HHsearch alignment of GI: 254780346 and MMDB domain: 3jy6_A_1-106_224-276
>3jy6_A (A:1-106,A:224-276) Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=94.69 E-value=0.027 Score=34.88 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=79.0
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf 587179998031289999999999999998799555553001442269-9999986331137853566541200066524
Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPA-AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149)
Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~-a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149)
....|+++..++.......+++|..+.+.++|+..-.....+.-+--. .++.+ ...++||+|..|.- +
T Consensus 6 ~s~~Igvi~~~~~~~~~~~i~~gi~~~~~~~gy~l~i~~~~~~~~~~~~~l~~l-----~~~~vdGiIi~~~~------~ 74 (159)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAI-----GSRGFDGLILQSFS------N 74 (159)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHH-----HTTTCSEEEEESSC------C
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCCCCCCCCC------H
T ss_conf 899899992899898999999999999998699999994899989999999999-----95388853124620------0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEE----------EECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 67899999999999997439970565----------4255889999995065657456999999999999
Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNG----------IVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~g----------ILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~ 142 (149)
.+.+ +-..+.++|+.+- -+.++|.+.++-=..-....-|+.|++..+++++
T Consensus 75 ~~~~---------~~l~~~~iPvV~i~~~~~~~~~~~V~~Dd~~P~LTTv~~~~~~mg~~a~~~l~~~i~ 135 (159)
T 3jy6_A 75 PQTV---------QEILHQQMPVVSVDREMDACPWPQVVTDRMEPKLTLITQNPFLMGASSAEIMLRQLA 135 (159)
T ss_dssp HHHH---------HHHHTTSSCEEEESCCCTTCSSCEEECCCC--CCCEEECCHHHHHHHHHHHHHHHHT
T ss_pred HHHH---------HHHHHCCCCEECCCCCCCCCCCCCCCCCHCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 4778---------888862873000234545577874255635899649985999999999999999974