RPSBLAST alignment of GI: 254780345 and SCOP domain: d1sqga1

Alignment

 Score = 80.5 bits (198), Expect = 8e-17
 Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 16/140 (11%)

Query: 19  ARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMD 78
            R  A QA+ Q+   G S + I+   +        ++         D    + +  GV+ 
Sbjct: 3   LRSMAAQAVEQVVEQGQSLSNILPPLQQ-------KVS------DKDKALLQELCFGVLR 49

Query: 79  RKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFF 138
               +D LI+         +     +  ++  G+ + +    +P    ++E V  A    
Sbjct: 50  TLSQLDWLINKL--MARPMTGKQRTVHYLIMVGLYQ-LLYTRIPPHAALAETVEGAIAIK 106

Query: 139 YGDEPKFINAVLDKVSRKEE 158
                  IN VL +  R++E
Sbjct: 107 RPQLKGLINGVLRQFQRQQE 126

SCOP domain information

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: RmsB N-terminal domain-like
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain
species: Escherichia coli [TaxId: 562]