HHsearch alignment for GI: 254780346 and conserved domain: PRK10014

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional.
Probab=95.20  E-value=0.3  Score=28.76  Aligned_cols=128  Identities=12%  Similarity=0.024  Sum_probs=78.2

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             87179998031289999999999999998799555553-00144226999999863311378535665412000665246
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
T Consensus       182 hr~Ia~i~~~~~~~~~~~R~~gf~~al~~~~l~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~tAi~c----------~~  251 (342)
T PRK10014        182 HQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVVC----------YN  251 (342)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE----------EC
T ss_conf             98699995788863399999999999997699988334896689789999999999836999718999----------67


Q ss_pred             HHHHHHHHHHHHHHHHHCC-------CCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             7899999999999997439-------97056542558899999950------65657456999999999999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGS-------LPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~-------~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       252 D~~A~g~~~~l~~~g~~v~~d~~~~~ip~~vsIigfdd~~~~~~~~P~LTtv~~~~~~ig~~a~~~Ll~~i~  323 (342)
T PRK10014        252 ETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEAELDDPPLTWASTPAREIGRTLADRMMQRIT  323 (342)
T ss_pred             HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             899999999999958221755333478985899998884888625898569983999999999999999966