HHsearch results for GI: 254780346 and protein with PDBid: 1u9c_A
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=94.34 E-value=0.25 Score=27.98 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=61.6
Q ss_pred CCCCCEEEEEEECH------------HHHHHHHHHHHHHHHHHHCCCCEEEEEHHH------------HHHHHHHHHHHH
Q ss_conf 66587179998031------------289999999999999998799555553001------------442269999998
Q gi|254780346|r 2 EVFIPHVLIIEARF------------YENLSAMLFEGCVNVLHSRAVQWSSIVTPG------------VLEIPAAVSMVM 57 (149)
Q Consensus 2 ~~~~~kI~IV~s~~------------~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG------------a~EiP~a~~~~~ 57 (149)
|.|.+||+||.|+. .+|. -...+.|.+.|++++.....| .+.........+
T Consensus 2 ~~M~KkvLiv~s~~~~~~~~~~tG~~~~E~-----~~P~~~l~~aG~~V~iaSp~gg~~~~d~~~~~~~~~~~~~~~~~l 76 (224)
T 1u9c_A 2 NAMSKRVLMVVTNHTTITDDHKTGLWLEEF-----AVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAAL 76 (224)
T ss_dssp --CCCEEEEEECCCCEEETTEECCBCHHHH-----HHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHT
T ss_pred CCCCCEEEEEECCCHHCCCCCCCCCCHHHH-----HHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 867773899975810216887563028889-----999999998899799994489841144054531103568888886
Q ss_pred HHH-----HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 633-----11378535665412000665246789999999999999743997056
Q gi|254780346|r 58 NAK-----TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149)
Q Consensus 58 ~~~-----~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149)
+.. ....+||+++.-| |--.-+++-.+.....+.+-..+.++||+-
T Consensus 77 ~~~~~l~~v~~~dydav~ipG----G~g~~~~l~~~~~l~~li~~~~~~~k~iaa 127 (224)
T 1u9c_A 77 KHTARLSKDDAHGFDAIFLPG----GHGTMFDFPDNETLQYVLQQFAEDGRIIAA 127 (224)
T ss_dssp TSBEECCGGGGSSCSEEEECC----CTTHHHHSTTCHHHHHHHHHHHHTTCEEEE
T ss_pred HCCCCHHHCCHHHCCEEEECC----CCCHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 376885567975689899589----830777521158999999999975997999