZ32890.1| transcription antitermination factor NusB [Chlamydophila pneumoniae
LPCoLN]
Length = 160
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R +Q LY +D+ + ++ + + + V LE
Sbjct: 24 KMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILE---------- 73
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K LI + SF LD++ ++LR + E + ++I+E + + F
Sbjct: 74 --KSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKF 131
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSG 163
Y + FI+A+L+ + + +
Sbjct: 132 SYSEACPFIHAILNDIFTDSSLNENS 157
>gi|313837734|gb|EFS75448.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL037PA2]
gi|314927384|gb|EFS91215.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL044PA1]
gi|314972672|gb|EFT16769.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL037PA3]
gi|328907468|gb|EGG27234.1| tRNA/rRNA cytosine-C5-methylase [Propionibacterium sp. P08]
Length = 458
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
+ +R A R A AL ++ G Y A + +
Sbjct: 1 MNQCPHQKRRKADPARRLAYTALLAVETHG-----------AYANLALADQLRAAKMTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + +L + +LR +++ VP
Sbjct: 50 DAAFVTELVDGTSRGTGTWDRIIEVASRRNPT--KLQPGVRVMLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NAV ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAVSRRIS 136
>gi|104774278|ref|YP_619258.1| putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|103423359|emb|CAI98212.1| Putative RNA methylase [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
Length = 438
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 50/146 (34%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ L ++ I S Y + + + +++G
Sbjct: 2 KTNARTVALDTLMKV-INQGS----------YSNISLNHALKAAKLPGEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 VYGRPKSSGYRLVNGILHSLLRRGEV 132
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 14/144 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
+R+ A Q L + Y A + VD I +G +
Sbjct: 23 SRMVAWQILQSVAAG------------AYASVALEKALQRHPLPPVDRGLATEIAYGSIR 70
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D +S + + +L +L G+ +L+ VP I+ V +A
Sbjct: 71 RRLTLDTYLSHLGKVLAN--KQPPLLRWLLHVGLYQLLFVERVPSAAAINTTVELAKKSS 128
Query: 139 YGDEPKFINAVLDKVSRKEEIKRS 162
+N +L R ++ ++
Sbjct: 129 LATLAPVVNGILRTAHRFQQSGKA 152
>gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
Length = 449
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D F I +GV+ K ++D +I+ S ++D + LR GV +L
Sbjct: 33 EDKRDKNLFTEIYYGVIRNKLYLDYIINQFSKT--SLLKMDSEVLMGLRIGVYQLFFLDK 90
Query: 121 VPVEVIISEYVCIAHDF---FYGDEPKFINAVLDKVSRKEEIKR 161
VP I E V F N VL ++RK +
Sbjct: 91 VPARAAIYESVEAVKIILPASQKGAISFTNGVLRNINRKRNSIK 134
>gi|147837899|emb|CAN67145.1| hypothetical protein VITISV_042360 [Vitis vinifera]
Length = 324
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
I+ G + ++++D LI S + +F ++ +L ILR G E++ P V +
Sbjct: 114 VTDIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAV-VD 172
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A +NA+L K+
Sbjct: 173 ENVRLAKVALRPGAANMVNAILRKLV 198
>gi|170719272|ref|YP_001746960.1| sun protein [Pseudomonas putida W619]
gi|169757275|gb|ACA70591.1| sun protein [Pseudomonas putida W619]
Length = 436
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLIGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P I E V A +NAVL + R+ E +G
Sbjct: 88 R-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEALLAG 131
>gi|315038633|ref|YP_004032201.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|312276766|gb|ADQ59406.1| rRNA methylase [Lactobacillus amylovorus GRL 1112]
gi|327183838|gb|AEA32285.1| 16S rRNA methyltransferase B [Lactobacillus amylovorus GRL 1118]
Length = 442
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S + AR +++ L ++ + ++ + S D
Sbjct: 1 MSTSKS-ARAISLETLIKVLQDKSYSNISLNNSLNH-----------SDLSQADQNLATK 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I++G + + ++ + + L +L + +++ VP ++ E
Sbjct: 49 IVYGTIQYRLFLEYQL----KGLVRIKLTEKYLKPLLLMSIYQIVFLDKVPNRAVLDEAN 104
Query: 132 CIAHDFFYGDEPKF--INAVLDKVSRK 156
+A F + +N +L R+
Sbjct: 105 KLAKQFGKHHSSGYRVVNGILRSFIRR 131
>gi|261346903|ref|ZP_05974547.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
gi|282564970|gb|EFB70505.1| ribosomal RNA small subunit methyltransferase B [Providencia
rustigianii DSM 4541]
Length = 428
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 16/145 (11%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A A+ Q+ G S + ++ E + D + +
Sbjct: 1 MKNKYNLRSIAATAIGQVLDKGQSLSTVLPELQRNIN-------------EKDKALLQEM 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ IS + + + IL ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRYLPKLEWFISQLM--EKPLTGKQRILHYLIMVGIYQLLYTR-IPAHAALAETVD 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKE 157
A IN VL R++
Sbjct: 105 GAVALKRPQLKGLINGVLRSFLRQQ 129
>gi|209965632|ref|YP_002298547.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
centenum SW]
gi|209959098|gb|ACI99734.1| ribosomal RNA small subunit methyltransferase B [Rhodospirillum
centenum SW]
Length = 447
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + R++ V R +D L+ L + + + ILR G +L+
Sbjct: 56 ALEPRDRGFVRLLCATVFRRLGQLDALVQGALAKPGQPVKGPVQD--ILRLGAAQLLFL- 112
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P + V +A +NAVL ++SR+
Sbjct: 113 GTPAHAAVDTSVELAVARGQTPYKGLVNAVLRRLSRE 149
>gi|323466286|gb|ADX69973.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus helveticus
H10]
Length = 448
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 18/148 (12%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
KLS + AR +++ L ++ G + ++ + S D
Sbjct: 6 KLSTNKS-ARAISLETLIKVLQNGSYSNISLNNSLKH-----------SDLSIADQNLAT 53
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
I++G + + + + T + L +L + ++I VP ++ E
Sbjct: 54 RIVYGTIQYRLFFEYQL----TGLLKTKITEKYLKPLLLMSLYQIIFLDKVPNRAVLDEA 109
Query: 131 VCIAHDFFYGDEPKF--INAVLDKVSRK 156
+A F + +N +L R+
Sbjct: 110 NKLAKQFGKHHSSGYRVVNGILRAFIRR 137
>gi|302866833|ref|YP_003835470.1| Fmu (Sun) domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|302569692|gb|ADL45894.1| Fmu (Sun) domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 549
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ + + Y + E+ D + + +G +
Sbjct: 104 RQIAYEAI-----------AAVHRDDAYANLVLPAMLREAGLTGRDAAFATELTYGTLRH 152
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +++ R+D + LR G +++ VP +S V +
Sbjct: 153 TGTLDAIVTD--AAGRDVQRIDPPVRDALRLGAYQILHTR-VPAHAAVSSTVDLVRS-VG 208
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NAVL +++ ++ ++ +
Sbjct: 209 PGATGFANAVLREITSRDADAWVAKLAPAQE 239
>gi|168011444|ref|XP_001758413.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690448|gb|EDQ76815.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 51/184 (27%), Gaps = 45/184 (24%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYE-----------------TYRFCADTELDVES 59
AR A+ LY + G ++ + +R + VE
Sbjct: 24 RAARELALSVLYAAFVSGVHPLKVFEDRVKQRVVANSFDKTLLEGYEHRPDVGENVVVED 83
Query: 60 V----------------------------YLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
Y L R ++ R + ++ +
Sbjct: 84 EATAMALEEALDAEASLEASVLTAPPPLVYNSFALRLARTLVKETAYRWLQQEAILMEII 143
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
KW +L + L IE VP V+++E V +A F P+ IN L
Sbjct: 144 PLKWKVQPKAALLQICVLQMALAEIEATDVPPRVVVNEAVELAKRFCDLAAPRIINGCLG 203
Query: 152 KVSR 155
R
Sbjct: 204 SYIR 207
>gi|294648678|ref|ZP_06726140.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
gi|292825468|gb|EFF84209.1| Sun family protein [Acinetobacter haemolyticus ATCC 19194]
Length = 435
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 23/161 (14%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
Q N+ K + R ++ L + G S +++++
Sbjct: 2 NQSNQSSAKHLNLRAQ----VIKTLLAVQ-NGQSLASVLNQHINI-------------VS 43
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + + G + + + + LT+ + L S L G+ +++ C +P
Sbjct: 44 ERDRGLYHELTLGCLRQWYSLKAITLPLLTKPLD----NEALESCLYLGLYQIL-CTRIP 98
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V ISE V A + +NA+L +VSR+ + ++
Sbjct: 99 VHAAISETVNAAKQLGFEPMSGLVNAILRRVSRETDEFQTA 139
>gi|317494309|ref|ZP_07952723.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917559|gb|EFV38904.1| ribosomal RNA small subunit methyltransferase B [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 430
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +AL + G S + ++ D + + GV+
Sbjct: 9 RAIAAKALGSVLDQGQSLSTVLPAL-------------SKEVSEKDRALLQELCFGVLRV 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + L ++ G+ +L+ +P ++E V A
Sbjct: 56 LPQLEWYIQQLMAKVLTGKQRP--LHYLIMVGIYQLVYTR-IPPHAALAETVNGAVALKR 112
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
IN VL + R+E+ +
Sbjct: 113 PQLKGLINGVLRQFQRQEDQLK 134
>gi|270285005|ref|ZP_06194399.1| transcription antitermination protein NusB [Chlamydia muridarum
Nigg]
gi|270289028|ref|ZP_06195330.1| transcription antitermination protein NusB [Chlamydia muridarum
Weiss]
gi|301336403|ref|ZP_07224605.1| transcription antitermination protein NusB [Chlamydia muridarum
MopnTet14]
Length = 162
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +QALY +++ ++S T E+ ++ + +
Sbjct: 20 PKQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCK 68
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH---SVPVEVIISEYV 131
+ + +D L+++ + + + L +I +ILR + E + +P V+I+E
Sbjct: 69 AIRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETT 127
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+ F Y + I AVL +
Sbjct: 128 RLIKKFSYVEGSSLILAVLGSI 149
>gi|325957114|ref|YP_004292526.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
gi|325333679|gb|ADZ07587.1| 16S rRNA methyltransferase B [Lactobacillus acidophilus 30SC]
Length = 442
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/147 (11%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S + AR +++ L ++ + ++ + S D
Sbjct: 1 MSTSKS-ARAISLETLIKVLQDKSYSNISLNNSLNH-----------SDLSQADQNLATK 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+++G + + ++ + + L +L + +++ VP ++ E
Sbjct: 49 VVYGTIQYRLFLEYQL----KGLVRIKLTEKYLKPLLLMSIYQIVFLDKVPNRAVLDEAN 104
Query: 132 CIAHDFFYGDEPKF--INAVLDKVSRK 156
+A F + +N +L R+
Sbjct: 105 KLAKQFGKHHSSGYRVVNGILRSFIRR 131
>gi|254821720|ref|ZP_05226721.1| Fmu protein [Mycobacterium intracellulare ATCC 13950]
Length = 171
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
A L E D + + +G + +D +I + + +D +L +L
Sbjct: 1 NLALPALLRERGITGRDAAFATELTYGACRSRGLLDAVIGA--AAGRTPQAIDPVLLDLL 58
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
R G +L+ V +S V A F F+N VL +S ++E ++
Sbjct: 59 RLGAYQLL-RTRVDAHAAVSTTVEQAGIEFDSARAGFVNGVLRTISGRDEQSWVAELAP 116
>gi|153837662|ref|ZP_01990329.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
gi|149748952|gb|EDM59779.1| ribosomal RNA small subunit methyltransferase B [Vibrio
parahaemolyticus AQ3810]
Length = 427
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + I +G + ++ + + + ++ G+ +L +
Sbjct: 33 RPRDHALLQEICYGALRYLPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-I 89
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
P + E V + INAVL R +E
Sbjct: 90 PAHAAVGETVEGTKELKGPRLRGLINAVLRNYQRNQEE 127
>gi|227115242|ref|ZP_03828898.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 429
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 18/149 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + Q+ G S + ++ Y+ D + + GV+
Sbjct: 8 RSIAAKVVGQVLDQGQSLSALLPVYQR-------------EVSDKDRALLQELCFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + L ++ G+ +L +P ++E V
Sbjct: 55 LPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLHYTR-IPPHAALAETVEGTVSLKR 111
Query: 140 GDEPKFINAVLDKVSRKEE--IKRSGCVS 166
IN VL + R++E I+R S
Sbjct: 112 PQLKGLINGVLRQFQRQQEELIQREATHS 140
>gi|237806927|ref|YP_002891367.1| sun protein [Tolumonas auensis DSM 9187]
gi|237499188|gb|ACQ91781.1| sun protein [Tolumonas auensis DSM 9187]
Length = 433
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + ++Q+ G S + + + + D + I +G +
Sbjct: 2 KIRATAAKVIFQVVEQGQSLSSALP-------------VAQQLIAAKDRALLQEICYGTL 48
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ + L + L ++ AG+ +L +P +++E V +
Sbjct: 49 RWLNRLEFIADQLLDRQ--LKGKHRSLHYLILAGLYQLFYTR-IPPHAVLAETVNASGLL 105
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
K IN VL R++E
Sbjct: 106 NGDSFRKLINGVLRNAQRQQEE 127
>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
Length = 445
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 17/132 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AV+ L + +E + + + + + + R +++G +
Sbjct: 6 KQREIAVKVL--------------NAFERDKKLREHLEALTAALTPQERAFLRELVNGTV 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D + + + + LR +L VP ++E V +
Sbjct: 52 RFLRLLDFSVER--ASGRRLASQKPTVRNALRLLAYQL-FFTGVPPYAALNETVEVVKQR 108
Query: 138 FYGDEPKFINAV 149
F+NAV
Sbjct: 109 LGKGAAGFVNAV 120
>gi|297622450|ref|YP_003703884.1| Fmu (Sun) domain-containing protein [Truepera radiovictrix DSM
17093]
gi|297163630|gb|ADI13341.1| Fmu (Sun) domain protein [Truepera radiovictrix DSM 17093]
Length = 421
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 18/140 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ + ++ D + +++G +
Sbjct: 3 ARETALSILRRV------------HRGAFAAPVLSDALARGGLSAADRGFVTHLVYGSLR 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D + L + LR G E + P +++E+V I
Sbjct: 51 LELALDAQLRPLLQNPAKL---PPGVLDALRLGAFEALYS-GTPRRAVVNEWVAIVKRR- 105
Query: 139 YGDEPKFINAVLDKV-SRKE 157
+G +NAVL +V +R+
Sbjct: 106 HGRLAGLVNAVLRRVEAREL 125
>gi|271502215|ref|YP_003335241.1| sun protein [Dickeya dadantii Ech586]
gi|270345770|gb|ACZ78535.1| sun protein [Dickeya dadantii Ech586]
Length = 431
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L Q+ G S ++++ + D + I GV+
Sbjct: 8 RSIAATTLLQVVEQGQSLSQLLPALQR-------------DISERDRGLLQEICFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D + + + + +L +L G+ +LI +P ++E V A
Sbjct: 55 LPQLDWYLRQLMAK--PLTGKQKVLHYLLMVGLYQLIHTR-IPPHAALAETVNGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQREQEA 131
>gi|23016809|ref|ZP_00056561.1| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
magnetotacticum MS-1]
Length = 432
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 16 RGIA-----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ A R AV L + ++ + + S D + R
Sbjct: 2 KRAAHTDNPRAIAVDLL----------SMVLD--KARLLDDVLDDSRLSKLEERDRGFVR 49
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+++ + R ID LI C + LR G+ +L+ P IS
Sbjct: 50 MLLGTTLRRLGQIDALIEHC--VEKPMRAGAAGAEHALRLGICQLLFLDVAP-HAAISTT 106
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V + K +NAVL ++ R+
Sbjct: 107 VDLVKGSKLAGFAKLLNAVLRRLDREGRE 135
>gi|163803318|ref|ZP_02197196.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
gi|159172888|gb|EDP57727.1| methionyl-tRNA formyltransferase [Vibrio sp. AND4]
Length = 427
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSNALP-------------AAQQNVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRSQEE 127
>gi|88809208|ref|ZP_01124717.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
gi|88787150|gb|EAR18308.1| Sun protein (Fmu protein) [Synechococcus sp. WH 7805]
Length = 430
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 2/114 (1%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A + D + +G + +Q +D + + L
Sbjct: 13 AYADVALERALRQHPLQAADRGLATELAYGTIRWRQWLDAWLDKLGKV--PARKQPPRLR 70
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+L G+ +++ +P ++ V +A +N +L R +
Sbjct: 71 WLLHLGLYQVLRMERIPPAAAVNTSVELAKGGPLARLAPVVNGLLRAALRARDA 124
>gi|312797049|ref|YP_004029971.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
454]
gi|312168824|emb|CBW75827.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
454]
Length = 60
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
+L E +P V+I+E V +A F D K++N VLDK++
Sbjct: 1 MLLIAAYEFQHHFEIPYRVVINEAVELAKTFGGADGYKYVNGVLDKLAVTMRADE 55
>gi|213418736|ref|ZP_03351802.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 197
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ + G S + ++ + D + +
Sbjct: 1 MKKQNNLRSLAAQAVELVVEQGQSLSNVLPPLQQ-------------KVADKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ ++ LI+ ++ + + + ++ G +L+ VP ++E V
Sbjct: 48 CFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYTR-VPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + R++E
Sbjct: 105 GAVSIKRPQLKGLINGVLRQFQRQQET 131
>gi|262202278|ref|YP_003273486.1| Fmu (Sun) domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262085625|gb|ACY21593.1| Fmu (Sun) domain protein [Gordonia bronchialis DSM 43247]
Length = 460
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR+AA T + E + Y ++ E D + +G
Sbjct: 19 ARVAA-----------RDTLRAVRERDAYANLVLPKMLRERHITGRDAALATELTYGTAR 67
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ ID + +D L +LR G +L+ +S V +
Sbjct: 68 AQGIIDA--IIAAAAGRPVAEIDGQLLDVLRLGAYQLLRTRIGS-HAAVSTSVDLVRAEN 124
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
F+NAVL K+S+++E ++
Sbjct: 125 GMGPAGFVNAVLRKISQRDEDIWVDELAP 153
>gi|289644960|ref|ZP_06477001.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
gi|289505233|gb|EFD26291.1| NusB/RsmB/TIM44 [Frankia symbiont of Datisca glomerata]
Length = 518
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 51/156 (32%), Gaps = 17/156 (10%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q + + ARL A + L +D G ++ R
Sbjct: 13 QRARPPASRADP---ARLLAWEVLRAVDERGAYANLLLPALLAGR-----------QLSA 58
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + +G + +D L++ +D + LR G +L+ VP
Sbjct: 59 RDRGFATELTYGTLRALGVLDGLLA--TVANRPVDEVDPPVRDALRLGAYQLL-RTRVPA 115
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V + +F NAVL +++ + E
Sbjct: 116 RAAVDSTVDLVRRTSGERPVRFANAVLRRLAARLEA 151
>gi|15834839|ref|NP_296598.1| transcription antitermination protein NusB [Chlamydia muridarum
Nigg]
gi|13878610|sp|Q9PL88|NUSB_CHLMU RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|7190258|gb|AAF39091.1| N utilization substance protein B, putative [Chlamydia muridarum
Nigg]
Length = 164
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +QALY +++ ++S T E+ ++ + +
Sbjct: 22 PKQKLRELVLQALYALEMAPKGEDSLVSLLMT-----------EASVSKKNVLYALMFCK 70
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH---SVPVEVIISEYV 131
+ + +D L+++ + + + L +I +ILR + E + +P V+I+E
Sbjct: 71 AIRANQSELDALLNATI-RTTTLANLTIIERNILRMMLFEHQQNQESSPIPTAVLIAETT 129
Query: 132 CIAHDFFYGDEPKFINAVLDKV 153
+ F Y + I AVL +
Sbjct: 130 RLIKKFSYVEGSSLILAVLGSI 151
>gi|239904671|ref|YP_002951409.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
RS-1]
gi|239794534|dbj|BAH73523.1| rRNA (cytosine-C(5)-)-methyltransferase [Desulfovibrio magneticus
RS-1]
Length = 477
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L ++ S + + A +S D +++G +
Sbjct: 45 ARRIALTVLGRVLPSPKSPGQDVQ-------AALDVALADSTLDPRDRGLATELVYGYLR 97
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +++ L + + + IL E++ C VP + V
Sbjct: 98 LCGRLDYILAQFLKNPTAV---PLAVRRILGLAAYEILHCAKVPAYASVDWAVSAVRKAG 154
Query: 139 YGDEPKFINAVLDKVS 154
NAVL +V+
Sbjct: 155 GKGLSGMANAVLRRVA 170
>gi|307316130|ref|ZP_07595574.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
gi|306897970|gb|EFN28712.1| Fmu (Sun) domain protein [Sinorhizobium meliloti AK83]
Length = 470
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 2 TIQDNKKDLKLSHRRG-----------------IARLAAVQALYQIDIIGCSTTEIISEY 44
D++ H R +R AA + L + ++
Sbjct: 5 NKNDSRPKRSREHNRSGGAGARPGADAAAKLGLKSRQAAAKILAAVVDRKTPLDGMLDP- 63
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + I I S + L
Sbjct: 64 -------ERGNPAYRELSEADRALVRAILNSALRHLPRIRAAIDSL--LQTPLPEGARAL 114
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
+L +++ VP + V A +NAVL ++SR++E
Sbjct: 115 EHVLTVAATQILYLD-VPDHSAVDLAVEQAQSDPRNRRFASLVNAVLRRLSREKEE 169
>gi|195970119|ref|NP_387430.2| putative sun protein [Sinorhizobium meliloti 1021]
gi|307302539|ref|ZP_07582296.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
gi|187904238|emb|CAC47903.2| Hypothetical Sun protein [Sinorhizobium meliloti 1021]
gi|306903209|gb|EFN33799.1| Fmu (Sun) domain protein [Sinorhizobium meliloti BL225C]
Length = 470
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/176 (14%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 2 TIQDNKKDLKLSHRRG-----------------IARLAAVQALYQIDIIGCSTTEIISEY 44
D++ H R +R AA + L + ++
Sbjct: 5 NKNDSRPKRSREHNRSGGAGARPGADAAAKPGLKSRQAAAKILAAVVDRKTPLDGMLDP- 63
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + I I S + L
Sbjct: 64 -------ERGNPAYRELSEADRALVRAILNSALRHLPRIRAAIDSL--LQTPLPEGARAL 114
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
+L +++ VP + V A +NAVL ++SR++E
Sbjct: 115 EHVLTVAATQILYLD-VPDHSAVDLAVEQAQSDPRNRRFASLVNAVLRRLSREKEE 169
>gi|256383931|gb|ACU78501.1| transcription antitermination factor NusB [Mycoplasma mycoides
subsp. capri str. GM12]
gi|256384763|gb|ACU79332.1| transcription antitermination factor NusB [Mycoplasma mycoides
subsp. capri str. GM12]
gi|296455225|gb|ADH21460.1| transcription antitermination factor NusB [synthetic Mycoplasma
mycoides JCVI-syn1.0]
Length = 132
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
R +Q Y+ ++ S I + + D+ + I +
Sbjct: 8 SKKRKLLIQTFYKYQLLNASIDYIHQDILD----------DVQNINNKDVLF---EIEQI 54
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
++ + I+ ++ W + R+ ++ +IL G E++ + P V I+E V +
Sbjct: 55 AKKQTDLINHININVSSSWKWDRIPAVIRAILIVGTYEILYT-NTPKPVTINEMVKYVKE 113
Query: 137 FFYGDEPKFINAVLDKVSR 155
+ KF+NAVLDK+ +
Sbjct: 114 IEPDFDYKFVNAVLDKLVK 132
>gi|91204618|emb|CAJ70846.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 462
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
E ++ D +++G+ + +D ++S +++ L LR G+
Sbjct: 26 EERCQQTNVSRRDKHLLLELVNGITRHRLSLDTILSFFSKI--PPQKIEPWLLYALRLGI 83
Query: 113 LELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
++I +P ++ V + + D +F NA+L V R + K
Sbjct: 84 YQMIFLDKIPHSAAVNTSVELVKNLIRRPDAARFANAILRAVDRTIKNK 132
>gi|83594989|ref|YP_428741.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
11170]
gi|83577903|gb|ABC24454.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC
11170]
Length = 438
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Query: 39 EIISEYETY-RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
+++S + R D D + R++ + R ++ +I + L
Sbjct: 14 DLLSAVLDHGRPLDDVFDAATRKLEPRDRAFARLLAATTLRRMGRLEKVIKTFLDR--PL 71
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
R + ILR G +++ P ++ V +A INAVL KV+
Sbjct: 72 PRRAVGAKHILRLGAAQMLFLD-TPPHAAVATSVDVARVRRLAPYAGLINAVLRKVADHG 130
Query: 158 EIKRSGCVSAIT 169
+ +G +
Sbjct: 131 AARLAGFDDPLA 142
>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
Length = 429
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 16/145 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + LYQ+ G S +++ + + + +GV+ +
Sbjct: 5 RALAAETLYQVVDQGLSLNQVLPAAAAKVAVKEK-------------ALLQQLCYGVLRQ 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + LT+ + ++ G+ +L P ++E V
Sbjct: 52 LPSLEHYCRTLLTK--PLKGKQRVFQFLVYVGIYQLQHMR-TPAHAAVAETVNALQALQA 108
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGC 164
+NAVL R++ +
Sbjct: 109 PGLKGLVNAVLRNFQRQQAELEAAA 133
>gi|329946677|ref|ZP_08294089.1| putative ribosomal RNA small subunit methyltransferase B
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328526488|gb|EGF53501.1| putative ribosomal RNA small subunit methyltransferase B
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 463
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + EL + D + + +G + + D +ISSC + R+D +
Sbjct: 13 DAFANLLLPELLDSADLDRRDAGFTTALTYGTLRLQGRYDAMISSCTDR--TLERIDPTV 70
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+LR G +L+ +S V +A D F+NA++ ++S
Sbjct: 71 LDVLRLGCHQLMGMRVAQ-HAAVSTTVDLAADSCGRGAATFVNAIMRRLS 119
>gi|209525659|ref|ZP_03274196.1| NusB antitermination factor [Arthrospira maxima CS-328]
gi|209493828|gb|EDZ94146.1| NusB antitermination factor [Arthrospira maxima CS-328]
Length = 209
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ I+ + ++ +D + + + W SRL I ILR V EL+ V
Sbjct: 109 QEDVYSYAVKILVELNTHREAVDSSLEEAMVD-WQLSRLPRIDRDILRIAVTELLYL-GV 166
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ ++E V +A + D +FIN VL +V + + S
Sbjct: 167 QEQIAVNEAVELAKRYSDQDSYRFINGVLRRVVDHLKTESS 207
>gi|262373879|ref|ZP_06067157.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
junii SH205]
gi|262311632|gb|EEY92718.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
junii SH205]
Length = 435
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 19/140 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R ++ L + G S T +++++ D + + G + +
Sbjct: 15 RAQVIKTLLAVQ-NGQSLTSVLNQHINM-------------VSERDRGLYHELTLGCLRQ 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + LT+ + L S L G+ +++ C +PV ISE V A +
Sbjct: 61 WFSLKAITLPLLTKPLD----NEALESCLYLGLYQIL-CTRIPVHAAISETVNAAKQLGF 115
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+NA+L +VSR+ +
Sbjct: 116 EPMSGLVNAILRRVSRETDE 135
>gi|146319474|ref|YP_001199186.1| transcription termination factor [Streptococcus suis 05ZYH33]
gi|145690280|gb|ABP90786.1| Transcription termination factor [Streptococcus suis 05ZYH33]
Length = 64
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
MI +I+R G+ E++ P V ++E + +A +F KF+N VL + +
Sbjct: 1 MIDKNIMRLGLFEILHFEETPDRVAVNEAIELAKEFSDESSAKFVNGVLSQFIK 54
>gi|294786452|ref|ZP_06751706.1| Sun protein [Parascardovia denticolens F0305]
gi|315226022|ref|ZP_07867810.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
denticolens DSM 10105]
gi|294485285|gb|EFG32919.1| Sun protein [Parascardovia denticolens F0305]
gi|315120154|gb|EFT83286.1| ribosomal RNA small subunit methyltransferase B [Parascardovia
denticolens DSM 10105]
Length = 540
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 20/162 (12%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
KKDL R A ++L ++ + + D
Sbjct: 16 KKDLSP-------RSIAWKSLIRVHRNQA--------FSNLLVPQELSSFSPDELGGRDR 60
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+++G + + +D +I+ R+++ + R GV +L+ P
Sbjct: 61 AAVTDMVYGTLRWQGFLDAVIAD--VSFRPLKRIEIPVLDAARLGVYQLLFL-GSPDYAA 117
Query: 127 ISEYVCIAHD--FFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+S+ V + F+NA+L KV+ + + ++
Sbjct: 118 VSQTVGLLRRGGRSDARAAGFVNALLRKVATRSRQEWEAVLT 159
>gi|113954607|ref|YP_729249.1| transcription antitermination protein NusB [Synechococcus sp.
CC9311]
gi|113881958|gb|ABI46916.1| putative transcription antitermination factor NusB [Synechococcus
sp. CC9311]
Length = 210
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ V+ +++ ID ++ + E W +RL I ILR V++L E
Sbjct: 112 QDQVRREAMQRVTFVLKKRKAIDQMLDGVM-EGWRLTRLPRIDRDILRLAVIDLSELK-T 169
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P V +E V +AH F K IN VL ++
Sbjct: 170 PAAVACNEAVELAHRFSDEQGRKMINGVLRRLQ 202
>gi|85060226|ref|YP_455928.1| 16S rRNA methyltransferase B [Sodalis glossinidius str.
'morsitans']
gi|123738922|sp|Q2NQQ2|RSMB_SODGM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|84780746|dbj|BAE75523.1| putative rRNA methylase [Sodalis glossinidius str. 'morsitans']
Length = 433
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ A +A+ Q+ G S ++ + D + + G+M
Sbjct: 8 RVIAARAVAQVLDQGQSLGALLPPLQA-------------PLSEKDRALLQELCFGIMRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ L+ + + + + +L G+ +L +P ++E V A
Sbjct: 55 LPQLEWLLRQLMAK--PLTGKQRPVHYLLMVGLYQLTYTR-IPPHAALAETVEGAVAMKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL + R++
Sbjct: 112 PQFKGLINGVLRQFQRQQ 129
>gi|148545339|ref|YP_001265441.1| sun protein [Pseudomonas putida F1]
gi|148509397|gb|ABQ76257.1| sun protein [Pseudomonas putida F1]
Length = 436
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLVGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P I E V A +NAVL + R+ E +G
Sbjct: 88 R-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLAG 131
>gi|313496438|gb|ADR57804.1| RsmB [Pseudomonas putida BIRD-1]
Length = 436
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLVGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P I E V A +NAVL + R+ E +G
Sbjct: 88 R-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLAG 131
>gi|220903300|ref|YP_002478612.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|219867599|gb|ACL47934.1| NusB/RsmB/TIM44 [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 526
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/173 (15%), Positives = 54/173 (31%), Gaps = 23/173 (13%)
Query: 12 LSHRRGIA--------RLAAVQALYQIDII---GCSTTEIISEYETYRFCADTELDVESV 60
+S R I+ R AA++AL +D + ++ + ++ +
Sbjct: 1 MSRNRNISLRKLSCNGRTAALRALLLVDDGLSAQQALASVLDAPVAHGASGNSREKSHTA 60
Query: 61 -------YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
D +++G + + ++ L+ L + +L V
Sbjct: 61 NAGRCQGLSAQDRALCTELVYGCLRTELRLNFLLGRVLPRPQGL---PRPMQILLALAVY 117
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
L+ VP ++ E V A F + N L + R E S
Sbjct: 118 GLLFQDKVPSHAVVYEAVEQARALFGQGLARVANGALRSLQRMGE--EPAQPS 168
>gi|26986811|ref|NP_742236.1| sun protein [Pseudomonas putida KT2440]
gi|46396870|sp|Q88RR3|RSMB_PSEPK RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|24981407|gb|AAN65700.1|AE016196_11 sun protein [Pseudomonas putida KT2440]
Length = 436
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLVGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P I E V A +NAVL + R+ E +G
Sbjct: 88 R-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLAG 131
>gi|123965243|ref|YP_001010324.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9515]
gi|123199609|gb|ABM71217.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9515]
Length = 208
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E I ++D Q ID I + W RL I ILR +++ P+ V
Sbjct: 117 REDVNHRIKSIIDNLQTIDSEIDEVMDG-WRLKRLPRIDRDILRLAYIDIHLLD-TPIAV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E V +A+ + K IN VL ++ +
Sbjct: 175 ACDEAVNLANKYSDTQGRKMINGVLRRLQK 204
>gi|254455633|ref|ZP_05069062.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
gi|207082635|gb|EDZ60061.1| antitermination protein NusB [Candidatus Pelagibacter sp. HTCC7211]
Length = 134
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 14 HRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+ + R+ +Q LY + ++ +RF ++ + I+
Sbjct: 6 NPKNNPRVIIIQKLY----GKFYNEDNNLDFPKHRF----------------KKFIKDIV 45
Query: 74 HGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
G ++R I + + L ++ F LD + +IL+A E + +V + +II EY+
Sbjct: 46 LGTIERNDLILSELDTKLGNEFVFENLDKVFQTILKAATYEFLYKPNVSINIIIKEYLNS 105
Query: 134 AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ F + K++NA+LD + +K +
Sbjct: 106 SNFFLENSQTKYLNALLDNIGKKLRSNNA 134
>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
Length = 429
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAKAISQVLDKGQSLSTVLPGLQ-------------KSISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + ++ G+ +L+ +P ++E V
Sbjct: 55 LPQLEWCIQQLMARPMTGKQ--RVFHYLIMVGLYQLLYTR-IPPHAALAETVEGTVALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
+N VL + R++
Sbjct: 112 PQLKGLVNGVLRQFQRQQ 129
>gi|325478752|gb|EGC81863.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 426
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 6/127 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHV--DLEWFRVIIHGVMDRKQHIDLLISSCLT 92
I + + D + +L + +I+GV++ K ++D +I
Sbjct: 2 TDLELIFNSLSNIIYKDKKSNDEINYLSDKASNLSYITKVIYGVLENKIYLDYMIDKLSK 61
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
++ + IL G+ + + + + V + F+NA+L
Sbjct: 62 V--KLRKIHKNVLLILEIGIYNIHFLETKDY-ATVDKLVDLTKK-KNKRSAGFVNAILRN 117
Query: 153 VSRKEEI 159
R E+
Sbjct: 118 FIRNEKE 124
>gi|227904234|ref|ZP_04022039.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
gi|227867882|gb|EEJ75303.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus
acidophilus ATCC 4796]
Length = 446
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+K AR +++ L ++ G Y + S D
Sbjct: 1 MKKLSTSKSARAISLETLIKVLGNGS-----------YSNISLNNSLKNSDLAIADQNLA 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
I++G + + ++ + + + +L + ++I VP I+ E
Sbjct: 50 TRIVYGTIQYRIFLEYQL----NGLIKTKLTEKYIKPLLLMSLYQIIFLDKVPNRAILDE 105
Query: 130 YVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+A F + +N +L R+
Sbjct: 106 ANKLAKKFGKHHSSGYRIVNGILRSFIRR 134
>gi|90019668|ref|YP_525495.1| Sun protein [Saccharophagus degradans 2-40]
gi|89949268|gb|ABD79283.1| ribosomal RNA small subunit methyltransferase B [Saccharophagus
degradans 2-40]
Length = 445
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ + + F D + +++ G+ ++ P I E V A K I
Sbjct: 65 LIARKLLQKPFKSRDNDVYALIVLGIYQMDYLR-TPDHAAIGETVEAAKALNKPWASKLI 123
Query: 147 NAVLDKVSRKE 157
N VL R++
Sbjct: 124 NGVLRNYQREK 134
>gi|240947872|ref|ZP_04752312.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
gi|240297834|gb|EER48270.1| ribosomal RNA small subunit methyltransferase B [Actinobacillus
minor NM305]
Length = 444
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 20/159 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M + N+K ++ AR A + Q+ G S +I + +S
Sbjct: 1 MKVTKNRK----MKKKQNARAVAAHIILQVLDQGKSLATLIP-------------EAQSQ 43
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL + I GV ++ +I + ++ +L G+ +L+
Sbjct: 44 VESKDLPLVQEIAFGVCRVLPRLENIIKQL--VEKPLKGKTRLVHCLLLVGLYQLLYMR- 100
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP + E V N VL + R++E
Sbjct: 101 VPAHAAVDEVVNATKSLKLDSFRALTNGVLRRFLREQET 139
>gi|296269348|ref|YP_003651980.1| Fmu (Sun) domain-containing protein [Thermobispora bispora DSM
43833]
gi|296092135|gb|ADG88087.1| Fmu (Sun) domain protein [Thermobispora bispora DSM 43833]
Length = 465
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 50/153 (32%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+AA L +D ++ R + + +G +
Sbjct: 29 EARIAAYDLLRAVDERDAYANLLMPTLLRQR-----------KITGREAALATELAYGTL 77
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
D +I +C LD L +R G +L+ +P +S + +
Sbjct: 78 RGLGTYDEIIGACGDRAPG--ELDPPLRDAIRLGAHQLL-RTRIPAHAAVSSTIDLIRLR 134
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++ NAVL KV+ + + V+ +
Sbjct: 135 VGPGPSRYANAVLRKVAGRTLDEWLAIVAPPKE 167
>gi|223943803|gb|ACN25985.1| unknown [Zea mays]
Length = 284
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S + S E A +L + L + E + G ID +I
Sbjct: 152 ASQNDKDSANEADVLSAPPKLVYNNYVLRLSRELLVAVASGWDKHVVIIDKIIPQ----A 207
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
W + IL + + + P +V+I+E V +A F G P+ IN L
Sbjct: 208 WKDEPVARILELCILHIAMAEMASKGTPHKVVINEAVDLAKRFCDGGAPRVINGCLRTFV 267
Query: 155 RK 156
+
Sbjct: 268 KD 269
>gi|29840529|ref|NP_829635.1| transcription antitermination protein NusB [Chlamydophila caviae
GPIC]
gi|29834878|gb|AAP05513.1| N utilization substance protein B, putative [Chlamydophila caviae
GPIC]
Length = 165
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R +Q LY + + ++ + + L
Sbjct: 21 PKQKMREIVLQMLYALGMDPSCEESLVPLLMSETAVTQRHAFTALSFSKEILA------- 73
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
K L+ + + S +L ++ ++LR + E + ++I+E +
Sbjct: 74 -----KSSELDLLIAQTVKNTSLEKLTLMEKNVLRLTLFEHFHGQPINTAILIAEATRLV 128
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F Y + F++AVL+ + R
Sbjct: 129 KKFSYIEACTFVHAVLNDIFR 149
>gi|15603426|ref|NP_246500.1| hypothetical protein PM1561 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|46397017|sp|Q9CKP7|RSMB_PASMU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|12721953|gb|AAK03645.1| Sun [Pasteurella multocida subsp. multocida str. Pm70]
Length = 446
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q + Q+ G S + +I D + DL + I GV
Sbjct: 18 RAIAAQIILQVLDQGKSLSTLIP-------------DTQHQVKTQDLPLLQEICFGVCRV 64
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++L+I + + + L + +P + E V
Sbjct: 65 LPRLELIIKQLVDKPLKGKTRIVHCLL---LVGLYQLLYTRIPAHAAVDEVVNATTALKA 121
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+N VL + R++E
Sbjct: 122 EHFRGLVNGVLRRFLREQET 141
>gi|227542164|ref|ZP_03972213.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181993|gb|EEI62965.1| 16S rRNA M(5)C 967 methyltransferase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 620
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E+ D + I +G M +D +I SC + S LD I+
Sbjct: 156 AYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVL 213
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ LR G+ +L+ + V + F+NA+L V +K + +
Sbjct: 214 NALRMGIYQLLYTRVED-HAAVDTSVRLV----PQRVKGFVNAILRAVQKKPLEQWIEEL 268
Query: 166 SA 167
+
Sbjct: 269 AP 270
>gi|227488841|ref|ZP_03919157.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091263|gb|EEI26575.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 470
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 7/122 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y A E+ D + I +G M +D +I SC + S LD I+
Sbjct: 6 AYGNIALPREITEAGLSGRDAAFATEIGYGTMRMVGVLDEIIGSCSSR--PMSELDPIVL 63
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+ LR G+ +L+ + V + F+NA+L V +K + +
Sbjct: 64 NALRMGIYQLLYTRVED-HAAVDTSVRLV----PQRVKGFVNAILRAVQKKPLEQWIEEL 118
Query: 166 SA 167
+
Sbjct: 119 AP 120
>gi|13357860|ref|NP_078134.1| transcription termination factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|170761973|ref|YP_001752382.1| transcription antitermination factor NusB [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|171920328|ref|ZP_02691332.2| transcription antitermination factor NusB [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|183508752|ref|ZP_02690168.2| transcription antitermination factor NusB [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|186701937|ref|ZP_02554155.2| transcription antitermination factor NusB [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|11357059|pir||A82909 transcription termination factor UU300 [imported] - Ureaplasma
urealyticum
gi|6899275|gb|AAF30709.1|AE002127_7 transcription termination factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|168827550|gb|ACA32812.1| transcription antitermination factor NusB [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|171902748|gb|EDT49037.1| transcription antitermination factor NusB [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|182675685|gb|EDT87590.1| transcription antitermination factor NusB [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|186700685|gb|EDU18967.1| transcription antitermination factor NusB [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 127
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 16/135 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ Q +Y I + + ++V L
Sbjct: 8 RVKLFQFIYHWLITKKNKPIALKCALVDFDLDLNWINVGEYILD---------------N 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + +I +++ W+F RL + ++L + E + P ++II + + H++
Sbjct: 53 YEQLTKMIKPLISKDWTFERLSYVEQALLLSAYGEYLVLK-TPKKIIIDQTLITTHNYSN 111
Query: 140 GDEPKFINAVLDKVS 154
+ KFINA+LD++
Sbjct: 112 NESYKFINAILDQLL 126
>gi|254429168|ref|ZP_05042875.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
DG881]
gi|196195337|gb|EDX90296.1| ribosomal RNA small subunit methyltransferase B [Alcanivorax sp.
DG881]
Length = 427
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ E+ + D R I GV + ++ ++ L++ + L
Sbjct: 15 ESLREVLRDFPLQGSDGGQMRDICFGVCRHLRPLNHWLNQQLSK--PLKASAQPVRLALL 72
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
AG+ EL P I++ Y + NAVL K S+
Sbjct: 73 AGLYELWFSDR-PAHAIVNAYPQLCRKLKAPWAAGLSNAVLRKASQ 117
>gi|242277628|ref|YP_002989757.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
gi|242120522|gb|ACS78218.1| NusB/RsmB/TIM44 [Desulfovibrio salexigens DSM 2638]
Length = 427
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D + I++G + + + +++ L+ + +L E++
Sbjct: 39 AKLDGRDRGFVTEILYGYLRMRLRLQSVLNCFLSRPDGL---PAPILRVLGMAAYEILHM 95
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
VP + V A G NAVL KV+R E
Sbjct: 96 D-VPAYASVDWGVDSAKRLSRGKLGGLANAVLRKVARLAE 134
>gi|227504402|ref|ZP_03934451.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
striatum ATCC 6940]
gi|227199050|gb|EEI79098.1| possible rRNA SAM-dependent methyltransferase RmsB [Corynebacterium
striatum ATCC 6940]
Length = 506
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 17/169 (10%)
Query: 5 DNKKDLKLSHRRG---IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
K + RR AR + + L ++ + + +
Sbjct: 54 QEKNSFVQAARRSGVDTARAVSFEVLRRV-----------HSDDAFANLTLPKALRVHKL 102
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + +G + + +D +I C + + + LR G +++
Sbjct: 103 EGRDAAFATELTYGSLRTEGVLDAVIGECSSRA--LDAIAPEVLDALRLGAYQVLFTRVE 160
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
P + V + + F N ++ ++R K ++ +
Sbjct: 161 P-HAAVDTTVRLVEAADFEKAKGFANGIMRTITRTPAEKWLDKLAPQGE 208
>gi|86359687|ref|YP_471579.1| RNA methyltransferase - sun protein [Rhizobium etli CFN 42]
gi|86283789|gb|ABC92852.1| probable RNA methyltransferase - sun protein [Rhizobium etli CFN
42]
Length = 464
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 12/176 (6%)
Query: 1 MTIQDNKKDL---KLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYE--TYRFCADTE 54
M KK K S R R A ++ L ++ +
Sbjct: 1 MNSDGTKKPFRKQKPSSDRPTGRSAPLKPGLQARAAAAKILAAVVDRKLPLDGALDHEHG 60
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D R I++ + ID I+S + L +L G +
Sbjct: 61 NPAYKALGESDRALVRAILNTTLRHLPRIDAAIASL--LESPLPEGARALHHVLAIGAAQ 118
Query: 115 LIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
++ VP + V A+ K +NAVL ++ R+++ + R G V+
Sbjct: 119 ILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDEVLARIGKVAP 173
>gi|284051645|ref|ZP_06381855.1| transcription antitermination protein NusB [Arthrospira platensis
str. Paraca]
gi|291566673|dbj|BAI88945.1| transcription antitermination protein NusB [Arthrospira platensis
NIES-39]
Length = 210
Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
++G + S + V+ + I+ + ++ +D + + +
Sbjct: 79 MVGEAIALAQSAINRLSTAVELPELVQLASQQEVHSYAVKILVELNTHREALDSCLEAAM 138
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ W RL I ILR V EL+ V ++ ++E V +A + + +FIN VL
Sbjct: 139 VD-WQLGRLPHIDRDILRIAVTELLYM-GVQEQIAVNEAVELAKRYSDHNSYRFINGVLR 196
Query: 152 KVSRKEEIKRSG 163
+V + + + S
Sbjct: 197 RVVDQMKTQSSS 208
>gi|168019738|ref|XP_001762401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686479|gb|EDQ72868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 465
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEK-WSFSRLDMILCSILRAGVLELIECHSVPV 123
+ + G++ K+++D LI S + + R++ +L ILR G+ ELI+ +P
Sbjct: 43 ERRLVTDEVAGIVRWKRYLDFLIFSFFKQDVRDYDRMEPLLRQILRVGLYELIKLE-MPP 101
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+++E V +A +N +L V R ++
Sbjct: 102 HAVLNETVQLAKVALRAGAGNLVNGLLRDVVRHQD 136
>gi|189426656|ref|YP_001953833.1| sun protein [Geobacter lovleyi SZ]
gi|189422915|gb|ACD97313.1| sun protein [Geobacter lovleyi SZ]
Length = 464
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 57/168 (33%), Gaps = 19/168 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ Q S R AA L ++ ++I + + +
Sbjct: 5 MSKQQPATPATGSP-----RQAAYTTLQRLSGSDLHADDLIDQELSR-----------NQ 48
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D F ++ GV+ R+ +D + + RL++ + +LR G+ +L
Sbjct: 49 LQGPDRGLFAELVFGVLRRQGTLDHYLKQL--VQQPLERLELPVLLLLRLGLYQLRYLDR 106
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
VP + V + ++ IN VL R++E +
Sbjct: 107 VPSHAAVHATVELTNEIL-PRAKGLINGVLRSYLRRQESLTLPDPARQ 153
>gi|150398383|ref|YP_001328850.1| Fmu (Sun) domain-containing protein [Sinorhizobium medicae WSM419]
gi|150029898|gb|ABR62015.1| Fmu (Sun) domain protein [Sinorhizobium medicae WSM419]
Length = 470
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 12/143 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R AA + L + ++ + V D R I++ +
Sbjct: 38 KSRQAAAKILAAVVDRKTPLDGMLDP--------ERGNPVYRELNDADRALVRAILNSAL 89
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
I I S + L +L +++ VP + V A
Sbjct: 90 RHLPRIRAAIDSL--LQTPLPEGARALEHVLTVAAAQILYLD-VPDHSAVDLAVEQAQSD 146
Query: 138 -FYGDEPKFINAVLDKVSRKEEI 159
+NAVL ++SR++E
Sbjct: 147 PRNRRFASLVNAVLRRLSREKEA 169
>gi|110832990|ref|YP_691849.1| tRNA and rRNA cytosine-C5-methylase [Alcanivorax borkumensis SK2]
gi|110646101|emb|CAL15577.1| tRNA and rRNA cytosine-C5-methylase, putative [Alcanivorax
borkumensis SK2]
Length = 447
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 15/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL+AV+AL ++ + + D R I GV
Sbjct: 17 RLSAVRALNRVLPGKGDGESLREVLRDF------------PLQGSDGGQMRDICFGVCRH 64
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ++ ++ L++ + L AG+ EL + P I++ Y +
Sbjct: 65 LRPLNHWLNQQLSK--PLKGSAQPVRLALLAGLYELWFS-NRPAHAIVNAYPQLCRKLKA 121
Query: 140 GDEPKFINAVLDKVSR 155
NAVL K S+
Sbjct: 122 PWAAGLSNAVLRKASQ 137
>gi|72383173|ref|YP_292528.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. NATL2A]
gi|72003023|gb|AAZ58825.1| antitermination protein NusB [Prochlorococcus marinus str. NATL2A]
Length = 208
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
E + V++++ ID + S + E W RL I ILR ++LI+ +
Sbjct: 109 QKEIRELALRRVDLVIEKQDEIDHKLDSVM-EGWRLKRLPRIDSDILRLAWVDLIDF-NT 166
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P+ V +E V +A+ + + IN VL K+
Sbjct: 167 PMAVTCNEAVNLANRYSDEQGRRMINGVLRKLQ 199
>gi|309806415|ref|ZP_07700424.1| putative transcription antitermination protein NusB [Lactobacillus
iners LactinV 03V1-b]
gi|308167197|gb|EFO69367.1| putative transcription antitermination protein NusB [Lactobacillus
iners LactinV 03V1-b]
Length = 100
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
++ I+ GVM K ID ++ L + W+ RL+ I IL G+ E+ +
Sbjct: 7 KEFPDYAYEILQGVMKEKSSIDANLTKYLKKGWTLERLNKIDLVILEVGLFEIQNSKVIK 66
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++E + + +F FIN +L K
Sbjct: 67 PVSALNEALNMCDEFSSAKSKGFINGILANFIDK 100
>gi|315503248|ref|YP_004082135.1| fmu (sun) domain protein [Micromonospora sp. L5]
gi|315409867|gb|ADU07984.1| Fmu (Sun) domain protein [Micromonospora sp. L5]
Length = 541
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ + + Y + E+ D + + +G +
Sbjct: 96 RQIAYEAI-----------AAVHRDDAYANLVLPAMLREAGLTGRDAAFATELTYGTLRH 144
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +++ R+D + LR G +++ VP +S V +
Sbjct: 145 TGTLDAIVTD--AAGRDVQRIDPPVRDALRLGAYQILHTR-VPAHAAVSSTVDLVRS-VG 200
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NAVL +++ ++ ++ +
Sbjct: 201 PGATGFANAVLREITSRDADAWVAKLAPAPE 231
>gi|15618897|ref|NP_225183.1| transcription antitermination protein NusB [Chlamydophila
pneumoniae CWL029]
gi|15836520|ref|NP_301044.1| transcription antitermination protein NusB [Chlamydophila
pneumoniae J138]
gi|7387979|sp|Q9Z6S0|NUSB_CHLPN RecName: Full=N utilization substance protein B homolog;
Short=Protein nusB
gi|4377317|gb|AAD19126.1| CT832 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|8979362|dbj|BAA99196.1| CT832 hypothetical protein [Chlamydophila pneumoniae J138]
Length = 160
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R +Q LY +D+ + ++ + + + V LE
Sbjct: 24 KMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILE---------- 73
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K LI + SF LD++ ++LR + E + ++I+E + + F
Sbjct: 74 --KSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKF 131
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSG 163
Y + FI A+L+ + + +
Sbjct: 132 SYSEACPFIQAILNDIFTDSSLNENS 157
>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
Length = 427
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + K + +
Sbjct: 9 SYSNISLNNSLKHSNLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKP--- 65
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + +LI VP ++ E +A + F +N +L +R+
Sbjct: 66 -LLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 117
>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
youngae ATCC 29220]
Length = 429
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSMAAQAVEQVVEKGQSLSNVLPAMQQ-------------KVADKDKALLQELCFGALRT 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + + + ++ G +L+ +P ++E V A
Sbjct: 55 LSQLEWMIQQLMERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRRQEE 131
>gi|192360951|ref|YP_001984033.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
japonicus Ueda107]
gi|190687116|gb|ACE84794.1| ribosomal RNA small subunit methyltransferase B [Cellvibrio
japonicus Ueda107]
Length = 432
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q L QI S + ++ D + + GV
Sbjct: 5 RAAATQVLAQILRQQGSLSSLLPAM-------------SVKIAEQDRPLLQQLCFGVCRY 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ S L + D+ L + +P I E V + D
Sbjct: 52 YPQLQAYTSLLLDKPLRAKDSDVQAL---LLLGLYQLIHTRIPDHAAIGETVEVTRDIKK 108
Query: 140 GDEPKFINAVLDKVSRKEEI 159
K +N VL + R ++
Sbjct: 109 AWATKLVNGVLRQFQRDQQT 128
>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase B [Enterobacter sp. 638]
gi|224493252|sp|A4WF97|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
Length = 428
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 3/128 (2%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ + + I E + ++ ++ D + + GV+ + LIS +
Sbjct: 6 LRSMAASAIEKVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLPQQEWLISKLM 65
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + + + ++ G +L+ +P ++E V A IN VL
Sbjct: 66 SRPMTGKQ--RTIHYLIMVGFYQLLHTR-IPPHAALAETVEGAVVIKRPQLKGLINGVLR 122
Query: 152 KVSRKEEI 159
+ R++E
Sbjct: 123 QFQRQQEE 130
>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
Length = 441
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + K + +
Sbjct: 23 SYSNISLNNSLKHSNLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKP--- 79
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + +LI VP ++ E +A + F +N +L +R+
Sbjct: 80 -LLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 131
>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
Length = 453
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + K + +
Sbjct: 35 SYSNISLNNSLKHSNLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKP--- 91
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + +LI VP ++ E +A + F +N +L +R+
Sbjct: 92 -LLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLVNGILRSFTRR 143
>gi|126695346|ref|YP_001090232.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9301]
gi|126542389|gb|ABO16631.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9301]
Length = 205
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
S +I + T D + S E I +++ + ID I +
Sbjct: 85 KKSLIKIETVMNTLSITLDFPKLIVSSGQIDIREDVNQRICNIINNLKSIDSDIDQAMDG 144
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR +++ + PV V E V +A+ + KFIN VL ++
Sbjct: 145 -WRLKRLPRIDRDILRLAYVDINFL-NTPVAVACDEAVNLANKYSDLQGRKFINGVLRRL 202
Query: 154 S 154
Sbjct: 203 Q 203
>gi|313124092|ref|YP_004034351.1| tRNA and rRNA cytosine-c5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280655|gb|ADQ61374.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 438
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 52/146 (35%), Gaps = 17/146 (11%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
+ AR A+ + ++I++ +Y + + + +++G
Sbjct: 2 KTNARTVAL----------ATLMKVINQ-GSYSNISLNHALKAAKLPGEESRLATNLVYG 50
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ + +++ + + + + + +L ++ VP ++ E +A
Sbjct: 51 TIQYQLYLEYQLKDLVKARLR----EPYIKPLLLMSAYQIFFLDKVPNRAVLDEANKLAK 106
Query: 136 DFFYGDEPKF--INAVLDKVSRKEEI 159
+ + +N +L + R+ E+
Sbjct: 107 AYGRPKSSGYRLVNGILHSLLRRGEV 132
>gi|224826197|ref|ZP_03699300.1| sun protein [Lutiella nitroferrum 2002]
gi|224601834|gb|EEG08014.1| sun protein [Lutiella nitroferrum 2002]
Length = 416
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + I +GV+ ++ L + + L +L + +L
Sbjct: 33 PDLTPAERGALQDIGYGVLRHLAEWRRVLRQLLPKPLP----EPQLERVLIVALHQLEYT 88
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ V ++E V +A G +NAVL R+ + ++ +
Sbjct: 89 RAAQYAV-VNEAVTLAGRLARGRFKGLVNAVLRNYLRQRDELKAAVAA 135
>gi|283455658|ref|YP_003360222.1| N utilization substance protein [Bifidobacterium dentium Bd1]
gi|283102292|gb|ADB09398.1| nusB N utilization substance protein [Bifidobacterium dentium Bd1]
Length = 86
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ + W R+ ++ +ILR V E++ VP V I E + +A D P FI
Sbjct: 1 MLDEHSTGWKVKRMGVVDRNILRIAVWEIMFNDDVPNMVAIDEALGLAKTLCDDDSPAFI 60
Query: 147 NAVLDKVS 154
+ +L VS
Sbjct: 61 HGLLSAVS 68
>gi|167031103|ref|YP_001666334.1| sun protein [Pseudomonas putida GB-1]
gi|166857591|gb|ABY95998.1| sun protein [Pseudomonas putida GB-1]
Length = 436
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLVGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P I E V A +NAVL + R+ E
Sbjct: 88 R-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEE 127
>gi|16752038|ref|NP_445404.1| transcription antitermination protein NusB [Chlamydophila
pneumoniae AR39]
gi|7189778|gb|AAF38655.1| N utilization substance protein B, putative [Chlamydophila
pneumoniae AR39]
Length = 163
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 53/146 (36%), Gaps = 12/146 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R +Q LY +D+ + ++ + + + V LE
Sbjct: 27 KMREIILQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILE---------- 76
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K LI + SF LD++ ++LR + E + ++I+E + + F
Sbjct: 77 --KSQELDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKF 134
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSG 163
Y + FI A+L+ + + +
Sbjct: 135 SYSEACPFIQAILNDIFTDSSLNENS 160
>gi|188535245|ref|YP_001909042.1| 16S rRNA methyltransferase B [Erwinia tasmaniensis Et1/99]
gi|224493254|sp|B2VK95|RSMB_ERWT9 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|188030287|emb|CAO98176.1| rRNA methylase Sun [Erwinia tasmaniensis Et1/99]
Length = 429
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 45/123 (36%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I E + ++ + D + + +GV+ ++ +I ++ +
Sbjct: 12 AQTIEKVVEQGQSLSNVLPAAQKSVGDKDAALLQELCYGVLRTLPQLEWVIGRLMSRPMT 71
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ + ++ G+ +L+ +P ++E V A IN VL + R+
Sbjct: 72 GKQRAVHF--LIMVGLYQLMFTR-IPAHAALAETVEGAVALKRPQLKGLINGVLRQFQRQ 128
Query: 157 EEI 159
++
Sbjct: 129 QDE 131
>gi|223994911|ref|XP_002287139.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976255|gb|EED94582.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1014
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q +K K + + AR A+ AL + + T + D +
Sbjct: 498 QPKQKSTKKKNVQPTARSIAINALATSAASNSGAHVNAAAFATQQLEQDEHY---NEMEA 554
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS-RLDMILCSILRAGVLELIECHSVP 122
D + R+++ V R ID ++ SC+ + + ++ + LR GV +L+ P
Sbjct: 555 RDRAFARLLVATVERRLGQIDGVLGSCIEKYPPKKGKHSHLIQATLRTGVAQLLFLD-TP 613
Query: 123 VEVIISEYVCIAHDFFY----------GDEPKFINAVLDKVS 154
E V + + KF+N V K+S
Sbjct: 614 PFAANKETVQVLRMHHHLSKTSTYPVPEPMVKFVNGVFRKLS 655
>gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative
[Rhodobacterales bacterium HTCC2150]
gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative
[Rhodobacterales bacterium HTCC2150]
Length = 423
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 21/144 (14%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AAV+ + ++ T++ S + D + +
Sbjct: 13 ARRAAVRLIDEVLENQRPLTDLTSNFRA--------------LPAADKARAMRLAMTTLR 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
D ++ L + +ILR V E+ + V + V +
Sbjct: 59 NVGRADQVLIPYLR-----KPPLGTVMNILRLAVTEICHEGAQDYAV-VDSAVAMTRKLR 112
Query: 139 YGD-EPKFINAVLDKVSRKEEIKR 161
+NAVL KV+R +
Sbjct: 113 NSSHFAGLVNAVLRKVARDGQAAW 136
>gi|58337594|ref|YP_194179.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|58254911|gb|AAV43148.1| rRNA methylase [Lactobacillus acidophilus NCFM]
Length = 455
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + +
Sbjct: 35 SYSNISLNNSLKNSDLAIADQNLATRIVYGTIQYRIFLEYQL----NGLIKTKLTEKYIK 90
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + ++I VP I+ E +A F + +N +L R+
Sbjct: 91 PLLLMSLYQIIFLDKVPNRAILDEANKLAKKFGKHHSSGYRIVNGILRSFIRR 143
>gi|307297435|ref|ZP_07577241.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
gi|306916695|gb|EFN47077.1| NusB/RsmB/TIM44 [Thermotogales bacterium mesG1.Ag.4.2]
Length = 334
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+Q L D G Y ++R S D + II+G +
Sbjct: 4 ARSIALQTLSFFDANG---------YISFRKLDI----ALSTLSSQDRSFCMNIIYGCLR 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
++ ID +S LT+ + + LR G +++ S+P + V +
Sbjct: 51 KRVSIDFELSRFLTKPSKL---PHAVLNALRIGAFQILYMKSIPEYAALKSSVDM---IG 104
Query: 139 YGDEPKFINAVLDKVSRKEEIKR 161
+ +NAVL K+ + +R
Sbjct: 105 VKEFKGLVNAVLRKLINEGPAER 127
>gi|317049808|ref|YP_004117456.1| sun protein [Pantoea sp. At-9b]
gi|316951425|gb|ADU70900.1| sun protein [Pantoea sp. At-9b]
Length = 428
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A Q + ++ G S + I+ + D + +
Sbjct: 1 MKKNTNLRSLAAQLIERVVDKGESLSAILP-------------GAQKSLSDKDGALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GVM ++ LIS + + + +L ++ G+ +L+ VP ++E V
Sbjct: 48 CFGVMRTLPQLEALISKLM--ERPLTGKQRVLHYLIMVGLYQLLYTR-VPPHAALAETVA 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A + +N VL + R++E
Sbjct: 105 GAEVLKRANLKGLLNGVLRQFQRQQEA 131
>gi|157412347|ref|YP_001483213.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9215]
gi|157386922|gb|ABV49627.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9215]
Length = 208
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
S T+I + T D + S E I +++ + ID I +
Sbjct: 85 KKSLTKIETVMNTLSLTLDFPKLIVSSGQIDIREDVNQRICNIINNLKSIDSDIDQVMDG 144
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR +++ + P+ V E V +A+ + +FIN VL ++
Sbjct: 145 -WRLKRLPRIDRDILRLAYVDINFL-NTPIAVACDEAVNLANKYSDLQGRRFINGVLRRL 202
Query: 154 S 154
Sbjct: 203 Q 203
>gi|317051327|ref|YP_004112443.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
gi|316946411|gb|ADU65887.1| NusB/RsmB/TIM44 [Desulfurispirillum indicum S5]
Length = 133
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 16/144 (11%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ R R A++ Y + I S E + +F + E+
Sbjct: 1 MIPVPTRRNQRENALKLNYALQIFSGSFDEPHIQRTASQFGMEV------------TEFT 48
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
R ++ + LI + + + + ++ G+ EL P + +I+E
Sbjct: 49 RELVQISLQANPACGQLIE---SLAKNDDMIAHLDRILMIQGMCELS-MKHSPAQTVINE 104
Query: 130 YVCIAHDFFYGDEPKFINAVLDKV 153
Y+ +A + + +F+N V+++
Sbjct: 105 YIELAKLYGAENSFRFVNVVMNQY 128
>gi|227484654|ref|ZP_03914970.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
lactolyticus ATCC 51172]
gi|227237374|gb|EEI87389.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
lactolyticus ATCC 51172]
Length = 428
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 5/131 (3%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ + I Y +++ +L ++GV++ K +ID +I
Sbjct: 1 MNDLAIIFNILRRVIYEDEKSSDMINSYAAKASNLSLITKTVYGVLENKIYIDYMIRKLS 60
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
++ + IL G+ + + + + V + + F+NA+L
Sbjct: 61 DV--RLKKIHKHVLLILEIGIYNIHFLETKDY-ATVDKLVDLTKE-KNKRSTGFVNAILR 116
Query: 152 KVSR-KEEIKR 161
R ++EI +
Sbjct: 117 SFIRDEKEIAK 127
>gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
Length = 495
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 2/135 (1%)
Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
+ + + D + D + R++ ID ++ ++
Sbjct: 25 RQWTYRLLEGWRTEQQLIRDQLQLFRQDQITSDTHQGAGWAERAIIRQRTIDRVLREAVS 84
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
+ L ++LR G EL+ ISE V +A + + F+N VL
Sbjct: 85 RAR--ENVQNELWTLLRMGAAELLFGPRDAQYAAISETVELARWVGHSEWTGFLNGVLRG 142
Query: 153 VSRKEEIKRSGCVSA 167
V R + S V
Sbjct: 143 VQRMLSEEESDTVGK 157
>gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 441
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPPH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|213621077|ref|ZP_03373860.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 180
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + GV+ ++ LI+ ++ + + + ++ G +L+
Sbjct: 2 QKVADKDKALLQELCFGVLRTLSQLEWLINKLMSRPMTGKQ--RTVHYLIMVGFYQLLYT 59
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP ++E V A IN VL + R++E
Sbjct: 60 R-VPPHAALAETVEGAVSIKRPQLKGLINGVLRQFQRQQET 99
>gi|33860569|ref|NP_892130.1| transcription antitermination protein NusB [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33633511|emb|CAE18468.1| Antitermination protein NusB [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 209
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E I +++ + ID I + W RL + ILR +++ PV V
Sbjct: 118 REDVNHRILSIINNLKSIDSEIDEVMDR-WRLKRLPRVDRDILRLAYVDIHFLD-TPVAV 175
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E V +A+ + K IN VL ++ R
Sbjct: 176 ACDEAVNLANKYCDTQGRKMINGVLRRLQR 205
>gi|309775471|ref|ZP_07670473.1| N utilization substance protein B [Erysipelotrichaceae bacterium
3_1_53]
gi|308916767|gb|EFP62505.1| N utilization substance protein B [Erysipelotrichaceae bacterium
3_1_53]
Length = 81
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ I+ L + W+F RL + +IL EL + P ++I E V +A +
Sbjct: 8 YRDVYIDKINEALRQDWTFDRLGFVEQAILLMAACELD-LETAPKAIVIDEAVTLAKKYC 66
Query: 139 YGDEPKFINAVLDKV 153
+ + IN VLD++
Sbjct: 67 DDETYRLINGVLDRL 81
>gi|302848840|ref|XP_002955951.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
gi|300258677|gb|EFJ42911.1| hypothetical protein VOLCADRAFT_42105 [Volvox carteri f.
