HHsearch alignment for GI: 254780346 and conserved domain: PRK10423

>PRK10423 transcriptional repressor RbsR; Provisional.
Probab=95.09  E-value=0.33  Score=28.57  Aligned_cols=102  Identities=12%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf             71799980312899999999999999987995555-53001442269999998633113785356654120006652467
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD   84 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e   84 (149)
T Consensus       175 r~I~~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~~~~~~~~~~~g~~~~~~ll~~~~~ptAi~~~----------nD  244 (327)
T PRK10423        175 TRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLAHPLRPQAVFTG----------ND  244 (327)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CC
T ss_conf             74999668876617999999999999985999884369960467378999999998479999845517----------80


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf             89999999999999743997056542558899999
Q gi|254780346|r   85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAF  119 (149)
Q Consensus        85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~  119 (149)
T Consensus       245 ~~A~g~~~al~~~g--~~iP~DisvigfDd~~~~~  277 (327)
T PRK10423        245 AMAVGVYQALYQAG--LQVPQDIAVIGYDDIELAS  277 (327)
T ss_pred             HHHHHHHHHHHHCC--CCCCCCEEEEEECCCHHHH
T ss_conf             99999999999869--9999975999975828998