HHsearch alignment for GI: 254780346 and conserved domain: COG0054
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=320.98 Aligned_cols=139 Identities=33% Similarity=0.572 Sum_probs=132.1
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEE---EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 587179998031289999999999999998799555---55300144226999999863311378535665412000665
Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWS---SIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149)
Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~---~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149)
T Consensus 11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~----~~~yDAvv~lG~VIrG~T 86 (152)
T COG0054 11 KGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLAR----TGKYDAVVALGAVIRGET 86 (152)
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHH----CCCCCEEEEEEEEEECCC
T ss_conf 7756999975432799999999999999982997445269982872326899999973----189566999646981797
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 246789999999999999743997056542558899999950656574569999999999999986
Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKS 146 (149)
Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~ 146 (149)
T Consensus 87 ~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~~ 152 (152)
T COG0054 87 YHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLKK 152 (152)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 408999989999999988740997586623788699999872764444289999999999998619