nagariensis]
Length = 426
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ GV ++ +D ++++ + + ++ + +LR GV EL E P
Sbjct: 2 DQRLVKELVAGVTRLRRRLDFVVANLTQQTP--ADMESGVRQVLRLGVYELTERRLAPYA 59
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
++E+V +A F+N VL +R+ E
Sbjct: 60 --LNEHVQLAKVVSGPGAGSFVNGVLRSAARQVEA 92
>gi|443991|emb|CAA54369.1| fmu [Escherichia coli K-12]
Length = 238
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ R A QA+ Q+ G S + I+ + D + +
Sbjct: 1 MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV+ +D LI+ + + + + ++ G+ +L+ +P ++E V
Sbjct: 48 CFGVLRTLSQLDWLINKLMARPMTGKQ--RTVHYLIMVGLYQLLYTR-IPPHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 105 RRIAIKRPQLKGLINGVLRQFQRQQEE 131
>gi|25028274|ref|NP_738328.1| hypothetical protein CE1718 [Corynebacterium efficiens YS-314]
gi|259507332|ref|ZP_05750232.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
gi|23493558|dbj|BAC18528.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259165043|gb|EEW49597.1| RNA methyltransferase Sun [Corynebacterium efficiens YS-314]
Length = 490
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + L + + + Y L + D + I +G +
Sbjct: 54 KPREIAYEVL-----------DRVRTGDAYANLVLPRLLTKQKLDTRDAGFATEITYGTL 102
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+D +ISS +D + +LR G +++ + V +
Sbjct: 103 RNLGLLDAVISS--AANRPVKDIDPEVLDVLRIGAYQVLFTRVED-HAAVDTTVKMVGGL 159
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
+ F NAV+ ++R + + +
Sbjct: 160 KKFNATGFANAVMRTITRTPAEQWLDKLEPEGE 192
>gi|257784669|ref|YP_003179886.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
gi|257473176|gb|ACV51295.1| NusB/RsmB/TIM44 [Atopobium parvulum DSM 20469]
Length = 463
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 17/153 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A QA ++ + + E S D + + G
Sbjct: 7 ARKVAYQAFFECRRNNLCVRDYLR-----------ESKDFSELSAQDKAFATRLALGATL 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
K +D + + L + R V E++ + IS+ V +
Sbjct: 56 TKGKLDEALKNHLKSGIHLEP---KVQDAFRIAVFEVLYLETRRDAA-ISQGVELVKS-V 110
Query: 139 YGDEPKFINAVLDKVSR-KEEIKRSGCVSAITQ 170
NAVL K+S + + R+ ++
Sbjct: 111 SKRSSGLANAVLRKISEHEANLARAKDPHTPSE 143
>gi|297588339|ref|ZP_06946982.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
gi|297573712|gb|EFH92433.1| probable rRNA methylase [Finegoldia magna ATCC 53516]
Length = 423
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D+ + + + ++ + ID +IS C + ++LD I+ ILR
Sbjct: 22 SELLKTYDYGDLDKRDIAYIKRCVFTEIENRFFIDYVISKCSDLE--LNKLDKIVLEILR 79
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR-KEEIKRSGCVSAI 168
E++ + V + E V +A++ + + ++NAVL +V R + + G
Sbjct: 80 MATTEILFMKTADYAV-VDEAVELANNLTHYKD--YVNAVLREVCRINLDEEDLGDEIKF 136
Query: 169 T 169
+
Sbjct: 137 S 137
>gi|224073118|ref|XP_002303980.1| predicted protein [Populus trichocarpa]
gi|222841412|gb|EEE78959.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/199 (17%), Positives = 60/199 (30%), Gaps = 50/199 (25%)
Query: 17 GIARLAAVQALYQIDIIGCST-------------------------------------TE 39
AR A+ +Y + G TE
Sbjct: 15 RAARELALLIIYAACLEGSDPIRLFEKRMNARREPGYEFDKASLLEYNHMSFGGPPVTTE 74
Query: 40 IISEYETYRFCADTELDVESV---------YLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+ E + + + E +E+ Y + L + R ++ V+D+ L+I
Sbjct: 75 TVEEADELQLSDEKESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDSHVLVIDKV 134
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
W IL + + I +++I+E V +A F G P+ IN L
Sbjct: 135 SPPNWKNEPAGRILEFCILHMAMSEITVLGTRHQIVINEAVDLAKRFCDGAGPRIINGCL 194
Query: 151 DKVSRKEEIKRSGCVSAIT 169
+ SG A T
Sbjct: 195 RTFLKDL----SGASVAQT 209
>gi|330898595|gb|EGH30014.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 226
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 23 DRGLTQDLAFGTARWQPRLSGLAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 79
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL V R E
Sbjct: 80 AAIGETVGCADKLKKPWAKGLLNAVLRNVQRDGEA 114
>gi|109896353|ref|YP_659608.1| sun protein [Pseudoalteromonas atlantica T6c]
gi|109698634|gb|ABG38554.1| 16S rRNA m(5)C-967 methyltransferase [Pseudoalteromonas atlantica
T6c]
Length = 437
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 18/150 (12%)
Query: 10 LKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ S R R A + L+QI G S E + + + D
Sbjct: 1 MSQSKGRYQQNLRADAARVLFQILEQGMSARECLP-------------AAQQDHNEKDKA 47
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
W + + +GV+ + + L + ++ ++ G +L V +
Sbjct: 48 WLQEMTYGVLRQLPLLQH--WLRLLLDKPLKKNVKVVEHLIMLGFYQLAFSR-VSTHAAV 104
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
SE V +NAVL R++
Sbjct: 105 SECVNACAPLNAIATKGLVNAVLRNFIRQD 134
>gi|262383321|ref|ZP_06076457.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294219|gb|EEY82151.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 308
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLH-----VDLEWFRVIIHGVMDRKQHIDLLIS 88
+ + + + + L D + + + + + I
Sbjct: 172 NDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERID 231
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ W R+ + I++ + E++ ++P+ V ++EY+ A + FIN
Sbjct: 232 KHMKN-WETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFING 290
Query: 149 VLDKVS 154
+LD +
Sbjct: 291 ILDSIV 296
>gi|256827223|ref|YP_003151182.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
gi|256583366|gb|ACU94500.1| tRNA/rRNA cytosine-C5-methylase [Cryptobacterium curtum DSM 15641]
Length = 500
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 16/149 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR AV+ G E + + +S D + RV++ GV
Sbjct: 5 SCARRLAVEI-------GRDARE----RKAFASDLLDARLGKSGLNAADRAFTRVLVLGV 53
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +D +I CL + L LR E+I + V + + V +A
Sbjct: 54 VATVGTLDEVIGRCLDRAGDV---GLQLRDALRVSTYEIIFL-NKDAYVAVDQGVELA-A 108
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
F + NAVL ++ + G
Sbjct: 109 FVQPRARRLANAVLRRIMAARKSFPFGDP 137
>gi|269468281|gb|EEZ79965.1| ribosomal RNA small subunit methyltransferase B [uncultured SUP05
cluster bacterium]
Length = 423
Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R A+ A+ + + S + + Y D + ++
Sbjct: 5 NKSNTRAVALDAICSVVLDKRSLSSFV-------------------YPDQDDALAKSLVF 45
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G + ++ +++ S + D+ + ++ G +++ V + I E V
Sbjct: 46 GTIRFYHQLNDIVTDL--LNHSLEKEDLDIHCLMLLGAYQILYSK-VAIHASIFETVDTL 102
Query: 135 HDFFYGDEPKFINAVLDKVSRKEE 158
+ +NA+L ++ R ++
Sbjct: 103 NFLDKTWAKGLVNAILRQIDRDKD 126
>gi|294638022|ref|ZP_06716282.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
gi|291088814|gb|EFE21375.1| ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
ATCC 23685]
Length = 430
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L + G S + ++ D + + G +
Sbjct: 9 RAIAARTLSAVLDQGQSLSSVLP-------------SAAQSLSEKDRALLQELCFGTLRV 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + + + + L +L G+ +L+ +P ++E V A
Sbjct: 56 LPQLEWILQQLMAKALTGKQRP--LHYLLMVGLYQLVYTR-IPPHAALAETVDGATALKR 112
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 113 PQLKGLINGVLRQFQRQQEA 132
>gi|332304407|ref|YP_004432258.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332171736|gb|AEE20990.1| sun protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 437
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 18/154 (11%)
Query: 10 LKLSHRRGIA--RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+ + R R A + L+QI G S E + + + + D
Sbjct: 1 MSRTKGRYQQNLRADAARVLFQILEQGMSARECLP-------------NAQQDHNEKDKA 47
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
W + + +GV+ + + L + I+ ++ G +L V +
Sbjct: 48 WLQEMTYGVLRQLPLLQH--WLRLLLDKPLKKNVKIVEHLIMLGFYQLAFSR-VSTHAAV 104
Query: 128 SEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
SE V +NAVL R+E
Sbjct: 105 SECVNACAPLNAVATKGLVNAVLRNFIRQEMANE 138
>gi|254526109|ref|ZP_05138161.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
9202]
gi|221537533|gb|EEE39986.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
9202]
Length = 208
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
S T+I + T D + S E I +++ + ID I +
Sbjct: 85 KKSLTKIETVMNTLSLTLDFPKLIVSSGQIDIREDVNQRICNIINNLKSIDSDIDQVMDG 144
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR +++ + P+ V E V +A+ + +FIN VL ++
Sbjct: 145 -WRLKRLPRIDRDILRLAYVDINFL-NTPIAVACDEAVNLANKYSDLQGRRFINGVLRRL 202
Query: 154 S 154
Sbjct: 203 Q 203
>gi|124024721|ref|YP_001013837.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. NATL1A]
gi|123959789|gb|ABM74572.1| Antitermination protein NusB [Prochlorococcus marinus str. NATL1A]
Length = 208
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
E + V++++ ID + S + E W RL I ILR ++LI+ +
Sbjct: 109 QKEIRELAVRRVDLVIEKQDEIDHTLDSVM-EGWRLKRLPRIDRDILRLAWVDLIDF-NT 166
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P+ V +E V +A+ + + IN VL K+
Sbjct: 167 PMAVTCNEAVNLANRYSDVQGRRMINGVLRKLQ 199
>gi|255014272|ref|ZP_05286398.1| putative N utilization substance protein [Bacteroides sp. 2_1_7]
gi|256841510|ref|ZP_05547017.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|301309371|ref|ZP_07215313.1| NusB family protein [Bacteroides sp. 20_3]
gi|256737353|gb|EEU50680.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|300832460|gb|EFK63088.1| NusB family protein [Bacteroides sp. 20_3]
Length = 308
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLH-----VDLEWFRVIIHGVMDRKQHIDLLIS 88
+ + + + + L D + + + + + I
Sbjct: 172 NDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERID 231
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ W R+ + I++ + E++ ++P+ V ++EY+ A + FIN
Sbjct: 232 KHMKN-WETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFING 290
Query: 149 VLDKVS 154
+LD +
Sbjct: 291 ILDSIV 296
>gi|33862283|ref|NP_893843.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9313]
gi|33640396|emb|CAE20185.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9313]
Length = 222
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ V++++ ID I + + E W SRL I ILR V++L
Sbjct: 124 QEQIRLGALERVRLVIEQRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTAL-QT 181
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V +E V +AH + + IN VL ++
Sbjct: 182 PFAVACNEAVELAHRYSDDQGRRMINGVLRRL 213
>gi|319897839|ref|YP_004136036.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Haemophilus
influenzae F3031]
gi|317433345|emb|CBY81723.1| 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent
[Haemophilus influenzae F3031]
Length = 451
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|300854445|ref|YP_003779429.1| putative rRNA subunit cytosine-methyltransferase [Clostridium
ljungdahlii DSM 13528]
gi|300434560|gb|ADK14327.1| predicted rRNA subunit cytosine-methyltransferase [Clostridium
ljungdahlii DSM 13528]
Length = 443
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 14/140 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV+ L ++ + ++++ Y + I++G +
Sbjct: 4 ARSTAVEILNEVLGSNAYSNKVLNTYLNKNNLNKKDK-----------ALVTEIVYGTLK 52
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID ++ + S ++++ + +ILR + +L +P +++E V ++
Sbjct: 53 YMYTIDTILDDFIKS--SLKKMNIDIVNILRISIYQLRYLDKIPEFAVVNEAVELSKKKS 110
Query: 139 YGDEPKFINAVLDKVSRKEE 158
G +N VL R ++
Sbjct: 111 KGLSKL-VNGVLRNYLRNKD 129
>gi|260583337|ref|ZP_05851110.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
gi|260093608|gb|EEW77523.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae NT127]
Length = 451
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|116074285|ref|ZP_01471547.1| transcription antitermination protein NusB [Synechococcus sp.
RS9916]
gi|116069590|gb|EAU75342.1| transcription antitermination protein NusB [Synechococcus sp.
RS9916]
Length = 213
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ VM+++ ID + + E W SRL I ILR V++ P V +
Sbjct: 120 AMRRVTLVMEQRSSIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDFTSLK-TPSAVACN 177
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A+ + + IN VL ++
Sbjct: 178 EAVELANRYSDDQGRRMINGVLRRLQ 203
>gi|309751781|gb|ADO81765.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2866]
Length = 450
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|301169342|emb|CBW28941.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae 10810]
Length = 451
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|190893964|ref|YP_001980506.1| RNA methyltransferase - sun protein [Rhizobium etli CIAT 652]
gi|190699243|gb|ACE93328.1| probable RNA methyltransferase - sun protein [Rhizobium etli CIAT
652]
Length = 464
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 51/165 (30%), Gaps = 10/165 (6%)
Query: 1 MTIQDNKKDL---KLSHRRGIARLAAVQ-ALYQIDIIGCSTTEIISEYE--TYRFCADTE 54
M KK K S R R A V+ L ++ +
Sbjct: 1 MNSDGTKKPFRKQKPSSDRPAGRSAPVKPGLQARAAAAKILAAVVDRKLPLDGALDHEHG 60
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
D R I++ + ID I+S + L +L G +
Sbjct: 61 NPAYKALGESDRALVRAILNTTLRHLPRIDAAIASL--LESPLPEGARALHHVLSIGAAQ 118
Query: 115 LIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
++ VP + V A+ K +NAVL ++ R+++
Sbjct: 119 ILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKD 162
>gi|329122539|ref|ZP_08251122.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
gi|327473144|gb|EGF18568.1| RNA methyltransferase Sun [Haemophilus aegyptius ATCC 11116]
Length = 451
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKR--VVEKP 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|150008472|ref|YP_001303215.1| putative N utilization substance protein [Parabacteroides
distasonis ATCC 8503]
gi|298376259|ref|ZP_06986215.1| NusB family protein [Bacteroides sp. 3_1_19]
gi|149936896|gb|ABR43593.1| putative N utilization substance protein [Parabacteroides
distasonis ATCC 8503]
gi|298267296|gb|EFI08953.1| NusB family protein [Bacteroides sp. 3_1_19]
Length = 308
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLH-----VDLEWFRVIIHGVMDRKQHIDLLIS 88
+ + + + + L D + + + + + I
Sbjct: 172 NDDIEIVETFALKTIKKFEEKKGSKQALLPMFKDLEDKAFAIKLFRQSLLKGKEYRERID 231
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ W R+ + I++ + E++ ++P+ V ++EY+ A + FIN
Sbjct: 232 KHMKN-WETERIANMDLIIMQVALAEILSFPTIPINVTLNEYIDAAKYYSTPKSGTFING 290
Query: 149 VLDKVS 154
+LD +
Sbjct: 291 ILDSIV 296
>gi|238898791|ref|YP_002924473.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466551|gb|ACQ68325.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 429
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q + Q+ G S + ++ E + + + D + + G +
Sbjct: 8 RAIAAQIISQVLDKGRSLSVVLPEVQNH-------------VPYKDKALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + +T + +L +L G+ +LI +P I+SE V A Y
Sbjct: 55 LPRLEHCVKHLMTR--PLNAKKRLLHFLLMVGLYQLIYTR-IPPHAILSETVKAAAVLKY 111
Query: 140 GDEPKFINAVLDKVSRKEE 158
INA+L + R++E
Sbjct: 112 PQFKGLINAILREFERRKE 130
>gi|145635940|ref|ZP_01791626.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
gi|145266799|gb|EDK06817.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittAA]
Length = 451
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|308047743|ref|YP_003911309.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
9799]
gi|307629933|gb|ADN74235.1| 16S rRNA m(5)C-967 methyltransferase [Ferrimonas balearica DSM
9799]
Length = 441
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ + D I +GVM + +D + C + S I+
Sbjct: 22 HSLSQALPKAQSKLRDARDKALLAEIAYGVMRQLPQLDTQLRRC--LQKPLSGKKRIIHG 79
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+L AG+ +L +++E V + +N VL + R + ++
Sbjct: 80 LLLAGLYQLKHTRVGS-HAVVAESVNACREIGAPGMTGLVNGVLRALDRDMDALQAEQFD 138
Query: 167 AIT 169
A +
Sbjct: 139 APS 141
>gi|300718674|ref|YP_003743477.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
gi|299064510|emb|CAX61630.1| 16S rRNA methyltransferase B [Erwinia billingiae Eb661]
Length = 429
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A Q + ++ G S + ++ + D + +
Sbjct: 1 MKKNTNLRSIAAQTIEKVVEQGQSLSNVLP-------------AAQKSVAEKDAALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+GV+ ++ +I + + + + ++ G+ +LI +P ++E V
Sbjct: 48 CYGVLRTLPQLEWIIGQLMERPMTGKQ--RTIHFLVMVGLYQLIFTR-IPAHAALAETVE 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A IN VL + RK++
Sbjct: 105 GASSLKRQQFKGLINGVLRQFQRKQDE 131
>gi|218460752|ref|ZP_03500843.1| RNA methyltransferase - sun protein [Rhizobium etli Kim 5]
Length = 466
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + ID I+S + L
Sbjct: 53 LDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASL--LESPLPEGARAL 110
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE--IKR 161
+L G +++ VP + V A+ K +NAVL ++ R++E +
Sbjct: 111 HHVLAIGAAQILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEEVLAE 169
Query: 162 SGCVSA 167
G V+
Sbjct: 170 IGKVAP 175
>gi|229846677|ref|ZP_04466785.1| sun protein [Haemophilus influenzae 7P49H1]
gi|229810770|gb|EEP46488.1| sun protein [Haemophilus influenzae 7P49H1]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|145631966|ref|ZP_01787719.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
gi|144982380|gb|EDJ89957.1| methionyl-tRNA formyltransferase [Haemophilus influenzae R3021]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|3288668|dbj|BAA31226.1| Fmu [Vibrio alginolyticus]
Length = 211
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA LY + G S + + + D + I +G +
Sbjct: 4 RAAAANVLYLVVDKGHSLSSALP-------------AAQQTVRPRDHALLQEICYGALRY 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + ++ G+ +L +P + E V +
Sbjct: 51 LPRLE--MIANQLMDKPLKGKQRVFHHLILVGIYQLSFMR-IPAHAAVGETVEGTKELKG 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
INAVL R +E
Sbjct: 108 PRLRGLINAVLRNYQRNQEE 127
>gi|209883490|ref|YP_002287347.1| SUN protein [Oligotropha carboxidovorans OM5]
gi|209871686|gb|ACI91482.1| SUN protein [Oligotropha carboxidovorans OM5]
Length = 446
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + + + + + + D R ++ V+
Sbjct: 16 AARRIAADIIDGVLHKRRTLDDQLEGAAQHPAL--------KSLSDRDRALMRRLVATVL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R+ + L+S L S L G +++ VP + V +
Sbjct: 68 RRRGTLAYLLSRLLDRGVP--SDAPRAQSALMIGAAQILWMD-VPDHAAVDLSVRLVQAD 124
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + +R+
Sbjct: 125 RRAAKYAGLVNAVLRRCARE 144
>gi|16272567|ref|NP_438784.1| sun protein [Haemophilus influenzae Rd KW20]
gi|260581533|ref|ZP_05849340.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
gi|1169716|sp|P44788|RSMB_HAEIN RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|1573620|gb|AAC22284.1| sun protein (sun) [Haemophilus influenzae Rd KW20]
gi|260091807|gb|EEW75763.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
influenzae RdAW]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|309973883|gb|ADO97084.1| 16S rRNA m5C967 methyltransferase [Haemophilus influenzae R2846]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|229845581|ref|ZP_04465708.1| sun protein [Haemophilus influenzae 6P18H1]
gi|229811516|gb|EEP47218.1| sun protein [Haemophilus influenzae 6P18H1]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|145637960|ref|ZP_01793600.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
gi|145268851|gb|EDK08814.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittHH]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|91975197|ref|YP_567856.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
gi|91681653|gb|ABE37955.1| Fmu (Sun) [Rhodopseudomonas palustris BisB5]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + E + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLQKRRTLDEQLEGPAAH--------PGLKTLPDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R ++ L++ L S L G +++ VP + V +
Sbjct: 68 RRLGTLEHLLARMLDRGVPTD--APRAKSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+NAVL + +R+ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQ 146
>gi|71736115|ref|YP_272333.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71556668|gb|AAZ35879.1| sun protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326680|gb|EFW82725.1| sun protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320331346|gb|EFW87289.1| sun protein [Pseudomonas syringae pv. glycinea str. race 4]
gi|330881831|gb|EGH15980.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 448
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V AH +NAVL R E
Sbjct: 93 AAIGETVGCAHKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|145629884|ref|ZP_01785676.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
gi|144977738|gb|EDJ87685.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.1-21]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|291280368|ref|YP_003497203.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
gi|290755070|dbj|BAI81447.1| tRNA/rRNA methyltransferase [Deferribacter desulfuricans SSM1]
Length = 389
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
EL + + +++R I I +++S L ++ + + L G
Sbjct: 25 ELKEDFFHDSPYRKFYRKIYFETFKHLGFIQYILTSYLKKETPIESI-----AALTLGTA 79
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+++ +P ++E V + G + +NAVL +++ +E
Sbjct: 80 QILFLSDIPEYAAVNESVNLVK----GKQKSLVNAVLRRIASNKEA 121
>gi|319775433|ref|YP_004137921.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
gi|317450024|emb|CBY86238.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Haemophilus
influenzae F3047]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKR--VVEKP 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|312113148|ref|YP_004010744.1| sun protein [Rhodomicrobium vannielii ATCC 17100]
gi|311218277|gb|ADP69645.1| sun protein [Rhodomicrobium vannielii ATCC 17100]
Length = 425
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 48/151 (31%), Gaps = 16/151 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV L + S E F + D + D + R I +
Sbjct: 2 ARRLAVFLLKSVLHDHQSFDEA--------FAGSSARDAFAAMESRDRAFARAIATIALR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-F 137
R ++ +++ + + +IL AG +L P I V A
Sbjct: 54 RLGQVEDMLARF--LEKPLAADAFEARAILIAGATQLAFMDVAP-HAAIGLAVEQAKASR 110
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
F INAVL +V ++ +S
Sbjct: 111 FSRHLGGLINAVLRRV----NENKAAILSEQ 137
>gi|163744097|ref|ZP_02151463.1| ribosomal RNA small subunit methyltransferase B, putative
[Phaeobacter gallaeciensis 2.10]
gi|161382644|gb|EDQ07047.1| ribosomal RNA small subunit methyltransferase B, putative
[Phaeobacter gallaeciensis 2.10]
Length = 443
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 21/156 (13%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
++ ++S+ AR A+ L Q+ G +E Y A +L E
Sbjct: 19 QEPRMSNA-TQARRRAIHLLDQVLGEGKLLSEC------YAAGALDKLPAEE------RA 65
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVII 127
+ + + + D ++ L + + + LR G +EL + ++
Sbjct: 66 RTQRLATDTLRNLERADRILQKHLKKATPL-----TVHNALRIGTVELCQ--GGAAHGVV 118
Query: 128 SEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+E V I A +G +NAVL KV+ + + +
Sbjct: 119 NEMVDIIARHRRHGKLKGLVNAVLRKVAEQGPTEWA 154
>gi|145639370|ref|ZP_01794975.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
gi|145271417|gb|EDK11329.1| methionyl-tRNA formyltransferase [Haemophilus influenzae PittII]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|92115829|ref|YP_575558.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
gi|91798723|gb|ABE61098.1| Fmu (Sun) [Nitrobacter hamburgensis X14]
Length = 450
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + E + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLHKHRTLDEQLEGAAAH--------PGLKALADRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + ++S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGHVLSRLLDRGIPTD--APRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+NAVL + +R+ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQ 146
>gi|227328919|ref|ZP_03832943.1| 16S rRNA methyltransferase B [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 429
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 18/149 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + + Q+ G S + ++ ++ D + + G++
Sbjct: 8 RSIAAKVVGQVLDQGQSLSALLPVHQR-------------EVSDKDRALLQELCFGLLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + L ++ G+ +L +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAK--PLTGKQRTLHYLIMVGIYQLQYTR-IPPHAALAETVEGAVTLKK 111
Query: 140 GDEPKFINAVLDKVSRKEE--IKRSGCVS 166
IN VL + R++E I+R S
Sbjct: 112 PQLKGLINGVLRQFQRQQEELIQREATHS 140
>gi|148826743|ref|YP_001291496.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
gi|148716903|gb|ABQ99113.1| potassium transporter peripheral membrane component [Haemophilus
influenzae PittEE]
Length = 451
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|313791967|gb|EFS40068.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL110PA1]
gi|327453314|gb|EGE99968.1| putative ribosomal RNA small subunit methyltransferase B
[Propionibacterium acnes HL092PA1]
Length = 458
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 17/150 (11%)
Query: 8 KDLKLSHRRGIA---RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
++ +R A R A AL ++ G Y A + +
Sbjct: 1 MTQRVHQKRRKADPARRPAYSALLAVETHG-----------AYANLALADHLRAAKLTGR 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + ++ G D +I + + ++L + +LR +++ VP
Sbjct: 50 DAAFATELVDGTSRGTGTWDRIIEA--ASCRAPAKLQPGVRVVLRMAAHQILAMR-VPTR 106
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ V +A +NA+ ++S
Sbjct: 107 AAVASSVDLAGQVIGERVTGLVNAISRRIS 136
>gi|297198310|ref|ZP_06915707.1| ribosomal RNA small subunit methyltransferase B [Streptomyces
sviceus ATCC 29083]
gi|297147058|gb|EDY59597.2| ribosomal RNA small subunit methyltransferase B [Streptomyces
sviceus ATCC 29083]
Length = 399
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
M R+ D +I+ C+ +D + +L G +L+ +P +S V +A
Sbjct: 1 MRRQGTYDAIIAECVDR--PLREVDPPVLDVLSLGAHQLLGTR-IPTHAAVSASVELARV 57
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
KF+NAVL K+++ + V+
Sbjct: 58 VLGDGRAKFVNAVLRKIAQDDLDGWIAKVAPP 89
>gi|218509188|ref|ZP_03507066.1| probable RNA methyltransferase - sun protein [Rhizobium etli Brasil
5]
Length = 250
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + ID I+S + L
Sbjct: 53 LDGALDHEHGNPAYKALGESDRALVRAILNTTLRHLPRIDAAIASL--LESPLPEGARAL 110
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI--KR 161
+L G +++ VP + V A+ K +NAVL ++ R+++
Sbjct: 111 HHVLSIGAAQILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKDAVLAE 169
Query: 162 SGCVSA 167
G V+
Sbjct: 170 IGKVAP 175
>gi|68249187|ref|YP_248299.1| SUN protein [Haemophilus influenzae 86-028NP]
gi|68057386|gb|AAX87639.1| SUN protein [Haemophilus influenzae 86-028NP]
Length = 450
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQALDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|87123339|ref|ZP_01079190.1| Antitermination protein NusB [Synechococcus sp. RS9917]
gi|86169059|gb|EAQ70315.1| Antitermination protein NusB [Synechococcus sp. RS9917]
Length = 219
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ R + V++++ ID + + E W SRL I ILR V++L
Sbjct: 120 QDQVRDDARRRVALVLEQRSAIDARLDGVM-EGWRLSRLPRIDRDILRLAVVDLTAL-HT 177
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P V +E V +AH + + IN VL ++ +
Sbjct: 178 PAAVACNEAVELAHRYSDDQGRRMINGVLRRLQQ 211
>gi|298484625|ref|ZP_07002729.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 441
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + + + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSAMAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCAEKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|238921411|ref|YP_002934926.1| 16S rRNA methyltransferase B [Edwardsiella ictaluri 93-146]
gi|238870980|gb|ACR70691.1| ribosomal RNA small subunit methyltransferase B, putative
[Edwardsiella ictaluri 93-146]
Length = 430
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 46/140 (32%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L + G S + ++ D + + G +
Sbjct: 9 RAIAARTLSAVLDQGQSLSSVLP-------------SAAQSLSEKDRALLQELCFGTLRV 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + + + L +L G+ +L+ +P ++E V A
Sbjct: 56 LPQLEWILQQLMAKV--LTGKQRTLHYLLMVGLYQLVYTR-IPPHAALAETVDGATALKR 112
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 113 PQLKGLINGVLRQFQRQQEA 132
>gi|330970341|gb|EGH70407.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 441
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVDALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|239993908|ref|ZP_04714432.1| 16S rRNA m(5)C 967 methyltransferase [Alteromonas macleodii ATCC
27126]
Length = 439
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
+YQI G S+ E + + D W + + GVM R +
Sbjct: 19 VIYQILEQGKSSRECLERVQRRHNA-------------KDNAWIQEMSLGVMRRLPLLQH 65
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+ S L ++ ++ G+ +L V + E V A
Sbjct: 66 WLRSLLDR--PLKGNKKVIEHLILLGLYQLNFSR-VSNHAAVGETVAAASYLNAAGLKGL 122
Query: 146 INAVLDKVSRKEEIKRS 162
+NAVL R+ +
Sbjct: 123 VNAVLRNFQRENLADKP 139
>gi|90421553|ref|YP_529923.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
gi|90103567|gb|ABD85604.1| Fmu (Sun) [Rhodopseudomonas palustris BisB18]
Length = 450
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLHKHRTLDDQLEGAAAH--------PGLKTLSDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + ++S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGHVLSRMLDRGLPTD--APRAQSALLIGAAQILWME-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+NAVL + +R+ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQ 146
>gi|331017689|gb|EGH97745.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 416
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 441
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|302186426|ref|ZP_07263099.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
syringae 642]
Length = 441
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|302130426|ref|ZP_07256416.1| sun protein [Pseudomonas syringae pv. tomato NCPPB 1108]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|289627007|ref|ZP_06459961.1| sun protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289647928|ref|ZP_06479271.1| sun protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|330867899|gb|EGH02608.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 441
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|257485586|ref|ZP_05639627.1| sun protein [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|330985725|gb|EGH83828.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331011875|gb|EGH91931.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|213968427|ref|ZP_03396570.1| sun protein [Pseudomonas syringae pv. tomato T1]
gi|301384285|ref|ZP_07232703.1| sun protein [Pseudomonas syringae pv. tomato Max13]
gi|302060153|ref|ZP_07251694.1| sun protein [Pseudomonas syringae pv. tomato K40]
gi|213926715|gb|EEB60267.1| sun protein [Pseudomonas syringae pv. tomato T1]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|66043288|ref|YP_233129.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
syringae B728a]
gi|63253995|gb|AAY35091.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
syringae B728a]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|46396868|sp|Q88B41|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 448
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|157372746|ref|YP_001480735.1| 16S rRNA methyltransferase B [Serratia proteamaculans 568]
gi|224493268|sp|A8GKG7|RSMB_SERP5 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|157324510|gb|ABV43607.1| sun protein [Serratia proteamaculans 568]
Length = 429
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A A+ Q+ G S + ++ + D + + G +
Sbjct: 8 RSIAAIAIGQVLDQGQSLSTVLPSLQ-------------KTISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + + + L +L G+ +L+ +P +++E V A
Sbjct: 55 LPQLEWCIQQLMAKPMTGKQ--RTLHYLLMVGLYQLLYTR-IPAHAVLAETVEGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKEEI 159
IN VL + R++E
Sbjct: 112 PQLKGLINGVLRQFQRQQEE 131
>gi|33239461|ref|NP_874403.1| transcription antitermination protein NusB [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33236986|gb|AAP99055.1| Transcription termination factor, NusB [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 211
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ V+++ Q I+ + + + E W RL I ILR ++L
Sbjct: 113 QEQIRNEAMKRVDLVINKYQIINDALDNVM-EGWRLKRLPRIDQDILRLAYIDL-YNLKT 170
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P+ V +E V +A+ + K IN +L ++
Sbjct: 171 PIAVSCNEAVNLANRYSDQQGRKMINGILRRLQ 203
>gi|297620390|ref|YP_003708527.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
chondrophila WSU 86-1044]
gi|297375691|gb|ADI37521.1| putative ribosomal RNA small subunit methyltransferase B [Waddlia
chondrophila WSU 86-1044]
Length = 421
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA AL + E++ + + + D R + +G
Sbjct: 10 REAAYLALLSS-----------AREESFLIDSLAQWQAKCRPSIQDYHLAREVAYGTTRM 58
Query: 80 ---KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
H+ L ++ + R G+ + +P+ I+ E + IA
Sbjct: 59 ALALDHLALQLADKKKLALKL-----REKILFRMGLYQFHYMDKIPLYAIVDETIKIAKI 113
Query: 137 FFYGDEPKFINAVLDKV 153
+ KF+NA L KV
Sbjct: 114 HCHESFVKFLNACLRKV 130
>gi|159185402|ref|NP_355752.2| Sun protein [Agrobacterium tumefaciens str. C58]
gi|159140651|gb|AAK88537.2| Sun protein [Agrobacterium tumefaciens str. C58]
Length = 461
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 31/186 (16%)
Query: 1 MTIQDNKKD-----LKLSHRRG--------------IARLAAVQALYQIDIIGCSTTEII 41
MT K K +H RG AR+AA + L + S ++
Sbjct: 1 MTSDIQSKPARSRKPKPAHARGREDGPSSFEDKPGLAARIAATRILAAVLEKKTSMDGML 60
Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
++ V D R +++ + I+ +S + +
Sbjct: 61 D--------SENGNPVYRALSLADRALVRAVVNSALRHLPRIETALS--MLLDGPLPQGA 110
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIK 160
L +L G +++ VP + V AH K +NAVL ++ R++
Sbjct: 111 RSLHHVLVVGAAQMLYLD-VPDHSAVDLAVEQAHRDPRNRRFVKLVNAVLRRLGREKAEI 169
Query: 161 RSGCVS 166
Sbjct: 170 EKAIAD 175
>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxidans DMS010]
gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxydans DMS010]
Length = 406
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 3/104 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ +++ + +GV+ + L K F D + ++ G+ +L +
Sbjct: 6 PQLNDNERSFYQQLCYGVLRLHPTLIFL--GNQLLKKPFKNKDADIAALFLTGLYQLRDL 63
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
P ISE V A +NA L R+ +
Sbjct: 64 R-TPSHAAISETVNAAKKLGKQWATGLLNACLRNYQRQHTELEA 106
>gi|332976014|gb|EGK12885.1| rRNA (cytosine-C(5)-)-methyltransferase [Psychrobacter sp.
1501(2011)]
Length = 530
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 20/161 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + N + + R+A + L I + + +
Sbjct: 1 MSSKPNSSSQNKTQNK-NVRVAVINTLLAIQQGQS--------------LSSLLDPLLNS 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + ++ + + L+ S ++ + + ++ G+ +L+ +
Sbjct: 46 LKGEDKGFAHALLLTTLRHWYATERLLDSLSDNPID----EIEVRTTIQVGITQLLYL-N 100
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V I E V +NA+L KV++ R
Sbjct: 101 VADHAAIHETVEAVKHIDLARASGLVNAILRKVAKNPNKFR 141
>gi|239618307|ref|YP_002941629.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
gi|239507138|gb|ACR80625.1| NusB/RsmB/TIM44 [Kosmotoga olearia TBF 19.5.1]
Length = 336
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 6/123 (4%)
Query: 33 IGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLT 92
+ + + S + ++ ++ + ++ ID +++ L
Sbjct: 5 RQKALETLAFFDQNGYIPFRKVEIAISTLSSIGRRFYMNLVMETLRKRIQIDYILNQFLK 64
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
+ + + LR GV +L SVP I V + K +NAVL K
Sbjct: 65 KPEKL---PAPVMNALRLGVTQLFYMDSVPEFAAIHSSVELLKAKS---FKKLVNAVLRK 118
Query: 153 VSR 155
+S+
Sbjct: 119 ISK 121
>gi|330443798|ref|YP_004376784.1| hypothetical protein G5S_0047 [Chlamydophila pecorum E58]
gi|328806908|gb|AEB41081.1| conserved hypothetical protein [Chlamydophila pecorum E58]
Length = 154
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R +Q LY + + + ++ A + + Y
Sbjct: 7 PRQKMREIVLQMLYALGVDPSAEEGLVPLLMAETAVAQKHVFLALRYSKQ---------- 56
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+++ +D LIS + SF L+++ +ILR + E + +P ++I+E +
Sbjct: 57 -VLEKSSELDALISQTVKTT-SFENLNLMEKNILRLTLFEYLYGGPIPSSILIAEASRLI 114
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
F Y + F+ AVL+ + R
Sbjct: 115 KKFSYLEARAFVQAVLNDIFR 135
>gi|213158779|ref|YP_002321200.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB0057]
gi|301345911|ref|ZP_07226652.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB056]
gi|301596687|ref|ZP_07241695.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB059]
gi|213057939|gb|ACJ42841.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB0057]
Length = 434
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 19/155 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ +NA+L + +R+ E G A
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFEQGLHQA 142
>gi|169794225|ref|YP_001712018.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii AYE]
gi|215481783|ref|YP_002323965.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB307-0294]
gi|301510400|ref|ZP_07235637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB058]
gi|332850303|ref|ZP_08432637.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013150]
gi|332871589|ref|ZP_08440083.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013113]
gi|169147152|emb|CAM85011.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii AYE]
gi|213987633|gb|ACJ57932.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB307-0294]
gi|332730761|gb|EGJ62071.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013150]
gi|332731443|gb|EGJ62735.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6013113]
Length = 434
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 19/155 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ +NA+L + +R+ E G A
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFEQGLHQA 142
>gi|78778394|ref|YP_396506.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9312]
gi|78711893|gb|ABB49070.1| antitermination protein NusB [Prochlorococcus marinus str. MIT
9312]
Length = 208
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
S T+I + T D + S + I ++ ID I +
Sbjct: 85 KKSLTKIETVMNTLSITLDFPKLIVSSGQVDIRDDVNQRISKTINNLTIIDSDIDQAMDG 144
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR +++ + PV V E V +A+ + K IN +L ++
Sbjct: 145 -WKLKRLPRIDRDILRLAYVDINFL-NTPVAVACDEAVNLANKYSDMQGRKLINGILRRL 202
Query: 154 S 154
Sbjct: 203 Q 203
>gi|320334556|ref|YP_004171267.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
gi|319755845|gb|ADV67602.1| NusB/RsmB/TIM44 [Deinococcus maricopensis DSM 21211]
Length = 420
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 1 MTIQDNKKDLKLSHRRGI--ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE 58
MT + R AR AV+ L + E
Sbjct: 1 MTDAPTRAP------RRANPARAVAVRVL------------ARVLGGAFAAPTLDEALAH 42
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D I++G + + + + L ++L AG E +
Sbjct: 43 ARLPARDAGLATHIVYGALRHAPTLLPALDALLKGSTPIKA-----RALLLAGAFEKLVL 97
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ P +SEYV +A D F P +NAVL +V
Sbjct: 98 GTAP-HAAVSEYVTLARDGFA--SPGLVNAVLRRV 129
>gi|171920577|ref|ZP_02931840.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|185179037|ref|ZP_02964782.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024190|ref|ZP_02996905.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518637|ref|ZP_03004078.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524479|ref|ZP_03004486.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867654|ref|ZP_03079656.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273709|ref|ZP_03206244.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|209554511|ref|YP_002284699.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225550715|ref|ZP_03771664.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225551022|ref|ZP_03771968.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|171903281|gb|EDT49570.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|184209018|gb|EDU06061.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188018832|gb|EDU56872.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997767|gb|EDU66864.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195659568|gb|EDX52948.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660711|gb|EDX53966.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198249737|gb|EDY74518.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|209542012|gb|ACI60241.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225378837|gb|EEH01202.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|225379869|gb|EEH02231.1| transcription antitermination factor NusB [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 127
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 16/135 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ Q +Y I + T + + L V L
Sbjct: 8 RVKLFQFVYHWLITKKNKTIALKSALVDFELDVSWLSVSEYILD---------------N 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + +I + + W+F RL + ++L + E + P ++II + + H++
Sbjct: 53 CEQLIKMIKPFINKDWTFERLSYVEQALLLSAYGEYLVLK-TPKKIIIDQTLITTHNYSN 111
Query: 140 GDEPKFINAVLDKVS 154
+ KFINA+LD++
Sbjct: 112 DESYKFINAILDQLL 126
>gi|124021724|ref|YP_001016031.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9303]
gi|123962010|gb|ABM76766.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9303]
Length = 211
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ V++++ ID I + + E W SRL I ILR V++L
Sbjct: 113 QEQIRLGALERVRLVIEKRNSIDASIDAVM-EGWRLSRLPRIDRDILRLAVVDLTAL-QT 170
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V +E V +AH + + IN VL ++
Sbjct: 171 PSAVACNEAVELAHRYSDDQGRRMINGVLRRL 202
>gi|251788002|ref|YP_003002723.1| 16S rRNA methyltransferase B [Dickeya zeae Ech1591]
gi|247536623|gb|ACT05244.1| sun protein [Dickeya zeae Ech1591]
Length = 431
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 16/134 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A L Q+ G S ++++ ++ D + I GV+
Sbjct: 8 RSIAATVLVQVVEQGQSLSQLLPVFQR-------------DISEKDRGLLQEICFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D + + + + +L +L G+ +LI +P ++E V A
Sbjct: 55 LPQLDWYLRQLMAK--PLTGKQKVLHYLLMVGIYQLIHTR-IPPHAALAETVNAAVTLKR 111
Query: 140 GDEPKFINAVLDKV 153
IN VL +
Sbjct: 112 PQLKGLINGVLRQF 125
>gi|325294195|ref|YP_004280059.1| SUN protein [Agrobacterium sp. H13-3]
gi|325062048|gb|ADY65739.1| SUN protein [Agrobacterium sp. H13-3]
Length = 461
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+AA + L + S ++ ++ V D R I++ +
Sbjct: 37 AARVAATRILAAVLEKKTSLDGMLD--------SENGNPVYRALSLADRALVRAIVNSAL 88
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
I+ +S + + L +L G +++ VP + V AH
Sbjct: 89 RHLPRIEAALS--MLLDGPLPQGARSLHHVLVVGAAQVLHLD-VPDHSAVDLAVEQAHRD 145
Query: 138 -FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
K +NAVL ++ R++
Sbjct: 146 PRNRRFAKLVNAVLRRLGREKAEIEKAIAD 175
>gi|20095066|ref|NP_614913.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888345|gb|AAM02843.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 448
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 15/135 (11%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
L AV+AL ++ G E + R +D+ ++
Sbjct: 5 LLAVKALVLVETRGMPIPEAVERTCRDR--------------PIDVRRSVQAFVYETIKR 50
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+++ + + ++ + ILR G LE+ + P V V IA
Sbjct: 51 RNLLDELVAAGSDAHPEDVRSPYVRQILRVGTLEMKIWRNPPPAVT-DCMVRIAKRLVGS 109
Query: 141 DEPKFINAVLDKVSR 155
F+NAVL V R
Sbjct: 110 KAGAFVNAVLRGVER 124
>gi|299133157|ref|ZP_07026352.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
gi|298593294|gb|EFI53494.1| Fmu (Sun) domain protein [Afipia sp. 1NLS2]
Length = 446
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + + + + + + V D R ++ V+
Sbjct: 16 AARRIAADIIDGVLHKRRTLDDQLEGPAAH--------PVLKTLSDRDRALMRRLVATVL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + L+S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGHLLSRLLDRGIP--SDAPRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQAD 124
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + +R+
Sbjct: 125 RRAAKYAGLVNAVLRRCARE 144
>gi|283852902|ref|ZP_06370163.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
gi|283571731|gb|EFC19730.1| NusB/RsmB/TIM44 [Desulfovibrio sp. FW1012B]
Length = 451
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D +++G + ID ++S L + + + +L V E++ C
Sbjct: 53 KGLDPRDRGLATELVYGYLRLCGRIDWMLSRFLK---KPEAVPLPVRRVLGLAVYEILYC 109
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP + V NAVL +V+
Sbjct: 110 SRVPAYASVDWAVSAVRRLSGKGLGGMANAVLRRVA 145
>gi|222150167|ref|YP_002551124.1| Sun protein [Agrobacterium vitis S4]
gi|221737149|gb|ACM38112.1| Sun protein [Agrobacterium vitis S4]
Length = 493
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 21/166 (12%)
Query: 4 QDNKKDLKLSHRRGI---------ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
QD + K R AR+AA + L + S ++ D
Sbjct: 30 QDGQSRQKSDRPRRQVHDDKPGLEARMAASRLLAAVIDRKTSLDGMMDG--------DHG 81
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ D R I++ + I+ +++ L + I+ A +
Sbjct: 82 NPAYAALSEADRGLVRAILNTSLRFLPRIEAMLARLLDAPLPDGARALYHSLIVAAAQMV 141
Query: 115 LIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
VP + V A+ K +NAVL ++ R+++
Sbjct: 142 Y---LDVPDHSAVDLAVEQANRDPRSRRFAKLVNAVLRRLGREKQA 184
>gi|75674355|ref|YP_316776.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
Nb-255]
gi|74419225|gb|ABA03424.1| tRNA and rRNA cytosine-C5-methylase [Nitrobacter winogradskyi
Nb-255]
Length = 450
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + E + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLHKRRTLDEQLEGPTAH--------PGLKALADRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + L+S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGHLLSRLLDRGIPTD--APRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+NAVL + +R+ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQ 146
>gi|262089741|gb|ACY24835.1| ribosomal RNA small subunit methyltransferase B [uncultured
organism]
Length = 430
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA Q L +I S + ++ ++ D + + G
Sbjct: 5 RAAAAQVLAKILQGQGSLSSLLP-------------TIQPQVAEQDRPLLQELCFGTCRY 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + + + + D+ L + +P + E V +
Sbjct: 52 QPQLSAYVECLVDKPLRAKDSDIQALL---LLGLYQLLHTRIPDHAALGETVEVTRFLKK 108
Query: 140 GDEPKFINAVLDKVSRKE 157
+N VL K R +
Sbjct: 109 PWATSLVNGVLRKFQRDK 126
>gi|110004340|emb|CAK98678.1| putative ribosomal rna small subunit methyltransferase protein
[Spiroplasma citri]
Length = 423
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 15/142 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L +++ + E + ++ D I++G +
Sbjct: 2 QAREVAWNIL--------WKIFAKNKFSNHLLSNIVEQND--NFIDQDKTLIYRIVYGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
K +++ + + + + + L +L + + +P I++E V I+
Sbjct: 52 KNKLYLEYIANQFIES----KKTNQKLQILLWMSIYQFRFLDRIPNYAIVNEAVNISKS- 106
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
FIN L K+ ++
Sbjct: 107 VSPKYAGFINTTLKKIFDSKDE 128
>gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180]
gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180]
Length = 449
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + +++G + + L+ + + D L +++ G+ +L P
Sbjct: 50 PADQALVQEMVYGALRLLPRLRLI--AGRLLERPLKPRDGDLQALILVGLYQLGFMK-TP 106
Query: 123 VEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+S V +NA+L + R+ E
Sbjct: 107 SHAAVSATVEATRLLGKPRMAGLVNALLRRFQREHEA 143
>gi|237728623|ref|ZP_04559104.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
gi|226909245|gb|EEH95163.1| 16S rRNA m5C967 methyltransferase [Citrobacter sp. 30_2]
Length = 439
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 45/128 (35%), Gaps = 3/128 (2%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ + + E + ++ ++ D + + GV+ ++ +I +
Sbjct: 17 LRSMTAQAVEQVVEKGQSLSNVLPAMQQKVADKDKALLQELCFGVLRTLSQLEWMIQQLM 76
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + + ++ G +L+ +P ++E V A IN VL
Sbjct: 77 ERPMTGKQ--RTVHYLIMVGFYQLLHTR-IPAHAALAETVEGAVVIKRPQLKGLINGVLR 133
Query: 152 KVSRKEEI 159
+ R+++
Sbjct: 134 QFQRRQDE 141
>gi|166713736|ref|ZP_02244943.1| Sun protein [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 437
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 12 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L G +L +P +S V
Sbjct: 60 RRRPAYDVALRQW--LERPLPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 116
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 117 GRPRQAGMVNAILRRAQRE 135
>gi|58580210|ref|YP_199226.1| hypothetical protein XOO0587 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58424804|gb|AAW73841.1| Sun protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 473
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 48 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 95
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L G +L +P +S V
Sbjct: 96 RRRPAYDVALRQW--LERPLPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 152
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 153 GRPRQAGMVNAILRRAQRE 171
>gi|84622205|ref|YP_449577.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188574935|ref|YP_001911864.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|84366145|dbj|BAE67303.1| Sun protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188519387|gb|ACD57332.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 437
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 12 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L G +L +P +S V
Sbjct: 60 RRRPAYDVALRQW--LERPLPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 116
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 117 GRPRQAGMVNAILRRAQRE 135
>gi|88811382|ref|ZP_01126637.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
gi|88791271|gb|EAR22383.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrococcus mobilis
Nb-231]
Length = 423
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + +GV+ ++ L+ + L ++ R ++L L + +P
Sbjct: 30 DRALCQELCYGVLRWHSRLEALVLNLLEQRP---RNRDRDLTLLLELGLYQLMYTQIPPH 86
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+S V A ++NAVL + R+
Sbjct: 87 AAVSATVDTARALGKSWAAGWVNAVLRRFQRER 119
>gi|159037486|ref|YP_001536739.1| Fmu (Sun) domain-containing protein [Salinispora arenicola CNS-205]
gi|157916321|gb|ABV97748.1| Fmu (Sun) domain protein [Salinispora arenicola CNS-205]
Length = 508
Score = 56.7 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 4/126 (3%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ Y + + + D + + +G + +D +++ +R+D +
Sbjct: 77 DAYANLVLPSILRDVGLVGRDAAFATELTYGTLRHLGTLDAILTD--AAGREVARIDPPV 134
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
LR G +L+ VP +S V + F NAVL +V+ ++
Sbjct: 135 RDALRLGAYQLLHTR-VPAHAAVSSTVDLVRS-VGPGATGFANAVLREVTGRDAEAWVAR 192
Query: 165 VSAITQ 170
++ +
Sbjct: 193 LAPPLE 198
>gi|325924335|ref|ZP_08185879.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
gardneri ATCC 19865]
gi|325545200|gb|EGD16510.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
gardneri ATCC 19865]
Length = 436
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLK------------AELAASLPGLSDPRDRALVEAICFAVL 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L AG +L +P +S V
Sbjct: 59 RRRPAYDVALRQW--LERPLPPRDAELKALLMAGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|144575303|gb|AAZ53536.2| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
Length = 216
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 72 NNKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 121
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 122 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 172
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 173 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 212
>gi|329847341|ref|ZP_08262369.1| nusB family protein [Asticcacaulis biprosthecum C19]
gi|328842404|gb|EGF91973.1| nusB family protein [Asticcacaulis biprosthecum C19]
Length = 457
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 40/176 (22%)
Query: 1 MTIQ-DNKKDLKLSHRRG----------------IARLAAVQALYQIDIIGCSTTEIISE 43
M +KK L+ S R ARLAA+ +I
Sbjct: 1 MNKPRPSKKPLQKSRPRAPRPEPERIVDDGDIGMNARLAAL--------------TLIDA 46
Query: 44 YETYRFCADTELDVESVYLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
R D + D + R + V+ R +D +I +
Sbjct: 47 ALEKRTGFDEAVTRSDFLSLNDSERGFARALAMLVLRRLGQLDYVIDKKTQ-----KAPN 101
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRK 156
+ ++LR G+ ++ VP +S V +A + INA+L V R+
Sbjct: 102 DGVWALLRIGLAQIGFM-QVPDFAAVSTTVKLAEREAHTRPFKGLINAILRSVIRE 156
>gi|212550794|ref|YP_002309111.1| transcription termination factor NusB [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549032|dbj|BAG83700.1| transcription termination factor NusB [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 305
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 61/138 (44%)
Query: 25 QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHID 84
+++Y D + +T ++ + ++ + E + ++ + + + + + +
Sbjct: 168 KSIYWNDDLEATTMLVLKTLKQFQNRSIAEPVLLPLFKDNTTQEYAIQLLRSSIIEAEEN 227
Query: 85 LLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK 144
+ + W R+ ++ I++ + EL ++P++V ++EY+ +A +
Sbjct: 228 SDLIDTQMKNWDKKRIALLDLIIMQMALAELNNFPAIPLKVTLNEYIDLARYYSTPKSTS 287
Query: 145 FINAVLDKVSRKEEIKRS 162
FIN +L + +I ++
Sbjct: 288 FINGILQAIVSILKINKN 305
>gi|104779336|ref|YP_605834.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase) [Pseudomonas entomophila L48]
gi|95108323|emb|CAK13017.1| Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase) [Pseudomonas entomophila L48]
Length = 436
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + +DL + + F D + ++L G+ +L
Sbjct: 30 DKVDERDRGLTQDLAFGTARWQPRLDL--LAAQLLQKPFKAADADVQALLLVGLYQLFYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P + E V A +NAVL + R+ E
Sbjct: 88 R-IPAHAALGETVGCADKLKKPWAKGLLNAVLRRAQREGEE 127
>gi|317967915|ref|ZP_07969305.1| sun protein [Synechococcus sp. CB0205]
Length = 441
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 44/145 (30%), Gaps = 14/145 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A Q L + Y A D + +G +
Sbjct: 9 ASRQVAWQVLQAVAAG------------AYADGALERELGRVSLSPQDRGLATELAYGAI 56
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+++ +D + R L +L G+ +L+ +P +S V +A
Sbjct: 57 RQRRLLDAWLDQLGKV--PAERQPPKLRWLLHLGLYQLLSSDRIPASAAVSTTVELAKRG 114
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162
+N +L R++E +
Sbjct: 115 GLSRLAPVVNGMLRAFLRRQEAGEA 139
>gi|294789034|ref|ZP_06754274.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
gi|294483136|gb|EFG30823.1| ribosomal RNA small subunit methyltransferase B [Simonsiella
muelleri ATCC 29453]
Length = 421
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 16/143 (11%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A Q L+ ++ + E+ D + I +G
Sbjct: 9 LATQTLFAVENGKNLSDELAHIIVQN-----------PELSPQDKGMLQDIAYGCQRFSG 57
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+ ++ L + L+ L + +L + P +++E V G
Sbjct: 58 SLKYMLGKLLNKPIDNKVLEHY----LLVALYQLNYTRNAP-HAVVNEAVSNIAKIGRGQ 112
Query: 142 EPKFINAVLDKVSRKEEIKRSGC 164
F NA+L + R+++ C
Sbjct: 113 YRSFANAILRRFLREQDGLNKAC 135
>gi|289667876|ref|ZP_06488951.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 436
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S + + + D I V+
Sbjct: 11 ASRLAAARVLTAVFEQGRSLKT------------ELAATLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L G +L +P +S V
Sbjct: 59 RRRPAYDVALRQW--LERPLPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|72080501|ref|YP_287559.1| hypothetical protein MHP7448_0162 [Mycoplasma hyopneumoniae 7448]
Length = 219
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 75 NNKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 124
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 125 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 175
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 176 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 215
>gi|238063929|ref|ZP_04608638.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
gi|237885740|gb|EEP74568.1| fmu domain-containing protein [Micromonospora sp. ATCC 39149]
Length = 507
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 15/151 (9%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q + + + Y L + D + + +G +
Sbjct: 62 RHVAYQVV-----------AAVHRDDAYANLVLPVLLRQEGLTGRDAAFATELTYGTLRH 110
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D +++ +R+D + LR G +L+ VP +S V +
Sbjct: 111 LGTLDAILTD--AAGRDVARIDPPVRDALRLGAYQLLHTR-VPAHAAVSSTVDLVRT-VG 166
Query: 140 GDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
F NAVL +V+ ++ ++ +
Sbjct: 167 IGATGFANAVLREVAGRDADAWVAKLAPAYE 197
>gi|302817774|ref|XP_002990562.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
gi|300141730|gb|EFJ08439.1| hypothetical protein SELMODRAFT_47116 [Selaginella moellendorffii]
Length = 196
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 51/185 (27%), Gaps = 44/185 (23%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVE------------------ 58
AR ++ LY + G E++ + R E ++
Sbjct: 12 RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLDQYDHDAKSGEPLYVSCES 71
Query: 59 ---------SVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92
+D II + ++ + ++ L
Sbjct: 72 EAKELEFQQEQQSEIDAALLTAHPCVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
W +L + + + IE ++I+E V +A F G P+ +N L
Sbjct: 132 STWKDESNGKLLETTIMHMAIAEIEVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLGN 191
Query: 153 VSRKE 157
R
Sbjct: 192 YFRSR 196
>gi|154494846|ref|ZP_02033851.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC
43184]
gi|154085396|gb|EDN84441.1| hypothetical protein PARMER_03890 [Parabacteroides merdae ATCC
43184]
Length = 308
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + + + I+ + W R+ + I++ + E++ ++P+
Sbjct: 207 EDQSFAIKLFRQSLMKGSEFRERINKHMKN-WETERIANMDLIIMQVALAEIMTFPTIPI 265
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
V ++EY+ A + FIN +LD V
Sbjct: 266 NVTLNEYIDTAKYYSTPKSGTFINGILDSVV 296
>gi|116788226|gb|ABK24800.1| unknown [Picea sitchensis]
Length = 324
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 46/184 (25%)
Query: 17 GIARLAAVQALYQIDIIGCST------------------TEIISEYETYRFCADTELDVE 58
AR A+ LY+ + G + + EY + T L E
Sbjct: 109 RAAREFALVVLYEACVEGSDPLRLFERRMNMKTAMSAQFDQTLLEYYDHMHFCGTPLYTE 168
Query: 59 SV----------------------------YLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+ Y L + I+ V++R ++
Sbjct: 169 TEEQARVLQMEDEKEALTEAAILAAPPKLVYNKFVLSMTKKILAAVVERWDEQASILDES 228
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ KW IL L + I +V+I+E + +A F G P+ IN L
Sbjct: 229 IPSKWKDESAGRILELCLMHIAMAEIVVLGTQYQVVINEAIDLAKRFCDGASPRIINGCL 288
Query: 151 DKVS 154
Sbjct: 289 RSFI 292
>gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
Length = 455
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 13/149 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L +++ G D L + +++G +
Sbjct: 12 ARGIAFDVLRRVEEGGAYA----------SRALDAALGAAGALDPREAGLATELVYGTLR 61
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R +D ++ + + LD LR G +L+ P + E V +A
Sbjct: 62 RALALDAALAPH--SRRPLAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVALAKAVD 118
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+G ++NAVL +SR + A
Sbjct: 119 HGRAAGYVNAVLRSLSRAARFPDPPALEA 147
>gi|332873408|ref|ZP_08441362.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6014059]
gi|332738471|gb|EGJ69344.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii 6014059]
Length = 434
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ E G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFEQG 138
>gi|193078768|gb|ABO13846.2| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii ATCC 17978]
Length = 434
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ E G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFEQG 138
>gi|291619144|ref|YP_003521886.1| RsmB [Pantoea ananatis LMG 20103]
gi|291154174|gb|ADD78758.1| RsmB [Pantoea ananatis LMG 20103]
Length = 433
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ S I + + D + I GV+ ++ LI +
Sbjct: 7 LRSLSAQLIERVVDKGESLNTALPAAQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLM 66
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + L ++ G+ +L+ VP ++E V A + IN VL
Sbjct: 67 --ERPLTGKQRTLHFLIMVGLYQLLYTR-VPAHAALAETVAGAEVLKRANLKGLINGVLR 123
Query: 152 KVSRKEEI 159
+ R++E
Sbjct: 124 QFQRQQEA 131
>gi|303233972|ref|ZP_07320621.1| putative ribosomal RNA small subunit methyltransferase B
[Finegoldia magna BVS033A4]
gi|302494897|gb|EFL54654.1| putative ribosomal RNA small subunit methyltransferase B
[Finegoldia magna BVS033A4]
Length = 423
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D+ + + + ++ + ID +IS C + +RLD I+ ILR
Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLE--INRLDKIVLEILR 79
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ + V + E V +A ++NAVL +V R
Sbjct: 80 MATTEILFMKTADYAV-VDEAVELASSI--TRYKDYVNAVLREVCR 122
>gi|219871972|ref|YP_002476347.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
gi|219692176|gb|ACL33399.1| ribosomal RNA small subunit methyltransferase B [Haemophilus
parasuis SH0165]
Length = 432
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R Q + Q+ G S + +I + +S DL W +
Sbjct: 2 KKHSTRAVTAQIILQVLDQGKSLSTLIP-------------EAQSQLDSKDLAWVQETTF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ ++ +I L + ++ +L G+ +L+ VP + E V
Sbjct: 49 GICRVLPRLEAIIK--LLVEIPLKNKTRLVHCLLLVGLYQLLYMR-VPPHAAVDEVVNAT 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
N VL + R++E
Sbjct: 106 KVLKLDSFRALTNGVLRRFLREQEA 130
>gi|300024959|ref|YP_003757570.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299526780|gb|ADJ25249.1| sun protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 468
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 15/138 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+AR AV AL+ + + ++ ++ R A D + R+I V+
Sbjct: 38 LARDVAVSALFSVLVEKRPFDDVFAKAAAARNLA-----------PRDRAFARLIATTVL 86
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
+ + ++ + L + + + P IS V
Sbjct: 87 RNRGSLQAVLRTYLEKPLPEHLGRLEQIL---LAAAAQLLLIKTPPHAAISLAVDQCRAD 143
Query: 137 FFYGDEPKFINAVLDKVS 154
+NAVL ++S
Sbjct: 144 RVGKRFGNLVNAVLRRLS 161
>gi|302380559|ref|ZP_07269024.1| putative ribosomal RNA small subunit methyltransferase B
[Finegoldia magna ACS-171-V-Col3]
gi|302311502|gb|EFK93518.1| putative ribosomal RNA small subunit methyltransferase B
[Finegoldia magna ACS-171-V-Col3]
Length = 423
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D+ + + + ++ + ID +IS C + +RLD I+ ILR
Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFIDYVISKCSDLE--INRLDKIVLEILR 79
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ + V + E V +A ++NAVL +V R
Sbjct: 80 MATTEILFMKTADYAV-VDEAVELASSI--TRYKDYVNAVLREVCR 122
>gi|145633871|ref|ZP_01789592.1| sun protein [Haemophilus influenzae 3655]
gi|144985243|gb|EDJ92086.1| sun protein [Haemophilus influenzae 3655]
Length = 166
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|327395473|dbj|BAK12895.1| ribosomal RNA small subunit methyltransferase B RsmB [Pantoea
ananatis AJ13355]
Length = 433
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 3/128 (2%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ S I + + D + I GV+ ++ LI +
Sbjct: 7 LRSLSAQLIERVVDKGESLNTALPAAQKKLSDKDAALVQEICFGVLRTLPQLEALIGKLM 66
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
+ + L ++ G+ +L+ VP ++E V A + IN VL
Sbjct: 67 --ERPLTGKQRTLHFLIMVGLYQLLYTR-VPAHAALAETVAGAEVLKRANLKGLINGVLR 123
Query: 152 KVSRKEEI 159
+ R++E
Sbjct: 124 QFQRQQEA 131
>gi|218262680|ref|ZP_03477038.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii
DSM 18315]
gi|218223231|gb|EEC95881.1| hypothetical protein PRABACTJOHN_02717 [Parabacteroides johnsonii
DSM 18315]
Length = 308
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + + + I+ + W R+ + I++ + E++ ++P+
Sbjct: 207 EDQSFAIKLFRQSLMKGSEFRERINKHMKN-WETERIANMDLIIMQVALAEIMTFPTIPI 265
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
V ++EY+ A + FIN +LD V
Sbjct: 266 NVTLNEYIDTAKYYSTPKSGTFINGILDSVV 296
>gi|150021390|ref|YP_001306744.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
gi|149793911|gb|ABR31359.1| NusB/RsmB/TIM44 [Thermosipho melanesiensis BI429]
Length = 416
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ +F+ +I GV+ +++++D +I+S + + +ILR G +L+ +
Sbjct: 33 EEKAFFKNLIFGVLRKQEYLDWVINS----LLKKKDIPPSIRTILRIGTYQLLFTNKPSY 88
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ ++E V + +NA+L K+S+
Sbjct: 89 SI-VNETVELVEKKS---FKGLVNAILRKISK 116
>gi|257455153|ref|ZP_05620391.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
aerosaccus SK60]
gi|257447486|gb|EEV22491.1| ribosomal RNA small subunit methyltransferase B [Enhydrobacter
aerosaccus SK60]
Length = 450
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 5/116 (4%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + + + D + ++ G + + ++
Sbjct: 18 LERIQQGESLSSLLDPLLNQVSEKDKGFAHELLLGTLRQ----WWALARIGESLIEHEVT 73
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
D + + L G+ +L+ P I E V G INA+L KV +
Sbjct: 74 DKGVWAALNIGLYQLLYMD-TPDYAAIGETVEAVKQLDKGYGAGLINAILRKVQKN 128
>gi|330500985|ref|YP_004377854.1| sun protein [Pseudomonas mendocina NK-01]
gi|328915271|gb|AEB56102.1| sun protein [Pseudomonas mendocina NK-01]
Length = 437
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
H D + + G + + + + + F D + ++L G+ +L+
Sbjct: 30 DKVEHHDRALAQDLAFGAARWQPRLQ--LLADKLLEKPFKAADKDVEALLVIGLYQLLHS 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P I E V A +NAVL + R+ E
Sbjct: 88 R-IPEHAAIGETVGCAGALKKPWAKGLLNAVLRRAQREHEA 127
>gi|145642283|ref|ZP_01797848.1| potassium transporter peripheral membrane component [Haemophilus
influenzae R3021]
gi|145273039|gb|EDK12920.1| potassium transporter peripheral membrane component [Haemophilus
influenzae 22.4-21]
Length = 276
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 3/123 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + +V+ DL + I GV ++ +I + +
Sbjct: 27 ANLILQVLDEGKSLSALIPEVQLSVKAQDLPLLQEICFGVCRVLPRLEQIIKRLVDK--P 84
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
I+ +L G+ +L+ VP + E V +NAVL + R+
Sbjct: 85 LKGKTRIVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKSLKSDSFRGLVNAVLRRFLRE 143
Query: 157 EEI 159
++
Sbjct: 144 QDE 146
>gi|330890235|gb|EGH22896.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. mori str.
