HHsearch alignment for GI: 254780346 and conserved domain: PRK10423
>PRK10423 transcriptional repressor RbsR; Provisional.
Probab=95.09 E-value=0.33 Score=28.57 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=40.6
Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf 71799980312899999999999999987995555-53001442269999998633113785356654120006652467
Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149)
Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149)
T Consensus 175 r~I~~i~~~~~~~~~~~R~~gf~~al~~~gl~~~~~~~~~~~~~~~~g~~~~~~ll~~~~~ptAi~~~----------nD 244 (327)
T PRK10423 175 TRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMQQLLAHPLRPQAVFTG----------ND 244 (327)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CC
T ss_conf 74999668876617999999999999985999884369960467378999999998479999845517----------80
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 89999999999999743997056542558899999
Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAF 119 (149)
Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~ 119 (149)
T Consensus 245 ~~A~g~~~al~~~g--~~iP~DisvigfDd~~~~~ 277 (327)
T PRK10423 245 AMAVGVYQALYQAG--LQVPQDIAVIGYDDIELAS 277 (327)
T ss_pred HHHHHHHHHHHHCC--CCCCCCEEEEEECCCHHHH
T ss_conf 99999999999869--9999975999975828998