HHsearch alignment of GI: 254780346 and MMDB domain: 2iks_A_1-121_252-293

>2iks_A (A:1-121,A:252-293) DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}

Probab=90.83  E-value=1.3  Score=24.43  Aligned_cols=68  Identities=9%  Similarity=-0.021  Sum_probs=51.5

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf             871799980312899999999999999987995555530014422699-9999863311378535665412000
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLGVVMR   77 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG~VIk   77 (149)
                      +..|+++.+++....-..+++|..+.+.++|+..-...+.+.-|--.. ++.+     .+.++||+|..++...
T Consensus        20 S~tIgvivpdl~~~ff~~ii~gI~~~a~~~Gy~vii~~s~~~~e~e~~~l~~l-----~~~~vDGiIl~~~~~~   88 (163)
T 2iks_A           20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEXRCIEHL-----LQRQVDAIIVSTSLPP   88 (163)
T ss_dssp             CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-----HHTTCSEEEECCSSCT
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHC-----CCCCCCEEEEECCCCC
T ss_conf             99899992999887999999999999998699999994799758899987620-----1454435788314332