HHsearch alignment for GI: 254780346 and conserved domain: cd06286
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=95.24 E-value=0.29 Score=28.85 Aligned_cols=123 Identities=13% Similarity=0.004 Sum_probs=81.2
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf 87179998031289999999999999998799555553-001--44226999-999863311378535665412000665
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAV-SMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~-~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149)
T Consensus 114 ~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~p~ai~~~-------- 182 (260)
T cd06286 114 YRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFTIEDGERIGHQLL---KMKDRPDAIFTG-------- 182 (260)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH---HCCCCCCEEEEC--------
T ss_conf 973999938988704999999999999977999773036446520667999999998---449998736736--------
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH----CCCCCCCHHHHHHHHHHHHH
Q ss_conf 246789999999999999743997056542558899999950----65657456999999999999
Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV----SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~----~~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 183 --nd~~A~g~~~al~~~--g~~vP~di~vigfdd~~~~~~p~lTtv~~~~~~~g~~A~~~ll~~i~ 244 (260)
T cd06286 183 --SDEVAAGIITEAKKQ--GIRVPEDLAIIGFDNQPISELLGITTIDQPVKELGEKAFELLLNQLE 244 (260)
T ss_pred --CHHHHHHHHHHHHHC--CCCCCCCEEEEEECCHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHC
T ss_conf --899999999999972--99999976999989849982899758935999999999999999976