HHsearch alignment of GI: 254780346 and MMDB domain: 3e61_A_1-100_232-251

>3e61_A (A:1-100,A:232-251) Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=91.98  E-value=1  Score=25.16  Aligned_cols=85  Identities=8%  Similarity=0.005  Sum_probs=59.6

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             587179998031289999999999999998799555553001442269-9999986331137853566541200066524
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPA-AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~-a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      ....|++|...+....-..++.|..+.+.++|+..-.....+.-+--. .++.+.     ..++||+|..|+-      +
T Consensus         7 ~s~~Igvi~p~~~~~f~~~i~~gi~~aa~~~gy~v~i~~~~~d~~~~~~~i~~l~-----~~~vDGIIi~~~~------~   75 (120)
T 3e61_A            7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFV-----SHNCTGMISTAFN------E   75 (120)
T ss_dssp             ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEECGGG------H
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCCEEECCCC------H
T ss_conf             9998999929996789999999999999986999999968999899999999998-----4466422531431------1


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             67899999999999997439970565
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNG  108 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~g  108 (149)
                      .         ...+...+.++|+.+-
T Consensus        76 ~---------~~~~~~~~~~iPvV~i   92 (120)
T 3e61_A           76 N---------IIENTLTDHHIPFVFI   92 (120)
T ss_dssp             H---------HHHHHHHHC-CCEEEG
T ss_pred             H---------HHHHHHHHCCCCEEEE
T ss_conf             5---------5787764037530355