HHsearch alignment for GI: 254780346 and conserved domain: PRK06455
>PRK06455 riboflavin synthase; Provisional.
Probab=98.21 E-value=7.7e-05 Score=51.02 Aligned_cols=130 Identities=18% Similarity=0.244 Sum_probs=92.5
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCC--CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf 8717999803128999999999999999879--95555530014422699999986331137853566541200066524
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRA--VQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~--~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149)
T Consensus 1 m~kiGi~DTTFaR---vdMg~~Aidel~~~~~~~~i~RyTVPGiKDlPvaakkLiee----~gCdiVmalGmp--G~~~~ 71 (155)
T PRK06455 1 MKKIGIADTTFAR---VDMGSAAIDELRKLVPGAKIIRYTVPGIKDLPVAAKKLIEE----EGCDIVMALGMP--GPTEK 71 (155)
T ss_pred CCEEEEECCCHHH---HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH----CCCCEEEECCCC--CCCCH
T ss_conf 9657873250222---21489999999973999638998179844467999999987----099789985776--87431
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCC---CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 6789999999999999743997056542558---8999999506565745699999999999999863
Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVD---SEQQAFDRVSPSHLDRGGCAARSALAMIELKKSL 147 (149)
Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~---n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l 147 (149)
T Consensus 72 DK~~a~~aS~GLi~~Ql~T~kHIieVfVHEDEa~d~keL~~la----~~RareHa~N~v~ll~~p~~L 135 (155)
T PRK06455 72 DKYSAHEASIGLIMAQLMTNKHIIEVFVHEDEAKDEKELKELA----EDRAREHAENLVKLLFKPEAL 135 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHCHHHH
T ss_conf 4788999978999999982885899987144568989999999----999999999999998696988