301020]
Length = 448
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 93 AAIGETVGCAEKLKKTWAKGLLNAVLRNAQRDGEA 127
>gi|289664806|ref|ZP_06486387.1| hypothetical protein XcampvN_17488 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 436
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S + + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLKT------------ELAATLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + D L ++L G +L +P +S V
Sbjct: 59 RRRPAYDVALRQW--LERPLPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|183600721|ref|ZP_02962214.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
gi|188019701|gb|EDU57741.1| hypothetical protein PROSTU_04317 [Providencia stuartii ATCC 25827]
Length = 428
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A A+ Q+ G S + ++ E + D + I GV+
Sbjct: 8 RSIAAVAIGQVIDGGQSLSTVLPELQ-------------KNINEKDKSLLQEICFGVLRY 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + + + L ++ G+ +L+ +P ++E V A
Sbjct: 55 LPKLEWFVAQLM--EKPLTGKQRTLHYLIMVGIYQLLYTR-IPPHAALAETVNGAVALKR 111
Query: 140 GDEPKFINAVLDKVSRKE 157
IN VL R++
Sbjct: 112 PQLKGLINGVLRSFQRQQ 129
>gi|223041828|ref|ZP_03612018.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
gi|223017397|gb|EEF15818.1| Trk system potassium uptake protein TrkA [Actinobacillus minor 202]
Length = 432
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
++ AR A + Q+ G S +I + +S DL + I
Sbjct: 1 MKKKQNARAVAAHIILQVLDQGKSLATLIP-------------EAQSQVESKDLPLVQEI 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV ++ +I + ++ +L G+ +L+ VP + E V
Sbjct: 48 AFGVCRVLPRLENIIKQL--VEKPLKGKTRLVHCLLLVGLYQLLYMR-VPAHAAVDEVVN 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
N VL + R++E
Sbjct: 105 ATKSLKLDSFRALTNGVLRRFLREQET 131
>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
Length = 453
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + K + +
Sbjct: 35 SYSNISLNNSLKHSNLSIADQNLATNIVYGTIQYRLFLEYQLKGLVRTKLTEKYIKP--- 91
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + +LI VP ++ E +A + F N +L +R+
Sbjct: 92 -LLLMSLYQLIFLDKVPDRAVLDEANKLAKQYGKRHSAGFRLANGILRSFTRR 143
>gi|330466983|ref|YP_004404726.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328809954|gb|AEB44126.1| Fmu (Sun) domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 450
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ Y + E D + + +G + +D +++S R+D +
Sbjct: 19 DAYANLVLPSILREEGLFGRDAAFATELTYGTLRHSGTLDAILTS--AAGRDVQRIDPPV 76
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
LR G +L+ VP +S V + F NAVL +V+
Sbjct: 77 RDALRIGAYQLLHTR-VPAHAAVSSTVDLVRM-VGQGATGFANAVLREVA 124
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|119503584|ref|ZP_01625667.1| sun protein [marine gamma proteobacterium HTCC2080]
gi|119460646|gb|EAW41738.1| sun protein [marine gamma proteobacterium HTCC2080]
Length = 438
Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + +++G + ++ + L + L + +
Sbjct: 33 EPLSLENRPLVQELVYGTLREWPRLEGIALQLLRKPPRAK---DADVLCLILTGIHQLSG 89
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+VP + E V A IN L R++
Sbjct: 90 LNVPSHAAVGETVEAAKSLGKSWAAGLINGCLRNYQRQK 128
>gi|292493781|ref|YP_003529220.1| sun protein [Nitrosococcus halophilus Nc4]
gi|291582376|gb|ADE16833.1| sun protein [Nitrosococcus halophilus Nc4]
Length = 440
Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 17/147 (11%)
Query: 12 LSHRRGIA-RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
+ + R+ A L Q+ G S T + + D + +
Sbjct: 2 PTAPHSASTRVIAATVLAQVLGQGRSLTAALPPAVAH-------------LPDRDQAFTQ 48
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ +GV+ ++ L R + L L + +P +SE
Sbjct: 49 TLCYGVLRWLPRLEYL---AQKLLRKPLRARDVDLYSLLLLGLYQLTELGIPSHAALSET 105
Query: 131 VCIAHDFFYGDEPKFINAVLDKVSRKE 157
V A K INA+L R +
Sbjct: 106 VAAAESLGKPWAKKLINAILRAYLRNQ 132
>gi|21233175|ref|NP_639092.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|46396948|sp|Q8P4G1|RSMB_XANCP RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|21115024|gb|AAM43004.1| Sun protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
Length = 437
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D I V+ R+ D+ + + D L ++L AG +L +
Sbjct: 44 DPRDRALVEAICFAVLRRRPAYDVALRQW--LERPLPPRDAELKALLMAGFAQLDVL-QL 100
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P +S V + +NAVL + R+
Sbjct: 101 PAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135
>gi|329295652|ref|ZP_08252988.1| 16S rRNA methyltransferase B [Plautia stali symbiont]
Length = 428
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 16/147 (10%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R A Q + ++ G S + I+ + + D + +
Sbjct: 1 MKKATNLRSLAAQLIERVVDKGESLSAILP-------------AAQKTLANNDGALLQEL 47
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
GV ++ LI+ + + +L ++ G+ +L+ VP ++E V
Sbjct: 48 CFGVTRTLPQLEALINKLMAR--PLTGKQRVLHYLIMVGLYQLLYTR-VPPHAALAETVA 104
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEI 159
A + +N VL + R+++
Sbjct: 105 GAEALKRANLKGLLNGVLRQFQRQQDA 131
>gi|332991527|gb|AEF01582.1| 16S rRNA methyltransferase B [Alteromonas sp. SN2]
Length = 444
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
+YQI G S+ + + + D W + + GVM + +
Sbjct: 19 VIYQILEQGKSSRDCLERVQRRHH-------------PRDNAWIQEMSLGVMRKLPILQH 65
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+ L ++ ++ G+ +L + E V +
Sbjct: 66 WLRELLDR--PLKGNKKVIEHLILLGLYQLAFSRVSQ-HAAVGETVNASPYLGGTALKGL 122
Query: 146 INAVLDKVSRKEEIKRS 162
+NAVL R+E + +
Sbjct: 123 VNAVLRNFMRQELVNKP 139
>gi|66770115|ref|YP_244877.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
gi|66575447|gb|AAY50857.1| Sun protein [Xanthomonas campestris pv. campestris str. 8004]
Length = 437
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D I V+ R+ D+ + + D L ++L AG +L +
Sbjct: 44 DPRDRALVEAICFAVLRRRPAYDVALRQW--LERPLPPRDAELKALLMAGFAQLDVL-QL 100
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P +S V + +NAVL + R+
Sbjct: 101 PAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 135
>gi|254700459|ref|ZP_05162287.1| Sun [Brucella suis bv. 5 str. 513]
gi|261750960|ref|ZP_05994669.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
gi|261740713|gb|EEY28639.1| fmu domain-containing protein [Brucella suis bv. 5 str. 513]
Length = 465
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ V + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLDLPDHSV-VDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|227893309|ref|ZP_04011114.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
gi|227864889|gb|EEJ72310.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus ultunensis
DSM 16047]
Length = 455
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+Y + S D I++G + + ++ + + + +
Sbjct: 35 SYSNISLNNSFKNSNLSVADQNLATRIVYGTIQYRLFLEYQLKGLIRT----KLTERYIN 90
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF--INAVLDKVSRK 156
+L + ++I + VP ++ E +A F + +N +L R+
Sbjct: 91 PLLLMSLYQIIFLNKVPNRAVLDEANKLAKQFGRHHSSGYRIVNGILRSFIRR 143
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
Length = 450
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLQKRRMLDDQLEGPAAH--------PGLKTLPDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R ++ L++ L S L G +++ VP + V +
Sbjct: 68 RRLGTLEHLLARMLDRGVPTD--APRAKSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + +R+
Sbjct: 125 RRAAKYAGLVNAVLRRCARE 144
>gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
Length = 451
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D +++G + + + L + L + + IL E++ C
Sbjct: 51 PGLDPRDRGLATELVYGYLRLRGRMAFLCARFLKRP---DAVPAPVRRILELAAYEILFC 107
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
VP + V NAVL +++
Sbjct: 108 SKVPAYASVDWAVSAVRAKAGKGLSGMANAVLRRIA 143
>gi|210633282|ref|ZP_03297747.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
gi|210159200|gb|EEA90171.1| hypothetical protein COLSTE_01660 [Collinsella stercoris DSM 13279]
Length = 495
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 16/139 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + AL Q G +I + D D + + GV
Sbjct: 29 ARRATLDALMQAQESGRYVRDIFAH-----------GDQLGRLSSRDAAFALRLALGVTA 77
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ +D ++S L + S + LR E + P +V++S+ V +
Sbjct: 78 TEGCLDDALNSHLAKPGKVSA---RVRCCLRISAYEALYLD-TPADVVVSQGVELVRS-C 132
Query: 139 YGDEPKFINAVLDKVSRKE 157
NAVL +V
Sbjct: 133 AKSASGLANAVLRRVCENR 151
>gi|94985598|ref|YP_604962.1| NusB/RsmB/TIM44 [Deinococcus geothermalis DSM 11300]
gi|94555879|gb|ABF45793.1| rRNA methyltransferase, sun family protein [Deinococcus
geothermalis DSM 11300]
Length = 427
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 21/154 (13%)
Query: 12 LSHRR---GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
++ R AR AV+ L ++ ET+ A E+ D
Sbjct: 1 MTAPRPTFNPARALAVRVLTRVLAG-----------ETFAAPALDAALAEARLPARDAGL 49
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+++G + ++ ++ L + ++L AG E + P +S
Sbjct: 50 ATHLVYGTLRFAPMLEAALAPLLR-----EKTHSKTRALLLAGAFEKLVL-GTPPHAALS 103
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
EYV +A P +NAVL +V R E + +
Sbjct: 104 EYVNVARMARLAP-PGLVNAVLRRVERPAETEET 136
>gi|149920268|ref|ZP_01908739.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
gi|149818855|gb|EDM78295.1| hypothetical protein PPSIR1_08951 [Plesiocystis pacifica SIR-1]
Length = 169
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------LDVESVYLHVD 65
R R A+ + ++ G + + + T R + + + +
Sbjct: 10 SRARGRELALWLMCHLERRGEGSRAALELFWTERPEFEVDDDFLGVAGPQMRDIIEDSSA 69
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
W R + ++ +D I + +E+W R+D + ++LR +EL P V
Sbjct: 70 RRWARRLTEAYLEDAAAVDQAIGAA-SERWRIERMDRVDRNVLRLAAVELR-TQKTPRNV 127
Query: 126 IISEYVCIAHDFFYGDEPKFIN 147
+++E V +A + F+N
Sbjct: 128 VVAEAVRLAARYGSERSAAFVN 149
>gi|114799841|ref|YP_762041.1| putative ribosomal RNA small subunit methyltransferase B
[Hyphomonas neptunium ATCC 15444]
gi|114740015|gb|ABI78140.1| putative ribosomal RNA small subunit methyltransferase B
[Hyphomonas neptunium ATCC 15444]
Length = 423
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 6/112 (5%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D + R I + ID +S L+ S + +++RAG ++
Sbjct: 35 NNLDGSDRAFARAIASSALRHLGWIDRGVSPFLSR--PLSATGAEIRALIRAGAAQIWFM 92
Query: 119 HSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSGCVSAIT 169
VP +SE V A + F+NA L +V+ E + +S +
Sbjct: 93 D-VPHHAAVSETVEAARLWSPARSGGGFLNAALRRVTESESP--AATISPLA 141
>gi|323142778|ref|ZP_08077491.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
hippei YIT 12066]
gi|322417423|gb|EFY08044.1| ribosomal RNA small subunit methyltransferase B [Succinatimonas
hippei YIT 12066]
Length = 443
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+R AA + L ++ G S ++++ + D I+HG
Sbjct: 20 SQSRAAAAKILAGVE-TGLSLSDLMPRFTA-------------ELDLRDRALVSEIVHGT 65
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ ++ ++L S S + ++L + + +++ P +++ V
Sbjct: 66 LRHRRLLNL--SLHPLLDHKLSSKYREVNTLLLSAIYQIVFMR-TPPHAVVASTVGACAL 122
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + R+
Sbjct: 123 CKCQSFTGMVNAVLRRFLRE 142
>gi|319404848|emb|CBI78449.1| SUN-family protein [Bartonella rochalimae ATCC BAA-1498]
Length = 456
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + D R I+ + + I + +S L +L
Sbjct: 43 DNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQITVALSRF--LVRPLPAQAFSLHHLLH 100
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ +++ +P I V +A +NA+L +R+ I R +
Sbjct: 101 ISITQILYLD-IPDHAAIDLAVRVAKIDPRMPRFSGLVNAILRNFAREAPILRMQTPT 157
>gi|260168015|ref|ZP_05754826.1| sun protein [Brucella sp. F5/99]
gi|261757460|ref|ZP_06001169.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
gi|261737444|gb|EEY25440.1| RNA methyltransferase- sun protein [Brucella sp. F5/99]
Length = 465
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGFALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|228987008|ref|ZP_04147134.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157441|ref|ZP_04285519.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228626168|gb|EEK82917.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus ATCC
4342]
gi|228772786|gb|EEM21226.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 360
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|306841594|ref|ZP_07474291.1| Sun [Brucella sp. BO2]
gi|306288340|gb|EFM59703.1| Sun [Brucella sp. BO2]
Length = 464
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%)
Query: 3 IQDNKKDLKLSHRRG-------------IARLAAVQALYQIDIIGCSTTEIISEYETYRF 49
+ D K K +++ ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQSNNNTADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH-- 58
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
D R I+ + + I+ I+ L + L +L
Sbjct: 59 ------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLH 110
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 VAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 159
>gi|254719803|ref|ZP_05181614.1| Sun [Brucella sp. 83/13]
gi|265984821|ref|ZP_06097556.1| fmu domain-containing protein [Brucella sp. 83/13]
gi|306839499|ref|ZP_07472307.1| Sun [Brucella sp. NF 2653]
gi|264663413|gb|EEZ33674.1| fmu domain-containing protein [Brucella sp. 83/13]
gi|306405444|gb|EFM61715.1| Sun [Brucella sp. NF 2653]
Length = 464
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%)
Query: 3 IQDNKKDLKLSHRRG-------------IARLAAVQALYQIDIIGCSTTEIISEYETYRF 49
+ D K K +++ ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQSNNNTADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH-- 58
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
D R I+ + + I+ I+ L + L +L
Sbjct: 59 ------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLH 110
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 VAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 159
>gi|322515643|ref|ZP_08068621.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
gi|322118294|gb|EFX90577.1| RNA methyltransferase Sun [Actinobacillus ureae ATCC 25976]
Length = 435
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 16/146 (10%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ +++ R A Q + Q+ G S + ++ + ++ D+ +
Sbjct: 1 MKNKKQNTRAIAAQIILQVLDQGKSLSSLLP-------------EAQTQLDPKDVPLVQE 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
I G+ ++L+I + + ++ +L G+ +L+ VP + E V
Sbjct: 48 ITFGICRVLPRLELVIKQLVAK--PIKGKTRLVHCLLLVGLYQLLYMR-VPAHAAVDEVV 104
Query: 132 CIAHDFFYGDEPKFINAVLDKVSRKE 157
N VL + R++
Sbjct: 105 NATKVLKLDSFRALTNGVLRRFLREQ 130
>gi|261416620|ref|YP_003250303.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373076|gb|ACX75821.1| Fmu (Sun) domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302326268|gb|ADL25469.1| ribosomal RNA small subunit methyltransferase B [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 419
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
E +R + D + + + GV R +++ + S + S
Sbjct: 4 EREEAFRVLLLWQRDGSFIKESGLSPFAMELALGVCRRHLYLEYFVKSLTKKLPSLEA-- 61
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEE 158
IL G+ ++ VP I++ V +A + +NAVL R+ E
Sbjct: 62 ---RVILEMGLFQMFFMD-VPDYAAINDSVELAKSANLGESTARLVNAVLRTARRQGE 115
>gi|71893514|ref|YP_278960.1| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J]
Length = 199
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 55 NNKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 104
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 105 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 155
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 156 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 195
>gi|332139428|ref|YP_004425166.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549450|gb|AEA96168.1| 16S rRNA methyltransferase B [Alteromonas macleodii str. 'Deep
ecotype']
Length = 439
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 26 ALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
+YQI G S+ E + + D W + + GVM R +
Sbjct: 19 VIYQILEQGKSSRECLERVQRRHNA-------------RDNAWLQEMSLGVMRRLPLLQH 65
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+ + L ++ ++ G+ +L V + E V A
Sbjct: 66 WLRALLDR--PLKGNKKVIEHLILLGLYQLNFSR-VSNHAAVGETVAAASYLNAAGLKGL 122
Query: 146 INAVLDKVSRKEEIKRS 162
+NAVL R+ +
Sbjct: 123 VNAVLRNFQRENLADKP 139
>gi|256160512|ref|ZP_05458201.1| Sun [Brucella ceti M490/95/1]
gi|256255718|ref|ZP_05461254.1| Sun [Brucella ceti B1/94]
gi|261222929|ref|ZP_05937210.1| fmu domain-containing protein [Brucella ceti B1/94]
gi|265998888|ref|ZP_06111445.1| fmu domain-containing protein [Brucella ceti M490/95/1]
gi|260921513|gb|EEX88166.1| fmu domain-containing protein [Brucella ceti B1/94]
gi|262553577|gb|EEZ09346.1| fmu domain-containing protein [Brucella ceti M490/95/1]
Length = 465
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|254714655|ref|ZP_05176466.1| Sun [Brucella ceti M644/93/1]
gi|254717553|ref|ZP_05179364.1| Sun [Brucella ceti M13/05/1]
gi|261219386|ref|ZP_05933667.1| fmu domain-containing protein [Brucella ceti M13/05/1]
gi|261322448|ref|ZP_05961645.1| fmu domain-containing protein [Brucella ceti M644/93/1]
gi|260924475|gb|EEX91043.1| fmu domain-containing protein [Brucella ceti M13/05/1]
gi|261295138|gb|EEX98634.1| fmu domain-containing protein [Brucella ceti M644/93/1]
Length = 465
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|188993323|ref|YP_001905333.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
campestris pv. campestris str. B100]
gi|167735083|emb|CAP53295.1| Ribosomal RNA small subunit methyltransferase B [Xanthomonas
campestris pv. campestris]
Length = 436
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D I V+ R+ D+ + + D L ++L AG +L +
Sbjct: 43 DPRDRALVEAICFAVLRRRPAYDVALRQW--LERPLPPRDAELKALLMAGFAQLDVL-QL 99
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
P +S V + +NAVL + R+
Sbjct: 100 PAHAALSATVEACRALGRPRQAGMVNAVLRRAQRE 134
>gi|62290679|ref|YP_222472.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
gi|82700594|ref|YP_415168.1| hypothetical protein BAB1_1822 [Brucella melitensis biovar Abortus
2308]
gi|148559652|ref|YP_001259653.1| sun protein [Brucella ovis ATCC 25840]
gi|189024891|ref|YP_001935659.1| Sun [Brucella abortus S19]
gi|237816180|ref|ZP_04595175.1| Sun, sun protein [Brucella abortus str. 2308 A]
gi|254689968|ref|ZP_05153222.1| Sun [Brucella abortus bv. 6 str. 870]
gi|254698119|ref|ZP_05159947.1| Sun [Brucella abortus bv. 2 str. 86/8/59]
gi|254708333|ref|ZP_05170161.1| Sun [Brucella pinnipedialis M163/99/10]
gi|254708815|ref|ZP_05170626.1| Sun [Brucella pinnipedialis B2/94]
gi|254731003|ref|ZP_05189581.1| Sun [Brucella abortus bv. 4 str. 292]
gi|256030341|ref|ZP_05443955.1| Sun [Brucella pinnipedialis M292/94/1]
gi|256061838|ref|ZP_05451973.1| Sun [Brucella neotomae 5K33]
gi|256258223|ref|ZP_05463759.1| Sun [Brucella abortus bv. 9 str. C68]
gi|256370218|ref|YP_003107729.1| sun protein [Brucella microti CCM 4915]
gi|260547084|ref|ZP_05822822.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260755503|ref|ZP_05867851.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
gi|260758726|ref|ZP_05871074.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260762560|ref|ZP_05874897.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260884524|ref|ZP_05896138.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|261315833|ref|ZP_05955030.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|261316307|ref|ZP_05955504.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
gi|261325843|ref|ZP_05965040.1| fmu domain-containing protein [Brucella neotomae 5K33]
gi|265987375|ref|ZP_06099932.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|294851054|ref|ZP_06791730.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
07-0026]
gi|297249071|ref|ZP_06932779.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
bv. 5 str. B3196]
gi|62196811|gb|AAX75111.1| Sun, sun protein [Brucella abortus bv. 1 str. 9-941]
gi|82616695|emb|CAJ11778.1| SAM (and some other nucleotide) binding motif:Bacterial
Sun/eukaryotic nucleolar Nop1/Nop2:Antitermination
protein NusB:NusB [Brucella melitensis biovar Abortus
2308]
gi|148370909|gb|ABQ60888.1| sun protein [Brucella ovis ATCC 25840]
gi|189020463|gb|ACD73185.1| Sun [Brucella abortus S19]
gi|237788642|gb|EEP62855.1| Sun, sun protein [Brucella abortus str. 2308 A]
gi|256000381|gb|ACU48780.1| sun protein [Brucella microti CCM 4915]
gi|260095449|gb|EEW79327.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260669044|gb|EEX55984.1| fmu domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260672986|gb|EEX59807.1| fmu domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260675611|gb|EEX62432.1| fmu domain-containing protein [Brucella abortus bv. 6 str. 870]
gi|260874052|gb|EEX81121.1| fmu domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|261295530|gb|EEX99026.1| fmu domain-containing protein [Brucella pinnipedialis B2/94]
gi|261301823|gb|EEY05320.1| fmu domain-containing protein [Brucella neotomae 5K33]
gi|261304859|gb|EEY08356.1| fmu domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|264659572|gb|EEZ29833.1| fmu domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|294821697|gb|EFG38693.1| ribosomal RNA small subunit methyltransferase B [Brucella sp. NVSL
07-0026]
gi|297174204|gb|EFH33561.1| ribosomal RNA small subunit methyltransferase B [Brucella abortus
bv. 5 str. B3196]
Length = 465
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|306844795|ref|ZP_07477380.1| Sun [Brucella sp. BO1]
gi|306274967|gb|EFM56737.1| Sun [Brucella sp. BO1]
Length = 465
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T ++ DL+ ARL A + L + S + +
Sbjct: 17 TNNNSAADLRPGL---AARLCAARLLGAVIEKNTSLDGLTDNAHGH--------PQYLAL 65
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D R I+ + + I+ I+ L + L +L V ++ +
Sbjct: 66 EPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFYLD-L 122
Query: 122 PVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
P + V A+ +NA+L +++R +E
Sbjct: 123 PDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|325926148|ref|ZP_08187509.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
perforans 91-118]
gi|325543493|gb|EGD14915.1| ribosomal RNA small subunit methyltransferase RsmB [Xanthomonas
perforans 91-118]
Length = 436
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + L D L ++L G +L +P +S V
Sbjct: 59 RRRPAYDIALRQWLERA--LPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
Length = 446
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 5/140 (3%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW---FRVIIHGVMDRKQHIDLLIS 88
+ EI+ + + L + +VD + + V R+ ID ++
Sbjct: 12 VNQEIAAEILEKLDKEVISEKELLRRFFLGKNVDYKIRGAVHAYVMEVSKRRNVIDFILE 71
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L K + + ++LR E+ VP + V IA F F+NA
Sbjct: 72 KALKPK-KLEDVKPFVRNLLRIATYEI-FFKKVPPALATDCAVRIAKKRFGIKAASFVNA 129
Query: 149 VLDKVSRKEEIKRSGCVSAI 168
+L K R + K +S
Sbjct: 130 ILRKAERVDLKKEMEKLSRT 149
>gi|229162801|ref|ZP_04290758.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
gi|228620683|gb|EEK77552.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
R309803]
Length = 360
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|254515962|ref|ZP_05128022.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
gi|219675684|gb|EED32050.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR5-3]
Length = 433
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 50/152 (32%), Gaps = 17/152 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A + + ++ + G S + + T D R I G +
Sbjct: 6 AVRACAARIIAEV-LRGDSLDRALESHLTI-------------LPGRDQPLCREICFGTL 51
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ +D L+ + D + ++ AG+ +L +P +S V A
Sbjct: 52 RQYPRLDALLGQL--LQKPLRAKDRDVHALALAGLYQLTSMR-IPAHAAVSATVDAATVL 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL + R+EE + A
Sbjct: 109 KKRQLSGLLNAVLRRFQREEEALLAALSDAQA 140
>gi|32490464|dbj|BAC79124.1| putative transcription termination protein [Streptomyces griseus]
Length = 66
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
LR G ELI P V+I E V +A +F D P F+NA
Sbjct: 19 LRLGAYELIWMDGTPDAVVIDEAVQLAKEFSTDDSPSFVNA 59
>gi|294084660|ref|YP_003551418.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664233|gb|ADE39334.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 446
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/143 (9%), Positives = 46/143 (32%), Gaps = 15/143 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R + L ++ + A ++ S D + R++ +
Sbjct: 23 KSRQICYELLCAVEAGSQ---------LDHALKAQEDI---SKLDDRDRRFVRLLATTCL 70
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ I+ +I+ ++ + +++ + + V +
Sbjct: 71 RRRGQIEKVIAPMISRRP---FGAQANANLILLMGAVQLLILKTGAHAAVDSTVELMRQS 127
Query: 138 FYGDEPKFINAVLDKVSRKEEIK 160
+ NAV+ +++R+ + +
Sbjct: 128 GFDRLCGMANAVMRRLTREGDTR 150
>gi|325913844|ref|ZP_08176203.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937]
gi|325539919|gb|EGD11556.1| NusB family protein [Xanthomonas vesicatoria ATCC 35937]
Length = 241
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA L + G S A+ + + D I V+
Sbjct: 11 ASRLAAAHVLTAVFDQGRSLK------------AELAAALPGIADPRDRALVEAICFAVL 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + + + D L ++L AG +L +P +S V
Sbjct: 59 RRRPAYDVALRQWM--ERPLPPRDAELKALLMAGFAQLDVL-QLPAHAALSATVEACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|323519897|gb|ADX94278.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii
TCDC-AB0715]
Length = 434
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + L+ L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKLISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ E G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFEQG 138
>gi|302803795|ref|XP_002983650.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
gi|300148487|gb|EFJ15146.1| hypothetical protein SELMODRAFT_47118 [Selaginella moellendorffii]
Length = 196
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/185 (14%), Positives = 50/185 (27%), Gaps = 44/185 (23%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE---------------------- 54
AR ++ LY + G E++ + R E
Sbjct: 12 RAARELSLCVLYAGLVSGSDPLEVLEDRMQARRERVDEKVLHQYDHDAKSGEPLYVSSES 71
Query: 55 -----LDVESVYLHVDLEWF-----------------RVIIHGVMDRKQHIDLLISSCLT 92
+ +D II + ++ + ++ L
Sbjct: 72 EAKELEFQQEQQSEIDAALLTAHPYVVYNKFVLRYGKEKIIKATSEGREKQEAVVKELLP 131
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
W +L + + + IE ++I+E V +A F G P+ +N L
Sbjct: 132 STWKDEGNGKLLETTIMHMAIAEIEVLGTSPNIVINEAVELAKRFCDGFAPRVVNGCLGN 191
Query: 153 VSRKE 157
R
Sbjct: 192 YFRSR 196
>gi|229092908|ref|ZP_04224042.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
gi|228690530|gb|EEL44313.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
Rock3-42]
Length = 360
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|228916502|ref|ZP_04080068.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928913|ref|ZP_04091945.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935179|ref|ZP_04098006.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947584|ref|ZP_04109874.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123379|ref|ZP_04252583.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|229186105|ref|ZP_04313274.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228597281|gb|EEK54932.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus BGSC
6E1]
gi|228660155|gb|EEL15791.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus 95/8201]
gi|228812104|gb|EEM58435.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824544|gb|EEM70349.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830720|gb|EEM76325.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843081|gb|EEM88163.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 360
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+I VP I E V IA + +N VL + R+
Sbjct: 1 MIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGVLRSIQRE 42
>gi|332678642|gb|AEE87771.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf.
novicida Fx1]
Length = 426
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT++
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYQFFRHYFSLEKIIALYLTQQTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V D K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKDLKIIWAKKLVNRILREITRNIE 124
>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
Length = 416
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 16/133 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L + ++Y + ++ +++G +
Sbjct: 3 RQFALDIL-----------LKYKQEKSYLNLSLHACFQNQQISREQKDFITRVVYGTVQN 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+++ L+ L + +L + + S+P I++E V +A
Sbjct: 52 MLYLEYLLEPHLKTRVK-----AYEKMLLLMSLYQHEFMDSIPDYAIVNEAVRLAKKKKG 106
Query: 140 GDEPKFINAVLDK 152
+FINAVL+
Sbjct: 107 TKTAQFINAVLNH 119
>gi|294625236|ref|ZP_06703876.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|294666265|ref|ZP_06731516.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292600464|gb|EFF44561.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292603974|gb|EFF47374.1| Sun protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 436
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ L + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLK------------AELALTLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ +L + L D L ++L G +L +P +S V
Sbjct: 59 RRRPAYELALRQWLERA--LPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|167855267|ref|ZP_02478036.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
gi|167853631|gb|EDS24876.1| tryptophanyl-tRNA synthetase [Haemophilus parasuis 29755]
Length = 432
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
++ R Q + Q+ G S + +I + +S DL W +
Sbjct: 2 KKHSTRAVTAQIILQVLDQGKSLSTLIP-------------EAQSQLDSKDLAWVQETTF 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
G+ ++ +I L + ++ +L G+ +L+ VP + E V
Sbjct: 49 GICRVLPRLEAIIK--LLVEKPLKNKTRLVHCLLLVGLYQLLYMR-VPPHAAVDEVVNST 105
Query: 135 HDFFYGDEPKFINAVLDKVSRKEEI 159
N VL + R++E
Sbjct: 106 KVLKLDSFRALTNGVLRRFLREQEA 130
>gi|256544908|ref|ZP_05472279.1| sun protein [Anaerococcus vaginalis ATCC 51170]
gi|256399407|gb|EEU13013.1| sun protein [Anaerococcus vaginalis ATCC 51170]
Length = 426
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
+Y+ T++ E D+ + I+GV++ K +++ +++ K +
Sbjct: 12 YRISYKNEKSTDIINEIAKKVEDISYITKNIYGVLENKLYLEYILAKLSKIKVKKLDKKV 71
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
L ++ + I++E V + + F+NA+L R E+
Sbjct: 72 KLILLIGIYNI---HFLDRKNYAIVNELVNLTKKVSF-KSKSFVNAILRSYIRDEK 123
>gi|192288464|ref|YP_001989069.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
gi|192282213|gb|ACE98593.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris TIE-1]
Length = 450
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLQKRRMLDDQLEGPAAH--------PGLKTLSDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R ++ L++ L S L G +++ VP + V +
Sbjct: 68 RRLGTLEGLLAKLLDRGVPTD--APRAKSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
+NAVL + +R+ + ++ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQPLVEELAAGTP 157
>gi|39933110|ref|NP_945386.1| Sun/ nucleolar Nop1/Nop2 [Rhodopseudomonas palustris CGA009]
gi|39652735|emb|CAE25474.1| Bacterial Sun/eukaryotic nucleolar Nop1/Nop2 [Rhodopseudomonas
palustris CGA009]
Length = 450
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLQKRRMLDDQLEGPAAH--------PGLKTLSDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R ++ L++ L S L G +++ VP + V +
Sbjct: 68 RRLGTLEGLLAKLLDRGVPTD--APRAKSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
+NAVL + +R+ + ++ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQPLVEELAAGTP 157
>gi|319409409|emb|CBI83055.1| SUN-family protein [Bartonella schoenbuchensis R1]
Length = 447
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
H D R I+ + + I +S L + L +L +++
Sbjct: 44 KLSHRDRLLCRAILMAALRHRGQITAALSRFLKRPLPLQ--ALSLQHLLHISAAQILYLD 101
Query: 120 SVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRK 156
+P I V +A +NA+L +R+
Sbjct: 102 -IPDHAAIDLAVQMAKIDPRTRRFSGLVNAILRNFARE 138
>gi|332184460|gb|AEE26714.1| Ribosomal RNA small subunit methyltransferase B [Francisella cf.
novicida 3523]
Length = 426
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 18/139 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ +I S + + ++ D + +++ +
Sbjct: 4 RAIAAKAILEILDNKYSLLTLEQKLLSH------------NLSEQDKSFVKLLCYEFFRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + S L +K + +I+ +L+ + P I+E V D
Sbjct: 52 YYSLEKIASLYLKQKTKITAKVLIMLGVLQIFEV------KQPYYATINESVSACKDLKI 105
Query: 140 GDEPKFINAVLDKVSRKEE 158
K +N +L +++R
Sbjct: 106 IWAKKLVNGILREITRNIN 124
>gi|187735067|ref|YP_001877179.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425119|gb|ACD04398.1| sun protein [Akkermansia muciniphila ATCC BAA-835]
Length = 412
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 42/140 (30%), Gaps = 21/140 (15%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++ + D + ++ V+
Sbjct: 9 RQTALNCLRSWHAG-----------RSFAETLVDRECSRTALPSADRHLVQALVFSVLRN 57
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D +I + + IL+ G+ +L + + E V +A
Sbjct: 58 QTWLDHVIGTLRKGRLDVEA-----RLILQLGLSQL-FLLGMADHAAVYETVNLA----S 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+NA+L R+E+
Sbjct: 108 VRLRGLVNAILRNALRREKT 127
>gi|118497926|ref|YP_898976.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella
tularensis subsp. novicida U112]
gi|194323149|ref|ZP_03056933.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. novicida FTE]
gi|118423832|gb|ABK90222.1| tRNA and rRNA cytosine-C5-methylases, sun protein [Francisella
novicida U112]
gi|194322513|gb|EDX19993.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. novicida FTE]
Length = 426
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V D K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKDLKIIWAKKLVNRILREITRNIE 124
>gi|120552984|ref|YP_957335.1| sun protein [Marinobacter aquaeolei VT8]
gi|120322833|gb|ABM17148.1| 16S rRNA m(5)C-967 methyltransferase [Marinobacter aquaeolei VT8]
Length = 433
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 9/131 (6%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
++ E + + + + I +G ++ ++ L +
Sbjct: 12 AANVLLAVEQGQSLSQCLPPALNQLPPEQRPQLQAICYGTCRWFHRLEGELNQRLKK--P 69
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ D I+ ++ + +L V+ +E V +N VL
Sbjct: 70 LRKPDRIIHHLMLVALFQLRYSEQATYAVL-NETVEACRALDKPHLTGLVNGVLRA---- 124
Query: 157 EEIKRSGCVSA 167
+R G
Sbjct: 125 --AEREGAPEP 133
>gi|316931426|ref|YP_004106408.1| Fmu (Sun) domain-containing protein [Rhodopseudomonas palustris
DX-1]
gi|315599140|gb|ADU41675.1| Fmu (Sun) domain protein [Rhodopseudomonas palustris DX-1]
Length = 450
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 14/153 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLQKRRMLDDQLEGPAAH--------PGLKTLSDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R ++ L++ L S L G +++ VP + V +
Sbjct: 68 RRLGTLEGLLARLLDRGVPTD--APRAKSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
+NAVL + +R+ + ++ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQPLVEELAAGTP 157
>gi|78049480|ref|YP_365655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78037910|emb|CAJ25655.1| ribosomal RNA small subunit methyltransferase B [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 436
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ D+ + L D L ++L G +L +P +S V
Sbjct: 59 RRRPAYDVALRQWLERA--LPPRDAELKALLMVGFAQLDVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|270157755|ref|ZP_06186412.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|289163976|ref|YP_003454114.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
gi|269989780|gb|EEZ96034.1| ribosomal RNA small subunit methyltransferase B [Legionella
longbeachae D-4968]
gi|288857149|emb|CBJ10965.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Legionella
longbeachae NSW150]
Length = 458
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 5/117 (4%)
Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
T+ T L + I G + + + + + ++
Sbjct: 41 YILTHLLVEKTPLSQLMASSAEVSPMTKEICFGFCRHYFRLQAIANCLIHK----KPKEI 96
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L L G+ +L V + E V + G +NAVL R+ +
Sbjct: 97 ELWVALLIGIYQLHYMKLPDYAV-VKETVALLEKIKKGWAKGLVNAVLRNFCRQHDE 152
>gi|291534144|emb|CBL07257.1| Transcription termination factor [Megamonas hypermegale ART12/1]
Length = 116
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A+ L ++ + Y + + ++ D + +++G +
Sbjct: 2 NAREVALNILNEV-----------YTQQAYANISLSRHLQKNQLSDQDRRFITELVYGTV 50
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ++ + ++++ + +ILR G+ +++ +P +E V +A
Sbjct: 51 KAGDTLLWILKKFVNR--PLNKIEPTIINILRLGIYQIVFMDKIPESAACNEAVNLAK 106
>gi|21244523|ref|NP_644105.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
gi|46396950|sp|Q8PG22|RSMB_XANAC RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|21110194|gb|AAM38641.1| Sun protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 436
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 15/139 (10%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+RLAA + L + G S A+ + + D I V+
Sbjct: 11 ASRLAAARVLTAVFDQGRSLK------------AELAATLPGIGDPRDRALVEAICFAVI 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R+ ++ + L D L ++L G +L +P +S V
Sbjct: 59 RRRPAYEVALRQWLERA--LPPRDAELKALLMVGFAQLEVL-QLPAHAALSATVDACRAL 115
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NA+L + R+
Sbjct: 116 GRPRQAGMVNAILRRAQRE 134
>gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
Length = 418
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV+ L+++ Y A + D I++G + R
Sbjct: 13 RALAVRVLHRVLSGDS-----------YAAPALDASLASAGLPARDAGLATHIVYGTLRR 61
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ L ++ L + ++L AG E + P +++EYV +A + +
Sbjct: 62 APALRLALNPLLRG-----KTAPKAWALLLAGAFEKLYL-GTPEHAVVNEYVSLARESRF 115
Query: 140 GDEPKFINAVLDKVS 154
P +NAVL +V
Sbjct: 116 AP-PGLVNAVLRRVQ 129
>gi|34499717|ref|NP_903932.1| sun protein [Chromobacterium violaceum ATCC 12472]
gi|34105568|gb|AAQ61922.1| probable sun-like protein [Chromobacterium violaceum ATCC 12472]
Length = 416
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 6/144 (4%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
YQI + I T + + + +G + + +
Sbjct: 2 YQIQQLAAEILARIEAGTTLTDALADVQRQAGKLTPAERGALQDLSYGSLRHLGVLRHCL 61
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFIN 147
+ + + +L + +L + V + E V +A G +N
Sbjct: 62 RQLVPHPLP----EPQVERLLLIALYQLQYTRAAQYAV-VHEAVTLAGMMARGKFKALVN 116
Query: 148 AVLDKVSRKE-EIKRSGCVSAITQ 170
VL R+ E+ + + Q
Sbjct: 117 GVLRNFQRRRDELLANAAADEVAQ 140
>gi|262370763|ref|ZP_06064087.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
johnsonii SH046]
gi|262314125|gb|EEY95168.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
johnsonii SH046]
Length = 434
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R V+ L + G S ++ ++ D + ++ G + +
Sbjct: 15 RAQVVKTLLAVQ-NGQSLASVLQQHMAI-------------VSDKDRALYHELVLGCLRQ 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + LT+ + ++ + L G+ +L+ C V ISE V A
Sbjct: 61 WHALKQVTLPLLTKPLE----NQVVETCLYVGLYQLL-CTRVAAHAAISETVEAAKQLGM 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
+ +NA+L + +R+ E
Sbjct: 116 ENLSGVVNAILRRATRETE 134
>gi|217077823|ref|YP_002335541.1| sun protein [Thermosipho africanus TCF52B]
gi|217037678|gb|ACJ76200.1| sun protein [Thermosipho africanus TCF52B]
Length = 415
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
+ +R + ++ + +F+ +I GV+ +++++D +I S L ++ +
Sbjct: 12 RKKFRRGIFSSEFYQAFSYVEEKAFFKNLIFGVLRKQEYLDWIIDSYLKKRD----IPPS 67
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ +ILR G +LI + V ++ V + +NAVL K+++
Sbjct: 68 IRTILRIGAYQLIFTNKPSYSV-VNNCVELVEKKS---FRGLVNAVLRKIAK 115
>gi|308190107|ref|YP_003923038.1| transcription termination factor [Mycoplasma fermentans JER]
gi|307624849|gb|ADN69154.1| transcription termination factor [Mycoplasma fermentans JER]
Length = 139
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R RL + LY+ +++ + +++ ++ +
Sbjct: 1 MQNRRQFRLGIINVLYRYELMDQKIN-VNELFDSESNLSNEQFSHLEKIAK--------- 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+S L E WS+ R+ ++ +IL G EL+ S+ ++II+E V
Sbjct: 51 ------NYDFYKKAVSQFLKEGWSWERISPLIRAILINGTHELM---SIEPKIIINESVE 101
Query: 133 IAHDFFYG--DEPKFINAVLDKVSR 155
I +F + K +NA+L+KV +
Sbjct: 102 ITKYYFEDEKNFYKMVNAILEKVYK 126
>gi|262280615|ref|ZP_06058399.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
calcoaceticus RUH2202]
gi|262258393|gb|EEY77127.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
calcoaceticus RUH2202]
Length = 434
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 19/154 (12%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R R VQ L ++ G S I++ D F
Sbjct: 4 VSSNSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALF 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ G + + + + L++ + + + + L G+ +++ C + ISE
Sbjct: 50 HELVLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISE 104
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V + +NA+L + +R+ + + G
Sbjct: 105 TVDATKQLGFPALSGIVNAILRRATRETDEFQQG 138
>gi|218666805|ref|YP_002424535.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519018|gb|ACK79604.1| sun protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 434
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 19/149 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AA+ L +D G + + D + ++ G +
Sbjct: 18 AVRKAAITVLRGVD-SGQTVDAALLPV---------------SLTGTDRATLQWLVLGTL 61
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ L S + + D L +L + EL P +++++V +
Sbjct: 62 REFLSVQAL--SAKLLRKPWREEDADLGFLLSLALFELRH-GQRPAFAVVNDWVEMTEAV 118
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+NAVL + R+ E+ + V
Sbjct: 119 KKPWARGLMNAVLRRYLREREVLDTALVD 147
>gi|198282170|ref|YP_002218491.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198246691|gb|ACH82284.1| sun protein [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 431
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 19/149 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AA+ L +D G + + D + ++ G +
Sbjct: 15 AVRKAAITVLRGVD-SGQTVDAALLPV---------------SLTGTDRATLQWLVLGTL 58
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ L S + + D L +L + EL P +++++V +
Sbjct: 59 REFLSVQAL--SAKLLRKPWREEDADLGFLLSLALFELRH-GQRPAFAVVNDWVEMTEAV 115
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+NAVL + R+ E+ + V
Sbjct: 116 KKPWARGLMNAVLRRYLREREVLDTALVD 144
>gi|148654179|ref|YP_001281272.1| Fmu (Sun) domain-containing protein [Psychrobacter sp. PRwf-1]
gi|148573263|gb|ABQ95322.1| Fmu (Sun) domain protein [Psychrobacter sp. PRwf-1]
Length = 528
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 24/161 (14%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M+ + N + R+A + L I G S + ++
Sbjct: 1 MSSKPNSTTQNKN-----VRVAVINTLLSIQQ-GQSLSGLLDPLLNSLNGD--------- 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + ++ + L+ S ++ + + ++ G+ +L+ +
Sbjct: 46 ----DKGFAHALLLTTLRHWHATARLLDSLADNPID----EIEVRTTIQLGITQLLYL-N 96
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V I E V Y +NAVL KV++ R
Sbjct: 97 VADHAAIHETVEAVKHIDYARASGLVNAVLRKVAKNPNKFR 137
>gi|33864549|ref|NP_896108.1| transcription antitermination protein NusB [Synechococcus sp. WH
8102]
gi|33632072|emb|CAE06525.1| NusB family protein [Synechococcus sp. WH 8102]
Length = 211
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ V++++ ID + S + E W SRL + ILR V++L
Sbjct: 113 QEQIRHGAMDRVSCVLNKRDRIDAELDSVM-EGWRLSRLPRLDRDILRLAVVDLR-DLGT 170
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V SE V +A+ + + IN VL +
Sbjct: 171 PAPVAFSEAVELANRYSDEQGRRMINGVLRRF 202
>gi|254497984|ref|ZP_05110747.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
LLAP12]
gi|254352761|gb|EET11533.1| rRNA methyltransferase (SUN protein) [Legionella drancourtii
LLAP12]
Length = 426
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I G + + L ++ + + L G+ +L + V + E
Sbjct: 38 KEICFGFCRHYFRLQAIADCLLKKRPK----EAEIWIALLIGLYQLHYMNQPDYAV-VKE 92
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
V + +NAVL R++E
Sbjct: 93 TVALLEKTKKAWAKGLVNAVLRNFCRQKEE 122
>gi|169824361|ref|YP_001691972.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
gi|167831166|dbj|BAG08082.1| putative rRNA methylase [Finegoldia magna ATCC 29328]
Length = 423
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D+ + + + ++ + +D +IS C + +RLD I+ ILR
Sbjct: 22 SEILKTYDYGDLDKRDIAYIKKCVFTEIENRFFVDYVISKCSDLE--INRLDKIVLEILR 79
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
E++ + V + E V +A ++NAVL +V R
Sbjct: 80 MATTEILFMKTADYAV-VDEAVELAGSI--TRYKDYVNAVLREVCR 122
>gi|77456243|ref|YP_345748.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens
Pf0-1]
gi|77380246|gb|ABA71759.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 436
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + G + + L + F D + ++L G+ +L+
Sbjct: 30 DKVEDRDRGFTQDLAFGTARWQPRLSALAEKL--LQKPFKAADADVEALLLVGLYQLLYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP I E V A +NAVL R+ E
Sbjct: 88 R-VPPHAAIGETVGCADKLKKPWAKGLLNAVLRNAQREHEA 127
>gi|239832893|ref|ZP_04681222.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
gi|239825160|gb|EEQ96728.1| Sun, sun protein [Ochrobactrum intermedium LMG 3301]
Length = 465
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 25/170 (14%)
Query: 3 IQDNKKDLKLSHRRG-------------IARLAAVQALYQIDIIGCSTTEIISEYETYRF 49
+ D K K +++ ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPLTNNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNTHGH-- 58
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
D R I+ + + I+ I+ L + L +L
Sbjct: 59 ------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLH 110
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
+ ++ +P + V A+ +NA+L ++SR +E
Sbjct: 111 VAIAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLSRNKE 159
>gi|52842799|ref|YP_096598.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629910|gb|AAU28651.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 427
Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I +G + + + + ++ D L +L G+ +L + V + E
Sbjct: 37 KEICYGFCRHYFRLQSIADTLINKRPK----DNELWIVLLIGIYQLQYMNKPDYAV-VKE 91
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + +NAVL R+++
Sbjct: 92 TVSLLGQVKKSWAKGLVNAVLRNFCRRKD 120
>gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 455
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 13/149 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L ++D G D L + +++G +
Sbjct: 12 ARGIAFEVLRRVDEGGAYA----------SRALDAALGAAGALDPREAGLATQLVYGTLR 61
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R +D ++ + + LD LR G +L+ P + E V +A
Sbjct: 62 RALALDAALAPH--SRRPLAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVTLAKAAD 118
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+G ++NAVL +SR + A
Sbjct: 119 HGRAAGYVNAVLRALSRAPRFPDPPALEA 147
>gi|54020397|ref|YP_115733.1| hypothetical protein mhp220 [Mycoplasma hyopneumoniae 232]
gi|53987570|gb|AAV27771.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
Length = 253
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 109 NNKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 158
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 159 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 209
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 210 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249
>gi|144227492|gb|AAZ44249.2| hypothetical protein MHJ_0158 [Mycoplasma hyopneumoniae J]
Length = 253
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 109 NNKKIEFRNLTKRRLGRMGVISVIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 158
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 159 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 209
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 210 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 249
>gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
Length = 455
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 49/149 (32%), Gaps = 13/149 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A L +++ G D L + +++G +
Sbjct: 12 ARGIAFDVLRRVEEGGAYA----------SRALDAALGAAGALDPREAGLATELVYGTLR 61
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R +D ++ + LD LR G +L+ P + E V +A
Sbjct: 62 RALALDAALAPHSRRA--LAELDPAARVALRLGAYQLLVL-GTPAHAAVGETVALAKAVD 118
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+G ++NAVL +SR + A
Sbjct: 119 HGRAAGYVNAVLRSLSRAARFPDPPALEA 147
>gi|312601103|gb|ADQ90358.1| hypothetical protein MHP168_141 [Mycoplasma hyopneumoniae 168]
Length = 231
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
+ K + + +R + R+ + +Y + + + + + D
Sbjct: 87 NNKKIEFRNLTKRRLGRMGVISIIYIWQLFDKNIDIKEIKTKYFELTIDQ---------- 136
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+++ + + +I+ L W++ R+ ++ SIL G EL VP
Sbjct: 137 ------LKLLNFIKKNYSFLRKVINLQLKSNWNWERILPLIRSILLVGAAELFF---VPS 187
Query: 124 EVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKR 161
++ +E V I F +E F+NAVL K+ EIK
Sbjct: 188 RIVFNEAVEITKIFSIAGDNEFCFVNAVLQKIYNYYEIKN 227
>gi|78183594|ref|YP_376028.1| transcription antitermination protein NusB [Synechococcus sp.
