HHsearch alignment of GI: 254780346 and MMDB domain: 3e61_A_1-100_232-251
>3e61_A (A:1-100,A:232-251) Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=91.98 E-value=1 Score=25.16 Aligned_cols=85 Identities=8% Similarity=0.005 Sum_probs=59.6
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf 587179998031289999999999999998799555553001442269-9999986331137853566541200066524
Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPA-AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149)
Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~-a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149)
....|++|...+....-..++.|..+.+.++|+..-.....+.-+--. .++.+. ..++||+|..|+- +
T Consensus 7 ~s~~Igvi~p~~~~~f~~~i~~gi~~aa~~~gy~v~i~~~~~d~~~~~~~i~~l~-----~~~vDGIIi~~~~------~ 75 (120)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFV-----SHNCTGMISTAFN------E 75 (120)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEECGGG------H
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCCEEECCCC------H
T ss_conf 9998999929996789999999999999986999999968999899999999998-----4466422531431------1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 67899999999999997439970565
Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNG 108 (149)
Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~g 108 (149)
. ...+...+.++|+.+-
T Consensus 76 ~---------~~~~~~~~~~iPvV~i 92 (120)
T 3e61_A 76 N---------IIENTLTDHHIPFVFI 92 (120)
T ss_dssp H---------HHHHHHHHC-CCEEEG
T ss_pred H---------HHHHHHHHCCCCEEEE
T ss_conf 5---------5787764037530355