HHsearch alignment for GI: 254780346 and conserved domain: pfam00885
>pfam00885 DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase. This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function.
Probab=100.00 E-value=0 Score=332.00 Aligned_cols=139 Identities=34% Similarity=0.580 Sum_probs=132.8
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf 871799980312899999999999999987995---55553001442269999998633113785356654120006652
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149)
T Consensus 3 ~~kI~IV~s~~n~~i~~~l~~~a~~~l~~~g~~~~~i~~~~VPGa~EiP~~~~~l~~----~~~~d~iIalG~VIkGeT~ 78 (144)
T pfam00885 3 GLRIAIVVARFNADITDRLLEGALDALKRHGVSEEDIDVVRVPGAFELPLAAKKLAK----SGRYDAVVALGAVIRGGTY 78 (144)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEEECCCC
T ss_conf 988999980375999999999999999986999310589987968899999999986----4898879999999837984
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 467899999999999997439970565425588999999506565745699999999999999863
Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSL 147 (149)
Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l 147 (149)
T Consensus 79 H~e~I~~~v~~gl~~l~l~~~~PI~~gILt~~n~eQA~~R~~~~~~nkG~eaA~aal~m~~l~~~l 144 (144)
T pfam00885 79 HFDYVAQEVSRGLMQVSLETGVPVGFGVLTTDTFEQALERAGGKAGNKGAEAALAALEMANLLKKL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999982679807998627899899999828988786899999999999998509