HHsearch alignment for GI: 254780346 and conserved domain: cd01545
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=95.45 E-value=0.25 Score=29.27 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=80.0
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-EEHHH--HHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 871799980312899999999999999987995555-53001--4422699-9999863311378535665412000665
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-IVTPG--VLEIPAA-VSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-i~VPG--a~EiP~a-~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149)
T Consensus 118 ~~~I~~i~g~~~~~~~~~R~~Gf~~a~~~~gi~~~~~~i~~~~~s~~~~~~~~~~ll~---~~~~~tai~~~-------- 186 (270)
T cd01545 118 HRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLA---LPDRPTAIFAS-------- 186 (270)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHH---CCCCCCEEEEC--------
T ss_conf 9659993699777369999999999999839997721220265310269999999985---59998589978--------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 246789999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 187 --nD~~A~g~~~~l~~~g~--~iP~dvsiigfD~~~~~~~~~P~LTti~q~~~~~g~~A~~~Ll~~i~ 250 (270)
T cd01545 187 --NDDMAAGVLAVAHRRGL--RVPDDLSVVGFDDTPIATTIWPPLTTVRQPIAEMARAAAELLIARLR 250 (270)
T ss_pred --CHHHHHHHHHHHHHHCC--CCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf --88999999999998189--99998699998885999835898249971999999999999999956