HHsearch alignment for GI: 254780346 and conserved domain: cd06298

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=91.75  E-value=1.2  Score=25.00  Aligned_cols=122  Identities=13%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             CCEEEEEEECHHHHH-HHHHHHHHHHHHHHCCCCEEE--E-EHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEECCC
Q ss_conf             871799980312899-999999999999987995555--5-300144226999-99986331137853566541200066
Q gi|254780346|r    5 IPHVLIIEARFYENL-SAMLFEGCVNVLHSRAVQWSS--I-VTPGVLEIPAAV-SMVMNAKTRSVTYDGIIVLGVVMRGK   79 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i-~~~ll~ga~~~l~~~~~~~~~--i-~VPGa~EiP~a~-~~~~~~~~~~~~~D~vIaLG~VIkGe   79 (149)
T Consensus       116 ~~~I~~i~~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~l~----~~~~~~ai~~~-------  184 (268)
T cd06298         116 HKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELL----EDGKPTAAFVT-------  184 (268)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHEECCCHHHHHHHHHHHHHH----HCCCCCEEEEC-------
T ss_conf             9669999678777625999999999999984999760120035403778999999998----36999789966-------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             5246789999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r   80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       185 ---nD~~A~g~l~~l~~~g~--~vP~disvigfDd~~~a~~~~P~LTtv~~~~~~~G~~A~~~l~~~i~  248 (268)
T cd06298         185 ---DDELAIGILNAAQDAGL--KVPEDFEIIGFNNTKLASMVRPQLTSVTQPLYDIGAVAMRLLTKLMN  248 (268)
T ss_pred             ---CHHHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             ---87999999999997499--99987499997881899714899769972999999999999999966