CC9902]
gi|78167888|gb|ABB24985.1| NusB antitermination factor [Synechococcus sp. CC9902]
Length = 211
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
I V+ +++ ID + + E W RL I ILR V++L
Sbjct: 113 QEKVRSAAMERIAQVIRQRESIDARLDQVM-EGWRLGRLPRIDRDILRLAVVDLQTM-GT 170
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V +E V +A+ + + IN VL +
Sbjct: 171 PAPVAFNEAVELANRYSDEQGRRMINGVLRRF 202
>gi|229815471|ref|ZP_04445803.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
13280]
gi|229809004|gb|EEP44774.1| hypothetical protein COLINT_02519 [Collinsella intestinalis DSM
13280]
Length = 478
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 16/135 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RL A++ L G E+ + + + D + R + GV
Sbjct: 18 RLVALRILIAARESGRYARELAA-----------DACASASLDSRDAAFARRLALGVTGC 66
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D ++S L + S + LR G EL+ + P V +S+ V +A
Sbjct: 67 SGCLDDALNSVLDDPRSL---TADVRDALRIGAYELLYLGTSPQ-VAVSQAVELARM-CA 121
Query: 140 GDEPKFINAVLDKVS 154
NAVL +V+
Sbjct: 122 HGAAGLANAVLRRVA 136
>gi|114775554|ref|ZP_01451122.1| Sun protein [Mariprofundus ferrooxydans PV-1]
gi|114553665|gb|EAU56046.1| Sun protein [Mariprofundus ferrooxydans PV-1]
Length = 404
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+ + + + R +++GV+ R ++ S
Sbjct: 1 MQVRKAAIESLADILVRQRKAEQAMERYGVRLDARGRGLLHELVYGVLRRFYSLEADYSR 60
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
S+ D L G +L VP +SE V A F+NAV
Sbjct: 61 FCR-----SKPDDTARMALLIGTYQLRYMR-VPAHAALSETVA-AVMQSNPKAGGFVNAV 113
Query: 150 LDKVS 154
L +VS
Sbjct: 114 LRRVS 118
>gi|30249919|ref|NP_841989.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
gi|30180956|emb|CAD85883.1| sun; rRNA methylase [Nitrosomonas europaea ATCC 19718]
Length = 426
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 17/138 (12%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
L AVQA+ ++ G + TE++ S + I +GV+
Sbjct: 6 LLAVQAIREV-FAGANLTEVLRNIWQ----------TGSHLTPQQRGAIQDIAYGVLRHY 54
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FY 139
+D ++ L + D L +L + +L P I+ V +
Sbjct: 55 GQLDAILHKLLNKPV----QDKQLHYLLAVALYQLRYSK-APAHAIVDHAVSSSRKITRN 109
Query: 140 GDEPKFINAVLDKVSRKE 157
+NAVL RK
Sbjct: 110 PAVSGLVNAVLRNFMRKR 127
>gi|238021729|ref|ZP_04602155.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
gi|237866343|gb|EEP67385.1| hypothetical protein GCWU000324_01632 [Kingella oralis ATCC 51147]
Length = 418
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 16/143 (11%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A Q L G + ++ ++ D + I +G
Sbjct: 9 LAAQTL-AAVASGKNLSDELAHIIA----------QNPELTAQDKGMLQDIAYGCQRHLG 57
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD 141
+ ++ L + L L + +L + P +++E V +G
Sbjct: 58 SLKFMLGKMLNKPIDNEALQSY----LLVALYQLNHTQNAP-HAVVNEAVNHIAQIGHGQ 112
Query: 142 EPKFINAVLDKVSRKEEIKRSGC 164
F NA+L + R+++ C
Sbjct: 113 YRSFANAILRRFLREKDGLNKAC 135
>gi|260553856|ref|ZP_05826124.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
RUH2624]
gi|260404976|gb|EEW98478.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
RUH2624]
Length = 434
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ E + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETEDFQQG 138
>gi|50086581|ref|YP_048091.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
ADP1]
gi|49532555|emb|CAG70269.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter sp.
ADP1]
Length = 434
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++ G + + + + LT+ + + + + L G+ +++ C
Sbjct: 39 NDIPERDRALFHELVLGTLRQWYALKSITLPLLTKPLN----NETVETCLYLGLYQVL-C 93
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P ISE V + +NA+L + +R+ E ++
Sbjct: 94 TRIPAHAAISETVTATKQLGFHALSGIVNAILRRATRETESFKNS 138
>gi|223984315|ref|ZP_03634458.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
12042]
gi|223963715|gb|EEF68084.1| hypothetical protein HOLDEFILI_01752 [Holdemania filiformis DSM
12042]
Length = 412
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 22/137 (16%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A Q L I G + ++ + W +I+GV+
Sbjct: 5 RKRAWQGLNAILNEGQYANLWLRQHGQ-------------TLSEEEKRWVTAVIYGVLRH 51
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ + + + + +L V +L I+++ V +
Sbjct: 52 REPLRWQWRDLVRNVP-----EPSVAVLLDMSVYQLFYLDKGAEYAIVNDAVELC----P 102
Query: 140 GDEPKFINAVLDKVSRK 156
+ +NAVL ++ R+
Sbjct: 103 RSKKGLVNAVLRQLLRR 119
>gi|71066692|ref|YP_265419.1| hypothetical protein Psyc_2138 [Psychrobacter arcticus 273-4]
gi|71039677|gb|AAZ19985.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 524
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ ++ L I G S ++ D + ++ + +
Sbjct: 26 RVRVIRTLLAIQ-NGQSLASVLDPLLN-------------SLHDGDKGFAHALLLTTLRQ 71
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ L+ S + ++ G+ +L+ V I E V A + +
Sbjct: 72 WYALERLLDSLADNSIDEKEVRTT----IQVGLTQLLYL-QVADHAAIHETVEAAKEIEF 126
Query: 140 GDEPKFINAVLDKVSRK 156
INA+L KV++
Sbjct: 127 AHATGLINAILRKVAKN 143
>gi|325267933|ref|ZP_08134582.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
gi|324980619|gb|EGC16282.1| ribosomal RNA small subunit methyltransferase B [Kingella
denitrificans ATCC 33394]
Length = 421
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 58 ESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E D + + +G + +++ L + + +L + L + +L
Sbjct: 34 EPALSAQDKGMLQDLAYGCQRFYGSLHFMLNRLLNKPVD----NPLLYAHLLVALYQLNH 89
Query: 118 CHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ P V ++E V G F NA+L + R+ E
Sbjct: 90 TRNAPYAV-VNETVRHIGKIGRGQYRSFANAILRRFLREREGLNKAA 135
>gi|260466787|ref|ZP_05812972.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
gi|259029399|gb|EEW30690.1| Fmu (Sun) domain protein [Mesorhizobium opportunistum WSM2075]
Length = 475
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 4/122 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I L++ + L IL
Sbjct: 66 DHENGHPQYKALDPRDRGLVRAILVTALRYRMTITGLLARR--LEKPLPPNASALSHILH 123
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+++ +P + V A +N VL ++R ++ + ++A
Sbjct: 124 VAAAQILFLD-IPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKDTELPAALAAT 182
Query: 169 TQ 170
+
Sbjct: 183 DE 184
>gi|85714014|ref|ZP_01045003.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
gi|85699140|gb|EAQ37008.1| tRNA and rRNA methylase [Nitrobacter sp. Nb-311A]
Length = 454
Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 12/143 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R A L I + E + + D R ++ ++
Sbjct: 20 ATRRTAADILDGILHKRRTLDEQLEGATAH--------PGLKALADRDRALMRRLVATIL 71
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + L+S L S L G +++ VP + V +
Sbjct: 72 RRLGTLGHLLSRLLDRGIPTD--APRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 128
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+NAVL + +R+ +
Sbjct: 129 RRAAKYAGLVNAVLRRCAREGQA 151
>gi|126643464|ref|YP_001086448.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii ATCC 17978]
Length = 405
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++ G + + + + L++ + + + + L G+ +++ C
Sbjct: 10 NQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-C 64
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ ISE V + +NA+L + +R+ E G
Sbjct: 65 TRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQG 109
>gi|319777409|ref|YP_004137060.1| transcription termination factor [Mycoplasma fermentans M64]
gi|238810315|dbj|BAH70105.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|318038484|gb|ADV34683.1| Transcription termination factor [Mycoplasma fermentans M64]
Length = 139
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R RL + LY+ +++ + +++ ++ +
Sbjct: 1 MQNRRQFRLGIINVLYRYELMDQKIN-VNELFDSESNLSNEQFSHLEKIAK--------- 50
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+S L E WS+ R+ ++ +IL G EL+ S+ ++II+E V
Sbjct: 51 ------NYDFYKKAVSQFLKEGWSWERISPLIRAILINGAHELM---SIEPKIIINESVE 101
Query: 133 IAHDFFYG--DEPKFINAVLDKVSR 155
I +F + K +NA+L+KV +
Sbjct: 102 ITKYYFEDEKNFYKMVNAILEKVYK 126
>gi|261364702|ref|ZP_05977585.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
gi|288566995|gb|EFC88555.1| ribosomal RNA small subunit methyltransferase B [Neisseria mucosa
ATCC 25996]
Length = 419
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 46/139 (33%), Gaps = 8/139 (5%)
Query: 29 QIDIIGCSTTEIISEYETYRFCAD---TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
+ + + I+ R D + + I +G +
Sbjct: 2 SMSLAQKLAADSIAAVAEGRNLQDVLAQIRAAHPELTAQENGALQDIAYGCQRYLGSLKH 61
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+++ L + + L S+L A + +L + P +++E V G F
Sbjct: 62 MLAQMLKKPID----NPQLESLLLAAMYQLHYTRNAP-HAVVNEAVESIAKIGRGQFRSF 116
Query: 146 INAVLDKVSRKEEIKRSGC 164
NA+L + R+ + + C
Sbjct: 117 ANAILRRFLRERQKLEASC 135
>gi|27375690|ref|NP_767219.1| SUN protein [Bradyrhizobium japonicum USDA 110]
gi|27348828|dbj|BAC45844.1| SUN protein [Bradyrhizobium japonicum USDA 110]
Length = 448
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 12/143 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + + + + + + D R ++ V+
Sbjct: 16 AARRIAADIVDGVLHKHRTLDDQLDGSGAH--------PGLKTLADRDRALMRRLVATVL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + ++S L + S L G +++ VP + V +
Sbjct: 68 RRLGTLGHVLSRLLDKGIP--SEAPRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
+NAVL + +R+ +
Sbjct: 125 RRAARYAGLVNAVLRRCAREGQA 147
>gi|319407809|emb|CBI81460.1| SUN-family protein [Bartonella sp. 1-1C]
Length = 456
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + D R I+ + + I + +S L +L
Sbjct: 43 DNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQITVALSRF--LVRPLPAQAFSLHHLLH 100
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ +++ +P I V +A +NA+L +R+ I R +
Sbjct: 101 ISITQILYLD-IPDHAAIDLAVRVAKIDPRMRRFSGLVNAILRNFAREAPILRMQTPT 157
>gi|116071798|ref|ZP_01469066.1| transcription antitermination protein NusB [Synechococcus sp.
BL107]
gi|116065421|gb|EAU71179.1| transcription antitermination protein NusB [Synechococcus sp.
BL107]
Length = 202
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
I V+ +++ ID + + E W +RL I ILR V++L
Sbjct: 104 QEQIRSAAMERIAQVIRQRESIDARLDQVM-EGWRLARLPRIDRDILRLVVVDLQTM-GT 161
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V +E V +A+ + + IN VL +
Sbjct: 162 PAPVAFNEAVELANRYSDEQGRRMINGVLRRF 193
>gi|260436645|ref|ZP_05790615.1| transcription antitermination factor NusB [Synechococcus sp. WH
8109]
gi|260414519|gb|EEX07815.1| transcription antitermination factor NusB [Synechococcus sp. WH
8109]
Length = 211
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S + + + + V+ +++ ID + + E
Sbjct: 86 ASLSSAEQVLNGLSASLELPRLLLLGDQEQIRRGAMERVQKVLTQREGIDRRLDQVM-EG 144
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W +RL I ILR V++L P V +E V +A+ + + IN VL +
Sbjct: 145 WRLTRLPRIDRDILRLAVVDLESLR-TPAPVAFNEAVELANRYSDDQGRRMINGVLRRF 202
>gi|70733533|ref|YP_257172.1| sun protein [Pseudomonas fluorescens Pf-5]
gi|68347832|gb|AAY95438.1| sun protein [Pseudomonas fluorescens Pf-5]
Length = 441
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA +AL + S + D + + + G
Sbjct: 4 RLAAAKALTAVLNGKASLNSSLPIQLD-------------KVEARDRGFTQDLAFGTARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ VP I E V A
Sbjct: 51 QPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLLYAR-VPAHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
+NAVL + R+ E
Sbjct: 108 PWAKALLNAVLRRAQRESET 127
>gi|330952317|gb|EGH52577.1| 16S rRNA methyltransferase B [Pseudomonas syringae Cit 7]
Length = 441
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + G + + L + + F D + ++L G+ +L +P
Sbjct: 36 DRGLTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLFYSR-IPAH 92
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E A +NAVL R E
Sbjct: 93 AAIGETGGCADKLKKPWAKGLLNAVLRNAQRDGEA 127
>gi|292489815|ref|YP_003532705.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
gi|291555252|emb|CBA23523.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
CFBP1430]
Length = 456
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 19/150 (12%)
Query: 4 QDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLH 63
Q+ + +K R A + + Q+ G S + ++ +
Sbjct: 22 QNCESSMKKM---TNLRCIAARTIEQVVEQGQSLSNVLP-------------AAQKCVDD 65
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
D + + +GV+ ++ +IS ++ + + + ++ G+ +L+ +P
Sbjct: 66 KDAALVQELCYGVLRTLPQLEWVISKLMSRPMTGKQRAIHF--LIMVGLYQLMFTR-IPP 122
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
++E V A IN VL +
Sbjct: 123 HAALAETVEGAVALKRPQLKGLINGVLRQF 152
>gi|116254448|ref|YP_770286.1| ribosomal RNA small subunit methyltransferase B [Rhizobium
leguminosarum bv. viciae 3841]
gi|115259096|emb|CAK10207.1| putative ribosomal RNA small subunit methyltransferase B [Rhizobium
leguminosarum bv. viciae 3841]
Length = 460
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + ID I+ L L
Sbjct: 47 LDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARAL 104
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE--IKR 161
+L G +++ VP + V A+ K +NA+L ++ R++E +
Sbjct: 105 HHVLAIGAAQILYLD-VPDHSAVDLAVEQANQDPRNRRFAKLVNAILRRLGREKEQVLAD 163
Query: 162 SGCVSA 167
G V+
Sbjct: 164 IGKVAP 169
>gi|78211568|ref|YP_380347.1| transcription antitermination protein NusB [Synechococcus sp.
CC9605]
gi|78196027|gb|ABB33792.1| NusB family protein [Synechococcus sp. CC9605]
Length = 211
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S + + + + V+ +++ ID + + E
Sbjct: 86 ASLSSAEQVLNGLSASLELPRLLLLGDQEQIRRGAMERVQKVLTQREGIDKRLDQVM-EG 144
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W +RL I ILR V++L P V +E V +A+ + + IN VL +
Sbjct: 145 WRLTRLPRIDRDILRLAVVDLESLR-TPAPVAFNEAVELANRYSDEQGRRMINGVLRRF 202
>gi|148358673|ref|YP_001249880.1| rRNA methyltransferase [Legionella pneumophila str. Corby]
gi|296108237|ref|YP_003619938.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280446|gb|ABQ54534.1| rRNA methyltransferase (SUN protein) [Legionella pneumophila str.
Corby]
gi|295650139|gb|ADG25986.1| Sun protein [Legionella pneumophila 2300/99 Alcoy]
Length = 427
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I +G + + + + ++ D + +L G+ +L + V + E
Sbjct: 37 KEICYGFCRHYFRLQSIADTLINKRPK----DNEVWIVLLIGIYQLQYMNKPDYAV-VKE 91
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + +NAVL R+++
Sbjct: 92 TVSLLGQVKKSWAKGLVNAVLRNFCRRQD 120
>gi|54298582|ref|YP_124951.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
gi|53752367|emb|CAH13799.1| hypothetical protein lpp2646 [Legionella pneumophila str. Paris]
Length = 427
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I +G + + + + ++ D + +L G+ +L + V + E
Sbjct: 37 KEICYGFCRHYFRLQSIADTLINKRPK----DNEVWIVLLIGIYQLQYMNKPDYAV-VKE 91
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + +NAVL R+++
Sbjct: 92 TVSLLGQVKKSWAKGLVNAVLRNFCRRQD 120
>gi|54295430|ref|YP_127845.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
gi|53755262|emb|CAH16756.1| hypothetical protein lpl2516 [Legionella pneumophila str. Lens]
Length = 427
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ I +G + + + + ++ D + +L G+ +L + V + E
Sbjct: 37 KEICYGFCRHYFRLQSIADTLINKRPK----DNEVWIVLLIGIYQLQYMNKPDYAV-VKE 91
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V + +NAVL R+++
Sbjct: 92 TVSLLGQVKKSWAKGLVNAVLRNFCRRQD 120
>gi|23502667|ref|NP_698794.1| sun protein [Brucella suis 1330]
gi|161619734|ref|YP_001593621.1| Fmu (Sun) domain-containing protein [Brucella canis ATCC 23365]
gi|163845392|ref|YP_001623047.1| hypothetical protein BSUIS_B1292 [Brucella suis ATCC 23445]
gi|254703581|ref|ZP_05165409.1| hypothetical protein Bsuib36_06589 [Brucella suis bv. 3 str. 686]
gi|260568886|ref|ZP_05839354.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261754214|ref|ZP_05997923.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
gi|23348676|gb|AAN30709.1| sun protein [Brucella suis 1330]
gi|161336545|gb|ABX62850.1| Fmu (Sun) domain protein [Brucella canis ATCC 23365]
gi|163676115|gb|ABY40225.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|260154270|gb|EEW89352.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261743967|gb|EEY31893.1| fmu domain-containing protein [Brucella suis bv. 3 str. 686]
Length = 465
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 52/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L ++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRHLARNKE 160
>gi|325123992|gb|ADY83515.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
calcoaceticus PHEA-2]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|293610442|ref|ZP_06692742.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826786|gb|EFF85151.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|260557781|ref|ZP_05829994.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii ATCC 19606]
gi|260408572|gb|EEX01877.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii ATCC 19606]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|239502749|ref|ZP_04662059.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
baumannii AB900]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|184159973|ref|YP_001848312.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
gi|183211567|gb|ACC58965.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter baumannii ACICU]
gi|322509890|gb|ADX05344.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii 1656-2]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|148377730|ref|YP_001256606.1| transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
gi|291320415|ref|YP_003515678.1| transcription termination factor NusB [Mycoplasma agalactiae]
gi|148291776|emb|CAL59165.1| Transcription termination factor (NusB) [Mycoplasma agalactiae PG2]
gi|290752749|emb|CBH40724.1| Transcription termination factor (NusB) [Mycoplasma agalactiae]
Length = 139
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 21/145 (14%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R RL + LY+ ++ + S +D E F+
Sbjct: 1 MKSRREYRLGVINVLYKYEL---------------LEAKLLPSQIFSDESDIDNEQFKQ- 44
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + + I L + ++++L ++ +IL E S+ +++I+E V
Sbjct: 45 LELISLNYDYYQKTILKFLNQNTAWTKLPALIRAILLNATHE---LLSISPKIVINEAVE 101
Query: 133 IAHDFFYGDE--PKFINAVLDKVSR 155
I F+ + K +NA+L + +
Sbjct: 102 ITKSFYEQEANFYKLVNALLQNIYK 126
>gi|93007290|ref|YP_581727.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
gi|92394968|gb|ABE76243.1| Fmu (Sun) [Psychrobacter cryohalolentis K5]
Length = 524
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ ++ L I G S ++ D + ++ + +
Sbjct: 26 RVRVIRTLLAIQ-NGQSLASVLDPLLN-------------SLHDGDKGFAHALLLTTLRQ 71
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ L+ S + ++ G+ +L+ V I E V A + +
Sbjct: 72 WYALERLLDSLADNSIDEKEVRTT----IQVGLTQLLYL-QVADHAAIHETVEAAKEIEF 126
Query: 140 GDEPKFINAVLDKVSRK 156
INA+L KV++
Sbjct: 127 AHATGLINAILRKVAKN 143
>gi|169634914|ref|YP_001708650.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii SDF]
gi|169153706|emb|CAP02904.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Acinetobacter
baumannii]
Length = 434
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
+ R R VQ L ++ G S I++ D F +
Sbjct: 7 NSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALFHEL 52
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ G + + + + L++ + + + + L G+ +++ C + ISE V
Sbjct: 53 VLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISETVD 107
Query: 133 IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ +NA+L + +R+ + + G
Sbjct: 108 ATKQLGFPALSGIVNAILRRATRETDDFQQG 138
>gi|114330411|ref|YP_746633.1| sun protein [Nitrosomonas eutropha C91]
gi|114307425|gb|ABI58668.1| sun protein [Nitrosomonas eutropha C91]
Length = 426
Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 17/138 (12%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
L A+QA+ ++ G + E++ + S + I +G +
Sbjct: 6 LLAIQAIGEV-FAGANLNEVLRNIWQ----------INSRLTPQQRGAIQDIAYGTLRHY 54
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FY 139
+D ++ L + D L +L + +L P I+ V +
Sbjct: 55 GQLDAILHQLLNKP----AQDKSLHYLLAIALYQLCYSK-APAHAIVDHAVSSSRKITRN 109
Query: 140 GDEPKFINAVLDKVSRKE 157
INAVL R+
Sbjct: 110 PAASGLINAVLRNFMRQR 127
>gi|321310948|ref|YP_004193277.1| transcription termination factor N-utilization substance protein B
[Mycoplasma haemofelis str. Langford 1]
gi|319802792|emb|CBY93438.1| transcription termination factor N-utilization substance protein B
[Mycoplasma haemofelis str. Langford 1]
Length = 136
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R++ VQ +Y I ++ D D E+ +D
Sbjct: 12 RVSVVQVIYSELIADQDFSK-----LDLSDQRDNWTDFENKI-----------FDNYLDN 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
KQ +I S L WS RL+ + SIL + E P++V+I+E V A ++
Sbjct: 56 KQRYISVIESYLNADWSLERLNTLCASILLEAISEFHVLK-TPIKVLITESVKTAKNYCD 114
Query: 140 GDEPKFINAVLDKVSRKE 157
+E + +N VL+ + E
Sbjct: 115 ENEYRIVNRVLEDFLKNE 132
>gi|296114826|ref|ZP_06833475.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978640|gb|EFG85369.1| Fmu (Sun) domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 438
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 39 EIISEYETYRFCADTELDVES---VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
+I++ +R +T ++ D + V+ ++S L
Sbjct: 33 DIVTGVIEHRRMLETSMENSPVARQAEPRDRAAAHRLGASVLRHMGTATEVLSPFLK--- 89
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ ++L GV +L+ PV ++ V +A +NAVL ++++
Sbjct: 90 --KEPPEPVRAVLLIGVAQLLFL-GTPVHAAVATSVALARRRGLAPFAGLVNAVLRRIAQ 146
Query: 156 KEE 158
K +
Sbjct: 147 KGD 149
>gi|299768269|ref|YP_003730295.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
gi|298698357|gb|ADI88922.1| tRNA and rRNA cytosine-C5-methylase [Acinetobacter sp. DR1]
Length = 434
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 19/154 (12%)
Query: 10 LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWF 69
+ + R R VQ L ++ G S I++ D F
Sbjct: 4 VSSNSSRFNLRAQVVQTLLKVQQ-GQSLASILNTQLN-------------QVAERDRALF 49
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
++ G + + + + L++ + + + + L G+ +++ C + ISE
Sbjct: 50 HELVLGTLRQWFALKSISLPLLSKPLN----NETVETCLYVGLYQVL-CTRIAAHAAISE 104
Query: 130 YVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V + +NA+L + +R+ + + G
Sbjct: 105 TVDATKQLGFPALGGIVNAILRRATRETDDFQQG 138
>gi|320527282|ref|ZP_08028467.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
moorei F0204]
gi|320132306|gb|EFW24851.1| ribosomal RNA small subunit methyltransferase B [Solobacterium
moorei F0204]
Length = 405
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 12/125 (9%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+ + + + F + L + ++ II+G + K ++
Sbjct: 1 MSVRAEVLNILERVFRQNGFASL--LLRRANISKEEMGLASEIIYGTIRNKTLLEEQWRP 58
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
+ ++L V +L+ S+P +I E V +A E +F+NAV
Sbjct: 59 FTKHVKP------RVVALLNMSVYQLLFLDSIPSYAVIFEAVELA----GKSEKEFVNAV 108
Query: 150 LDKVS 154
L KV
Sbjct: 109 LRKVQ 113
>gi|146337494|ref|YP_001202542.1| putative ribosomal RNA small subunit methyltransferase B
[Bradyrhizobium sp. ORS278]
gi|146190300|emb|CAL74296.1| putative Ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967
methyltransferase)(rsmB) [Bradyrhizobium sp. ORS278]
Length = 450
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + + + + + + D R ++ +
Sbjct: 16 AARRIAADVIDGVLHKHRTLDDQLDGPGAH--------PGLKQLADRDRALMRRLVATTL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + ++S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGNVLSRLLDRGIPTD--APRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQAD 124
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + +R+
Sbjct: 125 RRAAKYAGLVNAVLRRCARE 144
>gi|110635746|ref|YP_675954.1| Fmu (Sun) [Mesorhizobium sp. BNC1]
gi|110286730|gb|ABG64789.1| Fmu (Sun) [Chelativorans sp. BNC1]
Length = 460
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L + + D R I+ +
Sbjct: 31 ARRTAAKLL--------AAVIDARTPLDALTDNEHGHPQYLSLEQRDRALVRAILISALR 82
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF- 137
+ I+ L+ L L IL G +++ VP + V A
Sbjct: 83 HRCTIEKLVGRRLDR--PLPPNAHSLSHILHVGAAQILFLD-VPDSAAVDLAVTQAKADP 139
Query: 138 FYGDEPKFINAVLDKVSRKE 157
+NAVL ++R++
Sbjct: 140 RAARFSGLVNAVLRNLARRK 159
>gi|212703769|ref|ZP_03311897.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
gi|212672737|gb|EEB33220.1| hypothetical protein DESPIG_01817 [Desulfovibrio piger ATCC 29098]
Length = 505
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
DT E D + +G + + + ++ L + L ++
Sbjct: 67 LEDTARRQEGGLAERDRHLAAELAYGTLRMENRLAFVLGKVLRQPLKLPLPLRRLLAV-- 124
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L+ +P ++ V +A + K +N L V R +
Sbjct: 125 -AAYGLLFLDRLPAHAVLHTAVDLARQLYGPGLAKVVNGSLRSVQRLGDA 173
>gi|126668178|ref|ZP_01739139.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
gi|126627327|gb|EAZ97963.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter sp. ELB17]
Length = 432
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 9/131 (6%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
E++ E + + + + +G +D + + +
Sbjct: 11 AAEVLLSVEQGQSLSQCLPPSLLRLPLNLRPQLQALCYGTCRWFHRLDDELQGRMKK--P 68
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
D ++ ++ + +L V+ +E V +N VL
Sbjct: 69 LKNHDRVVHHLMLVALFQLRFSQQATYAVL-NETVEACRAMDKPHLTGLVNGVLRS---- 123
Query: 157 EEIKRSGCVSA 167
+R G +A
Sbjct: 124 --AEREGAPAA 132
>gi|55980820|ref|YP_144117.1| RNA methyltransferase [Thermus thermophilus HB8]
gi|55772233|dbj|BAD70674.1| Sun protein (RNA methyltransferase) [Thermus thermophilus HB8]
Length = 398
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV L ++D G S + D + +++G + R
Sbjct: 7 RALAVAVLLEVDRGG------------RAQLLLDRALRRSPWPERDRAYATFLVYGALRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L++ L + ILR G LE P +S +V A +
Sbjct: 55 LRLLDHLLAPLLPRPEGL---PPEVRWILRLGALEW--LEGKPDHARVSPWVEEAKRRY- 108
Query: 140 GDEPKFINAVLDKVS 154
+NAVL +++
Sbjct: 109 PGLAGLVNAVLRRLA 123
>gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [marine bacterium HP15]
Length = 426
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + + + +G +D +++ L + + D I+ ++ + +L
Sbjct: 27 NRLPANERPVLQALCYGTCRWFYRLDGELNNRLKK--PLRKPDRIIHHLMLVALFQLRFS 84
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
V+ +E V +N VL R+ + + + +
Sbjct: 85 QQANYAVL-NETVEACRALDKPHLTGLVNGVLRAAEREGAQEPADDAARFS 134
>gi|241206925|ref|YP_002978021.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860815|gb|ACS58482.1| Fmu (Sun) domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 460
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R I++ + ID I+ L L
Sbjct: 47 LDGALDHEHGNPAYRALGESDRALVRAILNTTLRHLPRIDAAIAGLLDS--PLPEGARAL 104
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE--IKR 161
+L G +++ VP + V A+ K +NA+L ++ R++E + +
Sbjct: 105 HHVLAIGAAQILYLD-VPDHSAVDLAVEQANLDPRNRRFAKLVNAILRRLGREKEQVLDQ 163
Query: 162 SGCVSA 167
G V+
Sbjct: 164 IGKVAP 169
>gi|284045174|ref|YP_003395514.1| sun protein [Conexibacter woesei DSM 14684]
gi|283949395|gb|ADB52139.1| sun protein [Conexibacter woesei DSM 14684]
Length = 444
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 14/140 (10%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A L +++ G ++ + D + + G
Sbjct: 9 SPARQVAAAVLRRVESDGAYADRALAG-----------EARRAGLDARDHAFAMALAFGA 57
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ R++ +D +I + +LD + LR G+L+L+ V + + V +A
Sbjct: 58 VQRRRTLDHVIERL--ARRPVGQLDPPVRDALRLGLLQLLFLGGVAPHAAVDQSVELAKA 115
Query: 137 FFYGDEPKFINAVLDKVSRK 156
K +NAVL + +R+
Sbjct: 116 AGGPG-YKLVNAVLRRGARE 134
>gi|296386489|ref|ZP_06875988.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa PAb1]
Length = 434
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 48/140 (34%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F +D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAVDTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|257066168|ref|YP_003152424.1| Fmu (Sun) domain-containing protein [Anaerococcus prevotii DSM
20548]
gi|256798048|gb|ACV28703.1| Fmu (Sun) domain protein [Anaerococcus prevotii DSM 20548]
Length = 430
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHV--DLEWFRVIIHGVMDRKQHIDLLISSCLT 92
I++ + + +L + +I+GV++ K +ID +I
Sbjct: 2 NDLELILNSLVRIICEDKKSNEEINYLEKRVGNLPYATKVIYGVLENKIYIDYMIGKLSK 61
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
K ++ + +IL G+ + + + + V + F+NA+L
Sbjct: 62 IKL--KKIHKNVLTILEIGIYNIHFLETKDY-ATVDKLVELTKR-KNRRSSGFVNAILRN 117
Query: 153 VSR-KEEIKR 161
R ++EI +
Sbjct: 118 FIRDEKEIAK 127
>gi|218295080|ref|ZP_03495916.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
gi|218244283|gb|EED10808.1| NusB/RsmB/TIM44-like protein [Thermus aquaticus Y51MC23]
Length = 398
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 19/142 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A+ L ++D G + S D + +++GV+ R
Sbjct: 7 RGLALAVLLEVDRGG------------RAQLLLDRVLDRSDLPERDKAYVTHLVYGVLRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L+ L + + ILR G LE +S +V A +
Sbjct: 55 LRLLDFLLEPHLRAPDRLPKEVLW---ILRLGALEW--LLGKEDHARVSPWVEEAKAR-H 108
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+NAVL ++ + E
Sbjct: 109 PALSGLVNAVLRRL-KPREAPE 129
>gi|304399258|ref|ZP_07381124.1| sun protein [Pantoea sp. aB]
gi|304353184|gb|EFM17565.1| sun protein [Pantoea sp. aB]
Length = 433
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 3/131 (2%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
I++ S I + + D + I GV+ ++ LI
Sbjct: 4 SINLRSLSAQLIERVVDKGESLNTALPAAQKKLSDKDSALVQEICFGVLRTLPQLEALIG 63
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ + +L ++ G+ +L VP ++E V A +N
Sbjct: 64 KLMAR--PLTGKQRVLHYLIMVGLYQLEYTR-VPAHAALAETVAGAEVLKRTSLKGLLNG 120
Query: 149 VLDKVSRKEEI 159
VL + R+ E
Sbjct: 121 VLRQFQRQREE 131
>gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus sp. MC-1]
gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus sp. MC-1]
Length = 452
Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 52 DTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAG 111
+ ++ +S I+ G + ++ ++ + + + ++L
Sbjct: 31 EQQIHQQSGTSPEMRGRAHEIVVGTIRHMALLEATLTRFM--QKDLKAKHHYVRAVLLTA 88
Query: 112 VLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDK 152
+ + P+ + E V + + F+NAVL +
Sbjct: 89 LYQAQFMR-TPIHSAVDEAVKLVKQQPRDHNLSGFVNAVLRR 129
>gi|107099010|ref|ZP_01362928.1| hypothetical protein PaerPA_01000017 [Pseudomonas aeruginosa PACS2]
gi|218888763|ref|YP_002437627.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
gi|218768986|emb|CAW24744.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
Length = 434
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|254237740|ref|ZP_04931063.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126169671|gb|EAZ55182.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
Length = 434
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|222087916|ref|YP_002546454.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
[Agrobacterium radiobacter K84]
gi|221725364|gb|ACM28520.1| tRNA and rRNA cytosine-C5-methylase (RNA methyltransferase) protein
[Agrobacterium radiobacter K84]
Length = 469
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
A+ D R I++ + I+ I+S L L
Sbjct: 56 LDGMLDAEGGNPAYKALGDSDRALVRAILNSALRHLPRIEAAIASLLDS--PLPEGARAL 113
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
+L G +++ VP + V A+ K +NA+L ++ R+++
Sbjct: 114 HHVLVVGAAQMLYLD-VPDHSAVDIAVEQANQDPRNRRFAKLVNAILRRIGREKQ 167
>gi|49088860|gb|AAT51614.1| PA0017 [synthetic construct]
Length = 435
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|15595215|ref|NP_248707.1| hypothetical protein PA0017 [Pseudomonas aeruginosa PAO1]
gi|46397033|sp|Q9I7A9|RSMB_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|9945836|gb|AAG03407.1|AE004441_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 434
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|116053737|ref|YP_788172.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa UCBPP-PA14]
gi|115588958|gb|ABJ14973.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 434
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|256045414|ref|ZP_05448306.1| Fmu domain protein, Sun [Brucella melitensis bv. 1 str. Rev.1]
gi|260565697|ref|ZP_05836180.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|265991841|ref|ZP_06104398.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|260151070|gb|EEW86165.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|263002797|gb|EEZ15200.1| fmu domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 465
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|225853258|ref|YP_002733491.1| Fmu domain-containing protein, Sun [Brucella melitensis ATCC 23457]
gi|256114379|ref|ZP_05455112.1| Fmu domain protein, Sun [Brucella melitensis bv. 3 str. Ether]
gi|256263253|ref|ZP_05465785.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
gi|265995679|ref|ZP_06108236.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|225641623|gb|ACO01537.1| Fmu domain protein, Sun [Brucella melitensis ATCC 23457]
gi|262766963|gb|EEZ12581.1| fmu domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|263093217|gb|EEZ17314.1| NOL1/NOP2/sun family protein [Brucella melitensis bv. 2 str. 63/9]
gi|326409818|gb|ADZ66883.1| Fmu domain-containing protein, Sun [Brucella melitensis M28]
gi|326539536|gb|ADZ87751.1| Fmu domain protein, Sun [Brucella melitensis M5-90]
Length = 465
Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 24/171 (14%)
Query: 1 MTIQD------NKKDLKLSHR----RG--IARLAAVQALYQIDIIGCSTTEIISEYETYR 48
M + NKK S+ R ARL A + L + S + +
Sbjct: 1 MNDKKPAPKRGNKKPQTNSNSAADLRPGLAARLCAARLLGAVIEKNTSLDGLTDNAHGH- 59
Query: 49 FCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSIL 108
D R I+ + + I+ I+ L + L +L
Sbjct: 60 -------PQYLALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLL 110
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
V ++ +P + V A+ +NA+L +++R +E
Sbjct: 111 HVAVAQIFYLD-LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|298370615|ref|ZP_06981930.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281225|gb|EFI22715.1| ribosomal RNA small subunit methyltransferase B [Neisseria sp. oral
taxon 014 str. F0314]
Length = 425
Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P V ++
Sbjct: 43 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAAMYQLHYTRNAPHAV-VN 97
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
E V G F NA+L + R+ + +
Sbjct: 98 EAVESIAKIGRGQFRSFANAILRRFLRERQKLEA 131
>gi|115522058|ref|YP_778969.1| sun protein [Rhodopseudomonas palustris BisA53]
gi|115516005|gb|ABJ03989.1| sun protein [Rhodopseudomonas palustris BisA53]
Length = 449
Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + + D R ++ ++
Sbjct: 16 AARRIAADILDGVLHKRRMLDDQLDGPAAH--------PGLKTLSDRDRALMRRLVATIL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
+ + ++S L S L G +++ VP + V +
Sbjct: 68 RKLGTLGHVLSRLLDRGVPTD--APRAQSALLIGAAQILWME-VPDHAAVDLSVRLVQSD 124
Query: 137 FFYGDEPKFINAVLDKVSRKEE 158
+NAVL + +R+ +
Sbjct: 125 RRAAKYAGLVNAVLRRCAREGQ 146
>gi|330806740|ref|YP_004351202.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327374848|gb|AEA66198.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 436
Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + G + + L + + F D + ++L G+ +L+
Sbjct: 30 DKVEDRDRGFTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLLYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP I E V A INAVL + R+ E
Sbjct: 88 R-VPAHAAIGETVGCADKLKKPWAKALINAVLRRAQRESET 127
>gi|332969155|gb|EGK08187.1| ribosomal RNA small subunit methyltransferase B [Kingella kingae
ATCC 23330]
Length = 418
Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 5/120 (4%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ + D + + +G + ++ L + + +L
Sbjct: 21 KNLADELANIIAQNPDLTAQDKGMLQDLAYGCQRFLGSLRYMLGKLLNKPLD----NPLL 76
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ L + +L + P +++E V G F NA+L + R++E C
Sbjct: 77 EAHLLVAMYQLNHTKNAP-HAVVNEAVEYIGKMGRGQYRSFANAILRRFQREQEGLNKSC 135
>gi|292900857|ref|YP_003540226.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
gi|291200705|emb|CBJ47838.1| ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC 49946]
Length = 429
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + +GV+ ++ +IS ++ + + + ++ G+ +L+ +
Sbjct: 37 DDKDAALVQELCYGVLRTLPQLEWVISKLMSRPMTGKQRAIHF--LIMVGLYQLMFTR-I 93
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P ++E V A IN VL +
Sbjct: 94 PPHAALAETVEGAVALKRPQLKGLINGVLRQF 125
>gi|56459128|ref|YP_154409.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
gi|56178138|gb|AAV80860.1| tRNA and rRNA cytosine-C5-methylase [Idiomarina loihiensis L2TR]
Length = 442
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D I +GV+ ++ L+ + +L +L G +L C
Sbjct: 44 KLSDADKRLASAISYGVLRVLPSLNKLVGA--KLDKPLKGKLKVLHYLLLVGAYQL-YCL 100
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ +S V A + +N +L ++ R+
Sbjct: 101 RIKDHAAVSATVEAARILGKRNHKGLVNGILRQLLRE 137
>gi|46198807|ref|YP_004474.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27]
gi|46196430|gb|AAS80847.1| 16S rRNA m(5)C 967 methyltransferase [Thermus thermophilus HB27]
Length = 398
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 18/135 (13%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AV L ++D G + + D + +++G + R
Sbjct: 7 RALAVAVLLEVDRGG------------RAQLLLDRALRRAPWPERDRAYATFLVYGALRR 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ +D L++ L + ILR G LE P +S +V A +
Sbjct: 55 LRLLDHLLAPLLPRPEGL---PPEVRWILRLGALEW--LEGKPDHARVSPWVEEAKRRY- 108
Query: 140 GDEPKFINAVLDKVS 154
+NAVL +++
Sbjct: 109 PGLAGLVNAVLRRLA 123
>gi|254374738|ref|ZP_04990219.1| sun protein [Francisella novicida GA99-3548]
gi|151572457|gb|EDN38111.1| sun protein [Francisella novicida GA99-3548]
Length = 426
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V D K +N +L +++R
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKDLKIIWAKKLVNRILREITRNIN 124
>gi|153008423|ref|YP_001369638.1| Fmu (Sun) domain-containing protein [Ochrobactrum anthropi ATCC
49188]
gi|151560311|gb|ABS13809.1| Fmu (Sun) domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 453
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
ARL A + L + S + + D R I+ +
Sbjct: 13 AARLCAARLLGAVIEKNTSLDGLTDNTHGH--------PQYLALEPRDRALVRAILGSAL 64
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ I+ I+ L + L +L + ++ ++P + V A+
Sbjct: 65 RNRGSIERAINKRLDR--PLPENAVALKHLLHVAIAQIFYL-NLPDHSAVDLAVEAANAD 121
Query: 138 -FYGDEPKFINAVLDKVSRKEE 158
+NA+L ++SR +E
Sbjct: 122 PRNRKYAGLVNALLRRLSRNKE 143
>gi|152985582|ref|YP_001345414.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
gi|150960740|gb|ABR82765.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
Length = 434
Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSGALPAQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ VP I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADNDIHALLLIGLYQLLYTR-VPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|208779665|ref|ZP_03247010.1| ribosomal RNA small subunit methyltransferase B [Francisella
novicida FTG]
gi|208744626|gb|EDZ90925.1| ribosomal RNA small subunit methyltransferase B [Francisella
novicida FTG]
Length = 426
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V D K +N +L +++R
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVTACKDLKIIWAKKLVNRILREITRNIN 124
>gi|261214774|ref|ZP_05929055.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
gi|260916381|gb|EEX83242.1| fmu domain-containing protein [Brucella abortus bv. 3 str. Tulya]
Length = 252
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 2 TIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVY 61
T ++ DL+ ARL A + L + S + +
Sbjct: 17 TNSNSAADLRPGL---AARLCAARLLGAVIEKNTSLDGLTDNAHGH--------PQYLAL 65
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D R I+ + + I+ I+ L + L +L V ++ +
Sbjct: 66 EPRDRALVRAILGSALRNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFYLD-L 122
Query: 122 PVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
P + V A+ +NA+L +++R +E
Sbjct: 123 PDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 160
>gi|163869265|ref|YP_001610521.1| SUN-family protein [Bartonella tribocorum CIP 105476]
gi|161018968|emb|CAK02526.1| SUN-family protein [Bartonella tribocorum CIP 105476]
Length = 454
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I +S + + L +L
Sbjct: 42 DNEHGHPQYLKLSQRDRLLCRAILTTSLRHRGQITAALS--CFLERPLPSQALSLQHLLH 99
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVS 166
V +++ +P I V +A F +F +NA+L V+R+ R +
Sbjct: 100 ISVAQILYLD-IPDHAAIDLAVRVAK--FDPRMRRFSGVVNALLRNVAREAAPLRQQVPT 156
>gi|311029972|ref|ZP_07708062.1| sun protein [Bacillus sp. m3-13]
Length = 126
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A++AL ++ + +++ Y D F I++G + R
Sbjct: 5 RELALEALLNVEKKQAYSNLLLNNYLD-----------SGKLSKKDAGLFTEIVYGTIQR 53
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D ++S + ++ + +L+ + +++ VP I E V IA
Sbjct: 54 TITLDYYLASYIEKQKKLQ---DWVKVLLKMTLYQMLYLDKVPARAAIYEAVEIAKKRRT 110
Query: 140 GD 141
Sbjct: 111 QR 112
>gi|261380548|ref|ZP_05985121.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
gi|284796516|gb|EFC51863.1| ribosomal RNA small subunit methyltransferase B [Neisseria subflava
NJ9703]
Length = 419
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + ++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKYMLGQMLKKPID----NPQLESLLLAAMYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQFRSFANAILRRFLRERD 129
>gi|194476880|ref|YP_002049059.1| transcription antitermination protein NusB [Paulinella
chromatophora]
gi|171191887|gb|ACB42849.1| transcription antitermination protein NusB [Paulinella
chromatophora]
Length = 203
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
+ + + + V+ ++ ID + + + E
Sbjct: 82 KSGLERAEQALNNLSASLELPYLLMLADRASVRQDALERVRFVLSNREKIDQRLDAVM-E 140
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W RL I ILR ++L P V +E V +A+ + + IN +L ++
Sbjct: 141 NWRLIRLPRIDRDILRLASVDLD-RLGTPAAVACNEAVEMANRYSDEQGRRMINGILRRL 199
Query: 154 S 154
Sbjct: 200 I 200
>gi|318042975|ref|ZP_07974931.1| transcription antitermination protein NusB [Synechococcus sp.
CB0101]
Length = 205
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
V+ ++ +D + + + E W +RL I ILR +++ + +
Sbjct: 112 QDEIRRGAVDRARAVLRSREDLDQRLDAVM-EGWRLTRLPRIDRDILRLAAVDIEQF-NT 169
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P V +E V +A+ + + IN VL +
Sbjct: 170 PAAVACNEAVELANRYSDEQGRRMINGVLRRF 201
>gi|187931420|ref|YP_001891404.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
tularensis subsp. mediasiatica FSC147]
gi|187712329|gb|ACD30626.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 426
Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKVLKIIWAKKLVNRILREMTRNIE 124
>gi|294669086|ref|ZP_06734172.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
gi|291309078|gb|EFE50321.1| ribosomal RNA small subunit methyltransferase B [Neisseria elongata
subsp. glycolytica ATCC 29315]
Length = 420
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 29 QIDIIGCSTTEIISEYETYRFCAD---TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDL 85
+ + E I+ R D +L + I +G +
Sbjct: 2 SMSLAQQLAAESIAAVAKGRNLQDVLAAIRAAHPELTAQELGALQDIAYGCQRYLGSLKY 61
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+++ L + + L S+L A + +L + P +++E V G F
Sbjct: 62 MLAQMLKKPI----GNPQLESLLLAALYQLNHTRNAP-HAVVNEAVENIAKIGRGQYRSF 116
Query: 146 INAVLDKVSRKEEIKRS 162
NA+L + R++E +
Sbjct: 117 ANAILRRFLREKEQLNA 133
>gi|319406332|emb|CBI79969.1| SUN-family protein [Bartonella sp. AR 15-3]
Length = 455
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + D R I+ + + I + +S L +L
Sbjct: 42 DNEYGHPQYLKLSYRDRLLCRAILGAALRHRSQITVALSHF--LVQPLPAQAFSLHHLLH 99
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ +++ +P I V +A +NA+L +R+ I R +
Sbjct: 100 ISITQILYLD-IPDHAAIDLAVRVAKIDSRLRRFSGLVNAILRNCAREAAILRVQTPT 156
>gi|148241109|ref|YP_001226266.1| transcription antitermination protein NusB [Synechococcus sp.
RCC307]
gi|147849419|emb|CAK26913.1| Transcription termination factor, NusB [Synechococcus sp. RCC307]
Length = 203
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
W + V + + +D I + + E W +RL I ILR V+E+ E P V
Sbjct: 112 RHWALLRAKAVAEAQPQLDQGIDAVM-EGWRLTRLPRIDQDILRLAVVEIDEF-QTPAAV 169
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKV 153
+E V +AH + + IN VL +
Sbjct: 170 ACNEAVELAHRYSDEAGRRMINGVLRRY 197
>gi|134301576|ref|YP_001121544.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. tularensis WY96-3418]
gi|134049353|gb|ABO46424.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. tularensis WY96-3418]
Length = 426
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKVLKIIWAKKLVNRILREMTRNIE 124
>gi|224457583|ref|ZP_03666056.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254371058|ref|ZP_04987060.1| sun protein [Francisella tularensis subsp. tularensis FSC033]
gi|254875277|ref|ZP_05247987.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987]
gi|151569298|gb|EDN34952.1| sun protein [Francisella tularensis subsp. tularensis FSC033]
gi|254841276|gb|EET19712.1| SUN protein [Francisella tularensis subsp. tularensis MA00-2987]
Length = 426
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKVLKIIWAKKLVNRILREMTRNIE 124
>gi|53803078|ref|YP_115239.1| sun protein [Methylococcus capsulatus str. Bath]
gi|53756839|gb|AAU91130.1| sun protein [Methylococcus capsulatus str. Bath]
Length = 431
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D + + + +GV+ + +D L+ T + +L L + +V
Sbjct: 39 DRAFVQSLCYGVLRAFETLDFLLGRLAT-----KPIRDPEIRLLALIGLHQLRSMNVKPH 93
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+SE V A +NA+L R++E S
Sbjct: 94 AAVSETVEAAGRKS--WAKPLLNAILRNYLRRKEELES 129
>gi|304392692|ref|ZP_07374632.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
R2A130]
gi|303295322|gb|EFL89682.1| ribosomal RNA small subunit methyltransferase B [Ahrensia sp.
R2A130]
Length = 471
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 16/161 (9%)
Query: 4 QDNKKDLKLSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
Q K LK S + AR A L +I G ++
Sbjct: 9 QRRKPSLKNSAPKDKPGLAARQVATTLLTRIVDDGRGLDGLLDTR--------HGPAALR 60
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D R I+ + + I+ + C+ K + L L +++
Sbjct: 61 DMPEADRLLVRAIVTTALRHRGEIEHALDRCMDRKPP--KNARQLIHALHVAAAQILFME 118
Query: 120 SVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP + V ++ D NAVL ++ R+++
Sbjct: 119 -VPDSAAVDLAVTALSSDQRSTRFSGLANAVLRRMGREKDT 158
>gi|319780892|ref|YP_004140368.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166780|gb|ADV10318.1| Fmu (Sun) domain protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 475
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 4/122 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I L++ + L IL
Sbjct: 66 DHENGHPQYKALDLRDRGLVRAILVTALRYRMTISGLLARR--LEKPLPPNATALSHILH 123
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+++ +P + V A +N VL ++R +E + ++A
Sbjct: 124 VAAAQILFLD-IPDSAAVDIAVTHAKSDPRTVRFSGLVNGVLRTLARAKETELPAALAAT 182
Query: 169 TQ 170
+
Sbjct: 183 DE 184
>gi|94499928|ref|ZP_01306464.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Oceanobacter sp.
RED65]
gi|94428129|gb|EAT13103.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Oceanobacter sp.
RED65]
Length = 184
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
L D + I G I+ L S + + S+L G+ +L
Sbjct: 35 DLLPEDKAQLQSICFGACRHFFSINAL--SKMLLDKPLPEKARLTQSLLWIGLYQLAHS- 91
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P I + V + K INA+L + R+++
Sbjct: 92 HMPEHAAIHQTVAACDNLKQTPFKKLINAILRRFQREKD 130
>gi|39938929|ref|NP_950695.1| transcription termination factor [Onion yellows phytoplasma OY-M]
gi|39722038|dbj|BAD04528.1| transcription termination factor [Onion yellows phytoplasma OY-M]
Length = 149
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 10 LKLSHRRGIARLA---AVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
+K + + +RL ++ LYQ D + + +
Sbjct: 1 MKHTQNKKESRLLRIEVMKLLYQYDFYQNNL------------------TLSQTNPNPIF 42
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+F+ II + ID +I+ L + +RL+ + +I+R EL+E ++ +I
Sbjct: 43 TFFQKIIT----NLKFIDEIITKSL-YDYKINRLNKVDRAIIRLATYELLET-NISHAII 96
Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKR 161
I E + + F + KF N +LD++ ++ ++ +
Sbjct: 97 IDEAIELTKQFCNLNDEKQHKFNNKLLDQIYQQLQMYK 134
>gi|325135221|gb|EGC57846.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M13399]
Length = 419
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|307943521|ref|ZP_07658865.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
TrichSKD4]
gi|307773151|gb|EFO32368.1| ribosomal RNA small subunit methyltransferase B [Roseibium sp.
