HHsearch alignment of GI: 254780346 and MMDB domain: 3egc_A_1-108_241-291

>3egc_A (A:1-108,A:241-291) Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=90.35  E-value=1.5  Score=24.17  Aligned_cols=119  Identities=14%  Similarity=-0.001  Sum_probs=73.6

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             58717999803128999999999999999879955555300144226999999863311378535665412000665246
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
                      ....|+++...+....-..++.|..+.+.+.|+........+.-|..-..-..    .....+||+|..+.-..     .
T Consensus         7 kS~~IGviip~l~~~f~~~ii~gie~aa~~~Gy~l~i~~~~~d~e~~~~~l~~----l~~~~vDGIII~~~~~~-----~   77 (159)
T 3egc_A            7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQ----FFERRVDGLILAPSEGE-----H   77 (159)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHH----HHHTTCSEEEECCCSSC-----C
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH----HHHCCCCEEEEECCCCC-----H
T ss_conf             88999999299988899999999999999869989999689997999999999----98569738853101211-----0


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             78999999999999974399705654255889999995065657456999999999999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~  142 (149)
                               ...+...+.++|++.-==..++.  -....+.+...-|.||.+-.+.|+.
T Consensus        78 ---------~~i~~l~~~giPvV~id~~~~~~--~~~~V~~D~~~~~~~~~~~~~~~~~  125 (159)
T 3egc_A           78 ---------DYLRTELPKTFPIVAVNRELRIP--GCGAVLSETRRIGQEAMRMLIHMIE  125 (159)
T ss_dssp             ---------HHHHHSSCTTSCEEEESSCCCCT--TCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHCCCCCCCCCCCCCC--CCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf             ---------15899986335542234555688--7448974499999999999999966