HHsearch alignment of GI: 254780346 and MMDB domain: 3jy6_A_1-106_224-276

>3jy6_A (A:1-106,A:224-276) Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=94.69  E-value=0.027  Score=34.88  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=79.0

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             587179998031289999999999999998799555553001442269-9999986331137853566541200066524
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPA-AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~-a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      ....|+++..++.......+++|..+.+.++|+..-.....+.-+--. .++.+     ...++||+|..|.-      +
T Consensus         6 ~s~~Igvi~~~~~~~~~~~i~~gi~~~~~~~gy~l~i~~~~~~~~~~~~~l~~l-----~~~~vdGiIi~~~~------~   74 (159)
T 3jy6_A            6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAI-----GSRGFDGLILQSFS------N   74 (159)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHH-----HTTTCSEEEEESSC------C
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCCCCCCCCC------H
T ss_conf             899899992899898999999999999998699999994899989999999999-----95388853124620------0


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEE----------EECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67899999999999997439970565----------4255889999995065657456999999999999
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNG----------IVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~g----------ILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~  142 (149)
                      .+.+         +-..+.++|+.+-          -+.++|.+.++-=..-....-|+.|++..+++++
T Consensus        75 ~~~~---------~~l~~~~iPvV~i~~~~~~~~~~~V~~Dd~~P~LTTv~~~~~~mg~~a~~~l~~~i~  135 (159)
T 3jy6_A           75 PQTV---------QEILHQQMPVVSVDREMDACPWPQVVTDRMEPKLTLITQNPFLMGASSAEIMLRQLA  135 (159)
T ss_dssp             HHHH---------HHHHTTSSCEEEESCCCTTCSSCEEECCCC--CCCEEECCHHHHHHHHHHHHHHHHT
T ss_pred             HHHH---------HHHHHCCCCEECCCCCCCCCCCCCCCCCHCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf             4778---------888862873000234545577874255635899649985999999999999999974