HHsearch alignment of GI: 254780346 and MMDB domain: 3egc_A_1-108_241-291
>3egc_A (A:1-108,A:241-291) Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=90.35 E-value=1.5 Score=24.17 Aligned_cols=119 Identities=14% Similarity=-0.001 Sum_probs=73.6
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf 58717999803128999999999999999879955555300144226999999863311378535665412000665246
Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149)
Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149)
....|+++...+....-..++.|..+.+.+.|+........+.-|..-..-.. .....+||+|..+.-.. .
T Consensus 7 kS~~IGviip~l~~~f~~~ii~gie~aa~~~Gy~l~i~~~~~d~e~~~~~l~~----l~~~~vDGIII~~~~~~-----~ 77 (159)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQ----FFERRVDGLILAPSEGE-----H 77 (159)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHH----HHHTTCSEEEECCCSSC-----C
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH----HHHCCCCEEEEECCCCC-----H
T ss_conf 88999999299988899999999999999869989999689997999999999----98569738853101211-----0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78999999999999974399705654255889999995065657456999999999999
Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~ 142 (149)
...+...+.++|++.-==..++. -....+.+...-|.||.+-.+.|+.
T Consensus 78 ---------~~i~~l~~~giPvV~id~~~~~~--~~~~V~~D~~~~~~~~~~~~~~~~~ 125 (159)
T 3egc_A 78 ---------DYLRTELPKTFPIVAVNRELRIP--GCGAVLSETRRIGQEAMRMLIHMIE 125 (159)
T ss_dssp ---------HHHHHSSCTTSCEEEESSCCCCT--TCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHCCCCCCCCCCCCCC--CCEEEEEHHHHHHHHHHHHHHHHHC
T ss_conf ---------15899986335542234555688--7448974499999999999999966