TrichSKD4]
Length = 462
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 44/168 (26%), Gaps = 28/168 (16%)
Query: 8 KDLKLSHRRG--------------IARLAAVQALYQIDIIGCSTTEIISEY-ETYRFCAD 52
+ K + AR A L +
Sbjct: 7 RPFKPKQNKKPQTDAQRPQDKPGFAARKVAADIL---------GNVVHKHRPLDGELELK 57
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
+ D R I+ + + I +++ L ++ IL +
Sbjct: 58 SGHSGFRALEPKDRALVRAILGAALRHRGEISEILTRLLDRDIPEKTGRVLD--ILHVAI 115
Query: 113 LELIECHSVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEI 159
+++ +P +S V A +N VL ++ R+ ++
Sbjct: 116 AQMLYLD-IPDRAAVSLAVDHASADSRSRVYKGLVNGVLRRLGRERDM 162
>gi|319899453|ref|YP_004159550.1| SUN-family protein [Bartonella clarridgeiae 73]
gi|319403421|emb|CBI76989.1| SUN-family protein [Bartonella clarridgeiae 73]
Length = 455
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ + D R I+ + + I + +S LT L +L
Sbjct: 42 DNEYGHPQYLGLSYRDRLLCRAILGAALRHRSQITVALSRFLTR--PLPSQAFSLHHLLH 99
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
+ +++ VP I V +A +NA+L +R+ I R +
Sbjct: 100 ISITQILYLD-VPDHAAIDLAVRVAKIDPRMRRFSGLVNAILRNFAREAAILRVQTPT 156
>gi|254805842|ref|YP_003084063.1| Sun protein [Neisseria meningitidis alpha14]
gi|254669384|emb|CBA08529.1| Sun protein [Neisseria meningitidis alpha14]
gi|325205205|gb|ADZ00658.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M04-240196]
Length = 419
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
E V G F NAVL + R+ E S C
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLREREKLASSC 135
>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
Length = 429
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 16/136 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+AAV L ++ G + E + S + + +++G +
Sbjct: 6 RVAAVHVLERVLERGETLDEALE-------------AQFSRVSERNRSLLQALVYGALRW 52
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +++ R D +L +L G E + P +SE V A
Sbjct: 53 LTRLEAQVATL--TPRDDWRADPLLRGLLVIGAWEAQ-GLATPAHAAVSEAVDAARRLRR 109
Query: 140 GDEPKFINAVLDKVSR 155
+NAVL K+ +
Sbjct: 110 ARAAGMVNAVLRKLHK 125
>gi|13473485|ref|NP_105052.1| hypothetical protein mlr4098 [Mesorhizobium loti MAFF303099]
gi|14024234|dbj|BAB50838.1| mlr4098 [Mesorhizobium loti MAFF303099]
Length = 462
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 4/122 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I L++ + L IL
Sbjct: 53 DHENGHPQYKALDLRDRGLVRAILVTALRFRMTITGLLARR--LEKPLPPNATALSHILH 110
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+++ +P + V A +N VL ++R +E + ++A
Sbjct: 111 VAAAQILFLD-IPDSAAVDLAVTHAKSDPRTQRFSGLVNGVLRTLARAKETELPAALAAT 169
Query: 169 TQ 170
+
Sbjct: 170 DE 171
>gi|328541770|ref|YP_004301879.1| ribosomal RNA small subunit methyltransferase B [polymorphum gilvum
SL003B-26A1]
gi|326411522|gb|ADZ68585.1| Ribosomal RNA small subunit methyltransferase B [Polymorphum gilvum
SL003B-26A1]
Length = 439
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D R I+ + R+ I ++ + L ++ IL +++
Sbjct: 42 ALDSKDRALVRAILGACLRRRGRIAAIVDALLDRPIPEKTGRVLD--ILHVAAAQVLFLD 99
Query: 120 SVPVEVIISEYVCIAHD-FFYGDEPKFINAVLDKVSRKEEI 159
VP +S V +A +N VL ++SR+++
Sbjct: 100 -VPDRAAVSVAVDLAAADRRARPYKGLVNGVLRRLSREKDA 139
>gi|241760436|ref|ZP_04758530.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
gi|241319105|gb|EER55598.1| ribosomal RNA small subunit methyltransferase B [Neisseria
flavescens SK114]
Length = 417
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + ++ L + + L S+L A + +L + P +++
Sbjct: 43 LQDIAYGCQRYLGSLKHMLGQMLKKPID----NPQLESLLLAAMYQLHYTRNAP-HAVVN 97
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 98 EAVESIAKIGRGQFRSFANAILRRFLRERD 127
>gi|148251938|ref|YP_001236523.1| putative ribosomal RNA small subunit methyltransferase B
[Bradyrhizobium sp. BTAi1]
gi|146404111|gb|ABQ32617.1| putative Ribosomal RNA small subunit methyltransferase B
[Bradyrhizobium sp. BTAi1]
Length = 450
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + + + + + + D R ++ +
Sbjct: 16 AARRIAADVVDGVLHKHRTLDDQLDGTGAH--------PGLKQLADRDRALMRRLVATTL 67
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R + ++S L S L G +++ VP + V +
Sbjct: 68 RRLGTLGHVLSRLLDRGVPTD--APRAQSALLIGAAQILWMD-VPDHAAVDLSVRLVQAD 124
Query: 137 FFYGDEPKFINAVLDKVSRK 156
+NAVL + +R+
Sbjct: 125 RRAAKYAGLVNAVLRRCARE 144
>gi|229098334|ref|ZP_04229281.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
gi|229117351|ref|ZP_04246729.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228666251|gb|EEL21715.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock1-3]
gi|228685232|gb|EEL39163.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-29]
Length = 354
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P I E V IA + +N VL + R+
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36
>gi|58040030|ref|YP_191994.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
gi|58002444|gb|AAW61338.1| rRNA methyltransferase RsmB [Gluconobacter oxydans 621H]
Length = 447
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 6/114 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+R +T LD D + + + L+ L + +
Sbjct: 53 EHRRMLETTLDRAGAMDARDRASAHRLAATTLRHLGSMTELLQPLLRREPP-----EPVR 107
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L GV +L+ P + V + NAVL +V+R+ +
Sbjct: 108 CALLMGVAQLLHLE-TPPHAAVGTIVDLLRRRGLAPFAGLANAVLRRVAREGQE 160
>gi|229104427|ref|ZP_04235096.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
gi|228679125|gb|EEL33333.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
Rock3-28]
Length = 354
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+P I E V IA + +N VL + R+
Sbjct: 1 MPERAAIHEAVEIAKRRGHKGISGMVNGVLRSIQRE 36
>gi|56708432|ref|YP_170328.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670903|ref|YP_667460.1| Sun protein [Francisella tularensis subsp. tularensis FSC198]
gi|56604924|emb|CAG46016.1| Sun protein [Francisella tularensis subsp. tularensis SCHU S4]
gi|110321236|emb|CAL09399.1| Sun protein [Francisella tularensis subsp. tularensis FSC198]
gi|282159623|gb|ADA79014.1| Sun protein [Francisella tularensis subsp. tularensis NE061598]
Length = 426
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIGQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKVLKIIWAKKLVNRILREMTRNIE 124
>gi|319639525|ref|ZP_07994272.1| SUN protein [Neisseria mucosa C102]
gi|317399096|gb|EFV79770.1| SUN protein [Neisseria mucosa C102]
Length = 417
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + ++ L + + L S+L A + +L + P V ++
Sbjct: 43 LQDIAYGCQRYLGSLKHMLGQMLKKPID----NPQLESLLLAAMYQLHYTRNAPHAV-VN 97
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 98 EAVESIAKIGRGQFRSFANAILRRFLRERD 127
>gi|308188325|ref|YP_003932456.1| ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
gi|308058835|gb|ADO11007.1| Ribosomal RNA small subunit methyltransferase B [Pantoea vagans
C9-1]
Length = 433
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 43/131 (32%), Gaps = 3/131 (2%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
I++ S I + + D + I GV+ ++ LI
Sbjct: 4 SINLRSLSAQLIERVVDKGESLNTALPAAQKKLSDKDSALVQEICFGVLRTLPQLEALIG 63
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ + + +L ++ G+ +L VP ++E V A +N
Sbjct: 64 RLM--ERPLTGKQRVLHYLIMVGLYQLEYTR-VPAHAALAETVAGAEVLKRTSLKGLLNG 120
Query: 149 VLDKVSRKEEI 159
VL + R+ E
Sbjct: 121 VLRQFQRQREE 131
>gi|283769599|ref|ZP_06342495.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
extructa W1219]
gi|283103867|gb|EFC05253.1| putative ribosomal RNA small subunit methyltransferase B [Bulleidia
extructa W1219]
Length = 404
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 27/144 (18%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A V+ L E + Y + +L +E + +++G +
Sbjct: 4 REAIVRIL-----------EHVLYDHAYASLSLKQLKIEGSIG-----FVTEVVYGTLRH 47
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + + + + +L + + VP I++ V +
Sbjct: 48 YKLLQEQYKPFVKKIK------KKMDVLLVMALYQHHFMK-VPDYAIVNSTVELVKS--- 97
Query: 140 GDEPKFINAVLDKVSRKEEIKRSG 163
E F+NAVL K+ + E I+ G
Sbjct: 98 -QEKGFVNAVLRKIFQSEWIEPMG 120
>gi|170747459|ref|YP_001753719.1| Fmu (Sun) domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170653981|gb|ACB23036.1| Fmu (Sun) domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 459
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
R AA+QA+ +IG + + A+ D R I
Sbjct: 27 ATRRAAMQAV--ASLIGQERPPALDDALAQAIRAE-------ALAPADAGLARAIAVATF 77
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD- 136
R I +++ L ++ + A I +VP + V +A
Sbjct: 78 RRYGLIRAALAARLERGLPAAKPQLTALL---ATATAQILDLAVPDHAAVDLAVRLAKAD 134
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
+NAVL +V+R+
Sbjct: 135 TRTAHLAGLVNAVLRRVARER 155
>gi|26553613|ref|NP_757547.1| transcription termination factor N-utilization substance protein B
[Mycoplasma penetrans HF-2]
gi|26453619|dbj|BAC43951.1| transcription termination factor N-utilization substance protein B
[Mycoplasma penetrans HF-2]
Length = 149
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 1 MTIQDNKKDL---KLSHRRGIA----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADT 53
M++ + K ++ K+ +++ I R+A + +Y I+ + I ++
Sbjct: 1 MSLNNKKTNIANNKIENKQTITQWKKRVACFRFIYSTLIMNLGDKDCILKFNE------- 53
Query: 54 ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL 113
+ D +I + KQ+I I L E+W RL+ + SI+
Sbjct: 54 ---ELAELKDKD---IAKVIAFYIKNKQNIKSRIKPLLKEEWEIDRLNKVDLSIIMEAFC 107
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
E + ++II + + + + + KFIN +LDK+
Sbjct: 108 EFHTLD-IDRKIIIDQAIVTSKRYSENNSYKFINFILDKLL 147
>gi|33242357|ref|NP_877298.1| transcription antitermination protein NusB [Chlamydophila
pneumoniae TW-183]
gi|33236868|gb|AAP98955.1| hypothetical protein CpB1026 [Chlamydophila pneumoniae TW-183]
Length = 131
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 12/140 (8%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
+Q LY +D+ + ++ + + + V LE K
Sbjct: 1 MQMLYALDMAPSAEDSLVPLLMSQTAVSQKHVLVALNQTKSILE------------KSQE 48
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
LI + SF LD++ ++LR + E + ++I+E + + F Y +
Sbjct: 49 LDLIIGNALKNKSFDSLDLVEKNVLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEAC 108
Query: 144 KFINAVLDKVSRKEEIKRSG 163
FI A+L+ + + +
Sbjct: 109 PFIQAILNDIFTDSSLNENS 128
>gi|328950801|ref|YP_004368136.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
gi|328451125|gb|AEB12026.1| NusB/RsmB/TIM44 [Marinithermus hydrothermalis DSM 14884]
Length = 417
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 17/135 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L + G + + D + +G +
Sbjct: 15 ARGLALHVL-EAVARGQYAQPTLDRALQN-----------TRLSPEDRGLATHLTYGTLR 62
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+++D L++ L + LRAG E + V + +V
Sbjct: 63 HLRYLDHLLAPHLNAPHHL---PPPVRWALRAGAYERLFLEHPAYAV-VHSWVEETKRR- 117
Query: 139 YGDEPKFINAVLDKV 153
NAVL +V
Sbjct: 118 APRLAGLTNAVLRRV 132
>gi|159902549|ref|YP_001549893.1| transcription antitermination protein NusB [Prochlorococcus marinus
str. MIT 9211]
gi|159887725|gb|ABX07939.1| Antitermination protein NusB [Prochlorococcus marinus str. MIT
9211]
Length = 211
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
E + V+ Q I+L + + W RL I ILR +++ + P+ V
Sbjct: 117 REDAIQRVSLVLQNLQSINLNLDEVMDG-WRLKRLPRIDQDILRLAYIDI-HILNAPIAV 174
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+E V + + + + IN +L ++ + I
Sbjct: 175 ACNEAVNLGNKYSDKQGRRMINGILRRLQNSDSIN 209
>gi|197294848|ref|YP_001799389.1| Transcription termination factor [Candidatus Phytoplasma
australiense]
gi|171854175|emb|CAM12169.1| Transcription termination factor [Candidatus Phytoplasma
australiense]
Length = 138
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 29/157 (18%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+ K + + R+ ++ LYQ D + + E
Sbjct: 3 NHKRFKKSRLLRIKMMKLLYQYDF------------------------YSNNLKKISQEK 38
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ ++ + ID +I + L + +RL+ + +I+R EL+E P +II
Sbjct: 39 LQSDFEKIIMKLPFIDEIIINNL-YNYKLNRLNKVDKAIIRLATFELLENK-TPYALIID 96
Query: 129 EYVCIAHDFFY---GDEPKFINAVLDKVSRKEEIKRS 162
E V + F + KF N +LDK+ ++ EIK +
Sbjct: 97 EAVELTKQFCNLHNEKQHKFNNKLLDKIHKQLEIKET 133
>gi|146278958|ref|YP_001169117.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
17025]
gi|145557199|gb|ABP71812.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17025]
Length = 422
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 25/151 (16%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEI-------ISEYETYRFCADTELDVESVYLHV 64
+ +RR A + G E + R +
Sbjct: 1 MIYRRRAA-----------EQGGGMADEARGMAVALLDAVLGERRLLSQAVGELPSAGPA 49
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
+ + + + D L+S L + + +ILR V+E+ + P
Sbjct: 50 ERARAQRLALTALRHLDPADRLLSPHLRKAPPL-----TVRNILRLAVVEMAVEGAAPHG 104
Query: 125 VIISEYVCIAHD-FFYGDEPKFINAVLDKVS 154
V ++ V +A +NAVL K++
Sbjct: 105 V-VNAAVDLARRGRRTQHLAGLVNAVLRKIA 134
>gi|89256456|ref|YP_513818.1| Sun protein [Francisella tularensis subsp. holarctica LVS]
gi|167010375|ref|ZP_02275306.1| ribosomal RNA small subunit methyltransferase B [Francisella
tularensis subsp. holarctica FSC200]
gi|254367791|ref|ZP_04983812.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
tularensis subsp. holarctica 257]
gi|290953007|ref|ZP_06557628.1| Sun protein [Francisella tularensis subsp. holarctica URFT1]
gi|295313773|ref|ZP_06804347.1| Sun protein [Francisella tularensis subsp. holarctica URFT1]
gi|89144287|emb|CAJ79570.1| Sun protein [Francisella tularensis subsp. holarctica LVS]
gi|134253602|gb|EBA52696.1| tRNA and rRNA cytosine-C5-methylase, sun protein [Francisella
tularensis subsp. holarctica 257]
Length = 158
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ +I+ LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKIIALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V K +N +L +++R E
Sbjct: 73 -VLIMLGALHIFEIKQPYYATINETVAACKVLKIIWAKKLVNRILREMTRNIE 124
>gi|269114895|ref|YP_003302658.1| N utilization NusB-like protein [Mycoplasma hominis]
gi|268322520|emb|CAX37255.1| N utilization substance protein B homolog(Protein nusB) [Mycoplasma
hominis ATCC 23114]
Length = 157
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 23/162 (14%)
Query: 1 MTIQDNKKDLKLSHR------RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTE 54
M + K + R + AR+ + +YQ ++ + E
Sbjct: 1 MNNDSSSKISEKDKRILFLLNKYKARMHIINCIYQSELFNKNL----------SIQEILE 50
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
E+ ++E + + + + ++E W ++R+ + +I+ G E
Sbjct: 51 NCGENQLNANEIE----SLKIIEAKYDVFTRIAKKFISEDWEWNRILPLSRAIIIYGEYE 106
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
L+ V+I+E V I+ + ++ KFIN VLD VS+
Sbjct: 107 LLFND---PRVVINEMVNISKIYSPNNDYKFINKVLDLVSKN 145
>gi|309378544|emb|CBX22816.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 419
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ E
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|225075469|ref|ZP_03718668.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
gi|224953188|gb|EEG34397.1| hypothetical protein NEIFLAOT_00474 [Neisseria flavescens
NRL30031/H210]
Length = 419
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + ++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLGQMLKKPID----NPQLESLLLAAMYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQFRSFANAILRRFLRERD 129
>gi|194099888|ref|YP_002003025.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
gi|240124641|ref|ZP_04737527.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
SK-92-679]
gi|193935178|gb|ACF31002.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
NCCP11945]
Length = 417
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 70
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 71 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 127
>gi|240124490|ref|ZP_04737446.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
Length = 417
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 70
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 71 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 127
>gi|148238346|ref|YP_001223733.1| transcription antitermination protein NusB [Synechococcus sp. WH
7803]
gi|147846885|emb|CAK22436.1| Transcription termination factor, NusB [Synechococcus sp. WH 7803]
Length = 210
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 5/120 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S ++++ + + + I V+D + +D + S + E
Sbjct: 88 TSAEQVLNGLSASLELPRLLALADQEMVQKE---AMRRIQLVLDARPSLDDQLDSVM-EG 143
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
W SRL I ILR V++L P V +E V +A+ + + IN VL ++
Sbjct: 144 WRLSRLPRIDRDILRLAVVDLQSMK-TPASVACNEAVELANRYSDEQGRRMINGVLRRLQ 202
>gi|304320686|ref|YP_003854329.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula
bermudensis HTCC2503]
gi|303299588|gb|ADM09187.1| tRNA and rRNA cytosine-C5-methylase-like protein [Parvularcula
bermudensis HTCC2503]
Length = 455
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ L I G + ++E E + D + R +I V+
Sbjct: 30 ARRAALDILLAI-RRGQALDMAMAESEAF-----------EDLEGADRGFARTLIMAVLR 77
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ +D + L + ++LR +++ VP + V +A +
Sbjct: 78 RQNTLDEAYGTFLDR--PLKSTQGTVITLLRLAAAQIL-LLGVPPHAATATTVDLAKERR 134
Query: 139 YG-DEPKFINAVLDKVSRK 156
K +NA+ ++ K
Sbjct: 135 DSAGFAKLLNALCRRMVEK 153
>gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup]
gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup]
Length = 454
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 8/120 (6%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I +S L + L +L
Sbjct: 42 DNEHGHPQYLKLSQRDRLLCRAILTASLRHRGQITAALSRLLAR--PLPSQALSLQHLLH 99
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCVS 166
V +++ +P I V +A +F +NA+L ++R+ R S
Sbjct: 100 ISVAQILYLD-IPDHAAIDLAVRVAK--LDPRMRRFSGVVNALLRNIAREAVSLRQQIPS 156
>gi|240116730|ref|ZP_04730792.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|240118952|ref|ZP_04733014.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
Length = 417
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 70
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 71 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 127
>gi|254373278|ref|ZP_04988766.1| sun protein [Francisella tularensis subsp. novicida GA99-3549]
gi|151571004|gb|EDN36658.1| sun protein [Francisella novicida GA99-3549]
Length = 426
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 6/113 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + V+ L D + +++ + ++ + + LT+K
Sbjct: 18 KYSLLTIEQKLVKLNLLEQDKSFIKLLCYEFFRHYYSLEKITALYLTQKTKVKAK----- 72
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L I P I+E V D K +N +L +++R E
Sbjct: 73 -VLIMLGALQIFEIKQPYYATINETVAACKDLKIIWAKKLVNRILREITRNIE 124
>gi|59802189|ref|YP_208901.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|59719084|gb|AAW90489.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|312173998|emb|CBX82251.1| Ribosomal RNA small subunit methyltransferase B [Erwinia amylovora
ATCC BAA-2158]
Length = 429
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + +GV+ ++ +IS ++ + + + ++ G+ +L+ +
Sbjct: 37 DDKDAALVQELCYGVLRTLPQLEWVISKLMSCPMTGKQRAIHF--LIMVGLYQLMFTR-I 93
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P ++E V A IN VL +
Sbjct: 94 PPHAALAETVEGAVALKRPQLKGLINGVLRQF 125
>gi|239997893|ref|ZP_04717817.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268593745|ref|ZP_06127912.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268683215|ref|ZP_06150077.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|268547134|gb|EEZ42552.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268623499|gb|EEZ55899.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|254494751|ref|ZP_05107922.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|226513791|gb|EEH63136.1| 16S RNA methyltransferase [Neisseria gonorrhoeae 1291]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
shibae DFL 12]
gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
shibae DFL 12]
Length = 443
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
++SE + + + + + GV+ + D ++ L
Sbjct: 20 VLSERMSLADQTAHPKGPFAECAPAERARAQRLATGVLRHLRTCDQMLGPHLRMPPY--- 76
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVS 154
+ +ILR G EL P V + V +A P +NAVL KV+
Sbjct: 77 --PAIHNILRLGAYELCALGEAPHGV-VHAAVDLARAEDPQSRAPGLVNAVLRKVA 129
>gi|240081718|ref|ZP_04726261.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268597816|ref|ZP_06131983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268683121|ref|ZP_06149983.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268551604|gb|EEZ46623.1| 16S RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268623405|gb|EEZ55805.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|317165348|gb|ADV08889.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|260439509|ref|ZP_05793325.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268602401|ref|ZP_06136568.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268604663|ref|ZP_06138830.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291042746|ref|ZP_06568487.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
gi|268586532|gb|EEZ51208.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|268588794|gb|EEZ53470.1| 16S RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|291013180|gb|EFE05146.1| 16S RNA methyltransferase [Neisseria gonorrhoeae DGI2]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|291288639|ref|YP_003505455.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
gi|290885799|gb|ADD69499.1| Fmu (Sun) domain protein [Denitrovibrio acetiphilus DSM 12809]
Length = 379
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 12/128 (9%)
Query: 32 IIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCL 91
+ + ++Y E E + +R I I+ +
Sbjct: 1 MADRYRKRLFDVLKSYYKGVLREDYFE---DSAEQRLYRKIYFETFRHLGFIEKCLDKLY 57
Query: 92 TEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLD 151
T L + L G +++ +P ++E V + ++ F+NAVL
Sbjct: 58 T-----EMPGPELRAALALGTCQILFMDDIPDYAAVNESVILVQM----NKRSFVNAVLR 108
Query: 152 KVSRKEEI 159
V R++E
Sbjct: 109 NVGRRKEE 116
>gi|313111462|ref|ZP_07797263.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
gi|310883765|gb|EFQ42359.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
Length = 434
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 16/140 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
RLAA QAL + S + + D + + G
Sbjct: 4 RLAACQALAAVLAGRASLSCALPPQLD-------------KVAPRDRGLTQELAFGAARW 50
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ + L + + F D + ++L G+ +L+ +P I E V A
Sbjct: 51 QPRLQAL--AARLLQKPFKAADTDIHALLLIGLYQLLYTR-IPPHAAIGETVGCADKLKK 107
Query: 140 GDEPKFINAVLDKVSRKEEI 159
G +NAVL + R+ E
Sbjct: 108 GWAKGVLNAVLRRAQREGET 127
>gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1]
gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1]
Length = 425
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
+R A + L ++ + +++ + I+HG +
Sbjct: 8 NSRKIAFEILKKVFKNKSFSNILLN------------DVSKMPISDKFKNLIFAIVHGTI 55
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ L+ + + ++ + +L + +L ++P +++E V IA
Sbjct: 56 TNQI----LLDHVSRKLIDVKKTNIDIQILLWMSIYQLRFLKTIPQYAVVNESVMIAKS- 110
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
+NA L KV + EE
Sbjct: 111 VNHKFSGLLNACLKKVIKNEEE 132
>gi|307543963|ref|YP_003896442.1| Sun protein [Halomonas elongata DSM 2581]
gi|307215987|emb|CBV41257.1| K03500 Sun protein [Halomonas elongata DSM 2581]
Length = 447
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
E + D F+ + G ++ L + F D + ++L G+ +L+
Sbjct: 42 DEHQVVARDRGLFKELCFGTCRALPRLEALAGKL--LEKPFKTRDADIQALLLVGIYQLL 99
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
VP + E A + +N L ++ R+
Sbjct: 100 YLR-VPAHAAVGETAGAARLLSKAWATRVLNGCLRRLQRE 138
>gi|240017576|ref|ZP_04724116.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae FA6140]
gi|240113994|ref|ZP_04728484.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|240122197|ref|ZP_04735159.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 417
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 70
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 71 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 127
>gi|2766598|gb|AAB95441.1| NUSB [Shigella flexneri]
Length = 101
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AVQALY + ++ ++ E VD+ +FR ++ GV +
Sbjct: 11 ECAVQALYSWQLSQNDIADVEYQFLA-----------EQDVKDVDVLYFRELLAGVATKT 59
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
++D L+ L+ L + ++LR + EL + VP +
Sbjct: 60 AYLDGLMKPYLSRL--LEELGQVEKAVLRIALYELSKRSDVPYK 101
>gi|298292785|ref|YP_003694724.1| sun protein [Starkeya novella DSM 506]
gi|296929296|gb|ADH90105.1| sun protein [Starkeya novella DSM 506]
Length = 446
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query: 44 YETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMI 103
E R + + D R+I + + + LI S L
Sbjct: 37 LEKGRPLEEALERLTRELDERDRGLARMIAATALRKFGTLRALIGSLLERGLPEK--AGR 94
Query: 104 LCSILRAGVLELIECHSVPVEVIISEYVCIA-HDFFYGDEPKFINAVLDKVSRKEEI 159
+ ++L G +++ VP + V +A +NAVL +V+R+ +
Sbjct: 95 VETLLVTGAAQILFMD-VPDHAAVDTSVALAAESPASAGFKGLVNAVLRRVAREGKA 150
>gi|240015126|ref|ZP_04722039.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae DGI18]
gi|268600059|ref|ZP_06134226.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268584190|gb|EEZ48866.1| 16S RNA methyltransferase [Neisseria gonorrhoeae MS11]
Length = 419
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|313678447|ref|YP_004056187.1| NusB family protein [Mycoplasma bovis PG45]
gi|312950674|gb|ADR25269.1| NusB family protein [Mycoplasma bovis PG45]
Length = 139
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R RL + +Y+ +++G + + S +D E F+
Sbjct: 1 MKSRRNYRLGIISVIYKYELLGEKLS---------------SDQIFSEESDIDNEQFKQ- 44
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + + I L + ++++L ++ +IL EL S+ +V+I+E V
Sbjct: 45 LELISLNYDYYQKTILKFLNQNTAWTKLPALVRAILINTTHELF---SITPKVVINEAVE 101
Query: 133 IAHDFFYGDE--PKFINAVLDKVSR 155
I F+ + K +NA++ + +
Sbjct: 102 ITKYFYDTESNFYKLVNAIVQNIYK 126
>gi|240129165|ref|ZP_04741826.1| putative 16S RNA methyltransferase [Neisseria gonorrhoeae
SK-93-1035]
Length = 417
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 21 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLID---- 70
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 71 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 127
>gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative
[Maritimibacter alkaliphilus HTCC2654]
gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative
[Rhodobacterales bacterium HTCC2654]
Length = 420
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 10/132 (7%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
+ E R + D + ++ D ++ L
Sbjct: 13 LDLMGDVMEHGRLLPEVLPRRLEKLAPEDRARTQRLVATAFRVMDRADRVLGPHLR---- 68
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-FFYGDEPKFINAVLDKVSR 155
R + + +ILR V E+ E + P V ++ V +A +NA+L KV
Sbjct: 69 -KRPTLRIHNILRLSVAEICELGAAPHGV-VNTAVELARADKKTAGMAGLVNAILRKV-- 124
Query: 156 KEEIKRSGCVSA 167
+ + +
Sbjct: 125 -DPAGWAALPTP 135
>gi|304388913|ref|ZP_07370960.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|304337047|gb|EFM03234.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ATCC 13091]
gi|325203231|gb|ADY98684.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240355]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|255067827|ref|ZP_05319682.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
gi|255047918|gb|EET43382.1| ribosomal RNA small subunit methyltransferase B [Neisseria sicca
ATCC 29256]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 8/133 (6%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLH---VDLEWFRVIIHGVMDRKQHIDL 85
+ + + I+ R D + + + + + I +G +
Sbjct: 2 SMSLAQKLAADSIAAVAEGRNLQDVLAQIRAAHPELTVQENGALQDIAYGCQRYLGSLKH 61
Query: 86 LISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF 145
+++ L + + L S+L A + +L + P +++E V G F
Sbjct: 62 MLAQMLKKPID----NPQLESLLLAAMYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSF 116
Query: 146 INAVLDKVSRKEE 158
NA+L + R+ +
Sbjct: 117 ANAILRRFLRERD 129
>gi|325145434|gb|EGC67710.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240013]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|261391650|emb|CAX49098.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis 8013]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|161870942|ref|YP_001600122.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
gi|161596495|gb|ABX74155.1| 16S RNA methyltransferase [Neisseria meningitidis 053442]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|293398234|ref|ZP_06642439.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
gi|291611497|gb|EFF40567.1| ribosomal RNA small subunit methyltransferase B [Neisseria
gonorrhoeae F62]
Length = 419
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ +
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
capsulatus SB 1003]
gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter
capsulatus SB 1003]
Length = 421
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 10/127 (7%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
R + + D + I + D ++ L L
Sbjct: 19 LQERLTLAEQAGELAALAPPDRARAQRIALATLRNLTRADAMLKPHLR-----KAPPPDL 73
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFF--YGDEPKFINAVLDKVSRKEEIKRS 162
+LR G +E+ P V V +A INAVL K++ + R
Sbjct: 74 HVLLRLGTVEICALGEAPHGVT-DALVTLARSGGQKTEGFAGLINAVLRKIA--SDTDRW 130
Query: 163 GCVSAIT 169
+
Sbjct: 131 ARLDPPA 137
>gi|268687548|ref|ZP_06154410.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268627832|gb|EEZ60232.1| 16S RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 419
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPQLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKLID---- 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P +++E V G F NAVL + R+ E
Sbjct: 73 NPQLESLLLAALYQLHYTRNAP-HAVVNEAVESIAKIGRGQYRSFANAVLRRFLRERE 129
>gi|259417637|ref|ZP_05741556.1| Fmu [Silicibacter sp. TrichCH4B]
gi|259346543|gb|EEW58357.1| Fmu [Silicibacter sp. TrichCH4B]
Length = 436
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 25/167 (14%)
Query: 1 MTIQDNKKDLKLSHRR----GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELD 56
M ++ R AR AAV L A+ +
Sbjct: 1 MDKPIPDQEPSPMSDRPTSASDARRAAVTLL-------------DKVLGEGLLLAECQTQ 47
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
V D + + V+ + D +++ L + + + LR G +EL
Sbjct: 48 VLERLEPADRARAQRLALEVLRSLERADRVLAKHLR-----KPPALHVRNALRLGTVEL- 101
Query: 117 ECHSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
C ++++ V + A + +NAVL KV+ + +
Sbjct: 102 -CSGGAAHGVVNDIVNLVARHRRHAQLKGLVNAVLRKVATDGPTEWA 147
>gi|313667408|ref|YP_004047692.1| SUN-family protein [Neisseria lactamica ST-640]
gi|313004870|emb|CBN86296.1| SUN-family protein [Neisseria lactamica 020-06]
Length = 419
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 ISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRL 100
+ + + A +L + D+ + G + +++ L +
Sbjct: 23 LQDVLAHIRAAHPDLTAQENGALQDIAY------GCQRYLGSLKHMLAQMLKKPI----G 72
Query: 101 DMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ L S+L A + +L + P V ++E V G F NAVL + R+ +
Sbjct: 73 NPQLESLLLAALYQLHYTRNAPHAV-VNEAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|308388330|gb|ADO30650.1| rsmB 16S RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 419
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|256825115|ref|YP_003149075.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
gi|256688508|gb|ACV06310.1| tRNA/rRNA cytosine-C5-methylase [Kytococcus sedentarius DSM 20547]
Length = 502
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 3/122 (2%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + D + + G + ++ DL+I+ + LD L
Sbjct: 47 AYANLELPHVLRRFRLAGRDAAFATELAFGTVRQQGLYDLVIAR--ATGRAVDTLDPELM 104
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
LR G + + VP + V +A K +NA + +++ K+ V
Sbjct: 105 RTLRLGAHQALSMR-VPPHAAADQTVALARWVNGAGPAKLVNAAMHRMTEKDRETWVAEV 163
Query: 166 SA 167
+
Sbjct: 164 TE 165
>gi|254476801|ref|ZP_05090187.1| Fmu [Ruegeria sp. R11]
gi|214031044|gb|EEB71879.1| Fmu [Ruegeria sp. R11]
Length = 420
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 20/151 (13%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
AR A+ L Q+ G +E + D + +
Sbjct: 1 MSNGTHARRRAIYLLDQVLGEGRLLSECYA------------AGALDKLAPEDRARAQRL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ + D ++ L + ++ + LR G +EL + +++E V
Sbjct: 49 AADTLRNLERADRVLQKHLKKSTPL-----MVHNALRIGTVELCQ--GGAAHGVVNEMVN 101
Query: 133 I-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I A +G +NAVL KV+ + + +
Sbjct: 102 IVAAHKRHGKLKGLVNAVLRKVADQGPTEWA 132
>gi|229587594|ref|YP_002869713.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
gi|229359460|emb|CAY46301.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
Length = 436
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + G + + L S + F D + ++L G+ +L+
Sbjct: 30 DKVEDRDRGFTQDLAFGTARWQPRLSAL--SAKLLQKPFKAADADVEALLLVGLYQLLYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP I E V A +NAVL + R+ E
Sbjct: 88 R-VPAHAAIGETVGCADKLKKPWAKALLNAVLRRAQRESEA 127
>gi|325129148|gb|EGC51996.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis N1568]
Length = 419
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAILRRFLRERD 129
>gi|256545255|ref|ZP_05472620.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
51170]
gi|256399082|gb|EEU12694.1| N utilization substance protein B [Anaerococcus vaginalis ATCC
51170]
Length = 58
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ + SIL V E+ +P+ V I+E V IA ++ D KFIN+VL K++ K +
Sbjct: 1 MAKVDRSILFLSVNEMENLD-IPISVSINEAVNIAKEYSTSDGYKFINSVLGKIAEKRK 58
>gi|240047408|ref|YP_002960796.1| hypothetical protein MCJ_002820 [Mycoplasma conjunctivae HRC/581]
gi|239984980|emb|CAT04973.1| HYPOTHETICAL PROTEIN MCJ_002820 [Mycoplasma conjunctivae]
Length = 133
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 21/142 (14%)
Query: 22 AAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQ 81
A + LYQ +++ + ++ + ++ + +
Sbjct: 2 AVISLLYQSELLEEQIN-VGQIFQDHPELDSEQI---------------KMFKFIAKNYS 45
Query: 82 HIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF--Y 139
+ LI++ L +W + R+ + +IL G+ EL ++I+E + I+ +F
Sbjct: 46 LLQKLIAAHLNSQWQWERILPLNRAILLYGISELFFSEH---RIVINEMIEISKEFTADG 102
Query: 140 GDEPKFINAVLDKVSRKEEIKR 161
+ FINAV++ V + + K+
Sbjct: 103 DKDYGFINAVIENVYQYLKRKK 124
>gi|149375620|ref|ZP_01893389.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
gi|149360022|gb|EDM48477.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter algicola
DG893]
Length = 433
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 39/133 (29%), Gaps = 3/133 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
++ E + + + + + +G +D + + L +
Sbjct: 12 AARVMQSVENGQSLSQCLPHAMGDVADNERPPLQALCYGTCRWFHRLDGELQARLNK--P 69
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ + ++ ++ + +L ++ +E V +N VL R+
Sbjct: 70 LRKSNRVVHHLMLVALFQLRFSQQATYAIL-NETVEACRALDKPHLTGLVNGVLRAAERE 128
Query: 157 EEIKRSGCVSAIT 169
E + +
Sbjct: 129 GEPPLADEAGRFS 141
>gi|121633990|ref|YP_974235.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|120865696|emb|CAM09423.1| SUN-family protein [Neisseria meningitidis FAM18]
gi|254671147|emb|CBA08200.1| Sun protein [Neisseria meningitidis alpha153]
gi|325133179|gb|EGC55850.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M6190]
gi|325138791|gb|EGC61343.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis ES14902]
gi|325143273|gb|EGC65611.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis 961-5945]
gi|325197401|gb|ADY92857.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis G2136]
Length = 419
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P V ++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNAPHAV-VN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAILRRFLRERD 129
>gi|312958118|ref|ZP_07772641.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
gi|311287549|gb|EFQ66107.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
Length = 436
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + G + + L + + F D + ++L G+ +L+
Sbjct: 30 DKVEDRDRGFTQDLAFGTARWQPRLSALAAKL--LQKPFKAADADVEALLLVGLYQLLYT 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
VP I E V A +NAVL + R+ E
Sbjct: 88 R-VPAHAAIGETVGCADKLKKPWAKALLNAVLRRAQRESEA 127
>gi|308177500|ref|YP_003916906.1| transcription antitermination factor NusB [Arthrobacter
arilaitensis Re117]
gi|307744963|emb|CBT75935.1| transcription antitermination factor NusB [Arthrobacter
arilaitensis Re117]
Length = 136
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHI 83
++ L++ + + + E + II GVM I
Sbjct: 12 LEFLFEAEARDVNPLAVAISRRENSDIVLNE-------------YSLTIIEGVMAHLDRI 58
Query: 84 DLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEP 143
D ++ S + + W+ R+ + S LR GV EL+ VP V ++E V + + P
Sbjct: 59 DEVLESYVKD-WTIERMPAVDRSALRIGVWELLYNDDVPDAVAVAEAVVNVRELSTDESP 117
Query: 144 KFINAVLDKVS 154
+F+N VL ++
Sbjct: 118 EFVNGVLGRIQ 128
>gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
Regiella insecticola LSR1]
gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
Regiella insecticola LSR1]
Length = 390
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + ++ I + + IL +L G+ +LI
Sbjct: 34 QNISDKDRTLLQELCFGTLRVLPTLEFCIQQLMVRPMEGKK--RILHYLLMIGIYQLIYT 91
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P ++E V A + +N VL + R++
Sbjct: 92 R-IPAHAALAETVAGATTLKWPQLKGLVNGVLRQFQRQQ 129
>gi|269120809|ref|YP_003308986.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
gi|268614687|gb|ACZ09055.1| Fmu (Sun) domain protein [Sebaldella termitidis ATCC 33386]
Length = 437
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y Y + + IIH + ID LI + +
Sbjct: 20 KYSNLQLNYYFSTKGYNKKEKSFITNIIHTTLKNLIFIDYLIEKNASNIKKRK-----IK 74
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+LR V + + I+ E V A + F+N +L + +K + S
Sbjct: 75 QLLRISVAQFLLNKESDYSGIVFEAVETAKII-NKHQTGFVNVILRNIFQKYDQLVSEIP 133
>gi|261400037|ref|ZP_05986162.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
gi|269210259|gb|EEZ76714.1| ribosomal RNA small subunit methyltransferase B [Neisseria
lactamica ATCC 23970]
Length = 419
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P V ++
Sbjct: 45 LQDIAYGCQRYLGSLKHILAQMLKKPI----GNPQLESLLLAALYQLHYTRNAPHAV-VN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|87301561|ref|ZP_01084401.1| transcription antitermination protein NusB [Synechococcus sp. WH
5701]
gi|87283778|gb|EAQ75732.1| transcription antitermination protein NusB [Synechococcus sp. WH
5701]
Length = 204
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 41/123 (33%), Gaps = 2/123 (1%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
D + T + + E V+ + +D + +
Sbjct: 79 DHLQRGLTHAEQALNRLSASLELPRLLMLADQSEIREGAIARTRAVLQDRDALDSRLDAV 138
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ E W RL I ILR ++L P V +E V +A+ + + IN +L
Sbjct: 139 M-EGWRLGRLPRIDRDILRLAAVDLHTF-GTPAPVACNEAVELANRYSDDQGRRMINGIL 196
Query: 151 DKV 153
++
Sbjct: 197 RRL 199
>gi|330937254|gb|EGH41269.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. pisi str.
1704B]
Length = 390
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ F D + ++L G+ +L +P I E V A +NAVL
Sbjct: 12 QKPFKAADDDVEALLLVGLYQLFYSR-IPAHAAIGETVGCADKLKKPWAKGLLNAVLRNA 70
Query: 154 SRKEEI 159
R E
Sbjct: 71 QRDGEA 76
>gi|163739806|ref|ZP_02147213.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
gi|161386840|gb|EDQ11202.1| Fmu (Sun) [Phaeobacter gallaeciensis BS107]
Length = 421
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 21/152 (13%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S+ AR A+ L ++ G +E Y A +L E +
Sbjct: 1 MSNA-TQARRRAIHLLDEVLGEGKLLSEC------YAAGALDKLPAEE------RARTQR 47
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D ++ L + + + LR G +EL + +++E V
Sbjct: 48 LATDTLRNLERADRILQKHLKKATPL-----TVHNALRIGTVELCQ--GGAAHGVVNEMV 100
Query: 132 CI-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I + +G +NAVL KV+ + +
Sbjct: 101 DIVSRHRRHGKLKGLVNAVLRKVADHGPAEWA 132
>gi|86139371|ref|ZP_01057940.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. MED193]
gi|85823874|gb|EAQ44080.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. MED193]
Length = 420
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 20/147 (13%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR A+ L Q+ G E + D + +
Sbjct: 5 TQARRTAIYLLDQVLGEGRLLAECYA------------AGALERLTPEDRARAQRLTLQT 52
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135
+ + D ++ L + + ++LR G +EL ++++ V I +
Sbjct: 53 LRSLERADRVLQKHLKKATPL-----TVQNVLRLGTVELCH--GAAAHGVVNDMVAIISK 105
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
+G +NAVL KV+ + + + +
Sbjct: 106 HRRHGKLKGLVNAVLRKVAEQGQAEWA 132
>gi|254431134|ref|ZP_05044837.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
gi|197625587|gb|EDY38146.1| transcription antitermination protein NusB [Cyanobium sp. PCC 7001]
Length = 211
Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W +RL I ILR ++L + P V +E V +A+ + + IN VL +
Sbjct: 147 WRLTRLPRIDRDILRLAAVDLADF-HTPAPVACNEAVDLANRYSDERGRRMINGVLRRY 204
>gi|255318029|ref|ZP_05359274.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
radioresistens SK82]
gi|262380625|ref|ZP_06073779.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
radioresistens SH164]
gi|255304852|gb|EET84024.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
radioresistens SK82]
gi|262298071|gb|EEY85986.1| ribosomal RNA small subunit methyltransferase B [Acinetobacter
radioresistens SH164]
Length = 435
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D F ++ G + + + L LT+ + + ++ + L G+ +++
Sbjct: 39 NQVADRDRALFHELLLGTLRQWFALKSLALPLLTKPLN----NPVVETCLYLGLYQVLCT 94
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
P ISE V + +NA+L + +R+ E
Sbjct: 95 RIAP-HAAISETVTATKQLGFHPLSGVVNAILRRATRETE 133
>gi|15837530|ref|NP_298218.1| hypothetical protein XF0928 [Xylella fastidiosa 9a5c]
gi|46397049|sp|Q9PEV0|RSMB_XYLFA RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|9105851|gb|AAF83738.1|AE003932_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 421
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I V+ R+ + ++ L R D L +L G +L P
Sbjct: 33 DRALVEAICFAVLRRRPVYEAALTQWLAR--PLGRGDAQLRGLLMVGFAQLDVLKVPPYA 90
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ S V + F+NAVL + R+
Sbjct: 91 AL-SATVDACRVLGWPHRASFVNAVLRRAQRER 122
>gi|317968466|ref|ZP_07969856.1| transcription antitermination protein NusB [Synechococcus sp.
CB0205]
Length = 208
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 34 GCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTE 93
+ + + V+ + +D + + + E
Sbjct: 84 QDGLEHAENGLNRLSASLELPRLLMLSDQEEIRRGAIERARAVLSGRADLDQRLDAVM-E 142
Query: 94 KWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
W +RL I ILR +++ + + P V +E V +A+ + + IN VL +
Sbjct: 143 GWRLTRLPRIDRDILRLAAVDIEQF-NTPAPVACNEAVELANRYSDEQGRRMINGVLRRF 201
>gi|303233259|ref|ZP_07319931.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
gi|302480649|gb|EFL43737.1| NOL1/NOP2/sun family protein [Atopobium vaginae PB189-T1-4]
Length = 557
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 7/141 (4%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR +A L Q D +TT S Y + D + + G
Sbjct: 37 SPARRSAYALLVQYD--PLTTTAASSLPARYIKDILRSSKRLADVTPADRAFAEFLCMGS 94
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
+ +++ ++S + L +L EL+ V S+Y +A
Sbjct: 95 VGAYRYLCDVLSGYCKRFSHLEK---KLHVLLILASFELLYMEHEHYAVC-SQYAALARS 150
Query: 137 FFYGDEPKFINAVLDKVSRKE 157
++ VL + R+E
Sbjct: 151 I-QPRYVGLVSGVLHALIREE 170
>gi|296315160|ref|ZP_06865101.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
gi|296837969|gb|EFH21907.1| ribosomal RNA small subunit methyltransferase B [Neisseria
polysaccharea ATCC 43768]
Length = 419
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
+ E ++E + + + I +G + +++ L +
Sbjct: 11 ADSIEAVAEGRNLQDVLAQIRTAHPDLTAQENGALQDIAYGCQRYLGSLKHMLAQMLKKP 70
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ L S+L A + +L + P V ++E V G F NAVL +
Sbjct: 71 I----GNPQLESLLLAALYQLHYTRNAPHAV-VNEAVESIAKIGRGQYRSFANAVLRRFL 125
Query: 155 RKEE 158
R+ +
Sbjct: 126 RERD 129
>gi|325131147|gb|EGC53868.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis OX99.30304]
gi|325137171|gb|EGC59766.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M0579]
gi|325203053|gb|ADY98507.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis M01-240149]
gi|325207149|gb|ADZ02601.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis NZ-05/33]
Length = 419
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPI----GNPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|71898895|ref|ZP_00681062.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Ann-1]
gi|71731307|gb|EAO33371.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Ann-1]
Length = 429
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I V+ R+ + ++ L R D L +L G +L P
Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQLDVLKVPPYA 98
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ S V + F+NAVL + R+
Sbjct: 99 AL-SATVDACRVLGWPHRASFVNAVLRRAQRER 130
>gi|257125452|ref|YP_003163566.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b]
gi|257049391|gb|ACV38575.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b]
Length = 433
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 7/121 (5%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y + Y + + +++ V+ +ID LI + +
Sbjct: 22 KYSNIQLNYYFSKKNYTKKEKMFITNVVNIVIKNLIYIDYLIGKSVRNVKKRK-----IK 76
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+LR V +L S V I E IA + F+NA L + + +E
Sbjct: 77 QLLRISVAQLFFMESDNAGV-IFEAGEIAKIL-NAHQVGFVNAALQTILKNKEKFNEEIP 134
Query: 166 S 166
Sbjct: 135 K 135
>gi|15676040|ref|NP_273170.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|7225328|gb|AAF40571.1| 16S RNA methyltransferase [Neisseria meningitidis MC58]
gi|316985958|gb|EFV64897.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
gi|325141257|gb|EGC63756.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis CU385]
gi|325199326|gb|ADY94781.1| ribosomal RNA small subunit methyltransferase B [Neisseria
meningitidis H44/76]
Length = 419
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P V ++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPI----GNPQLESLLLAALYQLHYTRNAPHAV-VN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|221640599|ref|YP_002526861.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides KD131]
gi|221161380|gb|ACM02360.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides KD131]
Length = 410
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 7/125 (5%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+ G + T + + + + D+ + + + V+ D L++
Sbjct: 4 EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-FFYGDEPKFINAV 149
L + + +ILR +E+ + P V +S V +A +NAV
Sbjct: 64 LRKAPPL-----TVRNILRLATVEMAADGAAPHGV-VSSAVDLARRGRRTQHLAGLVNAV 117
Query: 150 LDKVS 154
L +++
Sbjct: 118 LRRIA 122
>gi|126463525|ref|YP_001044639.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides ATCC
17029]
gi|126105189|gb|ABN77867.1| Fmu (Sun) domain protein [Rhodobacter sphaeroides ATCC 17029]
Length = 410
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 7/125 (5%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
+ G + T + + + + D+ + + + V+ D L++
Sbjct: 4 EARGMAVTLLDAVLGEGKLLSQALADLPGTAAPAERARAQRLASSVLRHLGPADRLLAPH 63
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-FFYGDEPKFINAV 149
L + + +ILR +E+ + P V +S V +A +NAV
Sbjct: 64 LRKAPPL-----TVRNILRLATVEMAADGAAPHGV-VSSAVDLARRGRRTQHLAGLVNAV 117
Query: 150 LDKVS 154
L +++
Sbjct: 118 LRRIA 122
>gi|319785852|ref|YP_004145327.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
gi|317464364|gb|ADV26096.1| sun protein [Pseudoxanthomonas suwonensis 11-1]
Length = 451
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 15/152 (9%)
Query: 5 DNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHV 64
N + + R+ A + L + G S ++
Sbjct: 12 QNSRPERPLAPGVEVRVHAARVLDAVVNRGRSLKSELAPVLPRLAD------------PR 59
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D ++ + + + + + + D L ++L AG +L +P
Sbjct: 60 DRALLEAVVFAALRGRHRYEAALRGWMAK--PPGAGDGSLVALLLAGCAQLDAL-QLPAH 116
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ V A + +NA+L + R+
Sbjct: 117 AALDATVEAARALGRPHQAGLVNALLRRAQRE 148
>gi|269215462|ref|ZP_06159316.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
exigua ATCC 700122]
gi|269130949|gb|EEZ62024.1| putative Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Slackia
exigua ATCC 700122]
Length = 502
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 5/108 (4%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D+ + + GV +D I ++ + LR EL+
Sbjct: 97 EDIDPKDVAFATRLSKGVAATWGTLDEFIDRTMSSPDDIQA---DVRDALRVSAYELVFL 153
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
P V++ + V + F NAVL ++ + G
Sbjct: 154 -HKPPHVVVDQGVELVR-FVEPKAANLANAVLHRMVEAADDFPFGDPE 199
>gi|88809354|ref|ZP_01124862.1| transcription antitermination protein NusB [Synechococcus sp. WH
7805]
gi|88786573|gb|EAR17732.1| transcription antitermination protein NusB [Synechococcus sp. WH
7805]
Length = 210
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ V+D + +D + + E W SRL I ILR V++L P V S
Sbjct: 119 AMRRVQLVLDARASLDDQLDGVM-EGWRLSRLPRIDRDILRLAVVDLQTMK-TPASVACS 176
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVS 154
E V +A+ + + IN VL ++
Sbjct: 177 EAVELANRYSDEQGRRMINGVLRRLQ 202
>gi|254362113|ref|ZP_04978233.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261491771|ref|ZP_05988351.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495480|ref|ZP_05991927.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|153093674|gb|EDN74629.1| rRNA (cytosine-C(5)-)-methyltransferase [Mannheimia haemolytica
PHL213]
gi|261308814|gb|EEY10070.1| FMU protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312610|gb|EEY13733.1| FMU protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 448
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 36 STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW 95
S T I+ + + + D + DL + I GV ++ +I L +
Sbjct: 20 SATIILQVLDQGKSLSTLIPDAQKQLEPKDLPLVQEITFGVCRVLPRLESIIK--LLVEK 77
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
++ +L G+ +L+ VP + E V N VL + R
Sbjct: 78 PLKGKTRLVHCLLLVGLYQLLYMR-VPAHAAVDEVVNATKTLKLDSFRALTNGVLRRFLR 136
Query: 156 KEEI 159
++E
Sbjct: 137 EQEE 140
>gi|254672816|emb|CBA06959.1| Sun protein [Neisseria meningitidis alpha275]
Length = 419
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPI----GNPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NAVL + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAVLRRFLRERD 129
>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770 [Chlorella variabilis]
Length = 425
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
++ GV ++ +D ++ L ++LD + + LR G+ EL E + V I+
Sbjct: 9 VTELVSGVTRWRRRLDFSLTQLL-RGRDVAQLDAPVRNALRLGLYELAELKNATHGV-IN 66
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
YV + + N VL V+R E Q
Sbjct: 67 SYVDLVKSVQHQGAANATNGVLRNVARGLEAGTLPQPPRPAQ 108
>gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
hofstadii F0254]
gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
hofstadii F0254]
Length = 433
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y ++ Y + + +I+ V+ +ID LI + +
Sbjct: 22 KYSNIQLNYYFSKNNYTKKEKMFITNVINVVIKNLIYIDYLIGKSVRNVKKRK-----IK 76
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+LR V +L S V I E IA + F+NA L + + +E
Sbjct: 77 QLLRISVAQLFFMESDNAGV-IFEAGEIAKIL-NAHQAGFVNATLQTILKNKE 127
>gi|163757448|ref|ZP_02164537.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
phototrophica DFL-43]
gi|162284950|gb|EDQ35232.1| putative ribosomal RNA small subunit methyltransferase B [Hoeflea
phototrophica DFL-43]
Length = 446
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 12/144 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR AA + L + S ++ + D R I+ +
Sbjct: 15 AARQAATRLLAAVTESRASLDGLLDP--------AGGNPAFTGLGPQDRLLVRAILLSAL 66
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-D 136
+ ID I +T L +LR G +++ VP + V A+ D
Sbjct: 67 RHLRVIDAYIDELVTS--PLPEGAKALRQLLRVGAAQILFLD-VPDRAAVDLAVSQANGD 123
Query: 137 FFYGDEPKFINAVLDKVSRKEEIK 160
+NA+L ++ R++E +
Sbjct: 124 PRNRRFAGLVNALLRRMGREKESR 147
>gi|254472533|ref|ZP_05085933.1| SUN protein [Pseudovibrio sp. JE062]
gi|211958816|gb|EEA94016.1| SUN protein [Pseudovibrio sp. JE062]
Length = 415
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 4/113 (3%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
+ D R II + R+ I +I L ++
Sbjct: 3 LDCELDLNNGHPGYKRLEPNDRALVRAIIGTALRRRGQIQDVIDRFLDRPIPEKTGRVLD 62
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK-FINAVLDKVSRK 156
IL + +L SVP +S V +A K +NAVL + +R+
Sbjct: 63 --ILHVAMAQLFFM-SVPDHAAVSLAVTLAGRDGRAKPYKNLVNAVLRRATRE 112
>gi|313680062|ref|YP_004057801.1| nusb/rsmb/tim44 [Oceanithermus profundus DSM 14977]
gi|313152777|gb|ADR36628.1| NusB/RsmB/TIM44 [Oceanithermus profundus DSM 14977]
Length = 410
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+++G + R + ID + L + LRAG E +
Sbjct: 36 ELDPQAAGLATDLVYGTLRRLRWIDWSLEPLLEHPGRL---PEAVRWALRAGGYEKLFTP 92
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
P ++ +V + + +NAVL ++
Sbjct: 93 R-PAHASVNAWVEVVGRR-HPRLRGLVNAVLRRL 124
>gi|218282589|ref|ZP_03488827.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
gi|218216460|gb|EEC89998.1| hypothetical protein EUBIFOR_01409 [Eubacterium biforme DSM 3989]
Length = 397
Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D I +G + ++ S + ++L+ + +L +L+
Sbjct: 28 HEVDEKDRALATRIFYGTIQNYRYCKACWSKYVK-----NKLNPKMDVLLTMSTYQLLFL 82
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
VP I+++ V IA NAVL KV + E
Sbjct: 83 DKVPSYAIVNDAVNIAKKI-NMKYAGLTNAVLHKV-KPIETDNMA 125
>gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
sp. SXCC-1]
gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
sp. SXCC-1]
Length = 395
Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + V+ + +++ L + + +L GV +L+
Sbjct: 16 EPRDRAAAHRLAATVLRHMGTANEVLAPFLKREPP-----EPVRVVLLIGVAQLLFLD-T 69
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P ++ V +A +NAVL +V+
Sbjct: 70 PPHAAVATSVALARRRGLVPFAGLVNAVLRRVA 102
>gi|114767262|ref|ZP_01446112.1| ribosomal RNA small subunit methyltransferase B, putative
[Pelagibaca bermudensis HTCC2601]
gi|114540615|gb|EAU43687.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius sp. HTCC2601]
Length = 420
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + V+ + D L+ L + + ++LR G EL
Sbjct: 35 EAMPAPDRAAAQRMAQEVLRNLERCDRLLKPHLRKSPPL-----FVRNVLRLGAWELA-- 87
Query: 119 HSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++++ V I A D +NAVL K++ + K S
Sbjct: 88 TGGAAHGVVNDCVQIVAGDRKTQSMKGLVNAVLRKLTEEAPAKWS 132
>gi|260426788|ref|ZP_05780767.1| Fmu [Citreicella sp. SE45]
gi|260421280|gb|EEX14531.1| Fmu [Citreicella sp. SE45]
Length = 420
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AVQ L Q+ G +E + + + + V+
Sbjct: 7 ARGQAVQLLGQVLGQGRLLSEAM------------SGGAWDSLAPAERAAAQRLAQEVLR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ D ++ L + + ++LR G EL C +++E V +
Sbjct: 55 NLERCDRVLKPHLRKAPPL-----FVKNVLRLGAWEL--CTGGAAHGVVNEAVQLVGADR 107
Query: 139 YGDE-PKFINAVLDKVSRKEEIKRS 162
+NAVL K++ + + +
Sbjct: 108 KAHSMKGMVNAVLRKLAAEGPAQWT 132
>gi|254502120|ref|ZP_05114271.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
alexandrii DFL-11]
gi|222438191|gb|EEE44870.1| ribosomal RNA small subunit methyltransferase B [Labrenzia
alexandrii DFL-11]
Length = 468
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 41/151 (27%), Gaps = 12/151 (7%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + D R I +
Sbjct: 36 AARKVAADILGNVVHKKRPLDGELDMASGHSGFR--------ALAANDRALVRAIAGAAL 87
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-D 136
+ I ++ L ++ IL + ++ +P +S V A D
Sbjct: 88 RHRGEITEILGRLLDRDIPEKTGRVLD--ILHVAIAQMQFLD-IPDRAAVSLAVDHASMD 144
Query: 137 FFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+N VL ++ R+ + S +
Sbjct: 145 RRARPYKGLVNGVLRRLGRERDEITSDLDAP 175
>gi|218767200|ref|YP_002341712.1| SUN homolog [Neisseria meningitidis Z2491]
gi|121051208|emb|CAM07479.1| SUN homolog [Neisseria meningitidis Z2491]
gi|319411405|emb|CBY91816.1| ribosomal RNA small subunit methyltransferase B (rRNA
(cytosine-C(5)-)-methyltransferase; 16S rRNA m5C967
methyltransferase) [Neisseria meningitidis WUE 2594]
Length = 419
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + P +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPI----GNPQLESLLLAALYQLHYTRNAP-HAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAILRRFLRERD 129
>gi|87303174|ref|ZP_01085972.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
gi|87282341|gb|EAQ74301.1| Sun protein (Fmu protein) [Synechococcus sp. WH 5701]
Length = 447
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 44/148 (29%), Gaps = 14/148 (9%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + L Q G T + S D + G +
Sbjct: 12 EARRVAWRVL-QAVAAGAYTDLALERELRR-----------SPLAPADRGLATELACGAI 59
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
++ +D I + R L +L G+ +L+ VP +S V IA
Sbjct: 60 RQRALLDGWIDALGKVSA--ERQPPPLRWLLHLGLYQLLFTARVPASAAVSTTVEIAKRD 117
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCV 165
+N +L R+ + G
Sbjct: 118 CLARLAPVVNGLLRACLRRRQPLAPGAA 145
>gi|226942185|ref|YP_002797258.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii
DJ]
gi|226717112|gb|ACO76283.1| Fmu, rRNA SAM-dependent methyltransferase [Azotobacter vinelandii
DJ]
Length = 443
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + G + + L + + D + ++L G+ +L+
Sbjct: 31 EQVAPRDRALAQELAFGAARWQPRLAL--LAERLLRKPLKAADRDVEALLLIGLYQLLHT 88
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P I E V A +NAVL +V R+ E
Sbjct: 89 R-IPAHAAIGETVACAEQLRKPWAKALLNAVLRRVQREGEA 128
>gi|254282952|ref|ZP_04957920.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
gi|219679155|gb|EED35504.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium NOR51-B]
Length = 416
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+++ + ++ + S + + D + +++ G+ +L +
Sbjct: 23 RPLVMELVYSTLREWPLLEGI--SRQLLRKPLRKKDADVHALVLLGLQQLRGTR-IAHHA 79
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+SE V + + +N VL R+
Sbjct: 80 AVSETVAVCRELRKNWATGLVNGVLRTYQRQ 110
>gi|212695669|ref|ZP_03303797.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
7454]
gi|212677342|gb|EEB36949.1| hypothetical protein ANHYDRO_00186 [Anaerococcus hydrogenalis DSM
7454]
Length = 426
Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 43/116 (37%), Gaps = 4/116 (3%)
Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
Y+ T++ + D+ + I+GV++ K +++ +I K +
Sbjct: 12 YRICYKNEKSTDIINDIAREVSDISYITKNIYGVLENKLYLEYIIGKLSKIKIKKLDKKV 71
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+L + + I++E V + Y F+NAVL R EE
Sbjct: 72 LLILEIGIYNI---HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAVLRSYIRDEE 123
>gi|28199632|ref|NP_779946.1| hypothetical protein PD1761 [Xylella fastidiosa Temecula1]
gi|182682377|ref|YP_001830537.1| sun protein [Xylella fastidiosa M23]
