RPSBLAST alignment for GI: 254780345 and conserved domain: cd00620
>gnl|CDD|29566 cd00620, Methyltransferase_Sun, N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.. Length = 126
Score = 42.9 bits (101), Expect = 4e-05
Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 19 ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
AR A + L + G S ++S + + D +++G +
Sbjct: 3 ARSTAAEVLRDVLQRGASLNAVLSALQ------------KKDKSDRDRGLATELVYGTLR 50
Query: 79 RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
+D +I+ L K D + ++LR G+ +L VP + E V IA
Sbjct: 51 WLALLDWIINPLL--KKPDVGKDPDVRNLLRLGLYQL-LYLDVPPHAAVDETVEIAKIRK 107
Query: 139 YGDEPKFINAVLDKVSRKE 157
+NAVL + R++
Sbjct: 108 DLGRAGLVNAVLRRFERED 126