HHsearch alignment of GI: 254780346 and MMDB domain: 3jvd_A_1-157_286-333

>3jvd_A (A:1-157,A:286-333) Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=91.18  E-value=1.2  Score=24.63  Aligned_cols=102  Identities=21%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE--------
Q ss_conf             871799980312899999999999999987995555530014422699999986331137853566541200--------
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVM--------   76 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VI--------   76 (149)
                      ...|+++...++......++.|+.+.+.++|+..-.......-+--.+++.+..     .++||+|..+.+-        
T Consensus        64 s~~Igviip~~~npff~~ii~gi~~~a~~~g~~lii~~~~~~~~~~~~le~l~~-----~~vdGIIi~p~i~~l~~~~iP  138 (205)
T 3jvd_A           64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLIS-----IQAAGIIHVPVVGSIAPEGIP  138 (205)
T ss_dssp             CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHH-----HTCSEEEECCCTTCCC-CCSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCC
T ss_conf             617766511345633666666678787764301233333221012332200222-----110112467621000002453


Q ss_pred             --------CCC------CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             --------066------524678999999999999974399705654255
Q gi|254780346|r   77 --------RGK------TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVV  112 (149)
Q Consensus        77 --------kGe------T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~  112 (149)
                              .+.      ++| |-+..+..+-|.++--+-++|.+--+|.-
T Consensus       139 vV~Id~~~~~~~~~sV~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (205)
T 3jvd_A          139 MVQLTRGELGPGFPRVLCDH-EEMGKEAVRLLVDLIENPELPTGDVVLQG  187 (205)
T ss_dssp             EEEECC----CCSCEEEECH-HHHHHHHHHHHHHHHHSCC--CCCEEECC
T ss_pred             EEEECCCCCCCCCCEEEECH-HHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             25650456789998899569-99999999999999639899984799848