HHsearch alignment for GI: 254780346 and conserved domain: PRK11041

>PRK11041 DNA-binding transcriptional regulator CytR; Provisional.
Probab=94.36  E-value=0.5  Score=27.45  Aligned_cols=121  Identities=16%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHH--HHHH-HHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf             7179998031289999999999999998799555553-00144--2269-999998633113785356654120006652
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVL--EIPA-AVSMVMNAKTRSVTYDGIIVLGVVMRGKTA   81 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~--EiP~-a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~   81 (149)
T Consensus       185 r~I~~i~~~~~~~~~~~R~~G~~~al~~~gl~~~~~~i~~~~~~~~~g~~~~~~ll---~~~~~ptAi~~~---------  252 (341)
T PRK11041        185 KRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKAMQQLL---ELPQPPTAVFCH---------  252 (341)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH---HCCCCCCEEEEC---------
T ss_conf             76999968987768999999999999986999991048954676799999999999---559998579876---------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHH
Q ss_conf             46789999999999999743997056542558899999950------6565745699999999999
Q gi|254780346|r   82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMI  141 (149)
Q Consensus        82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi  141 (149)
T Consensus       253 -nD~~A~g~l~al~~~G--l~VP~DisViGfdd~~~~~~~~P~LTTV~~~~~~~g~~A~~~L~~~i  315 (341)
T PRK11041        253 -SDVMALGALSQAKRQG--LKVPQDLSIIGFDNIDLAQFCDPPLTTIAQPRYEIGREAMLLLLDQL  315 (341)
T ss_pred             -CHHHHHHHHHHHHHHC--CCCCCCEEEEEECCHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf             -7799999999999718--98999659999888389852699836998199999999999999996