HHsearch alignment for GI: 254780346 and conserved domain: COG0054

>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=320.98  Aligned_cols=139  Identities=33%  Similarity=0.572  Sum_probs=132.1

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEE---EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf             587179998031289999999999999998799555---55300144226999999863311378535665412000665
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWS---SIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT   80 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~---~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT   80 (149)
T Consensus        11 ~~~riaIV~arfn~~I~d~ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~----~~~yDAvv~lG~VIrG~T   86 (152)
T COG0054          11 KGLRIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLAR----TGKYDAVVALGAVIRGET   86 (152)
T ss_pred             CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHH----CCCCCEEEEEEEEEECCC
T ss_conf             7756999975432799999999999999982997445269982872326899999973----189566999646981797


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             246789999999999999743997056542558899999950656574569999999999999986
Q gi|254780346|r   81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKS  146 (149)
Q Consensus        81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~  146 (149)
T Consensus        87 ~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eqA~~rag~~~gnkG~~Aa~aAlem~~l~~~  152 (152)
T COG0054          87 YHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERAGTKAGNKGAEAAEAALEMANLLKK  152 (152)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             408999989999999988740997586623788699999872764444289999999999998619