gi|46396863|sp|Q87AR1|RSMB_XYLFT RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|28057747|gb|AAO29595.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|182632487|gb|ACB93263.1| sun protein [Xylella fastidiosa M23]
gi|307578659|gb|ADN62628.1| sun protein [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 431
Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I V+ R+ + ++ L R D L +L G +L P
Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQLDVLKVPPYA 98
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ S V + F+NAVL + R+
Sbjct: 99 AL-SATVDACRVLGWPHRVSFVNAVLRRAQRER 130
>gi|71276447|ref|ZP_00652723.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Dixon]
gi|71901280|ref|ZP_00683379.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Ann-1]
gi|170730998|ref|YP_001776431.1| Sun protein [Xylella fastidiosa M12]
gi|71162763|gb|EAO12489.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Dixon]
gi|71728971|gb|EAO31103.1| Fmu, rRNA SAM-dependent methyltransferase [Xylella fastidiosa
Ann-1]
gi|167965791|gb|ACA12801.1| Sun protein [Xylella fastidiosa M12]
Length = 429
Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I V+ R+ + ++ L R D L +L G +L P
Sbjct: 41 DRALVEAICFAVLRRRPVYEAALTRWLAR--PLGRGDAQLRGLLMVGFAQLDVLKVPPYA 98
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ S V + F+NAVL + R+
Sbjct: 99 AL-SATVDACRVLGWPHRVSFVNAVLRRAQRER 130
>gi|149917223|ref|ZP_01905722.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
pacifica SIR-1]
gi|149821830|gb|EDM81224.1| ribosomal RNA small subunit methyltransferase B [Plesiocystis
pacifica SIR-1]
Length = 453
Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 18/151 (11%)
Query: 12 LSHRRGIA-----RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
++ R + R AV+ L +I+ + I+SE D
Sbjct: 1 MARPRAKSPLPNPRRLAVRTLREIEQRQGFSNRILSEQLERF----------PDLDPRDR 50
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+++GV+ + +D + + + L +ILR E++E
Sbjct: 51 GLITTLVYGVLRHRGRLDAHLDAAADKPHKLK---GELRTILRVAAYEVLELDRPLPIAS 107
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
G I +L KV++ +
Sbjct: 108 AEASKAAKRIDPRGRLKGMIAKILAKVAKDK 138
>gi|83945706|ref|ZP_00958051.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633]
gi|83850907|gb|EAP88767.1| rRNA methyltransferase RsmB [Oceanicaulis alexandrii HTCC2633]
Length = 450
Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
A D + R I V+ R +D + L + ++ ILR
Sbjct: 46 GALAGRPEWKRMEPRDRAFARAIASAVIRRPIALDAALMQVLDK--PLPDEEVRAHLILR 103
Query: 110 AGVLELIECHSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEE 158
G E + P + +V + A D NAVL +V + +
Sbjct: 104 CGAAERLILD-TPAHAAVDAWVSLMAQDRHTARFKNLANAVLRRVVDQGK 152
>gi|297184029|gb|ADI20149.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
proteobacterium EB080_L06A09]
Length = 430
Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVIIHG 75
AR AAV+ L + +R D +S + + +
Sbjct: 8 AREAAVRLL-------------HAVLLEHRLLIDIVNGEDSLLIDLEPSERARAQSLAMT 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ID+++ LT + L +ILR E++ + + V +A
Sbjct: 55 TLRNLGPIDIVLKKYLT-----KKPPFALLNILRVSSAEML-VDGIAAHAAVDSAVTMAK 108
Query: 136 -DFFYGDEPKFINAVLDKVSRK 156
NAVL KV+ +
Sbjct: 109 RKHKTAHLKDLTNAVLRKVASE 130
>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
Length = 435
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ A L ++ G S T ++ + D + + + +GV+
Sbjct: 8 RIIATSVLVRVLGQGRSLTAVLPPAMAH-------------LPARDQAFTQTLCYGVLRW 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L R L L + +P +SE V A
Sbjct: 55 LPRLDYL---AQKILHKPLRARDRDLYALLLLGLYQLTELGIPSHAALSETVNAAESLGK 111
Query: 140 GDEPKFINAVLDKVSRKE 157
K +NA L R E
Sbjct: 112 PWAKKMLNATLRAYLRNE 129
>gi|17986519|ref|NP_539153.1| 16S rRNA m(5)C 967 methyltransferase [Brucella melitensis bv. 1
str. 16M]
gi|17982123|gb|AAL51417.1| 16S rRNA m(5)c 967 methyltransferase [Brucella melitensis bv. 1
str. 16M]
Length = 424
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D R I+ + + I+ I+ L + L +L V ++
Sbjct: 23 ALEPRDRALVRAILGSALHNRGSIERAINKRLDR--PLPENAVALKHLLHVAVAQIFYLD 80
Query: 120 SVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
+P + V A+ +NA+L +++R +E
Sbjct: 81 -LPDHSAVDLAVEAANSDPRNRKYAGLVNALLRRLARNKE 119
>gi|291612482|ref|YP_003522639.1| sun protein [Sideroxydans lithotrophicus ES-1]
gi|291582594|gb|ADE10252.1| sun protein [Sideroxydans lithotrophicus ES-1]
Length = 424
Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
L ES + + + +G + + ++ S L + +L S+L + +
Sbjct: 30 LRKESKLTAQEKGALQDLCYGTLRYYSRLAYMLDSLLQRPVR----EPLLGSLLMVAIYQ 85
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
L + VI+ + V A + +NAVL R++ + R
Sbjct: 86 LEHTKAGK-HVIVDQAVHAAKN-TNPAASGLVNAVLRNYLRRQSVLREAA 133
>gi|73666920|ref|YP_302936.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
gi|72394061|gb|AAZ68338.1| hypothetical protein Ecaj_0291 [Ehrlichia canis str. Jake]
Length = 148
Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+ + +I E+ + +D + I++ ++ I+ I++
Sbjct: 1 MIFNNYTINDI-----DNLIDYLYEMKEVLDLIQIDNQLLIKIMNTMLLTFNTINSTIAT 55
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
L EKWS R+++I SI++ V ELI C + +II+EYV IA E FINA+
Sbjct: 56 FLNEKWSIDRINLISLSIIKTAVCELI-CSNTDAVIIINEYVNIASHILEKTEVNFINAI 114
Query: 150 LDKV 153
L++V
Sbjct: 115 LNQV 118
>gi|182679035|ref|YP_001833181.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|182634918|gb|ACB95692.1| sun protein [Beijerinckia indica subsp. indica ATCC 9039]
Length = 463
Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
F ++ ++ + D R I+ + R I ++ L + R L
Sbjct: 51 LDDFFAPESNPEILAGLEPRDKALARSIVTVALRRLGTIRAALTGLLAQG--LPRQAPDL 108
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEE 158
IL +++ VP + V F +NAVL ++R E
Sbjct: 109 EWILLVAGAQILFLD-VPDHAAVDLAVRATR--LDPKSTPFAPLVNAVLRNLARGRE 162
>gi|114328418|ref|YP_745575.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
CGDNIH1]
gi|114316592|gb|ABI62652.1| 16S rRNA m(5)C 967 methyltransferase [Granulibacter bethesdensis
CGDNIH1]
Length = 452
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 6/139 (4%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
+D + +++ + L+ D + + R ID ++
Sbjct: 31 AMDPTRDAACRLLNAVLEQHRSLEEALNALPPMEPRDRAAAHRLAAATLRRLGTIDAVLE 90
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
L + + ILR G L+ P + V +A INA
Sbjct: 91 PFLRREPP-----APVRDILRLGAAGLLFLD-TPPHAAVGTAVDLARQLRLAPFTGLINA 144
Query: 149 VLDKVSRKEEIKRSGCVSA 167
VL KV+ + +G S
Sbjct: 145 VLRKVATGGQEMLNGLDSP 163
>gi|99079930|ref|YP_612084.1| Fmu (Sun) [Ruegeria sp. TM1040]
gi|99036210|gb|ABF62822.1| Fmu (Sun) [Ruegeria sp. TM1040]
Length = 424
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 21/147 (14%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
AR AAV L ++ + + D + + V
Sbjct: 9 SDARRAAVALL-------------DKVLGEGLLLSECQTQILERLEPADRARAQRLALQV 55
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AH 135
+ + D +++ L + + + LR G +EL C ++++ V + A
Sbjct: 56 LRALERADRVLAKHLR-----KPPALHVRNALRLGTVEL--CSGGAAHGVVNDIVNLVAR 108
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
+G +NAVL KV+ + + +
Sbjct: 109 HRRHGQLKGLVNAVLRKVATEGPGEWA 135
>gi|257063705|ref|YP_003143377.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
20476]
gi|256791358|gb|ACV22028.1| tRNA/rRNA cytosine-C5-methylase [Slackia heliotrinireducens DSM
20476]
Length = 531
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D+ + + GV+ +D I+ L + LR EL+
Sbjct: 127 PMKPEDVAFATRLARGVVATSGALDDFINRNLYSPADIQP---NVRDALRVSAYELLYLK 183
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
V + + V + + NAVL K++R G V
Sbjct: 184 KDDY-VAVDQGVELV-AYVEPKARALANAVLRKMARTASRWPFGDVG 228
>gi|170741154|ref|YP_001769809.1| Fmu (Sun) domain-containing protein [Methylobacterium sp. 4-46]
gi|168195428|gb|ACA17375.1| Fmu (Sun) domain protein [Methylobacterium sp. 4-46]
Length = 447
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 18/155 (11%)
Query: 18 IARLAAVQALYQ--IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
AR A Y D++G + + + + DL R I
Sbjct: 13 AARRLA----YASVADLLGARSGTALDDVLDPAAS-------RAALPGPDLALARAIATA 61
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
I +++ L E L A I +V + V +A
Sbjct: 62 TFRHLGLIRHALAARLAEGLP---EGQPKLLALLATGAAQILVLNVQDHAAVDLAVRLAK 118
Query: 136 DFFY-GDEPKFINAVLDKVSRKE-EIKRSGCVSAI 168
+NAVL ++SR++ I R G +
Sbjct: 119 ADSGLRHLSGLVNAVLRRISREKAAILREGEADPL 153
>gi|261378986|ref|ZP_05983559.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
gi|269144601|gb|EEZ71019.1| ribosomal RNA small subunit methyltransferase B [Neisseria cinerea
ATCC 14685]
Length = 419
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I +G + +++ L + + L S+L A + +L + +++
Sbjct: 45 LQDIAYGCQRYLGSLKHMLAQMLKKPID----NPQLESLLLAALYQLHYTRNA-THAVVN 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
E V G F NA+L + R+ +
Sbjct: 100 EAVESIAKIGRGQYRSFANAILRRFLRERD 129
>gi|317050738|ref|YP_004111854.1| Fmu (Sun) domain-containing protein [Desulfurispirillum indicum S5]
gi|316945822|gb|ADU65298.1| Fmu (Sun) domain protein [Desulfurispirillum indicum S5]
Length = 417
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
FR ++ G + ++ ++ + L+ + ++L V +
Sbjct: 34 KLPPEQRGNFREMVSGAFRQLLLLESILKASCDR--PLRELEPFVKALLVLSVYRIYFLQ 91
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
V + E + + + F+N VL V+R +
Sbjct: 92 DPDYTV-VDEANGLC---AHDGQKSFVNGVLRNVTRYRKPLE 129
>gi|126730443|ref|ZP_01746254.1| ribosomal RNA small subunit methyltransferase B, putative
[Sagittula stellata E-37]
gi|126709176|gb|EBA08231.1| ribosomal RNA small subunit methyltransferase B, putative
[Sagittula stellata E-37]
Length = 413
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
ARLAAV L +R ++T+ D + + V
Sbjct: 5 SPARLAAVDLL-------------DMVLVQHRPLSETDRLD--RLAAPDRAAAQRLATEV 49
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA-H 135
+ + D ++ L + +ILR G EL C ++S+ V IA
Sbjct: 50 LRGLERADRVLKPHLR-----KAPAGRVMNILRLGATEL--CTGGAAHGVVSDCVEIAAR 102
Query: 136 DFFYGDEPKFINAVLDKVSRKEEIKRS 162
NAVL KV+ +
Sbjct: 103 GKRTQGAKGLANAVLRKVAESGPADWA 129
>gi|118591346|ref|ZP_01548744.1| SUN protein [Stappia aggregata IAM 12614]
gi|118436018|gb|EAV42661.1| SUN protein [Stappia aggregata IAM 12614]
Length = 458
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 20/177 (11%)
Query: 1 MTIQDNKKDLKLSHRRG--------IARLAAVQALYQIDIIGCSTTEIISEYETYRFCAD 52
MT + N K AR A L + + +
Sbjct: 1 MTKRPNNKQKPSGKPATEQAEKPGFAARKVAADILGNVVHKKRPLDGELDTASGHSGFR- 59
Query: 53 TELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGV 112
D R II + + I ++ L ++ IL +
Sbjct: 60 -------ALAANDRSLVRAIIGAALRHRGEIAEILDRLLDRPIPEKTGRVLD--ILHVAI 110
Query: 113 LELIECHSVPVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+++ +P +S V A D +N VL ++ R+ + + +A+
Sbjct: 111 AQMLFLD-IPDRAAVSLAVDHAGLDRRARPYKGLVNGVLRRLGRERDEVTADLDAAV 166
>gi|326405127|ref|YP_004285209.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
gi|325051989|dbj|BAJ82327.1| RNA methyltransferase [Acidiphilium multivorum AIU301]
Length = 418
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ R +D ++ L + ILR G +L P +S V +AH
Sbjct: 55 VLRRLGSLDAILEPHLRRAPP-----APVRHILRIGAAQLA-LLGAPAHAAVSTAVGLAH 108
Query: 136 DFFYGDEPKFINAVLDKVS 154
G +NAVL KVS
Sbjct: 109 ARGLGKFAGLVNAVLRKVS 127
>gi|148261637|ref|YP_001235764.1| Fmu (Sun) domain-containing protein [Acidiphilium cryptum JF-5]
gi|146403318|gb|ABQ31845.1| Fmu (Sun) domain protein [Acidiphilium cryptum JF-5]
Length = 415
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ R +D ++ L + ILR G +L P +S V +AH
Sbjct: 52 VLRRLGSLDAILEPHLRRAPP-----APVRHILRIGAAQLA-LLGAPAHAAVSTAVGLAH 105
Query: 136 DFFYGDEPKFINAVLDKVS 154
G +NAVL KVS
Sbjct: 106 ARGLGKFAGLVNAVLRKVS 124
>gi|49476251|ref|YP_034292.1| SUN protein (Fmu protein) [Bartonella henselae str. Houston-1]
gi|49239059|emb|CAF28362.1| SUN protein (FMU protein) [Bartonella henselae str. Houston-1]
Length = 447
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 8/119 (6%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ D R I+ + + I + L + L +L
Sbjct: 34 DNEYGHPQYLGLSQRDRLLCRAILAAALRHRGQITDALRRFLKR--PLPSQALSLQHLLH 91
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKF---INAVLDKVSRKEEIKRSGCV 165
+++ +P I V +A +F +NA+L V+R+ R
Sbjct: 92 ISAAQILYLD-IPDHAAIDLAVRVAK--LDPRMCRFSGGVNALLRNVAREAVFLRQKAP 147
>gi|193216567|ref|YP_001999809.1| transcription termination factor [Mycoplasma arthritidis 158L3-1]
gi|193001890|gb|ACF07105.1| transcription termination factor [Mycoplasma arthritidis 158L3-1]
Length = 148
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 14/146 (9%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV----------IIHGVMD 78
Q D + ++ +Y E +D+ + + + +
Sbjct: 6 QKDQTQKKSVFLLKKYNERVKLITFIYQSELFEEKIDVNYLFEHFDLSKRELDSLTIISE 65
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ + + E+W++ R+ + +I+ G+ EL +V+I+E V IA F
Sbjct: 66 KYDLFQSIAKRSILEQWTWQRIQPLARAIIIYGIFELFF---NSPKVVINEMVNIAKSFI 122
Query: 139 YGDEP-KFINAVLDKVSRKEEIKRSG 163
D KF+N LD +++ + +
Sbjct: 123 PDDSTYKFVNRTLDMIAKSPQFAKEA 148
>gi|289524256|ref|ZP_06441110.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502912|gb|EFD24076.1| Sun protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 440
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ + +++ M R ++ S + F L IL G L+E
Sbjct: 29 EDLPEGERKLASTLVYCAMRRYNLWVEILRSF--LRRPFETLQAETRDILILGCAGLLEI 86
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
+ +++ +V D +NAVL K++ K
Sbjct: 87 KHFVPQSLVNAFVEATKKKNPADAA-LVNAVLRKIASDGREK 127
>gi|328479786|gb|EGF48904.1| transcription antitermination protein NusB [Lactobacillus rhamnosus
MTCC 5462]
Length = 145
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 13/135 (9%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M Q + R R + + + +
Sbjct: 9 MQRQQADRMTNKMESRHAIRE-------------AAFRALFALATNPEADKNAVYAEVLP 55
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ ++ GV+ + +D ++ L + W+ SRL ILR G+ E+ +
Sbjct: 56 KDTEVPSYLTALVEGVLANQAALDAALTPQLKKGWTLSRLTKPDLIILRLGLYEIRYEEA 115
Query: 121 VPVEVIISEYVCIAH 135
+P I+E + +A+
Sbjct: 116 MPEAAAINEAINLAN 130
>gi|18483231|gb|AAL73975.1|AF466201_4 hypothetical protein M3E9.200 [Sorghum bicolor]
Length = 274
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 35 CSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEK 94
S E S E A +L + L + E + G ID +I
Sbjct: 152 TSQNEKDSANEEDVLSAPPKLVYNNFVLRLSRELLVAVASGWDKHVDIIDKIIPQ----A 207
Query: 95 WSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
W + IL + + + P +V+I+E V +A F G P+ ++ +
Sbjct: 208 WKDEPVARILELCILHIAMAEMTSKGTPHKVVINEAVDLAKRFCDGGAPRVMSGI 262
>gi|110004976|emb|CAK99307.1| hypothetical transcription factor involved in antitermination
transcription regulator protein [Spiroplasma citri]
Length = 126
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 14/139 (10%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+ R+ + LY+ ++ E Y F VE +
Sbjct: 2 SKRQERINIINLLYRHFVLQNDVLTTKQ--EAYDFSQMVTTSVE-----------TNQVE 48
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
++ I I+ L W F RL ++L GV E+ + ++I+E + I
Sbjct: 49 EILANLSDIIAKINQHLKPGWDFVRLSNYHKAVLVYGVYEICY-QHLAKAIVINESLEIL 107
Query: 135 HDFFYGDEPKFINAVLDKV 153
+ + +IN+VLD+V
Sbjct: 108 KLYGEDVDFSYINSVLDQV 126
>gi|146305094|ref|YP_001185559.1| sun protein [Pseudomonas mendocina ymp]
gi|145573295|gb|ABP82827.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas mendocina ymp]
Length = 437
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
H D + + G + + + + + F D + ++L G+ +L+
Sbjct: 30 DKVEHHDRALAQDLAFGAARWQPRLQ--LLADKLLEKPFKAADKDVEALLLIGLYQLLHS 87
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P I E V A +NAVL + R+ E
Sbjct: 88 R-IPEHAAIGETVGCAGALKKPWAKGLLNAVLRRAQREHEA 127
>gi|296447350|ref|ZP_06889277.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
gi|296255129|gb|EFH02229.1| Fmu (Sun) domain protein [Methylosinus trichosporium OB3b]
Length = 467
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 12/143 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+AA + D++ RF + D R I +
Sbjct: 37 AARIAAAHVI--ADVVQGG------RRLDERFSPQAVPQRVAGLDARDAALARSIASAAI 88
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R I +++ + + + L + ++ P + V A
Sbjct: 89 RRLGTIRHALAALMDKG--LPKQGARLEWPMIVAAAQIFFLD-TPDHAAVDLAVRAARLE 145
Query: 138 -FYGDEPKFINAVLDKVSRKEEI 159
+N VL + R+ E
Sbjct: 146 PKTAPFAGLVNGVLRNLVRRREE 168
>gi|88705380|ref|ZP_01103091.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
litoralis KT71]
gi|88700470|gb|EAQ97578.1| Ribosomal RNA small subunit methyltransferase B [Congregibacter
litoralis KT71]
Length = 434
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D R I +G + + L + D + ++ AG+ +L E
Sbjct: 33 EKLPERDRALCREISYGTLRQ--FHRLDALLAQLLQKPLRAKDRDVHALALAGLYQLTEM 90
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
VP +S V A +NAVL + R E
Sbjct: 91 R-VPAHAAVSATVDAASVLKKRQLTGLLNAVLRRFQRDE 128
>gi|297184252|gb|ADI20370.1| tRNA and rRNA cytosine-c5-methylases [uncultured alpha
proteobacterium EB080_L27A02]
Length = 430
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 23/142 (16%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVIIHG 75
AR AAV+ L + R D +S + + +
Sbjct: 8 AREAAVRLL-------------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMT 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ID ++ LT + L +ILR E++ + + V +A
Sbjct: 55 TLRNLGPIDFVLQKYLT-----KQTPFALLNILRVSAAEML-VDGIAAHAAVDSAVTMAK 108
Query: 136 DF-FYGDEPKFINAVLDKVSRK 156
NAVL KV+ +
Sbjct: 109 RRHKTAHLKDLANAVLRKVASE 130
>gi|293393280|ref|ZP_06637594.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
gi|291424190|gb|EFE97405.1| RNA methyltransferase Sun [Serratia odorifera DSM 4582]
Length = 429
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A QA+ Q+ G S + I+ + D + + G +
Sbjct: 8 RSIAAQAIGQVLDQGQSLSTILPSLQ-------------KNISDKDRALLQELCFGTLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ I + + L +L G+ +L+ +P ++E V A
Sbjct: 55 LPQLEWCIQQLMAK--PMVGKQRTLHYLLMVGMYQLLYTR-IPAHAALAETVNGAVALKR 111
Query: 140 GDEPKFINAVL 150
IN VL
Sbjct: 112 PQLKGLINGVL 122
>gi|71894340|ref|YP_278448.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53]
gi|71851128|gb|AAZ43737.1| hypothetical protein MS53_0324 [Mycoplasma synoviae 53]
Length = 156
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 40/169 (23%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT K +R R+ +Q LYQ+++ ++ + + F + E +++
Sbjct: 1 MTQN------KPKTQRQK-RIEKIQILYQVEL--------LNLQKDFDFVLNMEPYLDAK 45
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ V+ + + S L W++ RL +L +IL E
Sbjct: 46 QTKE--------VFVVLKNYDYFKNFLESLLDPSWNWQRLSYMLRAILLNACAEFEFID- 96
Query: 121 VPVEVIISEYVCIAHDFF--------------YGDEPKFINAVLDKVSR 155
++I+E V I FF + KF NA+L+ +
Sbjct: 97 --ARIVINEAVEITKIFFQLTSDTSAKEYNSIDYNLFKFTNALLETYYK 143
>gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius nubinhibens ISM]
gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius nubinhibens ISM]
Length = 410
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + + + D LIS + +K + +ILR +EL
Sbjct: 22 DRLDPADRARAQRLTTQTLRAMERADRLISRHVKKKPPL-----TIRNILRLATVELAY- 75
Query: 119 HSVPVEVIISEYVCIA-HDFFYGDEPKFINAVLDKVSRK 156
++ E V +A + +NAVL K++ +
Sbjct: 76 -GGDAHGVVGEAVTLAGEGQRSQNYKGLVNAVLRKIAEE 113
>gi|16124357|ref|NP_418921.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15]
gi|221233040|ref|YP_002515476.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000]
gi|13421207|gb|AAK22089.1| rRNA methyltransferase RsmB [Caulobacter crescentus CB15]
gi|220962212|gb|ACL93568.1| 16S rRNA m5C methyltransferase RsmB [Caulobacter crescentus NA1000]
Length = 429
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 19/139 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ + E + + + R + V+
Sbjct: 11 AREAALTLIDAALSRRGGLDEA------------ASANGFRFLEPRERAFARALAMAVLR 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID +++ L + +LR G + VP ++ V +A
Sbjct: 59 HLGPIDRALTARLQ-----KAPPDRVMHLLRLGAAQAFYLE-VPAFAAVATSVELAGANK 112
Query: 139 YGD-EPKFINAVLDKVSRK 156
+NAVL + R
Sbjct: 113 TSRPFKGLVNAVLRGLLRD 131
>gi|325849117|ref|ZP_08170609.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480362|gb|EGC83425.1| putative ribosomal RNA small subunit methyltransferase B
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 426
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
Y+ T++ D+ + I+GV++ K +++ +I K ++L
Sbjct: 16 YKNEKSTDIINNIAREVSDISYITKNIYGVLENKLYLEYIIGKLSKIKIKKLDKKVLLIL 75
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ + I++E V + Y F+NA+L R EE
Sbjct: 76 EIGIYNI---HFLDRKNYAIVNELVNLTKKVSY-KSKSFVNAILRSYIRDEE 123
>gi|114769580|ref|ZP_01447190.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
proteobacterium HTCC2255]
gi|114549285|gb|EAU52167.1| ribosomal RNA small subunit methyltransferase B, putative [alpha
proteobacterium HTCC2255]
gi|297183946|gb|ADI20067.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L11F12]
Length = 430
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 23/142 (16%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES---VYLHVDLEWFRVIIHG 75
AR AAV+ L + R D +S + + +
Sbjct: 8 AREAAVRLL-------------HAVLLERRLLIDIVNGEDSLLIDLEPSERARAQSLAMT 54
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
+ ID ++ LT + L +ILR E++ + + V +A
Sbjct: 55 TLRNLGPIDFVLQKYLT-----KQTPFALLNILRVSAAEML-VDGIAAHAAVDSAVTMAK 108
Query: 136 DF-FYGDEPKFINAVLDKVSRK 156
NAVL KV+ +
Sbjct: 109 RRHKTAHLKDLANAVLRKVASE 130
>gi|49474771|ref|YP_032813.1| SUN protein (Fmu protein) [Bartonella quintana str. Toulouse]
gi|49240275|emb|CAF26748.1| SUN protein (FMU protein) [Bartonella quintana str. Toulouse]
Length = 447
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILR 109
+ H D R I+ + + I +S LT L +L
Sbjct: 34 DNEHGHPQYLGLSHRDRLLCRAILGAALRHRGQITAALSRFLTRPLPLQ--AFSLQHLLH 91
Query: 110 AGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRK 156
V +++ +P I V +A +N +L V+R+
Sbjct: 92 ISVAQILYLD-IPDHAAIDLAVRVAKIDPRMRRFSGLVNVLLRNVARE 138
>gi|332559578|ref|ZP_08413900.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
gi|332277290|gb|EGJ22605.1| Fmu (Sun) domain-containing protein [Rhodobacter sphaeroides WS8N]
Length = 410
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ D L++ L + + +ILR +E+ + P V +S V +A
Sbjct: 49 VLRHLGPADRLLAPHLRKAPPL-----TVRNILRLATVEMAADGAAPHGV-VSSAVDLAR 102
Query: 136 D-FFYGDEPKFINAVLDKVS 154
+NAVL +++
Sbjct: 103 RGRRTQHLAGLVNAVLRRIA 122
>gi|77464685|ref|YP_354189.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
gi|77389103|gb|ABA80288.1| rRNA methyltransferase RsmB-like [Rhodobacter sphaeroides 2.4.1]
Length = 421
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ D L++ L + + +ILR +E+ + P V +S V +A
Sbjct: 62 VLRHLGPADRLLAPHLRKAPPL-----TVRNILRLATVEMAADGAAPHGV-VSSAVDLAR 115
Query: 136 D-FFYGDEPKFINAVLDKVS 154
+NAVL +++
Sbjct: 116 RGRRTQHLAGLVNAVLRRIA 135
>gi|154251779|ref|YP_001412603.1| sun protein [Parvibaculum lavamentivorans DS-1]
gi|154155729|gb|ABS62946.1| sun protein [Parvibaculum lavamentivorans DS-1]
Length = 440
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 10/142 (7%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A L + + + F A+ D + R I +
Sbjct: 10 AARQGAASILTAVLKERRAFDDA--------FIAEAASGHLRNAEPRDRAFARAITATAL 61
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
R ID ++S + ++ + +ILRAG+ E++ + + D
Sbjct: 62 RRLGTIDHILSLLIDKE--LPKRAGATENILRAGLAEILFLRVAAHAAVGMNVEAASRDE 119
Query: 138 FYGDEPKFINAVLDKVSRKEEI 159
+NAVL + +R+ +
Sbjct: 120 NARHFKALVNAVLRRATREGDA 141
>gi|92114986|ref|YP_574914.1| sun protein [Chromohalobacter salexigens DSM 3043]
gi|91798076|gb|ABE60215.1| 16S rRNA m(5)C-967 methyltransferase [Chromohalobacter salexigens
DSM 3043]
Length = 433
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
A + D + + + +GV + L + L + F R D+ + ++
Sbjct: 18 SLSALDAHLDTASLDGRDRAFAKALCYGVCRTLPRLQAL--AKLLLRQPFKRRDLDVQAL 75
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
L G+ +L+ VP + E A G + +N L + R +
Sbjct: 76 LLIGLYQLLYMR-VPAHAAVGETAGAARGLGKGWATRVLNGCLRRFQRDTQT 126
>gi|325973210|ref|YP_004250274.1| transcription antitermination factor NusB [Mycoplasma suis str.
Illinois]
gi|325989654|ref|YP_004249353.1| transcription termination factor N-utilization substance protein B
[Mycoplasma suis KI3806]
gi|323574739|emb|CBZ40395.1| Transcription termination factor N-utilization substance protein B
[Mycoplasma suis]
gi|323651812|gb|ADX97894.1| transcription antitermination factor NusB [Mycoplasma suis str.
Illinois]
Length = 145
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 3/126 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI-IHGVMDRKQHIDLLISSCLTEKW 95
+ Y + E F + K I++ L + W
Sbjct: 18 IHICEAIYSDLIWSELNESRKIGEVGKNFWSDFEWRIFKKYIKNKDSFIEQINNLLRDDW 77
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
RL++ + +IL E + P V+I + V IA D+ DE K ++AV+D +
Sbjct: 78 DVGRLNLSILAILLEAFSEYSVYKTTP-AVLIQQSVQIAKDYG-EDEYKLVHAVIDNYIK 135
Query: 156 KEEIKR 161
K +I+
Sbjct: 136 KLQIQE 141
>gi|146280416|ref|YP_001170569.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri A1501]
gi|145568621|gb|ABP77727.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri A1501]
gi|327478632|gb|AEA81942.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
stutzeri DSM 4166]
Length = 440
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 3/100 (3%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
D + + G + + L + L L +
Sbjct: 31 KVDARDRGLTQELAFGTARWQPRLAGL---ANKLLQKPFKAADRDVEALLLVGLYQLLHT 87
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+P I E V +NAVL + R+ E
Sbjct: 88 RIPAHAAIGETVGCVDKLKKPWAKGLLNAVLRRAQREGEA 127
>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
psy62]
gi|254040343|gb|ACT57139.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 445
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D R I++ + ID ++ L + L +LR V +++
Sbjct: 41 LSQRDQILVRAIVNVTLRFLPRIDAVLDFVLISSLPRKKYS--LQQLLRVSVAQILYLDV 98
Query: 121 VPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRKE 157
V + V A K +N++L +VSR++
Sbjct: 99 ADYAV-VDLAVEQAKRDKENRHFAKLVNSILRRVSREK 135
>gi|302877269|ref|YP_003845833.1| sun protein [Gallionella capsiferriformans ES-2]
gi|302580058|gb|ADL54069.1| sun protein [Gallionella capsiferriformans ES-2]
Length = 421
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 16/137 (11%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
LAA Q + Q+ G + +++ D L +SV+ + + +G +
Sbjct: 6 LAATQIVQQVMEDGRNLNQVL----------DESLRRKSVWTPAQRAALQDLSYGTLRFY 55
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
++ ++ L + + R+ +L + +L + ++ V A
Sbjct: 56 GQLNAILELLLHKHMTDHRISY----LLLVALYQLQYSRAAQ-HAVVDHAVRSADIL-NP 109
Query: 141 DEPKFINAVLDKVSRKE 157
+NA+L R +
Sbjct: 110 KIRGLVNAILRNFLRNQ 126
>gi|253991652|ref|YP_003043008.1| 16S rRNA methyltransferase B [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783102|emb|CAQ86267.1| ribosomal RNA small subunit methyltransferase B [Photorhabdus
asymbiotica]
Length = 429
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A +A+ Q+ G S + ++ + + D + GV+
Sbjct: 8 RSIAAKAITQVLDQGQSLSTVLPKLQQ-------------NITDKDKSLLQEFSFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + + +L G+ +L +P ++E V Y
Sbjct: 55 LPQLEWIIIQLMAK--PLKGKQRTIHYLLMVGIYQLAYTR-IPAHAALAETVNGVVTLKY 111
Query: 140 GDEPKFINAVL 150
IN VL
Sbjct: 112 PQLKGLINGVL 122
>gi|194246432|ref|YP_002004071.1| Transcription termination factor [Candidatus Phytoplasma mali]
gi|194246854|ref|YP_002004495.1| Transcription termination factor [Candidatus Phytoplasma mali]
gi|193806789|emb|CAP18216.1| Transcription termination factor [Candidatus Phytoplasma mali]
gi|193807213|emb|CAP18656.1| Transcription termination factor [Candidatus Phytoplasma mali]
Length = 142
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 26/149 (17%)
Query: 17 GIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGV 76
+ R+ + LYQ D + Y L +F+ II
Sbjct: 5 SLIRIEVLILLYQYDFYLQDLK-----FLNY------------TTKPQSLVFFQKIIP-- 45
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
K + I + RL+ + +ILR EL+E + +II E + +
Sbjct: 46 ---KITLIDEIIQKNLYNYQLKRLNKVDQAILRLATFELLENKIIAP-IIIDEALELTKR 101
Query: 137 FF---YGDEPKFINAVLDKVSRKEEIKRS 162
+ + KF N +LD++ + ++
Sbjct: 102 YSELDDQKQHKFNNKILDQIYHSLKSLKT 130
>gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 438
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+ +++ L ++ + ++L GV +++ P + V +A
Sbjct: 69 TVLRHMGTAGMVLEPFLKKEPPL-----PVRTVLLIGVAQILFLD-TPAHAAVGTAVSLA 122
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+NAVL +V++
Sbjct: 123 RRRGLVPFAGLVNAVLRRVAQ 143
>gi|162148166|ref|YP_001602627.1| ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786743|emb|CAP56326.1| putative ribosomal RNA small subunit methyltransferase B
[Gluconacetobacter diazotrophicus PAl 5]
Length = 433
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 75 GVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA 134
V+ +++ L ++ + ++L GV +++ P + V +A
Sbjct: 69 TVLRHMGTAGMVLEPFLKKEPPL-----PVRTVLLIGVAQILFLD-TPAHAAVGTAVSLA 122
Query: 135 HDFFYGDEPKFINAVLDKVSR 155
+NAVL +V++
Sbjct: 123 RRRGLVPFAGLVNAVLRRVAQ 143
>gi|29655200|ref|NP_820892.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 493]
gi|161829958|ref|YP_001597731.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 331]
gi|1169714|sp|P45679|RSMB_COXBU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|29542472|gb|AAO91406.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii RSA 493]
gi|161761825|gb|ABX77467.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 331]
Length = 430
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ + + +G + + + + D + ++ G +L ++
Sbjct: 28 NKKNQSLIQELCYGTLRWYFKLK--LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYL-NI 84
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
P I+++ V A IN +L + +++
Sbjct: 85 PTHTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122
>gi|332289287|ref|YP_004420139.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
gi|330432183|gb|AEC17242.1| 16S rRNA methyltransferase B [Gallibacterium anatis UMN179]
Length = 440
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 34/121 (28%), Gaps = 3/121 (2%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
I+ + + + + D+ + + GV ++ +I + +
Sbjct: 16 AEVILQVLDQGKSLSSLLPAAQQRISAQDMGLLQEVCFGVCRVLPRLERIIGKLVAKPLK 75
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ L + +P + E V +N V+ + R+
Sbjct: 76 GKTRIVHCLL---LVGLYQLLYTRIPAHAAVDEVVKATAVLKVESFRGLVNGVMRRFLRE 132
Query: 157 E 157
+
Sbjct: 133 Q 133
>gi|77166463|ref|YP_344988.1| Fmu, rRNA SAM-dependent methyltransferase [Nitrosococcus oceani
ATCC 19707]
gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
19707]
Length = 403
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + + + +GV+ +D L R L L +
Sbjct: 4 LPARDQAFTQTLCYGVLRWLPRLDYL---AQKILHKPLRARDRDLYALLLLGLYQLTELG 60
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+P +SE V A K +NA L R E
Sbjct: 61 IPSHAALSETVNAAESLGKPWAKKMLNATLRAYLRNE 97
>gi|317486052|ref|ZP_07944905.1| ribosomal RNA small subunit methyltransferase B [Bilophila
wadsworthia 3_1_6]
gi|316922679|gb|EFV43912.1| ribosomal RNA small subunit methyltransferase B [Bilophila
wadsworthia 3_1_6]
Length = 364
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+L + ++ EL+ +P +S V F + N VL + R
Sbjct: 5 EKLPASMKLMIGIAAYELLYLDRIPAHASVSAAVDAVRARFGQGLSRVANGVLRSLIRLS 64
Query: 158 EIK 160
E +
Sbjct: 65 ESE 67
>gi|285019616|ref|YP_003377327.1| tRNA and rRNA cytosine-c5-methylase [Xanthomonas albilineans GPE
PC73]
gi|283474834|emb|CBA17333.1| putative trna and rrna cytosine-c5-methylase protein [Xanthomonas
albilineans]
Length = 437
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 65 DLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVE 124
D I V+ R+ + + L ++ + D L ++L AG +L P
Sbjct: 47 DRALVEAICFAVLRRRPAYEAALRLWLQKQ--LPQRDAELRALLLAGFAQLDVLGLAP-H 103
Query: 125 VIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+S V + +NA+L + R
Sbjct: 104 AALSATVEATRALERPRQAGLVNALLRRALRD 135
>gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
Length = 480
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D ++ G + +D +++S L ++ L LR E++
Sbjct: 38 LGEKDRALATRLLLGSVSAVGELDRVLASYLPKRRHLEP---KLRDALRLATFEILYL-H 93
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P V +S+ V +A NA+L +++
Sbjct: 94 TPKHVAVSQGVEMARR-ASAQATGLANAILRRIA 126
>gi|295687552|ref|YP_003591245.1| sun protein [Caulobacter segnis ATCC 21756]
gi|295429455|gb|ADG08627.1| sun protein [Caulobacter segnis ATCC 21756]
Length = 431
Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 19/139 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+ + E + + + R + V+
Sbjct: 11 AREAALTLIDAALSRRGGLDEA------------ASANGFRFLEPRERAFARALAMAVLR 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID +++ L + +LR G + VP ++ V +A
Sbjct: 59 HLGPIDRALAARLQ-----KAPPDRVMHLLRLGAAQA-FHLEVPAFAAVATSVELAGANK 112
Query: 139 YGD-EPKFINAVLDKVSRK 156
+NAVL + R
Sbjct: 113 ASRPFKGLVNAVLRGLLRD 131
>gi|325272515|ref|ZP_08138891.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
gi|324102349|gb|EGB99819.1| 16S rRNA methyltransferase B [Pseudomonas sp. TJI-51]
Length = 358
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+P I E V A +NAVL + R+ E +G
Sbjct: 7 FYTRIPAHAAIGETVGCADKLKKPWAKGLLNAVLRRAQREGEALLAG 53
>gi|206896332|ref|YP_002247123.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
proteolyticus DSM 5265]
gi|206738949|gb|ACI18027.1| hypothetical protein COPRO5265_0776 [Coprothermobacter
proteolyticus DSM 5265]
Length = 148
Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 17/153 (11%)
Query: 12 LSHRRGI----ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE 67
+S RG R +Q L ++ S ++ + V
Sbjct: 1 MSKSRGKLFETGRELLLQELLGYELGLTSQEDLWPRLK-----------VALPKSDRVKR 49
Query: 68 WFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC-HSVPVEVI 126
+ +++ ++ ++ ID+ I L K SF+ + I+R V+E + +I
Sbjct: 50 HIKRLLNAYLENREEIDIWIDHSLKSK-SFAAYSDLEKMIMRLAVVETRFFGDEKMMPII 108
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+S +V IA + K I+A++ ++
Sbjct: 109 VSTWVDIARRYVDESFAKAIHAIMGTCYEEQNA 141
>gi|303326115|ref|ZP_07356558.1| sun protein [Desulfovibrio sp. 3_1_syn3]
gi|302864031|gb|EFL86962.1| sun protein [Desulfovibrio sp. 3_1_syn3]
Length = 464
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ +++G + + I L+ RL + L IL V L+
Sbjct: 57 LPQQERHLCSELVYGCLRAEIRIAYLLGR---VLPKPERLPLPLRHILELAVYALLFQER 113
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
VP + V A F + N L + R
Sbjct: 114 VPDHAAVHSAVAQAERLFGRSLARVTNGALRSIQR 148
>gi|121602907|ref|YP_988410.1| putative ribosomal RNA small subunit methyltransferase B
[Bartonella bacilliformis KC583]
gi|120615084|gb|ABM45685.1| putative ribosomal RNA small subunit methyltransferase B
[Bartonella bacilliformis KC583]
Length = 456
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D R I+ + + I +S LT L + +++
Sbjct: 44 KLSYRDRLLCRAILIAALRHRGQIQAALSRFLTR--PLPSKAFALQHLFHISAAQILYLD 101
Query: 120 SVPVEVIISEYVCIAHDFFYGD-EPKFINAVLDKVSRK 156
+P I V A +NA+L +R
Sbjct: 102 -IPDYAAIDLAVRAAKIDPRTRCFSGLVNAILRNFARD 138
>gi|154707343|ref|YP_001423631.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|165922514|ref|ZP_02219685.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 334]
gi|154356629|gb|ABS78091.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|165916719|gb|EDR35323.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
RSA 334]
Length = 430
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ + + +G + + + + D + ++ G +L ++
Sbjct: 28 NKNNQSLIQELCYGTLRWYFKLK--LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYL-NI 84
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
P I+++ V A IN +L + +++
Sbjct: 85 PTHTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122
>gi|15828640|ref|NP_326000.1| hypothetical protein MYPU_1690 [Mycoplasma pulmonis UAB CTIP]
gi|14089582|emb|CAC13342.1| unknown; predicted coding region [Mycoplasma pulmonis]
Length = 160
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 18/151 (11%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
N + + + ++R + +Y+ + + I ++ F +
Sbjct: 10 NSELPSIYRDKRLSRFLMICEIYKWYLSESNLD-INDDFVNQAFSLEE------------ 56
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
++ ++ K + LIS L + L + I + V
Sbjct: 57 ----NKVLKLILKNKTKFENLISKFLKSNSLKWEQILPLIKAIILFFSVQISLQDLDGPV 112
Query: 126 IISEYVCIAHDF-FYGDEPKFINAVLDKVSR 155
+ISE + I+ D + E FINA+LDK+S+
Sbjct: 113 LISEALEISKDLIYEKKEVAFINAILDKISK 143
>gi|153209759|ref|ZP_01947497.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
'MSU Goat Q177']
gi|212217708|ref|YP_002304495.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
gi|120575262|gb|EAX31886.1| ribosomal RNA small subunit methyltransferase B [Coxiella burnetii
'MSU Goat Q177']
gi|212011970|gb|ACJ19350.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 430
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ + + +G + + + + D + ++ G +L ++
Sbjct: 28 NKNNQSLIQELCYGTLRWYFKLK--LIAEKLLHAPLRDKDHDIFCLILTGFYQLNYL-NI 84
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
P I+++ V A IN +L + +++
Sbjct: 85 PTHTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122
>gi|217977604|ref|YP_002361751.1| sun protein [Methylocella silvestris BL2]
gi|217502980|gb|ACK50389.1| sun protein [Methylocella silvestris BL2]
Length = 448
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 47/149 (31%), Gaps = 13/149 (8%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARLAA L DI+G + F D+ R I+ +
Sbjct: 18 ARLAAAAIL--NDIVGK------AHSLEDCFSPGAIPSRLQGLDPRDVALTRSIVTAALR 69
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137
R I + L + R L L A +++ VP + V +
Sbjct: 70 RLGTIRKTLGEFLDKG--LPRPVAHLEWTLIAAAAQILFLD-VPDHAAVDLAVRATRLEN 126
Query: 138 FYGDEPKFINAVLDKVSR-KEEIKRSGCV 165
INAVL ++R +++I
Sbjct: 127 KSAPFAGVINAVLRNIARGRDKILEDSDP 155
>gi|212211692|ref|YP_002302628.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010102|gb|ACJ17483.1| 16S rRNA m(5)C 967 methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 430
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
+ + + +G + + + D + ++ G +L ++
Sbjct: 28 NKNNQSLIQELCYGTLRWYFKLKFIAEKL--LHAPLRDKDHDIFCLILTGFYQLNYL-NI 84
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
P I+++ V A IN +L + +++
Sbjct: 85 PTHTIVNQTVGAAEILKKPWAKGLINKLLRRFIAEKDE 122
>gi|114706034|ref|ZP_01438937.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506]
gi|114538880|gb|EAU42001.1| hypothetical protein FP2506_16249 [Fulvimarina pelagi HTCC2506]
Length = 473
Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 12/141 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR A + L + S + D D + I+ +
Sbjct: 44 KARQVAAKLLGAVIEQQTSLDGLTDP--------DHGHPHFRQLEARDQGLVKAILLTAL 95
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + I++ L L +L ++ VP + V A
Sbjct: 96 RFRGTLTQEIAARLDR--PLPSNATALNHLLHVAAAQIRFLD-VPDSAAVDLAVTAAEAD 152
Query: 138 -FYGDEPKFINAVLDKVSRKE 157
+NAVL +++R+
Sbjct: 153 PRTRRFKGVVNAVLRRMTREL 173
>gi|256830606|ref|YP_003159334.1| sun protein [Desulfomicrobium baculatum DSM 4028]
gi|256579782|gb|ACU90918.1| sun protein [Desulfomicrobium baculatum DSM 4028]
Length = 424
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 39/132 (29%), Gaps = 15/132 (11%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ L + + E V D + +G +
Sbjct: 6 ARRLALDILRRTLDHKQDLQAAVDEVLN------------PVQAGPDKGLATELAYGYLR 53
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ ID L+S L S + IL + EL+ +P + V + +
Sbjct: 54 MRGRIDFLLSQLLKNPVQTSPIMKR---ILGVAMYELLFLSRIPDYATLDWAVTLVRERL 110
Query: 139 YGDEPKFINAVL 150
K N VL
Sbjct: 111 DQTMGKVANGVL 122
>gi|296114107|ref|YP_003628045.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis RH4]
gi|295921801|gb|ADG62152.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis RH4]
Length = 448
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLKSTEMSSRGFAHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|167648734|ref|YP_001686397.1| Fmu (Sun) domain-containing protein [Caulobacter sp. K31]
gi|167351164|gb|ABZ73899.1| Fmu (Sun) domain protein [Caulobacter sp. K31]
Length = 426
Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 19/151 (12%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A+ + E + +RF + + R + +
Sbjct: 11 AREGALALIDAALSRRGGLDEA-ASANAFRF-----------LEPRERAFARALAMATLR 58
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
ID ++ L + ++LR G + VP ++ V +A
Sbjct: 59 HLGPIDRALAGKLA-----KEPPPRVRNLLRLGATQAFFLE-VPAFAAVATSVELAGASK 112
Query: 139 YGD-EPKFINAVLDKVSRKEEIKRSGCVSAI 168
+NAVL + R + + A
Sbjct: 113 TSRPFKGLVNAVLRGLLRDGALSDASEHLAP 143
>gi|167892276|ref|ZP_02479678.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 7894]
Length = 469
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPSRAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPTHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|167736565|ref|ZP_02409339.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 14]
gi|167822184|ref|ZP_02453655.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 9]
gi|226194606|ref|ZP_03790201.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254182248|ref|ZP_04888845.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|254188214|ref|ZP_04894726.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|254260319|ref|ZP_04951373.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
gi|157935894|gb|EDO91564.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pasteur 52237]
gi|184212786|gb|EDU09829.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1655]
gi|225933307|gb|EEH29299.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei Pakistan 9]
gi|254219008|gb|EET08392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710a]
Length = 469
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPSRAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|329118891|ref|ZP_08247586.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464919|gb|EGF11209.1| ribosomal RNA small subunit methyltransferase B [Neisseria
bacilliformis ATCC BAA-1200]
Length = 441
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 46/153 (30%), Gaps = 20/153 (13%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
N K + ++ A Q L + + + + + A EL + D
Sbjct: 18 NPKPMSMA--------LA-QKLAAQSVAAVAAGQNLQDVLERIRAAHPELSAQENGTLQD 68
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ + G + ++S L +D L L +
Sbjct: 69 IAY------GCQRYLGSLKHMLSHMLK-----KPVDNRELESLLLAALYQLHYTRNAPHA 117
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+++E V G F NA+L + R+ +
Sbjct: 118 VVNEAVEAIAKIGRGQYCSFANAILRRFLRERD 150
>gi|76812251|ref|YP_331765.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
gi|76581704|gb|ABA51179.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1710b]
Length = 519
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 51 MTQTRPSRSRASGAPSRAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 110
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 111 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 170
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 171 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 210
>gi|326571735|gb|EGE21748.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC8]
gi|326574350|gb|EGE24293.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis CO72]
Length = 448
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|326563104|gb|EGE13377.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 12P80B1]
Length = 448
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|326561732|gb|EGE12067.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 7169]
gi|326562326|gb|EGE12652.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 103P14B1]
gi|326569046|gb|EGE19115.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC1]
gi|326571810|gb|EGE21816.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis BC7]
gi|326575530|gb|EGE25455.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 101P30B1]
Length = 448
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLESTEMSSRGFVHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|261856665|ref|YP_003263948.1| sun protein [Halothiobacillus neapolitanus c2]
gi|261837134|gb|ACX96901.1| sun protein [Halothiobacillus neapolitanus c2]
Length = 437
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 7/112 (6%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
S V + + + V+ + + S L + ++L LE I
Sbjct: 33 SQAQPVHRGLVQAMGYEVLRHYEALVFWRDSLLERPIPAKS---AIIALLLLVGLERIRG 89
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++ V A + + +NAVL + R+ E V Q
Sbjct: 90 ARREASRSVNSAVQAARELGHPWATGLLNAVLRRAVRQIEEG----VDPFAQ 137
>gi|74316034|ref|YP_313774.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
gi|74055529|gb|AAZ95969.1| Fmu, rRNA SAM-dependent methyltransferase [Thiobacillus
denitrificans ATCC 25259]
Length = 418
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +++G + + ID + + L + D L S+LR + ++ P I+
Sbjct: 41 LQDLVYGSLRQLGRIDAWLDALLERPLT----DPHLESLLRIALYQMAYTR-APAHAIVH 95
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSR---KEEIKRSGCVSA 167
V A G NAVL R + + A
Sbjct: 96 NAVSAA---GGGWRRGLANAVLRNFQRRRAELDALAEAKPGA 134
>gi|255261461|ref|ZP_05340803.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
gi|255103796|gb|EET46470.1| rRNA methyltransferase RsmB [Thalassiobium sp. R2A62]
Length = 425
Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 19/157 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ R AAV L QI + +++
Sbjct: 1 MAQTGYAPRRAAVHLLDQI--------IDEGRLMSELIGGGALKHLDAGDTARAQRLTVE 52
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ G+ + + + + + ++LR G +E+ + V ++ V
Sbjct: 53 TLRGLDRADRMLKPFLKR---------KPGGTVMNVLRLGTVEICAEGAAAHGV-VNSAV 102
Query: 132 CI-AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
I + +NAVL +V+ + K +
Sbjct: 103 EIVSKSQRTSAMKGLVNAVLRRVAEQGSEKWNRLPVP 139
>gi|254559138|ref|YP_003066233.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Methylobacterium
extorquens DM4]
gi|254266416|emb|CAX22180.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Methylobacterium
extorquens DM4]
Length = 454
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 17/155 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A L + A + ++ + F
Sbjct: 23 RHAAREAVATLL-----GPARGLALEDALAQAARGAGLDTGEAALARAIATASF------ 71
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
R I +++ L + D L I +V + V +A
Sbjct: 72 --RRLGFIKAALAARLRDGLP---EDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAK 126
Query: 136 DFFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL +++R+ + R+ +
Sbjct: 127 ADPQLQHLVPLVNAVLRRIARERDAIRAQESDPLA 161
>gi|326573497|gb|EGE23463.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis O35E]
Length = 448
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLKSTEMSSRGFVHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|326560689|gb|EGE11057.1| 16S rRNA m5C967 SAM-dependent methyltransferase [Moraxella
catarrhalis 46P47B1]
Length = 448
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
+I E + ++ + + ++ G + + +S
Sbjct: 22 VIEEILNGKSLSELLDPLLKSTEMSSRGFVHELLLGTLRQ----WWALSRISESLIENPV 77
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
D + + + G+ +LI ++P I++ V +NA+L K + +
Sbjct: 78 TDQGVQAAINIGLYQLIYM-NIPEYAAINDTVEALKQLGKEYGTGLVNAILRKTQKSK 134
>gi|240137127|ref|YP_002961596.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Methylobacterium
extorquens AM1]
gi|240007093|gb|ACS38319.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Methylobacterium
extorquens AM1]
Length = 454
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 17/155 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A L + A + ++ + F
Sbjct: 23 RHAAREAVATLL-----GPARGLALEDALAQAARGAGLDAGEAALARAIATASF------ 71
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
R I +++ L + D L I +V + V +A
Sbjct: 72 --RRLGFIKAALAARLRDGLP---EDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAK 126
Query: 136 DFFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL +++R+ + R+ +
Sbjct: 127 ADPQLQHLVPLVNAVLRRIARERDAIRAQESDPLA 161
>gi|218528533|ref|YP_002419349.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
gi|218520836|gb|ACK81421.1| Fmu (Sun) domain protein [Methylobacterium chloromethanicum CM4]
Length = 454
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 17/155 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R AR A L + A + ++ + F
Sbjct: 23 RHAAREAVATLL-----GPARGLALEDALAQAARGAGLDAGEAALARAIATASF------ 71
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
R I +++ L + D L I +V + V +A
Sbjct: 72 --RRLGFIKAALAARLRDGLP---EDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAK 126
Query: 136 DFFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL +++R+ + R+ +
Sbjct: 127 ADPQLQHLVPLVNAVLRRIARERDAIRAQESDPLA 161
>gi|225024416|ref|ZP_03713608.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
gi|224942797|gb|EEG24006.1| hypothetical protein EIKCOROL_01291 [Eikenella corrodens ATCC
23834]
Length = 419
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
+ + I +G + L+ L + + S++ A + +
Sbjct: 31 WRDHPQLSAQERGALQDIAYGCQRFSGSLRALLDLMLNKPLP----RADIRSLILAALYQ 86
Query: 115 LIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
L + +++E V A G NA+L + R+ +
Sbjct: 87 LAYSRNA-AHAVVNEAVRAAGKIGKGQYKALTNALLRRFLRERD 129
>gi|254466360|ref|ZP_05079771.1| Fmu [Rhodobacterales bacterium Y4I]
gi|206687268|gb|EDZ47750.1| Fmu [Rhodobacterales bacterium Y4I]
Length = 420
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 20/145 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV L Q+ G E + D + + +
Sbjct: 7 ARRTAVYLLDQVLGEGRLLAECYA------------AGALEKLAPEDRARAQRLAVETLR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137
+ D L+ L + ++ + LR G +EL C +++ V I +
Sbjct: 55 SLERADRLLKKHLKKTPPL-----MVMNALRLGTVEL--CSGGAAHGVVNAMVAIVSKHR 107
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRS 162
+G +NAVL KV+ + + +
Sbjct: 108 RHGQLKGLVNAVLRKVAEEGPAEWA 132
>gi|300115538|ref|YP_003762113.1| sun protein [Nitrosococcus watsonii C-113]
gi|299541475|gb|ADJ29792.1| sun protein [Nitrosococcus watsonii C-113]
Length = 435
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R+ A L ++ G S T ++ + + + + + +GV+
Sbjct: 8 RIIATSVLVRVLDQGRSLTGVLPPAMAH-------------LPAREQAFTQTLCYGVVRW 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+D L+ R L L + +P +SE V A +
Sbjct: 55 LPRLDYLVQK---LLHKPLRARDRDLYALLLLGLYQLTELGIPSYAALSETVNAAENLGK 111
Query: 140 GDEPKFINAVLDKVSRKE 157
K +N L R E
Sbjct: 112 PWAKKMLNGTLRAYLRNE 129
>gi|254509818|ref|ZP_05121885.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
gi|221533529|gb|EEE36517.1| Fmu (Sun) [Rhodobacteraceae bacterium KLH11]
Length = 419
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S+ AR +A+ L QI G E ++ D +
Sbjct: 1 MSNSATAARRSAIYLLDQILGEGRLLPECLA------------AGALDRLAPEDRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L++ L + + + + LR G +EL + +++ V
Sbjct: 49 LTIETLRGLERADRLLADHLRQTPAL-----TVHNALRLGTVELCQGE--AAHGVVNAMV 101
Query: 132 CIA-HDFFYGDEPKFINAVLDKVS 154
I +G +NAVL K++
Sbjct: 102 EIVGRSRKHGRLKGLVNAVLRKIA 125
>gi|167900770|ref|ZP_02487975.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei NCTC 13177]
Length = 469
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|167917035|ref|ZP_02504126.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei BCC215]
Length = 469
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|237810344|ref|YP_002894795.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
gi|237505926|gb|ACQ98244.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei MSHR346]
Length = 469
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|126439349|ref|YP_001057209.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|167908993|ref|ZP_02496084.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 112]
gi|217424987|ref|ZP_03456483.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
gi|254295711|ref|ZP_04963168.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|126218842|gb|ABN82348.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 668]
gi|157805800|gb|EDO82970.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 406e]
gi|217392007|gb|EEC32033.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 576]
Length = 469
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|53717766|ref|YP_106752.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|53724953|ref|YP_101986.1| sun protein [Burkholderia mallei ATCC 23344]
gi|67642457|ref|ZP_00441213.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|121599506|ref|YP_994096.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|124385742|ref|YP_001028242.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei NCTC 10229]
gi|126451630|ref|YP_001064449.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|167003288|ref|ZP_02269077.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
gi|167717523|ref|ZP_02400759.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei DM98]
gi|167813639|ref|ZP_02445319.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 91]
gi|167843776|ref|ZP_02469284.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei B7210]
gi|242316376|ref|ZP_04815392.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|254176710|ref|ZP_04883367.1| sun protein [Burkholderia mallei ATCC 10399]
gi|254197181|ref|ZP_04903604.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|254203667|ref|ZP_04910027.1| sun protein [Burkholderia mallei FMH]
gi|254208643|ref|ZP_04914991.1| sun protein [Burkholderia mallei JHU]
gi|254360303|ref|ZP_04976573.1| sun protein [Burkholderia mallei 2002721280]
gi|52208180|emb|CAH34111.1| NOL1/NOP2/Sun family protein [Burkholderia pseudomallei K96243]
gi|52428376|gb|AAU48969.1| sun protein [Burkholderia mallei ATCC 23344]
gi|121228316|gb|ABM50834.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei SAVP1]
gi|126225272|gb|ABN88812.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106a]
gi|147745179|gb|EDK52259.1| sun protein [Burkholderia mallei FMH]
gi|147750519|gb|EDK57588.1| sun protein [Burkholderia mallei JHU]
gi|148029543|gb|EDK87448.1| sun protein [Burkholderia mallei 2002721280]
gi|160697751|gb|EDP87721.1| sun protein [Burkholderia mallei ATCC 10399]
gi|169653923|gb|EDS86616.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei S13]
gi|238523614|gb|EEP87051.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei GB8 horse 4]
gi|242139615|gb|EES26017.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 1106b]
gi|243061145|gb|EES43331.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
mallei PRL-20]
Length = 469
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 61 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 120
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 121 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 160
>gi|114321773|ref|YP_743456.1| sun protein [Alkalilimnicola ehrlichii MLHE-1]
gi|114228167|gb|ABI57966.1| 16S rRNA m(5)C-967 methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 437
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 16/139 (11%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AVQ L Q+ S + + + D + +GV+
Sbjct: 12 RQRAVQCLGQVLDQHQSLDQALP-------------RAQQGLPPRDAALLAELCYGVLRW 58
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ L L + D+ L + +P ++E V +A
Sbjct: 59 HDRLRALAHRLLDKPLRGKDADLQRL---LLCGLYQLLETRIPPHAAVAETVAVAPRLGK 115
Query: 140 GDEPKFINAVLDKVSRKEE 158
G INAVL + R+ +
Sbjct: 116 GWARGLINAVLRRAQREAD 134
>gi|149912797|ref|ZP_01901331.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. AzwK-3b]
gi|149813203|gb|EDM73029.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. AzwK-3b]
Length = 427
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 20/144 (13%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S AR +AV L Q+ G +++I D +
Sbjct: 1 MSQPAPSARRSAVHLLDQVLGEGRLMSDLI------------SSGALDRLDPADRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L+ L + + +ILR G +EL ++++ V
Sbjct: 49 LATDTLRGIERADRLLKRHLRKPPPL-----HVFNILRLGTVELCM--GGDAHGVVNDLV 101
Query: 132 CIA-HDFFYGDEPKFINAVLDKVS 154
+ YG+ INAVL K++
Sbjct: 102 ALVGSHRRYGNLKGLINAVLRKMA 125
>gi|218514046|ref|ZP_03510886.1| probable RNA methyltransferase - sun protein [Rhizobium etli 8C-3]
Length = 380
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF- 137
ID I+S + L +L G +++ VP + V A+
Sbjct: 1 HLPRIDAAIASL--LESPLPEGARALHHVLSIGAAQILYLD-VPDHSAVDLAVEQANQDP 57
Query: 138 FYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
K +NAVL ++ R+++ + G V+
Sbjct: 58 RNRRFAKLVNAVLRRLGREKDPVLAEIGKVAP 89
>gi|167617463|ref|ZP_02386094.1| sun protein [Burkholderia thailandensis Bt4]
gi|257140661|ref|ZP_05588923.1| sun protein [Burkholderia thailandensis E264]
Length = 470
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + R +A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ + + I + M R+ D LI+ + + +++C+ A +++
Sbjct: 61 TLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCA--FALLVDD 118
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
E + ++ + V I +NAVL + R+
Sbjct: 119 DEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 161
>gi|313199965|ref|YP_004038623.1| sun protein [Methylovorus sp. MP688]
gi|312439281|gb|ADQ83387.1| sun protein [Methylovorus sp. MP688]
Length = 427
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 8/133 (6%)
Query: 30 IDIIGCSTTEIISEYETYRFC---ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
+ I E + + T R D + + + +G + + + L
Sbjct: 1 MQIAQQLAAEAVHQVLTGRNLGVTLDAMFSRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
++ L + D L +L + +L + + I+ + V + F
Sbjct: 61 LNQLLQKPL----QDERLRCLLLVAIYQLQQARAAS-HTIVDQAVQASAQFKKPWVKGLT 115
Query: 147 NAVLDKVSRKEEI 159
NAVL R+++
Sbjct: 116 NAVLRNFLRQQDA 128
>gi|158426322|ref|YP_001527614.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS
571]
gi|158333211|dbj|BAF90696.1| rRNA SAM-dependent methyltransferase [Azorhizobium caulinodans ORS
571]
Length = 456
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 18/134 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARL A AL +I S + ++ D I+ +
Sbjct: 33 ARLLAADALDRILRGNASLEDAFIH--------------DAGLEPRDRALAFRIVATALR 78
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DF 137
R + ++++ + + + ++L G +++ VP + V IA D
Sbjct: 79 RLGTLRAVLTALMERGAP--KSAPKVETVLLVGAAQILFMD-VPDHAAVGLSVDIARGDN 135
Query: 138 FYGDEPKFINAVLD 151
INAVL
Sbjct: 136 STAGFAGLINAVLR 149
>gi|83719791|ref|YP_440691.1| sun protein [Burkholderia thailandensis E264]
gi|83653616|gb|ABC37679.1| sun protein [Burkholderia thailandensis E264]
Length = 571
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + R +A+ + + +D + + A
Sbjct: 102 MTQTRPSRSRASGAPARAPRQSALHLVPDSLGFALDGAAQAVDAVTRGAALPAALAAVHA 161
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ + + I + M R+ D LI+ + + +++C+ A +++
Sbjct: 162 TLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCA--FALLVDD 219
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
E + ++ + V I +NAVL + R+
Sbjct: 220 DEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 262
>gi|56698200|ref|YP_168572.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
pomeroyi DSS-3]
gi|56679937|gb|AAV96603.1| ribosomal RNA small subunit methyltransferase B, putative [Ruegeria
