>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

Probab=95.92 E-value=0.14 Score=30.78 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=68.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) T Consensus 118 ~~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dai~~~----------~d 187 (264) T cd01537 118 HRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAA----------ND 187 (264) T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC----------CH T ss_conf 86245304887770699999999999997799985379957999899999999998508997699989----------86 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH Q ss_conf 899999999999997439970565425588999999506------5657456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149) T Consensus 188 ~~A~gv~~al~~~g~--~ip~di~ivg~d~~~~~~~~~p~ltti~~~~~~~g~~a~~~l~~~i~ 249 (264) T cd01537 188 DMALGALRALREAGL--RVPDDISVIGFDGTPEALLAGPPLTTVRQPPDELGRAAVELLLELLN 249 (264) T ss_pred HHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 999999999997499--99998399999974999971998299983999999999999999965

HHsearch alignment for GI: 254780346 and conserved domain: cd01537