pomeroyi DSS-3]
Length = 423
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 20/144 (13%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
++ AR +A+ L QI G +E + + +
Sbjct: 1 MADSATQARQSAIDLLDQILGEGRLLSECLG------------AGALDRLPPEERARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L+ L + S + + LR G +EL ++ V
Sbjct: 49 LTLDTLRGLERADRLLKPHLQKAPPLS-----VRNALRLGTVELAHGE--AAHGVVHSMV 101
Query: 132 CIA-HDFFYGDEPKFINAVLDKVS 154
I +G +NAVL KV+
Sbjct: 102 EIVGRSRRHGRLKGLVNAVLRKVA 125
>gi|302525884|ref|ZP_07278226.1| fmu protein [Streptomyces sp. AA4]
gi|302434779|gb|EFL06595.1| fmu protein [Streptomyces sp. AA4]
Length = 371
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
LR G +L+ +P + V + F NA+L VS K+E + +S
Sbjct: 6 LRLGAYQLL-RTRIPEHASVGSTVDLVRAEAGSWATGFANAILRAVSTKDEAQWLDELSP 64
>gi|188579790|ref|YP_001923235.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
gi|179343288|gb|ACB78700.1| Fmu (Sun) domain protein [Methylobacterium populi BJ001]
Length = 438
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 17/155 (10%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHG 75
R +AR A T + A + + + R I
Sbjct: 7 RHVAREAV-------------ATLVGPARGLALEDALAQAARGARLEPGEAALARAIATA 53
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
R I +++ L + +R + L I +V + V +A
Sbjct: 54 SFRRLGFIQAALAARLRDGLPENRPHL---LALLVTGAAQILDLAVADHAAVDLSVRLAK 110
Query: 136 DFFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL ++ R+ + R+ +
Sbjct: 111 ADPQLQHLAPLVNAVLRRIVRERDAIRAEETDPLA 145
>gi|328955666|ref|YP_004372999.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
gi|328455990|gb|AEB07184.1| NusB/RsmB/TIM44 [Coriobacterium glomerans PW2]
Length = 470
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 5/122 (4%)
Query: 47 YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCS 106
+ + + D + + G +D +I L S +
Sbjct: 27 HVRELLDGVARDRHLDRRDAAFAMRLALGATVTSGALDEVIDMHLDHPRRVSA---RVRI 83
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVS 166
LR ELI P V +S+ V + NAVL +V+ + +
Sbjct: 84 ALRIAAFELIYLER-PPAVAVSQGVELVGSI-ARSATGLANAVLRRVATSRRSYLAAADA 141
Query: 167 AI 168
+
Sbjct: 142 PL 143
>gi|213584492|ref|ZP_03366318.1| 16S rRNA methyltransferase B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 364
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 93 EKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDK 152
+ + ++ G +L+ VP ++E V A IN VL +
Sbjct: 1 MSRPMTGKQRTVHYLIMVGFYQLLYTR-VPPHAALAETVEGAVSIKRPQLKGLINGVLRQ 59
Query: 153 VSRKEEI 159
R++E
Sbjct: 60 FQRQQET 66
>gi|37528514|ref|NP_931859.1| 16S rRNA methyltransferase B [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|46396778|sp|Q7MYI0|RSMB_PHOLL RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
rsmB
gi|36787952|emb|CAE17069.1| RsmB protein (SUN/FMU protein), 16S RNA m5C967 methyltransferase
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 429
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R +A+ Q+ G S + ++ + + D + + GV+
Sbjct: 8 RSITAKAINQVLDQGQSLSTVLPKLQQ-------------NITDKDKPLLQELSFGVLRV 54
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ +I + + IL +L G+ +L +P ++E V A +
Sbjct: 55 LPQLEWIIGQLMVK--PLKGKQRILHYLLMVGIYQLAYTR-IPAHAALAETVNGAVTLKH 111
Query: 140 GDEPKFINAVL 150
IN VL
Sbjct: 112 SQLKGLINGVL 122
>gi|288573288|ref|ZP_06391645.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569029|gb|EFC90586.1| Fmu (Sun) domain protein [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 473
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 3/116 (2%)
Query: 39 EIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFS 98
E+ E RF +++ + D +++ ++ R+ ++ L S
Sbjct: 43 EVWREVRRGRFASESLRAISDRVSEKDRPLAATLVYSLIRRESLWKEIVGRFLKTGSSGV 102
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
+ L G +E + V+++ V + +NAVL ++
Sbjct: 103 SPAVRDA--LMVGAAGSLELRTFEPRVLVNALVEWTKCR-DERGSRVVNAVLRRIV 155
>gi|220925067|ref|YP_002500369.1| sun protein [Methylobacterium nodulans ORS 2060]
gi|219949674|gb|ACL60066.1| sun protein [Methylobacterium nodulans ORS 2060]
Length = 448
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
DL R I I +++ +T+ + ++ A I +
Sbjct: 47 LGAQDLGLARAIAAATFRHLGVIRHALAARMTQGLPEDQPRLLALL---ATGAAQILYLN 103
Query: 121 VPVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSRKEEIKRS-GCVSAI 168
V + V IA + +NAVL +++R++ R G +
Sbjct: 104 VQDHAAVDLSVRIAKNEAALRHLSGLVNAVLRRIAREQAAIRQEGDADPL 153
>gi|253997900|ref|YP_003049963.1| sun protein [Methylovorus sp. SIP3-4]
gi|253984579|gb|ACT49436.1| sun protein [Methylovorus sp. SIP3-4]
Length = 427
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 30 IDIIGCSTTEIISEYETYRFC---ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
+ I E + + T R D + + + +G + + + L
Sbjct: 1 MQIAQQLAAEAVHQVLTGRNLGVTLDAMFSRQRSLTPQQRGMTQDLSYGCLRQYGQLQAL 60
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
++ L + D L +L + +L + + I+ + V + F
Sbjct: 61 LNQLLQKPL----QDERLRCLLLVAIYQLQQARAAS-HTIVDQAVQASAQFKKPWVKGLT 115
Query: 147 NAVLDKVSRKEEI 159
NAVL R++++
Sbjct: 116 NAVLRNFLRQQDV 128
>gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6]
Length = 440
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AV+ L +ID S E + + + + + R+
Sbjct: 6 EIAVEILERIDEEIISAKEALKAGLA-----------GKDFDYKVRGSIHAYVMETLKRR 54
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
ID LI L K + L L ++LR V E+ V + V IA G
Sbjct: 55 NTIDFLIDRSLDGK-TVYELKPFLRNLLRVAVYEMFY-KGVHPALATDSAVRIAKRRIGG 112
Query: 141 DEPKFINAVLDKVSR 155
+NAV+ + +
Sbjct: 113 RAAALVNAVMRRAEK 127
>gi|167834982|ref|ZP_02461865.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
thailandensis MSMB43]
Length = 470
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + RL+A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRLSALHLVPNSLGFALDGAAQAVDAVNRGAALPAALAAVHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M + D LI+ + + +++C+ A +++
Sbjct: 61 SMSSNAQAAARGAIQDIAYRAMRFRGTADWLIAQLVAKAPPAHVHALLVCA--FALLVDD 118
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
E + ++ + V I +NAVL + R+
Sbjct: 119 GEHAAYTPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 161
>gi|126736247|ref|ZP_01751990.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2]
gi|126714413|gb|EBA11281.1| rRNA methyltransferase RsmB [Roseobacter sp. CCS2]
Length = 424
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 46/152 (30%), Gaps = 20/152 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR +A L + I G +E+ + G+
Sbjct: 8 ARRSAHHLL--MQITGEG------RLMAELIGGGALARLENDDRARAQRLATETLRGLDR 59
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137
+ + + + + LR GV+EL C +++ YV I A +
Sbjct: 60 ADRMLKPYLK---------KTPPDHVMNALRLGVIEL--CSGEAAHGVVNAYVEIVARNK 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
NAVL K++ + + +T
Sbjct: 109 RTQAMKGLTNAVLRKIAAEGPEGWNKRAIPLT 140
>gi|147795869|emb|CAN61042.1| hypothetical protein VITISV_037527 [Vitis vinifera]
Length = 360
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 31/136 (22%)
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEV 125
+ R ++ V+D+ L+I W IL + + I ++
Sbjct: 221 RSFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVLGTRHQI 280
Query: 126 IISE-------------------------------YVCIAHDFFYGDEPKFINAVLDKVS 154
+I+E V +A F G P+ IN L
Sbjct: 281 VINEVNSFSFSLSFSHDLPVKCISTSLTLIWLLMKAVDLAKRFCDGAAPRIINGCLRTFV 340
Query: 155 RKEEIKRSGCVSAITQ 170
+ E S TQ
Sbjct: 341 KDLEGTGITRASETTQ 356
>gi|666027|dbj|BAA05000.1| unnamed protein product [Thermus thermophilus HB27]
Length = 164
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 107 ILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
ILR G LE P +S +V A + +NAVL +++
Sbjct: 1 ILRLGALEW--LEGKPDHARVSPWVEEAKRRY-PGLAGLVNAVLRRLA 45
>gi|325983531|ref|YP_004295933.1| sun protein [Nitrosomonas sp. AL212]
gi|325533050|gb|ADZ27771.1| sun protein [Nitrosomonas sp. AL212]
Length = 425
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
ES + + +GV+ + ++ L + D LC +L + +
Sbjct: 29 WRAESSLSKQQRGAVQDLSYGVLRFYGQLGAVLDILLKKPLR----DKSLCHLLLVSLYQ 84
Query: 115 LIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
L +P V + + V + +NAVL R++E
Sbjct: 85 LQYSRVLPHTV-VDQAVSASRCLVKGSGMQGVVNAVLRNFIRQQE 128
>gi|224543281|ref|ZP_03683820.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM
15897]
gi|224523814|gb|EEF92919.1| hypothetical protein CATMIT_02481 [Catenibacterium mitsuokai DSM
15897]
Length = 51
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
+ +IL EL+E + ++I+E V A + D KFIN VL +
Sbjct: 1 MEQAILLVATCELLESE-LDKSIVINEAVINAKQYCDEDSYKFINGVLTAI 50
>gi|237749113|ref|ZP_04579593.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
gi|229380475|gb|EEO30566.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes OXCC13]
Length = 443
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Query: 50 CADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS--CLTEKWSFSRLDMILCSI 107
A + + I + + + LI + +
Sbjct: 41 SALASVFSHPKMDAATRGAIQDIAYLTERKLGLCEFLIEQLTRQPPSPPLLKTLLASSLA 100
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEI 159
L G + + P + + V A +NAVL + R++EI
Sbjct: 101 LLVGENDEADLKYEPY-TTVDQAVEAAASEGTLVRAKGLVNAVLRRFLREKEI 152
>gi|315497067|ref|YP_004085871.1| sun protein [Asticcacaulis excentricus CB 48]
gi|315415079|gb|ADU11720.1| sun protein [Asticcacaulis excentricus CB 48]
Length = 464
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 19/143 (13%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR+AA+ L + + S F + + + V+
Sbjct: 44 AARVAAI-TLVEAALEKRSG-----------FDEAAASADFLKLSETERAFAGALALLVL 91
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA-HD 136
R +D +I + +LR G+ ++ VP +S V IA +
Sbjct: 92 RRLGQLDHVIHKKTQ-----KMPPEAVRQLLRIGMAQIFFM-QVPDFAAVSTTVKIAERE 145
Query: 137 FFYGDEPKFINAVLDKVSRKEEI 159
INA+L + R ++
Sbjct: 146 NKTRPFKGLINAILRGLIRDGKL 168
>gi|254172425|ref|ZP_04879100.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus sp. AM4]
gi|214033354|gb|EEB74181.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus sp. AM4]
Length = 451
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ + + ID +I+S L LD L ++LR G E+
Sbjct: 41 KDREKARGLAHAYVFEIEKWRGKIDFIINSVL-RGSKVEDLDPYLANLLRIGTFEIHFRK 99
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
VP + V + + F KF+NA++ + +
Sbjct: 100 -VPPAIATDSVVRVVKERFDFSRAKFVNALMHSIEK 134
>gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 421
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 19/145 (13%)
Query: 9 DLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEW 68
+S + AVQ + ++ +
Sbjct: 5 KFDISDTSTNSWDLAVQLMEAYLSADNKADWLLEQLPD-------------SISRQIRAA 51
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +G + + L + + +IL E+ ++ +
Sbjct: 52 SQTRFYGAIRHGHRCRAALKPHLR-----KQPRPRVEAILLVAGAEICTEAEKAPKI-VH 105
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKV 153
V A E INA+L K+
Sbjct: 106 HAVDRAKQLVKSGELGLINALLRKL 130
>gi|326319222|ref|YP_004236894.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376058|gb|ADX48327.1| sun protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ + R+ + + L + R+D +LCS L G ++++
Sbjct: 58 QALFFAVLRQLGRAEALRAQLAPRRPKPRVDALLCSTLALGWQAGAA--PYEPFTLVNQA 115
Query: 131 VCIAHDFF-YGDEPKFINAVLDKVSRKEEIKRSGCVS 166
V A + F+NA L + R+ + + S
Sbjct: 116 VEAAKRHAATRGQAAFVNACLRRFLRERDALVAATES 152
>gi|163849994|ref|YP_001638037.1| Fmu (Sun) domain-containing protein [Methylobacterium extorquens
PA1]
gi|163661599|gb|ABY28966.1| Fmu (Sun) domain protein [Methylobacterium extorquens PA1]
Length = 425
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
R I +++ L + D L I +V + V +A
Sbjct: 42 FRRLGFIKAALAARLRDGLP---EDRPHLLALLVTGAAQILDLAVADHAAVDLSVRLAKA 98
Query: 137 FFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL +++R+ + R+ +
Sbjct: 99 DPQLQHLVPLVNAVLRRIARERDAIRAQESDPLA 132
>gi|125718645|ref|YP_001035778.1| rRNA methyltransferase RsmB [Streptococcus sanguinis SK36]
gi|125498562|gb|ABN45228.1| RRNA methyltransferase RsmB, putative [Streptococcus sanguinis
SK36]
Length = 355
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 109 RAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ +++ +P + E + IA KF NA+L ++ R+
Sbjct: 1 MLSLYQMLYLDKIPQHAAVHEAIEIAKIRK-RGSEKFANALLRRIERE 47
>gi|269123621|ref|YP_003306198.1| Fmu (Sun) domain-containing protein [Streptobacillus moniliformis
DSM 12112]
gi|268314947|gb|ACZ01321.1| Fmu (Sun) domain protein [Streptobacillus moniliformis DSM 12112]
Length = 422
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 37 TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWS 96
E+I + Y + + Y + + +++ + +ID +I
Sbjct: 11 LDEVIEN-KKYSNLQLKYMFENNSYTKGEKAFLNNMLNVTLKNLIYIDYVILKLARSIKR 69
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
++ ILR + +++ + V I E V + + + FIN+ L RK
Sbjct: 70 KTKQ------ILRLSIAQILYTSTDIAGV-IYEAVELGKEE-NIYQANFINSTLRNFIRK 121
Query: 157 EEI 159
++
Sbjct: 122 KDE 124
>gi|254483320|ref|ZP_05096551.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
gi|214036415|gb|EEB77091.1| ribosomal RNA small subunit methyltransferase B [marine gamma
proteobacterium HTCC2148]
Length = 433
Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
D + + +G + + ++ L++ L + D + +L G+ +L +
Sbjct: 31 EKVAPRDKGLLQQLCYGTLRQAPRLEALLNQLLDK--PLREKDRDVHGLLLCGLYQLEDT 88
Query: 119 HSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+P +S V NAVL + R+ +
Sbjct: 89 R-IPDHAAVSATVAATKALKKPWAKGLSNAVLRRFLRERD 127
>gi|254467784|ref|ZP_05081190.1| sun protein [beta proteobacterium KB13]
gi|207086594|gb|EDZ63877.1| sun protein [beta proteobacterium KB13]
Length = 412
Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + + I++G + D ++ + + + D ++ +L + ++
Sbjct: 30 KEENNKNFIKDIVYGGIRDFYLNDYILKKFVKKDIN----DHLIKYLLMNTIYQINHQSK 85
Query: 121 VPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
V ++E V A + +NAVL R+++
Sbjct: 86 AEFTV-VNEAVKAAKKI-NNNFYNLVNAVLRNYLREKD 121
>gi|299531357|ref|ZP_07044767.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
gi|298720764|gb|EFI61711.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
S44]
Length = 461
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P ++++ V A + + FINA L + R+ + S
Sbjct: 106 PYPPFTLVNQAVEAAKNGAARAQSGFINACLRRFLRERDALVSA 149
>gi|264676496|ref|YP_003276402.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
gi|262207008|gb|ACY31106.1| sun, tRNA and rRNA cytosine-C5-methylase [Comamonas testosteroni
CNB-2]
Length = 461
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P ++++ V A + + FINA L + R+ + S
Sbjct: 106 PYPPFTLVNQAVEAAKNGAARAQSGFINACLRRFLRERDALVSA 149
>gi|221069396|ref|ZP_03545501.1| sun protein [Comamonas testosteroni KF-1]
gi|220714419|gb|EED69787.1| sun protein [Comamonas testosteroni KF-1]
Length = 461
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P ++++ V A + + FINA L + R+ + S
Sbjct: 106 PYPPFTLVNQAVEAAKNGAARAQSGFINACLRRFLRERDALVSA 149
>gi|119385444|ref|YP_916500.1| Fmu (Sun) domain-containing protein [Paracoccus denitrificans
PD1222]
gi|119375211|gb|ABL70804.1| Fmu (Sun) domain protein [Paracoccus denitrificans PD1222]
Length = 535
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGD--EPKFINAVLDKVSRK 156
R + ILR +E++ P ++ V +A +NAVL K++
Sbjct: 185 RPRPEIMRILRLAAVEMLALGEAPHGA-VNAAVALARASGRKGQAAAGMVNAVLRKIAGA 243
Query: 157 EEIKRSGCVSAI 168
E +S
Sbjct: 244 AEAW--ARLSPQ 253
>gi|149203489|ref|ZP_01880459.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius sp. TM1035]
gi|149143322|gb|EDM31361.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius sp. TM1035]
Length = 422
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 25/161 (15%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + AR AA L ++ G +++I+ D +
Sbjct: 1 MKKPKLTARSAAAHLLDRVLGEGRLMSDLIA------------GGALEPLAPADRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + D L+S L + + ++LR +EL + ++++ V
Sbjct: 49 LASETLRGLARADRLLSRHLRKGPPL-----PVQNVLRLATVELAQGGES--HGVVNDAV 101
Query: 132 CI-AHDFFYGDEPKFINAVLDKVSRK-----EEIKRSGCVS 166
I + + +NAVL KV+ + ++++ G
Sbjct: 102 DIIGQSPRHANLKGLVNAVLRKVAEEAPRSWNDLRQPGLPD 142
>gi|319940730|ref|ZP_08015072.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
gi|319805881|gb|EFW02648.1| hypothetical protein HMPREF9464_00291 [Sutterella wadsworthensis
3_1_45B]
Length = 456
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 16/159 (10%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
M NK + R +Q Q I ++ + V
Sbjct: 2 MDQAPNKNTTDKAANR-------LQLPLQQLI--EFAADVRRRMLEGASLSSALETVSIG 52
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ I++ V+ R+ + + L+ + ++ +I
Sbjct: 53 LSAQARAALQSIVYDVIRRRAFSNAAAAGLLSSPPPPPVMGLLEIAIALVVEGRY----- 107
Query: 121 VPVEVIISEYVCIAHD-FFYGDEPKFINAVLDKVSRKEE 158
+++E V A + INAVL + R+ E
Sbjct: 108 -SDFTLVNETVNAARNNRRTVRFAGLINAVLRRFLRERE 145
>gi|303240317|ref|ZP_07326836.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
gi|302592227|gb|EFL61956.1| Fmu (Sun) domain protein [Acetivibrio cellulolyticus CD2]
Length = 471
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 41/171 (23%)
Query: 3 IQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYL 62
+ +KK+L++ R A++ L I G ++ ++S Y
Sbjct: 1 MGTSKKELRI-------REIALEILNDITENGSNSNLVLSNYFNKYTLDIN--------- 44
Query: 63 HVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVP 122
D + ++ G + K I I S + +ILR GV E +P
Sbjct: 45 --DEIFITSLVLGTLRLKVSIQYAIEVPKKIAKKISPC---IMNILRLGVYEHFYGDVIP 99
Query: 123 VE--------------------VIISEYVCIAHDFFYGDEPKFINAVLDKV 153
I+EYV IA + AVL ++
Sbjct: 100 NPDESFTSYTGNEPYRIEKPKCKYINEYVRIAEKCGQRSGALVVEAVLSRL 150
>gi|281356162|ref|ZP_06242655.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
gi|281317531|gb|EFB01552.1| Fmu (Sun) domain protein [Victivallis vadensis ATCC BAA-548]
Length = 409
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 20/143 (13%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AV L ++ + + + Y ++ RK
Sbjct: 13 EEAVAGLAAVEAGEANLDDFLDFRLQYPEL---------------RRSISNLLFLCFRRK 57
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ ++ I + +L A + ++ + E ++ V +
Sbjct: 58 RFLEGWIGRLAARPPR-----PAVRRLLTAVLAQITFQTGIAPESAVNIAVGLVKHSGKL 112
Query: 141 DEPKFINAVLDKVSRKEEIKRSG 163
E KF+NAVL + + +
Sbjct: 113 QEAKFVNAVLRRALEQPQPVPEA 135
>gi|46203265|ref|ZP_00051777.2| COG0144: tRNA and rRNA cytosine-C5-methylases [Magnetospirillum
magnetotacticum MS-1]
Length = 188
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
R I +++ L + R + L I +V + V +A
Sbjct: 71 FRRLGFIRAALAARLRDGLPDDRPHL---LALLVTGAAQILDLAVADHAAVDLSVRLAKA 127
Query: 137 FFY-GDEPKFINAVLDKVSRKEEIKRSGCVSAI 168
+NAVL +++R+ + R+ +
Sbjct: 128 DPQLQHLAPLVNAVLRRIARERDAIRAEEGDPL 160
>gi|120613161|ref|YP_972839.1| sun protein [Acidovorax citrulli AAC00-1]
gi|120591625|gb|ABM35065.1| sun protein [Acidovorax citrulli AAC00-1]
Length = 461
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEY 130
+ + R+ + + L + R+D +LCS L G ++++
Sbjct: 58 QALFFAVLRQLGRAEALRAQLAPRRPKPRVDALLCSTLALGWQAGAA--PYEPFTLVNQA 115
Query: 131 VCIAHDFF-YGDEPKFINAVLDKVSRKEEIKRSGCVS 166
V A + F+NA L + R+ + + S
Sbjct: 116 VEAAKRHAATRGQAAFVNACLRRFLRERDALVAATDS 152
>gi|329574298|gb|EGG55872.1| putative transcription antitermination protein NusB [Enterococcus
faecalis TX1467]
Length = 92
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 11 KLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFR 70
K R R A+QAL+ +D + Y D V + +
Sbjct: 3 KTELTRHEIREKALQALFPLDFN---ADLTKQDAIDYALAYDNREIVSEDGEDLVPTYLD 59
Query: 71 VIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
+++ GV RK +D +I++ L WS RL
Sbjct: 60 LLVGGVCSRKAELDEVITNHLGNNWSMQRLA 90
>gi|260432196|ref|ZP_05786167.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
gi|260416024|gb|EEX09283.1| Fmu [Silicibacter lacuscaerulensis ITI-1157]
Length = 387
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+++ AR +A+ L QI G +E ++ D +
Sbjct: 1 MTNTPTAARRSAIYLLDQILGEGRLLSECLA------------AGALDRLAPEDRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L+ L + + + LR G +EL + +++ V
Sbjct: 49 LTLETLRGLERADRLLEGHLRRTPAL-----TVQNALRLGTVELCQGE--AAHGVVNAMV 101
Query: 132 CIA-HDFFYGDEPKFINAVLDKVSRKEEIKRS 162
I +G +NAVL K++ +
Sbjct: 102 EIVGRSRKHGRLKGLVNAVLRKIAAEGPEAWP 133
>gi|89056531|ref|YP_511982.1| Fmu (Sun) [Jannaschia sp. CCS1]
gi|88866080|gb|ABD56957.1| Fmu (Sun) [Jannaschia sp. CCS1]
Length = 410
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 9/108 (8%)
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ + V+ +D +I T + + + ++LR G +EL+
Sbjct: 31 AEAARANRLALSVLRNLDAVDAVIKPYTTR-----KPQIGVHNLLRLGAVELLVNGEDAH 85
Query: 124 EVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
V +S+ V IA +NA+L K++ E + + +
Sbjct: 86 GV-VSDIVGIAKTQPHTRKASGMVNAILRKIA--VEGAEAFAKAPPQR 130
>gi|134284097|ref|ZP_01770791.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
gi|134244549|gb|EBA44653.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
pseudomallei 305]
Length = 624
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 9/163 (5%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT RL+A+ + + +D + + A
Sbjct: 156 MTQTRPSSSRASGAPARAPRLSALHLVPDSLGFALDGAAQAVDAVDRGAALPAALAAVHA 215
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ S + I + M R+ D LI+ + + +++C+ E
Sbjct: 216 ALPSNAQAASRGAIQDIGYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCAFALLVDDEH 275
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
+ ++ + V I +NAVL + R+
Sbjct: 276 A---AYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 315
>gi|90421014|ref|ZP_01228918.1| putative ribosomal RNA methyltransferase [Aurantimonas
manganoxydans SI85-9A1]
gi|90334792|gb|EAS48568.1| putative ribosomal RNA methyltransferase [Aurantimonas
manganoxydans SI85-9A1]
Length = 472
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 12/152 (7%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
ARL A + L I S ++ A D + II +
Sbjct: 40 ARLVATKLLSAIVDARTSADGLLD--------AAGGHPGFRALEGRDQGLVKAIILSALR 91
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+ I + +CL L IL G +++ + D
Sbjct: 92 FRGTISRALDACLDR--PLPPNAAALKHILHVGATQILFLDVPDSAAVDLAVAAANVDSR 149
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
INAVL ++SR+++ R V+ T+
Sbjct: 150 SRRFAGMINAVLRRLSREKDALR--EVATATE 179
>gi|323137517|ref|ZP_08072594.1| sun protein [Methylocystis sp. ATCC 49242]
gi|322397143|gb|EFX99667.1| sun protein [Methylocystis sp. ATCC 49242]
Length = 471
Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 4/118 (3%)
Query: 43 EYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM 102
F A+ + D+ R I + R I ++S L + R
Sbjct: 58 HRLDECFSANAVPSRLTGLDPRDVALTRSIATVSLRRLGVIRHVLSELLEKG--LPRQAG 115
Query: 103 ILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
L L A +L+ + + V G +N VL + R+ E
Sbjct: 116 RLEYTLIAAAAQLLFLDAAD-HAAVDLAVRATRLEPKTGAFAGLVNGVLRNLLRRREE 172
>gi|85703964|ref|ZP_01035067.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius sp. 217]
gi|85671284|gb|EAQ26142.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius sp. 217]
Length = 422
Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 50/139 (35%), Gaps = 20/139 (14%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AAV L ++ G +E+I+ D + + +
Sbjct: 8 ARSAAVHLLDRVLGEGRLMSELIA------------GGALDALSPPDRARAQRLATDTLR 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDF 137
DLL+S L + + ++LR +EL + +++E V I
Sbjct: 56 GLDRADLLLSRHLRKAPPL-----PVQNVLRLATVELAQGGES--HGVVNEAVETIGQSP 108
Query: 138 FYGDEPKFINAVLDKVSRK 156
+ +NAVL K++ +
Sbjct: 109 RHAKLKGLVNAVLRKMTEE 127
>gi|71905670|ref|YP_283257.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
gi|71845291|gb|AAZ44787.1| Fmu, rRNA SAM-dependent methyltransferase [Dechloromonas aromatica
RCB]
Length = 419
Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ +++G + D + L + + ++L + L V +
Sbjct: 45 VQDLVYGSLRAYGRGDFFLGRLLDKPLDVEE----VRALLLVSIYRLETRPDAAHTV-VD 99
Query: 129 EYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ V A + G +NAVL R++E
Sbjct: 100 QAVSAAGELANGRFRGLVNAVLRNFLRQQE 129
>gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 452
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 2/120 (1%)
Query: 31 DIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC 90
++ E + R C L E V H +M R + +D + +
Sbjct: 8 ELTARVFVEWEETRRSLRECVKKVLLNEGVRDHRVWGTIHAYCFELMKRLRTVDAFLEAT 67
Query: 91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVL 150
+ LD + + LR G E+ V + +E V I + +F+NAVL
Sbjct: 68 I-RNAKLFDLDPWVRNALRVGTFEMKFND-VKPAIATNEAVKIVVECVGEGPARFVNAVL 125
>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
3638]
gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
Length = 450
Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
VE + + + ID +I+S L LD L ++LR GV E+
Sbjct: 38 VEGKDKEKARGIAHAYVFEIEKWRAKIDFIINSVL-RGSKVEDLDPYLANLLRIGVFEMK 96
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
P + V + + F KF NA+L +V +
Sbjct: 97 FKKINP-AIATDSIVRVVKEKFDLTRAKFANAILREVEK 134
>gi|255020224|ref|ZP_05292293.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
gi|254970366|gb|EET27859.1| Ribosomal RNA small subunit methyltransferase B [Acidithiobacillus
caldus ATCC 51756]
Length = 443
Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR 161
P +++++V +NA+L + R+ E
Sbjct: 89 QRPDFAVVNDWVGACALLHKEWARGLVNALLRRYLREREPLE 130
>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 451
Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ + + ID +I+S L LD L ++LR G E+
Sbjct: 41 KDREKARGLAHAYVFEIEKWRAKIDFIINSVLKGS-KVEDLDPYLANLLRIGTFEIHFRK 99
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
VP + + + + F KF+NA++ + +
Sbjct: 100 -VPPAIATDSIIRVVKERFDFSRAKFVNALMHSIEK 134
>gi|303256329|ref|ZP_07342345.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|330999024|ref|ZP_08322749.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
gi|302861058|gb|EFL84133.1| ribosomal RNA small subunit methyltransferase B [Burkholderiales
bacterium 1_1_47]
gi|329575766|gb|EGG57292.1| ribosomal RNA small subunit methyltransferase B [Parasutterella
excrementihominis YIT 11859]
Length = 434
Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH-DFFYGDEPKFINAVLDKVSR 155
SR L L L+ +++E V A F+NA+L + R
Sbjct: 65 ISRAPADDVLALIELALGLLSEGKEKPFTVVNEAVAAAKHSRKMVKAANFVNAILRRFGR 124
Query: 156 KE 157
++
Sbjct: 125 EK 126
>gi|269140542|ref|YP_003297243.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|267986203|gb|ACY86032.1| 16S rRNA methyltransferase B [Edwardsiella tarda EIB202]
gi|304560327|gb|ADM42991.1| Ribosomal RNA small subunit methyltransferase B [Edwardsiella tarda
FL6-60]
Length = 430
Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 16/131 (12%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R A + L + G S + ++ D + + G +
Sbjct: 9 RAIAARTLSAVLDQGQSLSSVLP-------------SAAQPLSDKDRALLQELCFGTLRV 55
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
++ ++ + + + + L +L G+ +LI +P ++E V A
Sbjct: 56 LPQLEWIVQQLMAKVLTGKQRP--LHYLLLVGLYQLIYTR-IPPHAALAETVDGAVALKR 112
Query: 140 GDEPKFINAVL 150
IN VL
Sbjct: 113 PQLKGLINGVL 123
>gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. SK209-2-6]
gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseobacter sp. SK209-2-6]
Length = 432
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + AR + L Q+ G +E + R D
Sbjct: 1 MTSPKSGPKPGPKSDGIPARRTVIYLLDQVLGEGRLLSECYAAGALERLAPDE------- 53
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
+ + + + D ++ L + + + LR G +EL +
Sbjct: 54 -----RARAQRLAAETLRSLERADRILQKHLKKSTPL-----TVHNALRLGTVELCQ--G 101
Query: 121 VPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
+++ V I + +G +NAVL KV+ + +
Sbjct: 102 GAAHGVVNAMVTIISKHRRHGKLKGLVNAVLRKVAEQGPAEWQ 144
>gi|261885487|ref|ZP_06009526.1| transcription antitermination protein NusB [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 32
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+I+E + +A++ +FIN VLD +S+
Sbjct: 1 MINEAILLANELGSDSSTRFINGVLDAISK 30
>gi|160895962|ref|YP_001561544.1| sun protein [Delftia acidovorans SPH-1]
gi|160361546|gb|ABX33159.1| sun protein [Delftia acidovorans SPH-1]
Length = 462
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P ++++ V A + FINA L + R+ + +
Sbjct: 107 PYPPFTLVNQTVEAAKQGPTRAQSGFINACLRRFLRERDALVAA 150
>gi|91774540|ref|YP_544296.1| sun protein [Methylobacillus flagellatus KT]
gi|91708527|gb|ABE48455.1| sun protein [Methylobacillus flagellatus KT]
Length = 425
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 8/135 (5%)
Query: 30 IDIIGCSTTEIISEYETYRFC---ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLL 86
+ + + + + R +T + + + +G + ++ L
Sbjct: 1 MQVSQQLAAQAVGQVLDGRNLSVVLETLFQHQRDITPQQRAASQDLTYGTLRFYARLEAL 60
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
+ L + S D + +L + +L+ ++++ V A +
Sbjct: 61 LQQLLQKPLS----DAFIHHLLLVSLYQLVY-DRAGAHTVVNQAVLAAAKTRKTWAKGLV 115
Query: 147 NAVLDKVSRKEEIKR 161
NAVL R+ +
Sbjct: 116 NAVLRNFLRQRAMLE 130
>gi|294101395|ref|YP_003553253.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261]
gi|293616375|gb|ADE56529.1| Fmu (Sun) domain protein [Aminobacterium colombiense DSM 12261]
Length = 442
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 48 RFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
RF +++ V D +++ + R+ + + L + +
Sbjct: 18 RFASESLRKVSDRMTEGDRILASSLVYAALRRQTLWKKVCENFLRFPFDSLSWCTRHALV 77
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ A + IE V++S V E + +NAVL +V + +
Sbjct: 78 IGAAGI--IELRHFAPMVLVSALVDEIKKRGLEKEARIVNAVLHRVEERGK 126
>gi|226938995|ref|YP_002794066.1| sun protein [Laribacter hongkongensis HLHK9]
gi|226713919|gb|ACO73057.1| sun protein [Laribacter hongkongensis HLHK9]
Length = 412
Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 6/133 (4%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISS 89
+ I+ + D + + HG + R + + +
Sbjct: 1 MYQNQLLAARILDATLSGHNLTDVMSSEAAHITGDRRAQLLDLTHGSLRRYGRLRVKLDH 60
Query: 90 CLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAV 149
L + D ++ +L + +L + P I+ V A + +NAV
Sbjct: 61 LLERPLT----DPVVDRLLIVALYQLEATRAAPY-AIVDHAVRAASE-AAPRLKGLVNAV 114
Query: 150 LDKVSRKEEIKRS 162
L R+++
Sbjct: 115 LRNAQRRQDELEQ 127
>gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B
[Leptotrichia goodfellowii F0264]
gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B
[Leptotrichia goodfellowii F0264]
Length = 442
Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
Y YL + + II+ + +ID L+ + +
Sbjct: 29 KYSNIQLNHYFKTKNYLKKEKLFITNIINITIKNLIYIDYLLEKTVKNIQKRK-----IK 83
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+LR V +L + V+ E V +A + F+NA L V R ++
Sbjct: 84 QLLRISVAQLFFTEADNAGVL-YEAVEVAKII-NNHQSGFVNATLQSVLRNKDE 135
>gi|84515082|ref|ZP_01002445.1| ribosomal RNA small subunit methyltransferase B, putative
[Loktanella vestfoldensis SKA53]
gi|84511241|gb|EAQ07695.1| ribosomal RNA small subunit methyltransferase B, putative
[Loktanella vestfoldensis SKA53]
Length = 422
Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 59 SVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIEC 118
+ D + + + D ++ L + + LR G+ EL
Sbjct: 36 AQLAPDDRARAQRLATDALRGLDRADRMLKPYLK-----KPPGDHVMNALRLGLTEL--M 88
Query: 119 HSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+++ YV I A + NAVL +++ + + +T
Sbjct: 89 QGEAAHGVVNAYVEIVARNTRTQSMKGLTNAVLRRIADEGPEAWAKRAVPLT 140
>gi|167579362|ref|ZP_02372236.1| sun protein [Burkholderia thailandensis TXDOH]
Length = 470
Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQAL-----YQIDIIGCSTTEIISEYETYRFCADTEL 55
MT + R +A+ + + +D + + A
Sbjct: 1 MTQTRPSRSRASGAPARAPRPSALHLVPDSLGFALDGAAQAVDVVTRGAALPAALAAAHA 60
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
+ + + I + M R+ D LI+ + + +++C+ A +++
Sbjct: 61 TLPANARAASRGAIQDIAYRAMRRRGTADWLIAQLVAKAPPAHVHALLVCA--FALLVDD 118
Query: 116 IECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKE 157
E + ++ + V I +NAVL + R+
Sbjct: 119 DEHAAYAPFTVVDQAVTAIGARRECSFAKGLVNAVLRRFLRER 161
>gi|254486947|ref|ZP_05100152.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
gi|214043816|gb|EEB84454.1| rRNA methyltransferase RsmB [Roseobacter sp. GAI101]
Length = 423
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 20/157 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S AR +AV Y +D+ E V D +
Sbjct: 1 MSDTGVQARRSAV---YLLDM---------ILGEERLMSELLAAGVLDKLPPDDRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L+ L++ + + LR G +EL + +++ V
Sbjct: 49 LALDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVELCQ--GGAAHGVVNAMV 101
Query: 132 CI-AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ A G NAVL K++ + + S
Sbjct: 102 ELVATHKKLGHLKGLTNAVLRKIAAEGPEAWAALRSP 138
>gi|118594095|ref|ZP_01551442.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
gi|118439873|gb|EAV46500.1| sun; rRNA methylase [Methylophilales bacterium HTCC2181]
Length = 423
Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 7/135 (5%)
Query: 30 IDIIGCSTTEIISEYET-YRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
+ II E +++ V + I +G + + LI
Sbjct: 1 MHESQRYAAIIIDGVLDGNNLDHVFEKILKNPDDSVQQSQVKAITYGTLRYMGQSNYLIG 60
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ + +L S++ + +L + V + + V A + +NA
Sbjct: 61 KLIKN----KIENRVLESLIHVAIYQLTQEAHTDFTV-VDQAVRAAKKIDFRKS-NLVNA 114
Query: 149 VLDKVSRKEEIKRSG 163
VL R +E G
Sbjct: 115 VLRTFLRNKEKLIQG 129
>gi|296161366|ref|ZP_06844173.1| sun protein [Burkholderia sp. Ch1-1]
gi|295888352|gb|EFG68163.1| sun protein [Burkholderia sp. Ch1-1]
Length = 457
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + LI+ + + ++ CS++ E + ++
Sbjct: 52 VQDIAYRTMRRLATAEWLIAKLVKKAPPPHVGHVLACSLVLLIDDEANA--AYAPFTVVD 109
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ V IA +NAVL R+ E S
Sbjct: 110 QAVSAIAARRECAFAKGLVNAVLRTFLREREALLSAA 146
>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus
kodakarensis KOD1]
Length = 450
Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFRVIIHGVMDR 79
++ Y++ ++ E V D E + +
Sbjct: 1 MELFYRVSFQEVVADALMLVEERELSSKHALERVFKKVAGRDREKARGLAHAYVFEIEKW 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I+S L LD L ++LR G E+ P V + + F
Sbjct: 61 RAKIDFIINSVLKGS-KVEDLDPYLANLLRIGTFEIHFRKVPPALAT-DSIVRVVKEKFD 118
Query: 140 GDEPKFINAVLDKVSR 155
KF+NA++ ++ +
Sbjct: 119 FSRAKFVNALMHEIEK 134
>gi|171464329|ref|YP_001798442.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193867|gb|ACB44828.1| Fmu (Sun) domain protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 417
Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 52/155 (33%), Gaps = 24/155 (15%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT Q + L LS A QA+ ++ + G S TE++ + + + L ++
Sbjct: 1 MTDQKTLRSLPLSEAIT----IAAQAISEV-MDGRSLTEVLDQLDAHERPIVQSLSFDA- 54
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
R + + K +D +L + + S
Sbjct: 55 --------LRKWVRS---------HELIKQFAPKTPPREVDHLLSVGIALFLQNEAGGKS 97
Query: 121 VPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVS 154
P I+ + V ++ +NAVL KVS
Sbjct: 98 YPAYTIVDQAVKACGEYDKTMYAKGLVNAVLRKVS 132
>gi|315122151|ref|YP_004062640.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313495553|gb|ADR52152.1| Fmu (Sun) domain protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 443
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 12/141 (8%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
ARL A L S T + H D R I+ +
Sbjct: 6 NARLVAAHLL--------SCVTRKRISLTCLLDPERGDIAFRKLSHKDQALVRAILSTTL 57
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
ID + L S S+ L + R + +++ V + V A
Sbjct: 58 RFLPRIDAV--LDLLLVSSLSKKKQSLRQLFRISIAQILYLDVADYAV-VDLAVEQAKRD 114
Query: 138 FYGD-EPKFINAVLDKVSRKE 157
+N++L +VSR++
Sbjct: 115 QENRHFSNLVNSILRRVSREK 135
>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
VE + + + ID +++S L LD L ++LR G E+
Sbjct: 37 RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVLKGS-RVEDLDTYLANLLRIGTFEM 95
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
V + V + + F KF NAVL +V +
Sbjct: 96 KF-KGVNPAIATDSVVRVVKEKFDLTRAKFANAVLREVEK 134
>gi|197106963|ref|YP_002132340.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
gi|196480383|gb|ACG79911.1| rRNA methyltransferase RsmB [Phenylobacterium zucineum HLK1]
Length = 598
Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIA-HDFFYGDEPKFINAVLDKVSRK 156
+ +LR G +L+ P +S V +A +NAVL +SR+
Sbjct: 245 KPPPDRIVQVLRLGAAQLLVLK-TPAHAAVSATVDLAASQKGGQAFKGLVNAVLRGLSRE 303
>gi|83941724|ref|ZP_00954186.1| ribosomal RNA small subunit methyltransferase B, putative
[Sulfitobacter sp. EE-36]
gi|83847544|gb|EAP85419.1| ribosomal RNA small subunit methyltransferase B, putative
[Sulfitobacter sp. EE-36]
Length = 423
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 20/157 (12%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+S AR +AV Y +D+ E D +
Sbjct: 1 MSDTGVQARRSAV---YLLDM---------ILGEERLMSELLSAGALDKLPPDDRARAQR 48
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + + D L+ L++ + + LR G +EL + +++ V
Sbjct: 49 LAMDTLRGMERADRLLQKHLSKYPPL-----TVRNALRVGTVELCQ--GGAAHGVVNAMV 101
Query: 132 CI-AHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+ A G NAVL K++ + + +
Sbjct: 102 ELVATHKKLGHLKGLTNAVLRKIAAEGPEAWAALRAP 138
>gi|218659414|ref|ZP_03515344.1| RNA methyltransferase - sun protein [Rhizobium etli IE4771]
Length = 311
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 121 VPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
+P + V A+ K +NAVL ++ R++E + G V+
Sbjct: 1 MPDHSAVDLAVEQANQDPRNRRFAKLVNAVLRRLGREKEEVLAEIGKVAP 50
>gi|91790269|ref|YP_551221.1| sun protein [Polaromonas sp. JS666]
gi|91699494|gb|ABE46323.1| sun protein [Polaromonas sp. JS666]
Length = 445
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD-F 137
R + L ++ D +LC L E ++ + V A
Sbjct: 54 RWLGRAEALRQQLAKRPPPPEADALLCVALALIWTEHDA--PYTAHTLVDQAVEAAKRGD 111
Query: 138 FYGDEPKFINAVLDKVSRKEE 158
+ FIN L + R+ +
Sbjct: 112 ATQHQASFINGCLRRFLRERD 132
>gi|91781434|ref|YP_556640.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
gi|91685388|gb|ABE28588.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia xenovorans
LB400]
Length = 457
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + LI+ + + + + A +++ + ++
Sbjct: 52 VQDIAYRTMRRLATAEWLIAKLVKKAPP--PHVGHVLACSLALLVDDEANAAYAPFTVVD 109
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ V IA + +NAVL R+ E S
Sbjct: 110 QAVSAIAARREFAFAKGLVNAVLRTFLRERETLLSAA 146
>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
Length = 437
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ + ++ + + F LD ++LR V E+ V + V IA +
Sbjct: 56 ETLKRLNAIDYFLKSTLKKFDGLDPFTRNLLRIAVYEMKY-KGVHPALATDSAVRIARER 114
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSAIT 169
+NAVL KV K +I+ G + ++
Sbjct: 115 GK---ASLVNAVLRKV-EKLDIQAEGRLKELS 142
>gi|282855986|ref|ZP_06265277.1| Fmu [Pyramidobacter piscolens W5455]
gi|282586205|gb|EFB91482.1| Fmu [Pyramidobacter piscolens W5455]
Length = 439
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 62 LHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSV 121
D + + ++ R + + + + + + G L E
Sbjct: 40 SPPDRTLAASLAYALVRRLS-LWEHLREKFLLPRP-EKFSQSVRAAVLMGAAGLTELEKF 97
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIK 160
V+IS + + +NAVL +V + +
Sbjct: 98 APAVLISSLIEWTKTR-DPRGARVVNAVLRRVLEEGPAE 135
>gi|13507769|ref|NP_109718.1| hypothetical protein MPN030 [Mycoplasma pneumoniae M129]
gi|2496266|sp|P75084|Y030_MYCPN RecName: Full=Uncharacterized protein MG027 homolog
gi|1673783|gb|AAB95772.1| conserved hypothetical protein [Mycoplasma pneumoniae M129]
Length = 168
Score = 42.1 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Query: 16 RGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R+A V+ ++ + + + +I + + Y E + + + +
Sbjct: 31 RTQRRIAIVEFIFATLFFLPKTADQIQAAFLDY---DVPERPLNDWQKEIVKVFSERCVE 87
Query: 75 GV--MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ +Q + K S ++D++ +++ + E + ++ISE +
Sbjct: 88 FIELIENQQQRNQAEVQSKYNKVSGKKVDLLTKAVILCALSEQ-HAQATDKPLLISEALL 146
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
I + E K +A+LDK+
Sbjct: 147 IMDHYSQVPEKKQTHALLDKLL 168
>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 450
Score = 42.1 bits (97), Expect = 0.030, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 6/136 (4%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLE----WFRVIIHGVMDR 79
++ Y++ ++ E V D E + +
Sbjct: 1 MELFYRVSFQEVVADALMLVEERELSSKHALERVFKKVAGKDREKARGLAHAYVFEIEKW 60
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
+ ID +I+S L + LD L ++LR G E+ VP + + + F
Sbjct: 61 RAKIDFIINSVLKGS-TVEDLDPYLANLLRIGTFEIHFRK-VPPAIATDSIIRVVKGHFD 118
Query: 140 GDEPKFINAVLDKVSR 155
KF+NA++ ++ +
Sbjct: 119 FSRAKFVNALMHEIEK 134
>gi|260574499|ref|ZP_05842503.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
gi|259023395|gb|EEW26687.1| Fmu (Sun) domain protein [Rhodobacter sp. SW2]
Length = 427
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + + V+ + D ++ L + LR V+EL
Sbjct: 44 LSPSDRARAQRLALAVLRHIEPADRVLKPHLR-----KEPPEAVRIALRLAVVELA-VEH 97
Query: 121 VPVEVIISEYVCIAHD-FFYGDEPKFINAVLDKVS 154
+++ V + +NAVL KV+
Sbjct: 98 AAAHGVVNAAVSLMRLGKRTTHMAGLVNAVLRKVA 132
>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
Length = 450
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLEL 115
VE + + + ID +++S L LD+ L ++LR G E+
Sbjct: 37 RVEGKDKETARGIAHAYVFEIEKWRAKIDFILNSVL-RGSKVEDLDLYLANLLRIGTFEM 95
Query: 116 IECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
V + V + + F + KF NA+L +V +
Sbjct: 96 KF-KGVNPAIATDSVVRVVKEKFDLTKAKFANAILREVEK 134
>gi|162447338|ref|YP_001620470.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
gi|161985445|gb|ABX81094.1| transcription antitermination factor [Acholeplasma laidlawii PG-8A]
Length = 126
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ +I+G++D +H+D LISS + ++ RL+++ +I+R V L+ P E++I+E
Sbjct: 37 KEVINGMIDELEHVDFLISSTIKN-YTIDRLNLVDLAIIRVAVYALL-KEIDPAEIVINE 94
Query: 130 YVCIAHDFF---YGDEPKFINAVLDKVSRKEE 158
+ ++ ++ + KF N+++D + +K +
Sbjct: 95 AIELSKEYTDLDDEKQHKFNNSLIDNIYKKIK 126
>gi|83855202|ref|ZP_00948732.1| ribosomal RNA small subunit methyltransferase B, putative
[Sulfitobacter sp. NAS-14.1]
gi|83843045|gb|EAP82212.1| ribosomal RNA small subunit methyltransferase B, putative
[Sulfitobacter sp. NAS-14.1]
Length = 406
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 45 ETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMIL 104
E D + + + + D L+ L++ +
Sbjct: 5 EERLMSELLSAGALDKLPPDDRARAQRLAMDTLRGMERADRLLQKHLSKYPPL-----TV 59
Query: 105 CSILRAGVLELIECHSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ LR G +EL + +++ V + A G NAVL K++ + +
Sbjct: 60 RNALRVGTVELCQ--GGAAHGVVNAMVELVATHKKLGHLKGLTNAVLRKIAAEGPEAWAA 117
Query: 164 CVSA 167
+
Sbjct: 118 LRAP 121
>gi|20095011|ref|NP_614858.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888274|gb|AAM02788.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 431
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
+ L L + LR G E+ P V V + + +F NA+L +V R
Sbjct: 53 TVEDLHPYLRNALRVGTWEIHWRREHPGPVT-KAVVDVVKERVGPKHARFANAILRQVER 111
>gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
Length = 488
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 39/164 (23%), Gaps = 34/164 (20%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R A AA + L + E++ + +
Sbjct: 4 PVEARTTAWPAAARLLARWLDRRERVDELLESL-------------GGSLTGTERARCQH 50
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWS--------------FSRLDMILCSILRAGVLELIE 117
++ G + ID I ++ + RA
Sbjct: 51 LVFGAIRHFGRIDAAIGRLVSHSPRFATRAVLLVAGFELIEARAERGGAPTRASEAGTTN 110
Query: 118 CHSVPVEV-------IISEYVCIAHDFFYGDEPKFINAVLDKVS 154
P V I+ V E + +NAV+ K++
Sbjct: 111 APDQPTPVVDGRVAKIVHHAVEQTKQLASPAEARMVNAVVRKLA 154
>gi|332524650|ref|ZP_08400849.1| Sun protein [Rubrivivax benzoatilyticus JA2]
gi|332107958|gb|EGJ09182.1| Sun protein [Rubrivivax benzoatilyticus JA2]
Length = 436
Score = 41.7 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
++ + V AH FINAVL + R+ + +
Sbjct: 87 PYADHTLVDQAVHAAHQR-TPVAAGFINAVLRRFVRERDKLAAAA 130
>gi|307728146|ref|YP_003905370.1| sun protein [Burkholderia sp. CCGE1003]
gi|307582681|gb|ADN56079.1| sun protein [Burkholderia sp. CCGE1003]
Length = 479
Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + LI+ + + ++ C++ E + ++
Sbjct: 74 VQDIAYRTMRRLGTAEWLIARLVKKAPPPHVGHVLACALALLIDDEASA--AYTPFTVVD 131
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEE 158
+ V I+ + +NAVL R+ E
Sbjct: 132 QAVRAISARREFTFAKGLVNAVLRNFLRERE 162
>gi|171060673|ref|YP_001793022.1| sun protein [Leptothrix cholodnii SP-6]
gi|170778118|gb|ACB36257.1| sun protein [Leptothrix cholodnii SP-6]
Length = 453
Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI----KRSGCVSAITQ 170
++ + V AH F+NAVL + R+ + + Q
Sbjct: 106 PYAPHTLVDQAVACAHVR-APASASFVNAVLRRFLRERDALVPRWEAADPVVRHQ 159
>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
Length = 450
Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 57 VESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELI 116
VE + + + ID +I+S L LD L ++LR GV E+
Sbjct: 38 VEGRDRETARGIAHAYVFEIEKWRAKIDFIINSVLKGS-RVEDLDPYLANLLRIGVFEMK 96
Query: 117 ECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSR 155
V + V + + F KF NA+L +V +
Sbjct: 97 F-KGVNPAIATDSIVRVVKEKFDLTRAKFANAILREVEK 134
>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
Length = 450
Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 24 VQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM---DRK 80
++ Y+I+ + E + D E R + H + ++
Sbjct: 1 MELFYKINFHELIADILSLIEERELSSKNALERTFKRVRGKDRERARGLAHAYIFEIEKW 60
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ I + + + LD L ++LR G+ E+ VP + V D +
Sbjct: 61 KRKIDFIGNSVLKGIKIEELDPYLANLLRIGIFEMKFKGVVP-AIATDSIVRAVKDKYDL 119
Query: 141 DEPKFINAVLDKV 153
KFINAVL V
Sbjct: 120 SRAKFINAVLRDV 132
>gi|319945038|ref|ZP_08019300.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
gi|319741608|gb|EFV94033.1| RNA methyltransferase Sun [Lautropia mirabilis ATCC 51599]
Length = 491
Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 99 RLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF----FYGDEPKFINAVLDKVS 154
R L + L+A + + PV VII + V + FINA L + +
Sbjct: 97 RQPPPLLAALQALGMAQLIDARRPVPVIIDQTVRAVGKLPEGAAHPGAAGFINATLRRFA 156
Query: 155 RKEEIKRSGCVSA 167
R+
Sbjct: 157 RE-RASLMAEPLP 168
>gi|145590255|ref|YP_001156852.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048661|gb|ABP35288.1| sun protein [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 438
Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 24/155 (15%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT DNKK L L A A QA+ ++ + G S TE++ E + + L ++
Sbjct: 1 MT--DNKKTLSLPL--SEAITIAAQAISEV-MSGRSLTEVLDELDAHERPIVQSLTFDA- 54
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
R + LI + + ++ +I +
Sbjct: 55 --------LRKWVRS--------HELIKQFVPKTPPPEVDHLLSVAIALFIRNDAD-DKG 97
Query: 121 VPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVS 154
V ++ + V ++ +NAVL KVS
Sbjct: 98 YAVHTVVDQAVRACGEYDQTLYAKGLVNAVLRKVS 132
>gi|260222513|emb|CBA32151.1| Ribosomal RNA small subunit methyltransferase B [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 457
Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 77 MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHD 136
I + L ++ +D +LC +L ++++ V A
Sbjct: 69 WRNMGR-AKAIRAQLAKRPPPVAVDTLLCLVLALVWDTSHAL--YDEFTLVNQAVECAKK 125
Query: 137 F-FYGDEPKFINAVLDKVSRKEEI 159
+ FINA L + R+ E
Sbjct: 126 TPSAAAQANFINACLRRFLREREA 149
>gi|332530506|ref|ZP_08406447.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
gi|332040075|gb|EGI76460.1| 16S rRNA methyltransferase B [Hylemonella gracilis ATCC 19624]
Length = 469
Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 120 SVPVEVIISEYVCIAHDFFY---GDEPKFINAVLDKVSRKE 157
++++ V A + F+NA L + R+
Sbjct: 101 DYDAHTLVNQAVEAAKRHGSRSVSNSAGFLNACLRRFLRER 141
>gi|254450298|ref|ZP_05063735.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
gi|198264704|gb|EDY88974.1| rRNA methyltransferase RsmB [Octadecabacter antarcticus 238]
Length = 410
Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + + + D +++ L + S + ++LR +EL
Sbjct: 24 LSPEDRARAQRLTTETLRGLARADRMLARFLAKTPPLS-----VRNVLRLCTVELA--GG 76
Query: 121 VPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+++ V +A +NAVL KV+ + + V+
Sbjct: 77 EAAHGVVNAGVEMVARSQRTSSMKGLVNAVLRKVAAEGPEGWAQLVTP 124
>gi|170694011|ref|ZP_02885167.1| sun protein [Burkholderia graminis C4D1M]
gi|170141083|gb|EDT09255.1| sun protein [Burkholderia graminis C4D1M]
Length = 479
Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + LI+ + + ++ C++ E + ++
Sbjct: 74 VQDIAYRTMRRLGTAEWLIAKLVKKAPPPHVGHVLACALALLIDDEASA--AYTPFTVVD 131
Query: 129 EYV-CIAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V I+ + +NAVL R+ +
Sbjct: 132 QAVGAISARREFAFAKGLVNAVLRNFLRERDA 163
>gi|329114269|ref|ZP_08243031.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
pomorum DM001]
gi|326696345|gb|EGE48024.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
pomorum DM001]
Length = 462
Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ L G +L+ P + V + NAVL KV+ +
Sbjct: 111 KEPPEPVRVALMIGCAQLLFLE-TPPHAAVGTTVSLLRRRKLAPFAGLANAVLRKVAAEG 169
Query: 158 E 158
+
Sbjct: 170 Q 170
>gi|258541970|ref|YP_003187403.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01]
gi|256633048|dbj|BAH99023.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01]
gi|256636105|dbj|BAI02074.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-03]
gi|256639160|dbj|BAI05122.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-07]
gi|256642214|dbj|BAI08169.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-22]
gi|256645269|dbj|BAI11217.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-26]
gi|256648324|dbj|BAI14265.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-32]
gi|256651377|dbj|BAI17311.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654368|dbj|BAI20295.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-12]
Length = 440
Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
+ L G +L+ P + V + NAVL KV+ +
Sbjct: 89 KEPPEPVRVALMIGCAQLLFLE-TPPHAAVGTTVSLLRRRKLAPFAGLANAVLRKVAAEG 147
Query: 158 E 158
+
Sbjct: 148 Q 148
>gi|253997546|ref|YP_003049610.1| sun protein [Methylotenera mobilis JLW8]
gi|253984225|gb|ACT49083.1| sun protein [Methylotenera mobilis JLW8]
Length = 432
Score = 40.5 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 12/135 (8%)
Query: 30 IDIIGCSTTEIISEYETYRFCADTELDVESVYLHV---DLEWFRVIIHGVMDRKQHIDLL 86
+ I + + + R S++ + + +G + ID
Sbjct: 1 MYISQQIAADAVHQVFAGRNLTIALPAALSLFPNATPQQKGAAADLSYGTLRFYGEIDAY 60
Query: 87 ISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV----CIAHDFFYGDE 142
+ + L + + R + ++L + +L ++++ V +
Sbjct: 61 LRALLEKPLADER----IHALLLVAIYQLRH-DKADAFTVVNQAVHAVSQLRRPAVKAWA 115
Query: 143 PKFINAVLDKVSRKE 157
+NAVL R++
Sbjct: 116 KGLVNAVLRNFLRQQ 130
>gi|323524427|ref|YP_004226580.1| sun protein [Burkholderia sp. CCGE1001]
gi|323381429|gb|ADX53520.1| sun protein [Burkholderia sp. CCGE1001]
Length = 479
Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + LI+ + + ++ C++ E + ++
Sbjct: 74 VQDIAYRTMRRFGTAEWLIARLVKKAPPPHVGHVLACALALLIDDEASA--AYTPFTVVD 131
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V I+ + +NAVL R+ ++
Sbjct: 132 QAVRAISARREFSFAKGLVNAVLRNFLRERDV 163
>gi|237746959|ref|ZP_04577439.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
gi|229378310|gb|EEO28401.1| tRNA and rRNA cytosine-C5-methylase [Oxalobacter formigenes HOxBLS]
Length = 441
Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + + + + L T L +L L + E P +
Sbjct: 60 IQDIAYHTLRQLGLVSFLTRKLTTRPPEPVMLQSLLHCALALLIPENNTLRYEPY-TTVD 118
Query: 129 EYVCIAHD-FFYGDEPKFINAVLDKVSRKE 157
+ V A +NAVL + R++
Sbjct: 119 QAVEAAAAIRVLRKAKGLVNAVLRRFLREQ 148
>gi|222112408|ref|YP_002554672.1| sun protein [Acidovorax ebreus TPSY]
gi|221731852|gb|ACM34672.1| sun protein [Acidovorax ebreus TPSY]
Length = 457
Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG 163
++++ V A F+NA L + R+ + +
Sbjct: 100 PYAPFTLVNQAVEAAKRHPATRAQASFVNACLRRFLRERDTLVAA 144
>gi|146319475|ref|YP_001199187.1| transcription termination factor [Streptococcus suis 05ZYH33]
gi|145690281|gb|ABP90787.1| Transcription termination factor [Streptococcus suis 05ZYH33]
Length = 78
Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 12 LSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
+ + R R A+QA+ ++ Y R E +
Sbjct: 2 MKNNRHALRKCALQAIVSLEFGQEPVQAAQFSYLYDR--------EEEQEGVEIPLFLLN 53
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWS 96
+++GV D + +D +SS L +
Sbjct: 54 LVNGVADYRDDLDKELSSRLKQDGP 78
>gi|121596181|ref|YP_988077.1| sun protein [Acidovorax sp. JS42]
gi|120608261|gb|ABM44001.1| sun protein [Acidovorax sp. JS42]
Length = 457
Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG 163
++++ V A F+NA L + R+ + +
Sbjct: 100 PYAPFTLVNQAVEAAKRHPATRAQASFVNACLRRFLRERDTLVAA 144
>gi|260654218|ref|ZP_05859708.1| putative Sun protein [Jonquetella anthropi E3_33 E1]
gi|260630851|gb|EEX49045.1| putative Sun protein [Jonquetella anthropi E3_33 E1]
Length = 438
Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 19/136 (13%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
AA++ L ++ G ++ + D +++ + R
Sbjct: 5 EAALKVLSAVEKGG----------------FASQKLRDLPLDAPDRTLAASLVYACLRRA 48
Query: 81 QHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYG 140
+ L + + L+ G +E + V +++ V
Sbjct: 49 ELWRFLAFEY--LRPKPEGFSPSVRLALQLGAAGALELKNFAVPALVNGLVDWTKR-SDR 105
Query: 141 DEPKFINAVLDKVSRK 156
K +NAV+ ++ +
Sbjct: 106 GGAKVVNAVMRRLLDQ 121
>gi|284161464|ref|YP_003400087.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
gi|284011461|gb|ADB57414.1| Fmu (Sun) domain protein [Archaeoglobus profundus DSM 5631]
Length = 443
Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ + R ID ++ +C F + + + ++LR GV E+ V + V
Sbjct: 46 YVFEIEKRLNLIDFILRNCF---REFDKQNTVFKNLLRVGVYEMHF-KGVHPALATDSIV 101
Query: 132 CIAHDFFYGDEPKFINAVLDKVSR---KEEIKRSGCVSAIT 169
I F NAVL + + + ++ G V +
Sbjct: 102 RIVKQRFNLKMASLANAVLRRAEKFDYERRFRKLGKVKRLA 142
>gi|149200044|ref|ZP_01877070.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
HTCC2155]
gi|149136917|gb|EDM25344.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
HTCC2155]
Length = 407
Score = 40.1 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 42 SEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLD 101
+ +++ F + S DL+ + V +K+ ++ ++ S R
Sbjct: 19 NWTQSHNFDLELNRLRRSGNHESDLKRASQLCLCVFRKKESLEKIVKKL-----SQKRPR 73
Query: 102 MILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEE 158
+ +L + ++ + + V A E F+N+ K+ ++E
Sbjct: 74 GRVMHLLLPSMAAMLYMDKITPQGFADSAVEAAKKILSKHEANFLNSFFHKLVDQKE 130
>gi|225165824|ref|ZP_03727605.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
gi|224799937|gb|EEG18385.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV2]
Length = 201
Score = 40.1 bits (92), Expect = 0.098, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 42/136 (30%), Gaps = 10/136 (7%)
Query: 40 IISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
++ + + + + ++ G + I+ +I+ ++
Sbjct: 25 LVRWLDERARVDGLLAVLPANLGRTGRARCQNLVLGALRHLGRIEGIITPLMSRMPRAE- 83
Query: 100 LDMILCSILRAGVLELIECHSVPVEVII-SEYVCIAHDFFYGDEPKFINAVLDK----VS 154
+ ++ ELIE + V E + +NA++ K ++
Sbjct: 84 ----VQAVFLLAGYELIEGGGDGHVAKVAHHAVEQTKRLASQAEARMVNAIVRKLASALA 139
Query: 155 RKEEIKRSGCVSAITQ 170
++ R + + Q
Sbjct: 140 DEQPPGRLATAARLAQ 155
>gi|297537409|ref|YP_003673178.1| sun protein [Methylotenera sp. 301]
gi|297256756|gb|ADI28601.1| sun protein [Methylotenera sp. 301]
Length = 439
Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ + +G + ID + L + + R + ++L + +L+ + V ++
Sbjct: 43 AQDLSYGTLRFYGEIDAYLVQLLEKPLTDDR----INALLLVAIYQLLHDKADSFTV-VN 97
Query: 129 EYVCIAHDFFYG----DEPKFINAVLDKVSRKE 157
+ V +NA+L R++
Sbjct: 98 QAVHAVSQLKRPAPKSWAKGLVNAILRNFLRQK 130
>gi|239813610|ref|YP_002942520.1| sun protein [Variovorax paradoxus S110]
gi|239800187|gb|ACS17254.1| sun protein [Variovorax paradoxus S110]
Length = 442
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG-CVSAITQ 170
++ + V A FINA L + R+ + + + Q
Sbjct: 88 PYEPFTLVDQAVEAAKRNPATRAQASFINACLRRFLRERDELVAATDHEPVAQ 140
>gi|84500523|ref|ZP_00998772.1| ribosomal RNA small subunit methyltransferase B, putative
[Oceanicola batsensis HTCC2597]
gi|84391476|gb|EAQ03808.1| ribosomal RNA small subunit methyltransferase B, putative
[Oceanicola batsensis HTCC2597]
Length = 465
Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D + + + +D L++ L+ + LR EL
Sbjct: 76 RFDPADRARAQRLATETLRHLGRLDTLLAEHLSHMPPL-----PVLITLRIATYELA--T 128
Query: 120 SVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVS 154
S +++ V +A + NAVL KV+
Sbjct: 129 SEAAHGVVNSAVTHVAAMPRHNRLKGMTNAVLRKVA 164
>gi|301633674|gb|ADK87228.1| conserved hypothetical protein [Mycoplasma pneumoniae FH]
Length = 147
Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
Query: 16 RGIARLAAVQALYQ-IDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
R R+A V+ ++ + + + +I + + Y E + + + +
Sbjct: 10 RTQRRIAIVEFIFATLFFLPKTADQIQAAFLDY---DVPERPLNDWQKEIVKVFSERCVE 66
Query: 75 GV--MDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC 132
+ ++ +Q + K S ++D++ +++ + E + ++ISE +
Sbjct: 67 FIELIENQQQRNQAEVQSKYNKVSGKKVDLLTKAVILCALSEQ-HAQATDKPLLISEALL 125
Query: 133 IAHDFFYGDEPKFINAVLDKVS 154
I + E K +A+LDK+
Sbjct: 126 IMDHYSQVPEKKQTHALLDKLL 147
>gi|270609376|ref|ZP_06221647.1| N utilization substance protein B-like protein [Haemophilus
influenzae HK1212]
gi|270318117|gb|EFA29359.1| N utilization substance protein B-like protein [Haemophilus
influenzae HK1212]
Length = 38
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEII 41
MT Q K +K R AR VQALY + G + ++
Sbjct: 1 MTEQ---KQVKKPSARRRARECTVQALYSWAVSGNTAEQVE 38
>gi|163745468|ref|ZP_02152828.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
gi|161382286|gb|EDQ06695.1| rRNA methyltransferase RsmB [Oceanibulbus indolifex HEL-45]
Length = 423
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 19/151 (12%)
Query: 18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVM 77
AR +AV Y +D+I ++SE D + + +
Sbjct: 7 QARRSAV---YLLDMILDDEPRLMSELLA--------SGALDKLPPDDRARAQRLAQDTL 55
Query: 78 DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF 137
+ D L+ L + + ++LR G +EL + +++ V +
Sbjct: 56 RGLERADRLLQKHLQKAPPL-----TVRNVLRVGTVELCQ--GGAAHGVVNAMVNLVSQH 108
Query: 138 FY-GDEPKFINAVLDKVSRKEEIKRSGCVSA 167
NAVL K++ + +
Sbjct: 109 RTLSHLKGLTNAVLRKIAAQGPEAWDALRAP 139
>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
Length = 451
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ + ++ ID I + + + L++ L +++R GV E+
Sbjct: 41 KDREKARGLAHAYVFEIEKWRKKIDF-IVNSVLKGSKIEDLELYLANLIRIGVFEMKF-K 98
Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV 153
V + V + + + + KF+NA+L +V
Sbjct: 99 GVNPAIATDSVVRVVKEKYDLAKAKFVNALLREV 132
>gi|110678030|ref|YP_681037.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
gi|109454146|gb|ABG30351.1| rRNA methyltransferase RsmB [Roseobacter denitrificans OCh 114]
Length = 423
Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR +AV L QI G +E+++ D + +
Sbjct: 8 ARRSAVYLLDQILGEGRLMSELLT------------AGTLDKLEPEDRARAARLAQDTLR 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137
+ D ++ L++ + + LR G +EL C +++ V + +
Sbjct: 56 GLERADRILQKHLSKYPPL-----TVRNALRVGAVEL--CTGTAAHGVVNAMVELVSRHK 108
Query: 138 FYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
Y NAVL KV+ +
Sbjct: 109 HYSHLKGLTNAVLRKVAADGPAAWDALRAP 138
>gi|289677565|ref|ZP_06498455.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas syringae pv.
syringae FF5]
Length = 174
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 127 ISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI 159
I E V A +NAVL R E
Sbjct: 1 IGETVGCADKLKKPWAKGLLNAVLRNAQRDGEA 33
>gi|163734256|ref|ZP_02141696.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
gi|161392264|gb|EDQ16593.1| rRNA methyltransferase RsmB [Roseobacter litoralis Och 149]
Length = 423
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 20/137 (14%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR +AV L QI G +E+++ D + +
Sbjct: 8 ARRSAVYLLDQILGEGRLMSELLT------------AGTLDKLEPEDRARAARLAQDTLR 55
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI-AHDF 137
+ D ++ L++ + + LR G EL C +++ V + +
Sbjct: 56 GLERADRILQKHLSKYPPL-----TVRNALRVGAFEL--CTGTAAHGVVNAMVELVSRHK 108
Query: 138 FYGDEPKFINAVLDKVS 154
Y NAVL KV+
Sbjct: 109 HYSHLKGLTNAVLRKVA 125
>gi|241765995|ref|ZP_04763917.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
gi|241364022|gb|EER59271.1| Fmu (Sun) domain protein [Acidovorax delafieldii 2AN]
Length = 404
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 120 SVPVEVIISEYVCIAHDFFYGDE-PKFINAVLDKVSRKEEIKRSG 163
++++ V A FINA L + R+ + +
Sbjct: 49 PYEPFTLVNQAVEAAKRNVATKAQAPFINACLRRFLRERDTLVAA 93
>gi|209515830|ref|ZP_03264692.1| sun protein [Burkholderia sp. H160]
gi|209503678|gb|EEA03672.1| sun protein [Burkholderia sp. H160]
Length = 479
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R ++ LI+ + + ++ C++ E + ++
Sbjct: 74 VQDIAYRTMRRLATVEWLIAKLVKKAPPPHVTHVLECALALLVDDEASA--AYTSFTVVD 131
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V I + +NAVL R+ +
Sbjct: 132 QAVRAIGARREFAFAKGLVNAVLRNFLRERDT 163
>gi|254437147|ref|ZP_05050641.1| Methyltransferase small domain family [Octadecabacter antarcticus
307]
gi|198252593|gb|EDY76907.1| Methyltransferase small domain family [Octadecabacter antarcticus
307]
Length = 410
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 61 YLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS 120
D + + + D +++ L + S + ++LR +EL
Sbjct: 24 LSPEDRARAQRLTTETLRGLARADRMLARFLQKTPPLS-----VRNVLRLCTVELA--GG 76
Query: 121 VPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSGCVSA 167
+++ V +A + +NAVL KV+ + + +
Sbjct: 77 EAAYGVVNAGVEMVARNKRTSSMKGLVNAVLRKVAAEGPEGWAQLATP 124
>gi|319791338|ref|YP_004152978.1| sun protein [Variovorax paradoxus EPS]
gi|315593801|gb|ADU34867.1| sun protein [Variovorax paradoxus EPS]
Length = 456
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R + L ++ D +LC+ L E ++ + V A
Sbjct: 64 RWLGRAEALRRHLAKRTPPPLPDALLCTALGLAW--DPERAPYEPFTLVDQAVEAAKRNP 121
Query: 139 YGDE-PKFINAVLDKVSRKEEI 159
FINA L + R+ +
Sbjct: 122 ATRAQASFINACLRRFLRERDE 143
>gi|187922320|ref|YP_001893962.1| sun protein [Burkholderia phytofirmans PsJN]
gi|187713514|gb|ACD14738.1| sun protein [Burkholderia phytofirmans PsJN]
Length = 457
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 3/133 (2%)
Query: 28 YQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
+ +D G + + + I + M R + LI
Sbjct: 11 FALDCAGQAVGAVRLGAALPAALQSVFASAPEGNAAAARGAVQDIAYRTMRRLATAEWLI 70
Query: 88 SSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFI 146
+ + + + + A +++ + ++ + V I + +
Sbjct: 71 AKLVKKAPP--PHVGHVLACSLALLVDDEADAAYAPFTVVDQAVSAIGARREFAFAKGLV 128
Query: 147 NAVLDKVSRKEEI 159
NAVL R+ E
Sbjct: 129 NAVLRSFLREREA 141
>gi|295675129|ref|YP_003603653.1| sun protein [Burkholderia sp. CCGE1002]
gi|295434972|gb|ADG14142.1| sun protein [Burkholderia sp. CCGE1002]
Length = 479
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ + + M R + LI+ + + ++ C++ E + ++
Sbjct: 74 VQDLAYRTMRRLASAEWLIAKLVKKAPPPHVAHVLACALALLVDDETSA--AYTPFTVVD 131
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V I + +NAVL R+ +
Sbjct: 132 QAVSAIGARREFAFAKGLVNAVLRNFLRERDT 163
>gi|89067213|ref|ZP_01154726.1| ribosomal RNA small subunit methyltransferase B, putative
[Oceanicola granulosus HTCC2516]
gi|89046782|gb|EAR52836.1| ribosomal RNA small subunit methyltransferase B, putative
[Oceanicola granulosus HTCC2516]
Length = 432
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRK 156
R + + LR LE+ ++ +V + +NAVL K++
Sbjct: 79 KRPPDAVRNALRLATLEIG--EGAAAHGVVDAWVDLVGRHPHTSRYRGLVNAVLRKIAEA 136
Query: 157 EEIKRSGCVSA 167
S
Sbjct: 137 GPEAWSKLPVP 147
>gi|221201862|ref|ZP_03574899.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
gi|221207632|ref|ZP_03580640.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221172478|gb|EEE04917.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2]
gi|221178282|gb|EEE10692.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD2M]
Length = 467
Score = 39.0 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 32/187 (17%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + S ARL+A++ + + A + +
Sbjct: 1 MTRT---RSASPSSPGRAARLSALRV----------APDSLGFALDAAAQAVDAVRRGTA 47
Query: 61 YLHVDLEWFRVIIHG---------------VMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
F + G M R +D LI+ + + ++
Sbjct: 48 LPAALSAVFAQMASGAQALARGATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAG 107
Query: 106 SILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ A +L+ + P ++ + V I Y +NAVL + R+ + +
Sbjct: 108 A--LALLLDADGEAAYPPFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAM 165
Query: 165 VS-AITQ 170
+ + Q
Sbjct: 166 HADPVAQ 172
>gi|189348997|ref|YP_001944625.1| Sun protein [Burkholderia multivorans ATCC 17616]
gi|189333019|dbj|BAG42089.1| Sun protein [Burkholderia multivorans ATCC 17616]
Length = 467
Score = 38.6 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 32/187 (17%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + S ARL+A++ + + A + +
Sbjct: 1 MTRT---RSASPSSSGRAARLSALRV----------APDSLGFALDAAAQAVDAVRRGTA 47
Query: 61 YLHVDLEWFRVIIHG---------------VMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
F + G M R +D LI+ + + ++ C
Sbjct: 48 LPAALSAVFAQMASGAQALARGATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAC 107
Query: 106 SILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
++ + + P ++ + V I Y +NAVL + R+ + +
Sbjct: 108 ALALLLDADGEA--AYPPFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAM 165
Query: 165 VS-AITQ 170
+ + Q
Sbjct: 166 HADPVAQ 172
>gi|323359995|ref|YP_004226391.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum
StLB037]
gi|323276366|dbj|BAJ76511.1| tRNA and rRNA cytosine-C5-methylase [Microbacterium testaceum
StLB037]
Length = 457
Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 49/153 (32%), Gaps = 15/153 (9%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L +S E Y V + D + +G +
Sbjct: 6 ARAVAYEVL-----------RAVSGDEAYANLLLPHAIVRANLDAKDAGLATELTYGTLR 54
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ D + R+D + LR GV +L+ ++E V +A
Sbjct: 55 RRGTYDA--IIAAAADRTVDRIDPAVLDALRLGVHQLLSTRVAS-HAAVNESVELARRHG 111
Query: 139 YGDEPKFINA-VLDKVSRKEEIKRSGCVSAITQ 170
G VL +VSR + ++A +
Sbjct: 112 GGRGAAGFANAVLRRVSRDTPGEWMDRIAATAR 144
>gi|85375086|ref|YP_459148.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
HTCC2594]
gi|84788169|gb|ABC64351.1| tRNA and rRNA cytosine-C5-methylase [Erythrobacter litoralis
HTCC2594]
Length = 415
Score = 38.6 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA+Q L + G + + A D R I + +
Sbjct: 9 ARRAALQMLDAVLRRGETLEQAEGAALRQVRSA------------PDKALARAIANETLR 56
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
D LI S ++ + ++ A L P +I+ + +
Sbjct: 57 WLTDFDALIDSATKQRLPDDAKARTVLRLMLAQWL----RLETPPHAVIATGLPL----L 108
Query: 139 YGDEPKFINAVLDKVSRKEEIKRSGCVS 166
G + + V +++K E++ +
Sbjct: 109 AGGPRRLAHGVFSTLTKK-EVRLPAAPT 135
>gi|161526289|ref|YP_001581301.1| sun protein [Burkholderia multivorans ATCC 17616]
gi|160343718|gb|ABX16804.1| sun protein [Burkholderia multivorans ATCC 17616]
Length = 488
Score = 38.6 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 32/187 (17%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + S ARL+A++ + + A + +
Sbjct: 22 MTRT---RSASPSSSGRAARLSALRV----------APDSLGFALDAAAQAVDAVRRGTA 68
Query: 61 YLHVDLEWFRVIIHG---------------VMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
F + G M R +D LI+ + + ++ C
Sbjct: 69 LPAALSAVFAQMASGAQALARGATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAC 128
Query: 106 SILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
++ + + P ++ + V I Y +NAVL + R+ + +
Sbjct: 129 ALALLLDADGEA--AYPPFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAM 186
Query: 165 VS-AITQ 170
+ + Q
Sbjct: 187 HADPVAQ 193
>gi|152981119|ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
gi|151281196|gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp.
Marseille]
Length = 437
Score = 38.6 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVL--ELIECHSVPVEVI 126
+ + + M + L+++ T++ + L +LC L E +
Sbjct: 51 IQDLSYHCMRHIGRAEALLNAMTTKQTEPAILHGLLCCALALISDPDEAESEARYSAFTV 110
Query: 127 ISEYVCIAHDFFY-GDEPKFINAVLDKVSRKEEI 159
+ + V A +NAVL + R+ +
Sbjct: 111 VDQAVTAAAADPDMAHAKGMVNAVLRRFLRERDA 144
>gi|319761189|ref|YP_004125126.1| sun protein [Alicycliphilus denitrificans BC]
gi|330823049|ref|YP_004386352.1| sun protein [Alicycliphilus denitrificans K601]
gi|317115750|gb|ADU98238.1| sun protein [Alicycliphilus denitrificans BC]
gi|329308421|gb|AEB82836.1| sun protein [Alicycliphilus denitrificans K601]
Length = 455
Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 120 SVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEE 158
++++ V A FINA L + R+ E
Sbjct: 99 PYEPFTLVNQAVEAAKRSPARHGSAAFINACLRRFLRERE 138
>gi|221214672|ref|ZP_03587642.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
gi|221165562|gb|EED98038.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
multivorans CGD1]
Length = 490
Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 32/187 (17%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESV 60
MT + S ARL+A++ + + A + +
Sbjct: 24 MTRT---RSASPSSSGRAARLSALRV----------APDSLGFALDAAAQAVDAVRRGTA 70
Query: 61 YLHVDLEWFRVIIHG---------------VMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
F + G M R +D LI+ + + ++
Sbjct: 71 LPAALSAVFAQMASGAQALARGATQDVAYRTMRRLGSVDWLIARLVGKAPPAHVHAVLAG 130
Query: 106 SILRAGVLELIECHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSGC 164
+ A +L+ + P ++ + V I Y +NAVL + R+ + +
Sbjct: 131 A--LALLLDADGEAAYPPFTVVDQAVTAIGARREYAFAKGMVNAVLRRFLRERDTLVAAM 188
Query: 165 VS-AITQ 170
+ + Q
Sbjct: 189 HADPVAQ 195
>gi|302335853|ref|YP_003801060.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
gi|301319693|gb|ADK68180.1| NusB/RsmB/TIM44 [Olsenella uli DSM 7084]
Length = 484
Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AV+ L + D S D ++ GV+
Sbjct: 17 ARRVAVRLL-----------RDQRVRDGRSRELLRSSDALSALDERDRALATRLVLGVVA 65
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCI 133
+ +D I S L + LR EL+ P +S+ V +
Sbjct: 66 SRGALDAAIDSHLRPHSHLEP---KVRDALRLASFELMYLD-TPPSAAVSQGVEL 116
>gi|300705521|ref|YP_003747124.1| 16S rRNA m5c967 methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299073185|emb|CBJ44543.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CFBP2957]
Length = 443
Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 VQDLAYRTTRWLGSADWLIRTLIPRPP-----AEDTANLLRVALAQLLDTPLPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A +N VL + R++
Sbjct: 102 DQAVRAASADPKLAHAKGMVNGVLRRFLREQ 132
>gi|302381615|ref|YP_003817438.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
gi|302192243|gb|ADK99814.1| Fmu (Sun) domain protein [Brevundimonas subvibrioides ATCC 15264]
Length = 463
Score = 37.8 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 40 IISEYETYRFCADTELDVES--VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
+++ R D + + + D + R + + R ID +++
Sbjct: 53 LLNAALERRNGLDEAMSLPAVAALPGPDRAFARAVAMAALRRLGEIDHILNQ------RL 106
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK-FINAVLDKVSRK 156
+ L L P +S V +A K +NAVL V R+
Sbjct: 107 QKSPPEAVRTLLRISLAQTLVLGTPAFAAVSTAVKLAERDAKTRPYKALVNAVLRGVERE 166
>gi|307296989|ref|ZP_07576805.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
gi|306877515|gb|EFN08743.1| Fmu (Sun) domain protein [Sphingobium chlorophenolicum L-1]
Length = 429
Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 21/137 (15%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR AA++ L + G + D I +
Sbjct: 15 ARRAALRLLDAVLRRGDPLELALH-------------GAGQGLPPADRALVHAIAAETLR 61
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D LI S + D +LR +++ I + P + A
Sbjct: 62 HLPDLDALIDSATRQPLP---HDAKARMVLRIALIQTIALGTAPHA-----AIATALPLV 113
Query: 139 YGDEPKFINAVLDKVSR 155
G K ++ V ++R
Sbjct: 114 DGGPRKLVHGVFGTLTR 130
>gi|254461752|ref|ZP_05075168.1| rRNA methyltransferase RsmB [Rhodobacterales bacterium HTCC2083]
gi|206678341|gb|EDZ42828.1| rRNA methyltransferase RsmB [Rhodobacteraceae bacterium HTCC2083]
Length = 423
Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 60 VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
+ D + + + + +D ++ L + + + ++LR EL C
Sbjct: 37 RLAYDDRARAQRLASETLRSLERVDRIMKPFLRKPPPLA-----VHNVLRIATYEL--CT 89
Query: 120 SVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++++ V + + NAVL KV K + +
Sbjct: 90 GGAAHGVVNDAVSSVGANKRTEKLKGLTNAVLRKVVDKGPEEWA 133
>gi|207727563|ref|YP_002255957.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
gi|206590800|emb|CAQ56412.1| rna methyltransferase (sun protein) [Ralstonia solanacearum MolK2]
Length = 418
Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 22 VQDLAYRTTRWLGSADWLIRTLIPRPP-----AEGTANLLRVALAQLLDTPPPYAPFTVV 76
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A +N VL + R++
Sbjct: 77 DQAVRAASADPKLAHAKGMVNGVLRRFLREQ 107
>gi|83748628|ref|ZP_00945646.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|207741954|ref|YP_002258346.1| rna methyltransferase (sun protein) [Ralstonia solanacearum
IPO1609]
gi|83724672|gb|EAP71832.1| 16S rRNA m(5)C 967 methyltransferase [Ralstonia solanacearum UW551]
gi|206593340|emb|CAQ60267.1| probable rna methyltransferase (sun protein) [Ralstonia
solanacearum IPO1609]
Length = 443
Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 VQDLAYRTTRWLGSADWLIRTLIPRPP-----AEGTANLLRVALAQLLDTPPPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A +N VL + R++
Sbjct: 102 DQAVRAASADPKLAHAKGMVNGVLRRFLREQ 132
>gi|312797048|ref|YP_004029970.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
454]
gi|312168823|emb|CBW75826.1| N utilization substance protein B [Burkholderia rhizoxinica HKI
454]
Length = 112
Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 21 LAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRK 80
A Q LYQ + G + EI D + + + D + F ++HGV+ +
Sbjct: 12 ELATQGLYQWLLSGAAPGEI-----------DAAMREQPGFDKADRDHFDALLHGVIKQA 60
Query: 81 QHIDLLISSC 90
+ +
Sbjct: 61 ATLTEALMPF 70
>gi|78067943|ref|YP_370712.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
gi|77968688|gb|ABB10068.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia sp. 383]
Length = 463
Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM--ILCSILRAGVLELIECHSVPVEVII 127
+ + + M R D LI +++ + ++L E P ++
Sbjct: 72 QDVAYRTMRRLGSADWLIGRFISKAPPAHVHAVLAGAFALLLDPADEAAY----PAFTVV 127
Query: 128 SEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V I +NAVL + R+ + +
Sbjct: 128 DQAVTVIGARRECAFAKGMVNAVLRRFLRERDALVAA 164
>gi|313608940|gb|EFR84692.1| transcription antitermination factor NusB [Listeria monocytogenes
FSL F2-208]
Length = 57
Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIH 74
+R AR A+QAL+QI++ S + I +++ ++ ++
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAI----------------KNIMEDEQDDYMEKLVE 45
Query: 75 GVMDRKQHIDLL 86
GVM K ID +
Sbjct: 46 GVMANKADIDAI 57
>gi|296533616|ref|ZP_06896179.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
gi|296266054|gb|EFH12116.1| rRNA (cytosine-C(5)-)-methyltransferase [Roseomonas cervicalis ATCC
49957]
Length = 376
Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 76 VMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAH 135
V+ R +D ++ L + + + LR G EL+ P ++ V +
Sbjct: 14 VLRRLGSLDAVLEPSLRREPPPE-----VRNALRIGAAELL-LLETPPHAAVASCVDLV- 66
Query: 136 DFFYGDEPKFINAVLDKVS 154
+NAVL KV+
Sbjct: 67 ---PRPFAGLVNAVLRKVA 82
>gi|254420361|ref|ZP_05034085.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
gi|196186538|gb|EDX81514.1| NOL1/NOP2/sun family protein [Brevundimonas sp. BAL3]
Length = 445
Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 9/120 (7%)
Query: 40 IISEYETYRFCADT--ELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
+++ R D VD + R + + R ID +++ L
Sbjct: 34 LLNAALEKRNGLDEALSQPAARALEPVDRAFARAVAMAALRRLGEIDQILNRRLQ----- 88
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPK-FINAVLDKVSRK 156
+ +++R + + + P +S V +A K +NAVL V R
Sbjct: 89 KSPPEAVRTLMRIALAQTLVLE-TPAFAAVSTAVKLAERDPKTRPYKNLVNAVLRGVGRD 147
>gi|300692914|ref|YP_003753909.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
gi|299079974|emb|CBJ52651.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum PSI07]
Length = 441
Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHS-VPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 AQDLAYRATRWLGSADWLIRTLIPRPP-----AEGAANLLRVALAQLLDTPPPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A IN VL + R++
Sbjct: 102 DQAVRAASADPKLAHAKGMINGVLRRFLREQ 132
>gi|206558871|ref|YP_002229631.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
gi|198034908|emb|CAR50780.1| ribosomal RNA small subunit methyltransferase B [Burkholderia
cenocepacia J2315]
Length = 463
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM--ILCSILRAGVLELIECHSVPVEVII 127
+ + + M R D LI +++ + ++L E P ++
Sbjct: 72 QDVAYRTMRRLGSADWLIGKFVSKAPPAHVHAVLAGAFALLLDPPDEAAY----PAFTVV 127
Query: 128 SEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V I + +NAVL + R+ + +
Sbjct: 128 DQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAA 164
>gi|170734472|ref|YP_001766419.1| sun protein [Burkholderia cenocepacia MC0-3]
gi|169817714|gb|ACA92297.1| sun protein [Burkholderia cenocepacia MC0-3]
Length = 463
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM--ILCSILRAGVLELIECHSVPVEVII 127
+ + + M R D LI +++ + ++L E P ++
Sbjct: 72 QDVAYRTMRRLGSADWLIGKFVSKAPPAHVHAVLAGAFALLLDPPDEAAY----PAFTVV 127
Query: 128 SEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V I + +NAVL + R+ + +
Sbjct: 128 DQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAA 164
>gi|254246867|ref|ZP_04940188.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
gi|124871643|gb|EAY63359.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia cenocepacia
PC184]
Length = 463
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM--ILCSILRAGVLELIECHSVPVEVII 127
+ + + M R D LI +++ + ++L E P ++
Sbjct: 72 QDVAYRTMRRLGSADWLIGKFVSKAPPAHVHAVLAGAFALLLDPPDEAAY----PAFTVV 127
Query: 128 SEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V I + +NAVL + R+ + +
Sbjct: 128 DQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAA 164
>gi|107024054|ref|YP_622381.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116691141|ref|YP_836764.1| sun protein [Burkholderia cenocepacia HI2424]
gi|105894243|gb|ABF77408.1| sun protein [Burkholderia cenocepacia AU 1054]
gi|116649230|gb|ABK09871.1| sun protein [Burkholderia cenocepacia HI2424]
Length = 463
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDM--ILCSILRAGVLELIECHSVPVEVII 127
+ + + M R D LI +++ + ++L E P ++
Sbjct: 72 QDVAYRTMRRLGSADWLIGKFVSKAPPAHVHAVLAGAFALLLDPPDEAAY----PAFTVV 127
Query: 128 SEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
+ V I + +NAVL + R+ + +
Sbjct: 128 DQAVTVIGARREFAFAKGMVNAVLRRFLRERDALVAA 164
>gi|12044877|ref|NP_072687.1| transcription termination/antitermination protein NusB [Mycoplasma
genitalium G37]
gi|1351464|sp|P47273|Y027_MYCGE RecName: Full=Uncharacterized protein MG027
gi|37928041|pdb|1Q8C|A Chain A, A Conserved Hypothetical Protein From Mycoplasma
Genitalium Shows Structural Homology To Nusb Proteins
gi|3844637|gb|AAC71243.1| transcription termination/antitermination protein NusB [Mycoplasma
genitalium G37]
gi|166079016|gb|ABY79634.1| transcription termination/antitermination protein NusB [synthetic
Mycoplasma genitalium JCVI-1.0]
Length = 151
Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
K L R R+A V+ ++ + I +++ Y DT+ + + + +
Sbjct: 6 KGLTNKLTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEY----DTKERQLNEWQKLIV 61
Query: 67 EWFRVIIHGVM---DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ F I + +Q + L K S ++D++ +++ + E ++
Sbjct: 62 KAFSENIFSFQKKIEEQQLKNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKAHNTDKP 121
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ISE + I + G E K +A+LDK+
Sbjct: 122 -LLISEALLIMDHYSQGAEKKQTHALLDKLL 151
>gi|89902354|ref|YP_524825.1| sun protein [Rhodoferax ferrireducens T118]
gi|89347091|gb|ABD71294.1| sun protein [Rhodoferax ferrireducens T118]
Length = 454
Score = 37.0 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 126 IISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
++++ V A + +FINA L + R+ +
Sbjct: 112 LVNQTVEAAKRSPATQPQARFINACLRRFLRERDT 146
>gi|255660379|ref|ZP_05405788.1| transcription termination/antitermination protein NusB [Mycoplasma
genitalium G37]
Length = 147
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDII-GCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
K L R R+A V+ ++ + I +++ Y DT+ + + + +
Sbjct: 2 KGLTNKLTRTQRRIAVVEFIFSLLFFLPKEAEVIQADFLEY----DTKERQLNEWQKLIV 57
Query: 67 EWFRVIIHGVM---DRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPV 123
+ F I + +Q + L K S ++D++ +++ + E ++
Sbjct: 58 KAFSENIFSFQKKIEEQQLKNQLEIQTKYNKISGKKIDLLTTAVVLCALSEQKAHNTDKP 117
Query: 124 EVIISEYVCIAHDFFYGDEPKFINAVLDKVS 154
++ISE + I + G E K +A+LDK+
Sbjct: 118 -LLISEALLIMDHYSQGAEKKQTHALLDKLL 147
>gi|312212170|emb|CBX92254.1| hypothetical protein [Leptosphaeria maculans]
Length = 1020
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 4/94 (4%)
Query: 8 KDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISE----YETYRFCADTELDVESVYLH 63
LK R AR A+ AL D G + E+I+ + R + L
Sbjct: 678 PRLKYVKLRHTARELAIIALSAADDSGLTAVEVINWIAKAFPLLRKGRASWETRVETKLS 737
Query: 64 VDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF 97
E FR I G D + + +S +
Sbjct: 738 ALPELFRSEISGTRDNTKRYSFVDASMRKRYRAL 771
>gi|94992630|ref|YP_600729.1| relaxase [Streptococcus pyogenes MGAS2096]
gi|94546138|gb|ABF36185.1| Relaxase [Streptococcus pyogenes MGAS2096]
Length = 491
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 5 DNKKDLKLSHRRG--IARLAAVQ------------ALYQIDIIGCSTTEIISEYETYRFC 50
DNKK+L+L +R ++R A+ ALYQ + G T + ++ R
Sbjct: 173 DNKKNLRLLRKRSDELSREYALSVIEQPSGRKKPYALYQAEKQGLPTRDTVA-----RQA 227
Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
D + D E ++ D + +I +
Sbjct: 228 VDEAISKSFTLKDFDRELLKMGYRINFDPNRKYWTIIGKGWQRPKRLYK 276
>gi|187476742|ref|YP_784766.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
gi|115421328|emb|CAJ47833.1| ribosomal RNA small subunit methyltransferase [Bordetella avium
197N]
Length = 442
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 118 CHSVPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRS 162
++ + V A IN L + R+ E +
Sbjct: 102 MPVYAPHTVVDQAVTAAAEHRRLAGFKGLINGSLRRFLREREQFEA 147
>gi|167568296|ref|ZP_02361170.1| sun protein [Burkholderia oklahomensis C6786]
Length = 470
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + + R+ D LI+ + + +++C+ A +++ E + ++
Sbjct: 74 IQDIAYRAVRRRGTADWLIAQFVAKAPHAHVHALLVCA--FALLVDDDEHAAYAPFTVVD 131
Query: 129 EYVCIAHDFFY-GDEPKFINAVLDKVSRKE 157
+ V +NAVL + R+
Sbjct: 132 QAVTAVGARRECSFAKGLVNAVLRRFLRER 161
>gi|167561034|ref|ZP_02353950.1| sun protein [Burkholderia oklahomensis EO147]
Length = 470
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + + R+ D LI+ + + +++C+ A +++ E + ++
Sbjct: 74 IQDIAYRAVRRRGTADWLIAQFVAKAPHAHVHALLVCA--FALLVDDDEHAAYAPFTVVD 131
Query: 129 EYVCIAHDFFY-GDEPKFINAVLDKVSRKE 157
+ V +NAVL + R+
Sbjct: 132 QAVTAVGARRECSFAKGLVNAVLRRFLRER 161
>gi|312797598|ref|YP_004030520.1| 16S rRNA m(5)C 967 methyltransferase [Burkholderia rhizoxinica HKI
454]
gi|312169373|emb|CBW76376.1| 16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) [Burkholderia
rhizoxinica HKI 454]
Length = 460
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 100 LDMILCSILRAGVL---ELIECHSVPVEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSR 155
+ ++LR E + P ++++ V IA +NAVL + R
Sbjct: 88 PAEHVANVLRCAFALLAEPDATRAYPDFTVVNQAVDAIAARADVAHTKGLVNAVLRNMVR 147
Query: 156 KE 157
Sbjct: 148 SR 149
>gi|294660497|ref|NP_853291.2| putative transcription termination factor N utilization substance
protein B [Mycoplasma gallisepticum str. R(low)]
gi|284812158|gb|AAP56859.2| putative transcription termination factor N utilization substance
protein B (NusB) [Mycoplasma gallisepticum str. R(low)]
gi|284930777|gb|ADC30716.1| putative transcription termination factor N utilization substance
protein B (NusB) [Mycoplasma gallisepticum str. R(high)]
gi|284931318|gb|ADC31256.1| putative transcription termination factor N utilization substance
protein B (NusB) [Mycoplasma gallisepticum str. F]
Length = 130
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 29 QIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLIS 88
Q I T I + + + D E+ + + ++S
Sbjct: 10 QYQIRYDRLTFIYQALLLDLNLDEIYQAISQLEDLKDQEFLTNWTGLINQ----VPTIVS 65
Query: 89 SCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINA 148
+ L E WS++RLD ++ ++ + E + ++IS+ + ++ + K ++A
Sbjct: 66 AHLKESWSWNRLDYMIKALFNLVITEAKVLKTEK-AILISQATKLIQEYGDLNSIKLVSA 124
Query: 149 VLDKVS 154
+L+KV
Sbjct: 125 ILNKVI 130
>gi|103486536|ref|YP_616097.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
gi|98976613|gb|ABF52764.1| Fmu (Sun) [Sphingopyxis alaskensis RB2256]
Length = 437
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 21/138 (15%)
Query: 20 RLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDR 79
R AA++ L I G + + D + I +
Sbjct: 28 RRAALRLLDAIVRRGDPLDVAMH-------------AAAQGLVGADRAFAVAIASEALRW 74
Query: 80 KQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFY 139
ID L+ + D+ ++LR + +L+ S V V A
Sbjct: 75 MTDIDALVDGATAQPLP---DDVKSRAVLRIALAQLLVLKSPGHAV-----VATALPLVD 126
Query: 140 GDEPKFINAVLDKVSRKE 157
G + ++A+L + +++
Sbjct: 127 GGPRRLVHAILSRAQKEK 144
>gi|85057607|ref|YP_456523.1| N utilization substance protein B [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789712|gb|ABC65444.1| N utilization substance protein B [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 138
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 28/158 (17%)
Query: 7 KKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDL 66
K+ R + R+ ++ LYQ D + + +
Sbjct: 2 KRPPNKKESR-LLRIELMKLLYQYDFYQNNL------------------TLSQTNTNPIF 42
Query: 67 EWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVI 126
+F+ II K I + + +RL+ + +I+R EL+E + I
Sbjct: 43 TFFQKIIT-----KLKFIDEIITKSLYDYKINRLNKVDRAIIRLATYELLETNISHAI-I 96
Query: 127 ISEYVCIAHDFF---YGDEPKFINAVLDKVSRKEEIKR 161
I E + I F + KF N +LD++ R+ ++ +
Sbjct: 97 IDEAIEITKQFCNLNDEKQHKFNNKLLDQIYRQLQMYK 134
>gi|153815476|ref|ZP_01968144.1| hypothetical protein RUMTOR_01711 [Ruminococcus torques ATCC 27756]
gi|331088972|ref|ZP_08337879.1| hypothetical protein HMPREF1025_01462 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847118|gb|EDK24036.1| hypothetical protein RUMTOR_01711 [Ruminococcus torques ATCC 27756]
gi|330406424|gb|EGG85937.1| hypothetical protein HMPREF1025_01462 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 470
Score = 36.7 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 19/109 (17%)
Query: 5 DNKKDLKLSHRRG--IARLAAVQ------------ALYQIDIIGCSTTEIISEYETYRFC 50
DNKK+L+L +R ++R A+ ALYQ + G T + ++ R
Sbjct: 152 DNKKNLRLLRKRSDELSREYALSVIEQPSGRKKPYALYQAEKQGLPTRDTVA-----RQA 206
Query: 51 ADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSR 99
D + D E ++ D + +I +
Sbjct: 207 VDEAISKSFTLKDFDRELLKMGYRINFDPNRKYWTIIGKGWQRPKRLYK 255
>gi|310816801|ref|YP_003964765.1| ribosomal RNA small subunit methyltransferase B, putative
[Ketogulonicigenium vulgare Y25]
gi|308755536|gb|ADO43465.1| ribosomal RNA small subunit methyltransferase B, putative
[Ketogulonicigenium vulgare Y25]
Length = 417
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 46 TYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILC 105
+R ++ + D + + V+ D + L R + +
Sbjct: 21 DHRLLSECTAIFDP-LSPPDRARAQRLATSVLRAASRADRWLKPHLK-----KRPPVQVQ 74
Query: 106 SILRAGVLELIECHSVPVEVIISEYVCI-AHDFFYGDEPKFINAVLDK 152
+ LR GV+E+ ++++ V + A + NAVL K
Sbjct: 75 NALRLGVVEIA--EGAAPHGVVNDIVTLLADGKRTANFAALANAVLRK 120
>gi|297797679|ref|XP_002866724.1| hypothetical protein ARALYDRAFT_496904 [Arabidopsis lyrata subsp.
lyrata]
gi|297312559|gb|EFH42983.1| hypothetical protein ARALYDRAFT_496904 [Arabidopsis lyrata subsp.
lyrata]
Length = 871
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 49/159 (30%), Gaps = 19/159 (11%)
Query: 1 MTIQDNKKDLKLSHRRGIARL-----------AAVQALYQIDIIGCSTTEIISEYETYRF 49
M +D +D L R +ARL A Q ++ + E + + T
Sbjct: 63 MEEEDESQDQSLGRSRSLARLNAQREFLRATSLAAQRAFESEETLPELEEALDMFLTMYP 122
Query: 50 CADTELDVESVYLHVD--LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSI 107
+ V+ + L +V + + T +S S + L +
Sbjct: 123 KYQSSEKVDELRNDEYFHLSLPKVCLDYCGFGLFSYLQTVHYWDTCTFSLSEISANLSNH 182
Query: 108 LRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFI 146
G E +++ I +Y+ I +E +
Sbjct: 183 AIYGGAEKGSIEH-DIKIRIMDYLNI-----PENEYGLV 215
>gi|171319444|ref|ZP_02908549.1| sun protein [Burkholderia ambifaria MEX-5]
gi|171095336|gb|EDT40317.1| sun protein [Burkholderia ambifaria MEX-5]
Length = 462
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + M R +D LI +++ + + A +L+ E + P I+ +
Sbjct: 72 QDVAYRTMRRLGSVDWLIGRLVSKAPP--AHVQAVLAGALALLLDPEETAAYPAFTIVDQ 129
Query: 130 YVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I + +NAVL + R+ ++ +
Sbjct: 130 AVTVIGARREFAFAKGLVNAVLRRFQRERDVLVAA 164
>gi|311109240|ref|YP_003982093.1| methyltransferase [Achromobacter xylosoxidans A8]
gi|310763929|gb|ADP19378.1| ribosomal RNA small subunit methyltransferase B [Achromobacter
xylosoxidans A8]
Length = 445
Score = 36.3 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 118 CHSVPVEVIISEYVCIA-HDFFYGDEPKFINAVLDKVSRKEEIKRSGCV-SAITQ 170
++ + V A +NA L + R+ + S Q
Sbjct: 103 MPVYAPHTVVDQAVTAASRSRELASFKGMLNACLRRFLRERAALEAAVADSPEAQ 157
>gi|261885488|ref|ZP_06009527.1| transcription antitermination protein NusB [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 92
Score = 35.9 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 13/105 (12%)
Query: 13 SHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVI 72
R R + V LY + G E +E+ E+ + + +
Sbjct: 1 MATRHQVRQSVVSLLYANQM-GSEMEEFSNEFLE-----------ETKIRNDQKSFTLTL 48
Query: 73 IHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
+GV+D ID + + L KW + + +ILR G +LI
Sbjct: 49 YNGVLDNLNLIDEALDAHL-GKWKLVEIGAVERAILRLGAYKLIY 92
>gi|3123892|gb|AAC38450.1| response regulator [Vibrio cholerae]
Length = 553
Score = 35.9 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYNDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|115353229|ref|YP_775068.1| sun protein [Burkholderia ambifaria AMMD]
gi|115283217|gb|ABI88734.1| sun protein [Burkholderia ambifaria AMMD]
Length = 462
Score = 35.9 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + M R D LI +++ + + A +L+ E + P I+ +
Sbjct: 72 QDVAYRTMRRLGSADWLIGRLVSKAPP--AHVQAVLAAALALLLDPEETAAYPAFTIVDQ 129
Query: 130 YVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I + +NAVL + R+ + +
Sbjct: 130 AVTVIGARREFAFAKGLVNAVLRRFQRERDALVAA 164
>gi|299068350|emb|CBJ39574.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Ralstonia
solanacearum CMR15]
Length = 441
Score = 35.9 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 VQDLAYRATRWLGSADWLIRTLIPRPP-----AEGAANLLRVALAQLLDTPAPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A IN VL + R++
Sbjct: 102 DQTVRAASADPKLAHAKGMINGVLRRFLREQ 132
>gi|17544794|ref|NP_518196.1| RNA methyltransferase (SUN protein) [Ralstonia solanacearum
GMI1000]
gi|17427083|emb|CAD13603.1| putative rna methyltransferase (sun protein) [Ralstonia
solanacearum GMI1000]
Length = 441
Score = 35.9 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 VQDLAYRATRWLGSADWLIRTLIPRPP-----AEGAANLLRVALAQLLDTPQPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
+ V A IN VL + R++
Sbjct: 102 DQTVRAASADPKLAHAKGMINGVLRRFLREQ 132
>gi|254285406|ref|ZP_04960371.1| response regulator VieB [Vibrio cholerae AM-19226]
gi|150424678|gb|EDN16614.1| response regulator VieB [Vibrio cholerae AM-19226]
Length = 553
Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYNDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|82701526|ref|YP_411092.1| sun protein [Nitrosospira multiformis ATCC 25196]
gi|82409591|gb|ABB73700.1| sun protein [Nitrosospira multiformis ATCC 25196]
Length = 442
Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 19/117 (16%)
Query: 55 LDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLE 114
S + + +GV+ +D+L+ L + D L +L G+ +
Sbjct: 29 WRSHSGLSDQQRGAIQDLSYGVLRFYGQLDILLGLLLNKPLK----DQSLRYLLLVGLYQ 84
Query: 115 LIECHSVPVEVIISEYVCIA--------------HDFFYGDEPKFINAVLDKVSRKE 157
L + P V++ V + +NA+L RK
Sbjct: 85 LQYSKTAP-HVVVDSAVSASCSPSIDGRNSRNMLDPRHAKSIGGLVNAILRNFLRKR 140
>gi|15641656|ref|NP_231288.1| response regulator VieB [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121590835|ref|ZP_01678161.1| response regulator VieB [Vibrio cholerae 2740-80]
gi|121727316|ref|ZP_01680463.1| response regulator VieB [Vibrio cholerae V52]
gi|147675675|ref|YP_001217201.1| response regulator VieB [Vibrio cholerae O395]
gi|153819789|ref|ZP_01972456.1| response regulator VieB [Vibrio cholerae NCTC 8457]
gi|153823160|ref|ZP_01975827.1| response regulator VieB [Vibrio cholerae B33]
gi|227081803|ref|YP_002810354.1| response regulator VieB [Vibrio cholerae M66-2]
gi|229508238|ref|ZP_04397743.1| response regulator VieB [Vibrio cholerae BX 330286]
gi|229511523|ref|ZP_04401002.1| response regulator VieB [Vibrio cholerae B33]
gi|229518662|ref|ZP_04408105.1| response regulator VieB [Vibrio cholerae RC9]
gi|229607812|ref|YP_002878460.1| response regulator VieB [Vibrio cholerae MJ-1236]
gi|254848770|ref|ZP_05238120.1| response regulator VieB [Vibrio cholerae MO10]
gi|255744921|ref|ZP_05418871.1| response regulator VieB [Vibrio cholera CIRS 101]
gi|262161794|ref|ZP_06030812.1| response regulator VieB [Vibrio cholerae INDRE 91/1]
gi|262169663|ref|ZP_06037354.1| response regulator VieB [Vibrio cholerae RC27]
gi|298498267|ref|ZP_07008074.1| response regulator VieB [Vibrio cholerae MAK 757]
gi|9656165|gb|AAF94802.1| response regulator VieB [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547325|gb|EAX57443.1| response regulator VieB [Vibrio cholerae 2740-80]
gi|121630322|gb|EAX62719.1| response regulator VieB [Vibrio cholerae V52]
gi|126509668|gb|EAZ72262.1| response regulator VieB [Vibrio cholerae NCTC 8457]
gi|126519321|gb|EAZ76544.1| response regulator VieB [Vibrio cholerae B33]
gi|146317558|gb|ABQ22097.1| response regulator VieB [Vibrio cholerae O395]
gi|227009691|gb|ACP05903.1| response regulator VieB [Vibrio cholerae M66-2]
gi|227013558|gb|ACP09768.1| response regulator VieB [Vibrio cholerae O395]
gi|229343351|gb|EEO08326.1| response regulator VieB [Vibrio cholerae RC9]
gi|229351488|gb|EEO16429.1| response regulator VieB [Vibrio cholerae B33]
gi|229355743|gb|EEO20664.1| response regulator VieB [Vibrio cholerae BX 330286]
gi|229370467|gb|ACQ60890.1| response regulator VieB [Vibrio cholerae MJ-1236]
gi|254844475|gb|EET22889.1| response regulator VieB [Vibrio cholerae MO10]
gi|255737392|gb|EET92787.1| response regulator VieB [Vibrio cholera CIRS 101]
gi|262021897|gb|EEY40607.1| response regulator VieB [Vibrio cholerae RC27]
gi|262028526|gb|EEY47181.1| response regulator VieB [Vibrio cholerae INDRE 91/1]
gi|297542600|gb|EFH78650.1| response regulator VieB [Vibrio cholerae MAK 757]
Length = 553
Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYNDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|218671732|ref|ZP_03521401.1| RNA methyltransferase - sun protein [Rhizobium etli GR56]
Length = 342
Score = 35.9 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 139 YGDEPKFINAVLDKVSRKEE--IKRSGCVSA 167
K +NAVL ++ R+++ + G V+
Sbjct: 21 NRRFAKLVNAVLRRLGREKDEVLAEIGKVAP 51
>gi|119900274|ref|YP_935487.1| Sun protein [Azoarcus sp. BH72]
gi|119672687|emb|CAL96601.1| Sun protein [Azoarcus sp. BH72]
Length = 426
Score = 35.9 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKE 157
S + ++L + L + V + + V A +N VL R+
Sbjct: 73 SPPPAYIHALLLVALHRLEQRPEQAHTV-VDQAVS-AAAAAMPGLKGMVNGVLRNSLRQH 130
Query: 158 EI 159
E
Sbjct: 131 EE 132
>gi|241664927|ref|YP_002983287.1| sun protein [Ralstonia pickettii 12D]
gi|240866954|gb|ACS64615.1| sun protein [Ralstonia pickettii 12D]
Length = 443
Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 10/106 (9%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH-SVPVEVII 127
+ + + D LI + + ++LR + +L++ ++
Sbjct: 47 VQDLAYRATRWLGSTDWLIRTLIPRPP-----AEGAANLLRVALAQLLDDPLPYAPFTVV 101
Query: 128 SEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEIKRS---GCVSAIT 169
+ V A IN VL + R+++ + SA T
Sbjct: 102 DQTVTAASADPKLSHGKGMINGVLRRFLREQQALVADMQADPSAAT 147
>gi|186474810|ref|YP_001856280.1| sun protein [Burkholderia phymatum STM815]
gi|184191269|gb|ACC69234.1| sun protein [Burkholderia phymatum STM815]
Length = 453
Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIIS 128
+ I + M R + L++ + + + + A +++ + ++
Sbjct: 52 VQDIAYRTMRRLGTAEWLVAKLVRKAPP--PHVAHVLACALALLVDEASNAAYTPFTVVD 109
Query: 129 EYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
+ V I NAVL R+ E
Sbjct: 110 QAVNAIGARRESSFAKGLTNAVLRNFLRERET 141
>gi|153826148|ref|ZP_01978815.1| response regulator VieB [Vibrio cholerae MZO-2]
gi|149740089|gb|EDM54254.1| response regulator VieB [Vibrio cholerae MZO-2]
Length = 435
Score = 35.9 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|153216845|ref|ZP_01950621.1| response regulator VieB [Vibrio cholerae 1587]
gi|124114102|gb|EAY32922.1| response regulator VieB [Vibrio cholerae 1587]
Length = 383
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|229523743|ref|ZP_04413148.1| response regulator VieB [Vibrio cholerae bv. albensis VL426]
gi|229337324|gb|EEO02341.1| response regulator VieB [Vibrio cholerae bv. albensis VL426]
Length = 555
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ ++ G + + + + + +
Sbjct: 123 MTLQERLTNA-------ISRKHALKALYQAELDGDAELGVKLCDELEPFYSEYYFVIQKF 175
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 176 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 207
>gi|262404068|ref|ZP_06080623.1| response regulator VieB [Vibrio sp. RC586]
gi|262349100|gb|EEY98238.1| response regulator VieB [Vibrio sp. RC586]
Length = 553
Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 19 ARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTELDVESVYLHVDLEWFRVII 73
+R A++ALYQ + G S + + + + + + + + R +
Sbjct: 132 SRKHALKALYQAERDGDAELGLSLCDELEPFHADYYFVIQKFRGDFLTKLRRFDHAREVY 191
Query: 74 HGVMDRKQHIDLLI 87
++ K I
Sbjct: 192 LETLEHKDFDWAKI 205
>gi|194291224|ref|YP_002007131.1| 16S rRNA m5c967 methyltransferase,
s-adenosyl-l-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
gi|193225059|emb|CAQ71070.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Cupriavidus
taiwanensis LMG 19424]
Length = 477
Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 118 CHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
++ + V A +NAVL + R+ +
Sbjct: 119 RPGYSTFTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKA 161
>gi|113869632|ref|YP_728121.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
gi|113528408|emb|CAJ94753.1| tRNA and rRNA cytosine-C5-methylase [Ralstonia eutropha H16]
Length = 466
Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 118 CHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
++ + V A +NAVL + R+ +
Sbjct: 112 RPGYSTFTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKA 154
>gi|167585080|ref|ZP_02377468.1| Fmu, rRNA SAM-dependent methyltransferase [Burkholderia ubonensis
Bu]
Length = 465
Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + M R D LI +++ + + A +L+ + + P ++ +
Sbjct: 72 QDVAYRTMRRLGSADWLIGRLVSKAPP--AHVQAVLACALALLLDEGDAAAYPAFTVVDQ 129
Query: 130 YV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I +NAVL + R+ + + +
Sbjct: 130 AVTAIGARREVAFAKGMVNAVLRRFLRERDAQVAA 164
>gi|325518100|gb|EGC97891.1| 16S rRNA methyltransferase B [Burkholderia sp. TJI49]
Length = 362
Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 121 VPVEVIISEYV-CIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
P ++ + V I +NAVL + R+ + +
Sbjct: 16 YPPFTVVDQAVTAIGARRECAFAKGMVNAVLRRFLRERDALVAA 59
>gi|329910997|ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
gi|327546013|gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae
bacterium IMCC9480]
Length = 437
Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 100 LDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKE 157
++ C++ E + ++++ V A +NAVL + R+
Sbjct: 84 HGLLCCALTLIDRDESDLPAPYEIFTVVNQAVEAASADPAMAHAKGMVNAVLRRFLRER 142
>gi|229515045|ref|ZP_04404505.1| response regulator VieB [Vibrio cholerae TMA 21]
gi|229347750|gb|EEO12709.1| response regulator VieB [Vibrio cholerae TMA 21]
Length = 553
Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|153801573|ref|ZP_01956159.1| response regulator VieB [Vibrio cholerae MZO-3]
gi|124122900|gb|EAY41643.1| response regulator VieB [Vibrio cholerae MZO-3]
Length = 553
Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|262190506|ref|ZP_06048752.1| response regulator VieB [Vibrio cholerae CT 5369-93]
gi|262033618|gb|EEY52110.1| response regulator VieB [Vibrio cholerae CT 5369-93]
Length = 553
Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|153828843|ref|ZP_01981510.1| response regulator VieB [Vibrio cholerae 623-39]
gi|148875639|gb|EDL73774.1| response regulator VieB [Vibrio cholerae 623-39]
Length = 553
Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|121606520|ref|YP_983849.1| sun protein [Polaromonas naphthalenivorans CJ2]
gi|120595489|gb|ABM38928.1| sun protein [Polaromonas naphthalenivorans CJ2]
Length = 450
Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 120 SVPVEVIISEYVCIAHDFFYG-DEPKFINAVLDKVSRKEEIKRSGCVSAITQ 170
++ + V A + FIN L + R++ G + A+T+
Sbjct: 98 PYTAHTLVDQAVEAAKRSDATLHQASFINGCLRRFLREQ-----GELMALTE 144
>gi|172062101|ref|YP_001809753.1| sun protein [Burkholderia ambifaria MC40-6]
gi|171994618|gb|ACB65537.1| sun protein [Burkholderia ambifaria MC40-6]
Length = 462
Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + M R D LI + + + + A +L+ E + P I+ +
Sbjct: 72 QDVAYRTMRRLGSADWLIGRLVGKAPP--AHVQAVLAAALALLLDPEETAAYPAFTIVDQ 129
Query: 130 YVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I + +NAVL + R+ + +
Sbjct: 130 AVTVIGARREFAFAKGLVNAVLRRFQRERDALVAA 164
>gi|170697712|ref|ZP_02888799.1| sun protein [Burkholderia ambifaria IOP40-10]
gi|170137327|gb|EDT05568.1| sun protein [Burkholderia ambifaria IOP40-10]
Length = 462
Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 70 RVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISE 129
+ + + M R D LI + + + + A +L+ E + P I+ +
Sbjct: 72 QDVAYRTMRRLGSADWLIGRLVGKAPP--AHVQAVLAGALALLLDPEETAAYPAFTIVDQ 129
Query: 130 YVC-IAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
V I + +NAVL + R+ + +
Sbjct: 130 AVTVIGARREFAFAKGLVNAVLRRFQRERDALVAA 164
>gi|229529317|ref|ZP_04418707.1| response regulator VieB [Vibrio cholerae 12129(1)]
gi|254226750|ref|ZP_04920325.1| response regulator VieB [Vibrio cholerae V51]
gi|125620727|gb|EAZ49086.1| response regulator VieB [Vibrio cholerae V51]
gi|229333091|gb|EEN98577.1| response regulator VieB [Vibrio cholerae 12129(1)]
Length = 553
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYSDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 205
>gi|94312493|ref|YP_585703.1| sun protein [Cupriavidus metallidurans CH34]
gi|93356345|gb|ABF10434.1| tRNA and rRNA cytosine-C5-methylase (sun protein) [Cupriavidus
metallidurans CH34]
Length = 457
Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 118 CHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
++ + V A +NAVL + R+ +
Sbjct: 107 RGGYSDFTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKA 149
>gi|237654726|ref|YP_002891040.1| sun protein [Thauera sp. MZ1T]
gi|237625973|gb|ACR02663.1| sun protein [Thauera sp. MZ1T]
Length = 435
Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 97 FSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
+ L L+ + ++ + V A +N VL R+
Sbjct: 80 LHSPPPVEIRALLLVALQRLTQRPEQAHTVVDQAVG-ATAVAMPGLRNLVNGVLRNALRR 138
Query: 157 EEIKRSGCVSAITQ 170
+ + G + A +
Sbjct: 139 -QPEWQGWIEAEPE 151
>gi|297579230|ref|ZP_06941158.1| response regulator VieB [Vibrio cholerae RC385]
gi|297536824|gb|EFH75657.1| response regulator VieB [Vibrio cholerae RC385]
Length = 394
Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGCS-----TTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ ++ G + + + + + + +
Sbjct: 123 MTLQERLTNA-------ISRKHALKALYQAELDGDAELGVRLCDELEPFYSDYYFVIQKF 175
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 176 RGEFLTQLRRFDHAREVYLETLEHKDFDWAKI 207
>gi|328789776|ref|XP_623405.3| PREDICTED: hypothetical protein LOC551007 [Apis mellifera]
Length = 422
Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 4/112 (3%)
Query: 6 NKKDLKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVD 65
NK+ L+ ++R AR+ ++A ++ + S E Y L E+ D
Sbjct: 295 NKEALERENKRLQARILNLEAEFEHEKSQKSVQE----QRKYDEKITESLKKETQQARKD 350
Query: 66 LEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIE 117
E F V + + + + + + + L+ ++ +
Sbjct: 351 AEKFEREYINVSEERDKLKNELEEMKRMYAALEKRMKAGMNRLKYAAIQQLF 402
>gi|73543087|ref|YP_297607.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
JMP134]
gi|72120500|gb|AAZ62763.1| Fmu, rRNA SAM-dependent methyltransferase [Ralstonia eutropha
JMP134]
Length = 457
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 118 CHSVPVEVIISEYVCIAHDF-FYGDEPKFINAVLDKVSRKEEI 159
++ + V A +NAVL + R+ +
Sbjct: 107 RGGYNAFTVVDQAVSAAASEPKTAHARGLVNAVLRRFLRERKA 149
>gi|124265465|ref|YP_001019469.1| Sun protein [Methylibium petroleiphilum PM1]
gi|124258240|gb|ABM93234.1| Sun protein [Methylibium petroleiphilum PM1]
Length = 449
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 114 ELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK 156
E + ++S+ V A + F+NAVL + R+
Sbjct: 92 ESADTPPYAPHTLVSQAVEAA-KQRARAQAGFVNAVLRRHLRE 133
>gi|327484259|gb|AEA78666.1| Response regulator VieB [Vibrio cholerae LMA3894-4]
Length = 553
Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 1 MTIQDNKKDLKLSHRRGIARLAAVQALYQIDIIGC-----STTEIISEYETYRFCADTEL 55
MT+Q+ + I+R A++ALYQ + G S + + + + +
Sbjct: 121 MTLQERLTNA-------ISRKHALKALYQAERDGDAELGLSLCDELEPFYNDYYFVIQKF 173
Query: 56 DVESVYLHVDLEWFRVIIHGVMDRKQHIDLLI 87
E + + R + ++ K I
Sbjct: 174 RGEFLTQLRRFDHARAVYLETLEHKDFDWAKI 205
>gi|257091709|ref|YP_003165350.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044233|gb|ACV33421.1| sun protein [Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 442
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 126 IISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKRSG 163
++ + V A + G +N +L R+ E +
Sbjct: 120 VVDQAVAAAGEMTGGVFKGLVNGLLRSYLRQRESLAAA 157
>gi|145588538|ref|YP_001155135.1| acyltransferase 3 [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145046944|gb|ABP33571.1| acyltransferase 3 [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 362
Score = 34.4 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 35/139 (25%), Gaps = 22/139 (15%)
Query: 16 RGIARLAAV----QALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRV 71
R + + AV LY + G I Y +L Y + F
Sbjct: 173 RSVIWMLAVLCVTSLLY-FNRHGDYENYFIYFMGAYGLGVLAQLC--KNYPDPMINRFAR 229
Query: 72 IIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYV 131
+ I + I ++ + +IL +
Sbjct: 230 VF------IALIGIAIVVSSFHQFWLRNILAYGVAILLIFWGDWAYKDQYKDH------- 276
Query: 132 CIAHDFFYGDEPKFINAVL 150
++ K +NA+L
Sbjct: 277 --SNKLKNPRTHKLVNAIL 293
>gi|72387616|ref|XP_844232.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62360524|gb|AAX80937.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800765|gb|AAZ10673.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 381
Score = 34.4 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLT-------EKWSFSRLDMILCSILRAGVLELIECHSV 121
I V+ R+ +IS S L L +L L
Sbjct: 216 LVQAITTVVQRRAWYHHIISRHHRWFKEDCGGVKDLSLLGRPLDRVLCLENNPLSVHRQP 275
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI--KRSGCVS 166
+++ +YV A+ D +F+ VL +++ + +R G V+
Sbjct: 276 RHSILVEDYVQPAN---SDDTLRFVAGVLRRIASRLRSAGERGGDVA 319
>gi|255026239|ref|ZP_05298225.1| transcription antitermination protein NusB [Listeria
monocytogenes FSL J2-003]
Length = 36
Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 15 RRGIARLAAVQALYQIDIIGCSTTEIISEYET 46
+R AR A+QAL+QI++ S + I
Sbjct: 2 KRREAREKALQALFQIELNEMSLDQAIKNIME 33
>gi|32491213|ref|NP_871467.1| hypothetical protein WGLp464 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166420|dbj|BAC24610.1| nusB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 41
Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 16 RGIARLAAVQALYQIDIIGCSTTEIISEYE 45
R AR A+QALY I EI
Sbjct: 6 RSYARQCALQALYSWQISRNDAIEIQKYVL 35
>gi|261327382|emb|CBH10357.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 381
Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 69 FRVIIHGVMDRKQHIDLLISSCLT-------EKWSFSRLDMILCSILRAGVLELIECHSV 121
I V+ R+ +IS S L L +L L
Sbjct: 216 LVQAITRVVQRRAWYHHIISRHHRWFKEDCGGVKDLSLLGRPLDRVLCLENNPLSVHRQP 275
Query: 122 PVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI--KRSGCVS 166
+++ +YV A+ D +F+ VL +++ + + +R G V+
Sbjct: 276 RHSILVEDYVQPAN---SDDTLRFVAGVLRRIASRLRLAGERGGDVA 319
>gi|238028941|ref|YP_002913172.1| Sun protein [Burkholderia glumae BGR1]
gi|237878135|gb|ACR30468.1| Sun protein [Burkholderia glumae BGR1]
Length = 483
Score = 33.6 bits (75), Expect = 8.7, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 123 VEVIISEYVC-IAHDFFYGDEPKFINAVLDKVSRKEEI 159
++ + V I + +NAVL + R+ E
Sbjct: 140 PFTVVDQTVSAIGARREFAFAKGLVNAVLRRFLRERET 177
>gi|121609225|ref|YP_997032.1| sun protein [Verminephrobacter eiseniae EF01-2]
gi|121553865|gb|ABM58014.1| sun protein [Verminephrobacter eiseniae EF01-2]
Length = 470
Score = 33.6 bits (75), Expect = 9.0, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
R+ L+ L + +D +LC L ++++ V A
Sbjct: 75 RQAGRAELLRRQLAARTPPPAVDALLCVALALCWNPEDA--PYAPFTLVNQAVEAAKHSA 132
Query: 139 YGD-EPKFINAVLDKVSRKEEI 159
+ FINA L + R+ E
Sbjct: 133 AARAQSAFINACLRRFLREREA 154
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.126 0.331
Lambda K H
0.267 0.0386 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,012,777,172
Number of Sequences: 14124377
Number of extensions: 26946306
Number of successful extensions: 185888
Number of sequences better than 10.0: 3859
Number of HSP's better than 10.0 without gapping: 3381
Number of HSP's successfully gapped in prelim test: 478
Number of HSP's that attempted gapping in prelim test: 179821
Number of HSP's gapped (non-prelim): 4115
length of query: 170
length of database: 4,842,793,630
effective HSP length: 129
effective length of query: 41
effective length of database: 3,020,748,997
effective search space: 123850708877
effective search space used: 123850708877
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 75 (33.6 bits)