Query         gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 149
No_of_seqs    114 out of 1909
Neff          5.8 
Searched_HMMs 13730
Date          Wed Jun  1 03:06:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780346.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1c2ya_ c.16.1.1 (A:) Lumazine 100.0       0       0  337.6  18.1  143    3-149    11-155 (155)
  2 d1nqua_ c.16.1.1 (A:) Lumazine 100.0       0       0  335.7  17.8  143    2-148     9-154 (154)
  3 d1c41a_ c.16.1.1 (A:) Lumazine 100.0       0       0  333.2  18.8  148    2-149     8-192 (195)
  4 d1rvv1_ c.16.1.1 (1:) Lumazine 100.0       0       0  334.0  18.0  142    3-148    10-154 (154)
  5 d1ejba_ c.16.1.1 (A:) Lumazine 100.0       0       0  329.3  18.1  146    1-146    12-165 (168)
  6 d1di0a_ c.16.1.1 (A:) Lumazine 100.0       0       0  328.1  11.8  140    5-148     2-147 (148)
  7 d1kz1a_ c.16.1.1 (A:) Lumazine 100.0       0       0  316.7  17.8  137    1-141     5-146 (150)
  8 d1dbqa_ c.93.1.1 (A:) Purine r  91.9    0.42 3.1E-05   25.1   7.7   64    6-74      1-65  (282)
  9 d1jyea_ c.93.1.1 (A:) Lac-repr  88.3    0.83 6.1E-05   23.2   7.5   99    6-117   119-217 (271)
 10 d1d4aa_ c.23.5.3 (A:) NAD(P)H:  87.8    0.46 3.3E-05   24.8   5.0   40    4-43      1-41  (273)
 11 d1guda_ c.93.1.1 (A:) D-allose  83.0     1.5 0.00011   21.6   7.2   66    6-73      2-67  (288)
 12 d1rrma_ e.22.1.2 (A:) Lactalde  82.0     1.6 0.00011   21.5   5.6   63    5-73     30-95  (385)
 13 d2nzug1 c.93.1.1 (G:58-332) Gl  79.2     2.1 0.00015   20.8   8.2   68    4-76      2-70  (275)
 14 d1tjya_ c.93.1.1 (A:) AI-2 rec  78.7     2.1 0.00016   20.7   6.4   68    4-74      2-69  (316)
 15 d1p80a1 c.23.16.3 (A:598-753)   76.5    0.44 3.2E-05   24.9   1.3   95    3-107     1-100 (156)
 16 d2a5la1 c.23.5.8 (A:3-198) Trp  76.1     2.1 0.00015   20.8   4.7   40    5-45      1-40  (196)
 17 d8abpa_ c.93.1.1 (A:) L-arabin  74.7     2.8  0.0002   20.0   8.8   32    7-38      3-34  (305)
 18 d1qvwa_ c.23.16.2 (A:) Hypothe  74.6     2.3 0.00017   20.5   4.6   99    5-107     2-135 (236)
 19 d1u9ca_ c.23.16.2 (A:) GK2698   74.2     2.8 0.00021   19.9   8.2   99    4-107     1-124 (221)
 20 d1p5fa_ c.23.16.2 (A:) DJ-1 {H  72.9     1.7 0.00012   21.4   3.6   95    5-107     1-102 (186)
 21 d1ycga1 c.23.5.1 (A:251-399) N  71.0     3.4 0.00025   19.5   9.1   67    5-83      2-70  (149)
 22 d1ydga_ c.23.5.8 (A:) Trp repr  68.6     3.8 0.00028   19.2   4.6   38    6-44      3-40  (201)
 23 d2qwxa1 c.23.5.3 (A:1-230) Qui  65.6     4.4 0.00032   18.8   4.7   38    6-43      3-41  (230)
 24 d1jq5a_ e.22.1.2 (A:) Glycerol  65.2     4.4 0.00032   18.8   6.6   63    6-73     31-93  (366)
 25 d2arka1 c.23.5.8 (A:1-184) Fla  64.7     4.4 0.00032   18.7   4.3   39    5-45      1-41  (184)
 26 d2qv7a1 e.52.1.2 (A:1-312) Dia  63.9     4.7 0.00034   18.6   5.9  102    4-124     1-103 (312)
 27 d1e5da1 c.23.5.1 (A:251-402) R  61.9     5.1 0.00037   18.4   8.2   38    5-44      2-40  (152)
 28 d1vhca_ c.1.10.1 (A:) Hypothet  60.1     3.7 0.00027   19.3   3.2   87   27-121    31-126 (212)
 29 d1mxsa_ c.1.10.1 (A:) KDPG ald  58.2     4.3 0.00031   18.8   3.3   85   27-121    34-129 (216)
 30 d1byka_ c.93.1.1 (A:) Trehalos  52.5     7.3 0.00053   17.4   7.8  116    6-141   116-239 (255)
 31 d1vlja_ e.22.1.2 (A:) NADH-dep  50.7     7.8 0.00057   17.2   6.3   62    5-73     34-100 (398)
 32 d1sy7a1 c.23.16.3 (A:553-736)   49.6     4.2 0.00031   18.9   2.1   97    3-107     1-102 (184)
 33 d1wbha1 c.1.10.1 (A:1-213) KDP  48.0     4.3 0.00031   18.8   1.9   88   26-121    31-127 (213)
 34 d1oi4a1 c.23.16.2 (A:23-192) H  47.9     4.3 0.00031   18.8   1.9   94    5-107     1-101 (170)
 35 d1jx6a_ c.93.1.1 (A:) Quorum-s  45.7     9.3 0.00068   16.7  10.3   34    7-40     42-76  (338)
 36 d1wa3a1 c.1.10.1 (A:2-203) KDP  45.1     4.6 0.00034   18.6   1.7   87   26-121    25-122 (202)
 37 d2dria_ c.93.1.1 (A:) D-ribose  45.0     9.6  0.0007   16.7  11.3   35    6-40      2-36  (271)
 38 d2csua3 c.23.4.1 (A:291-453) A  40.8      11 0.00081   16.3  10.9   95   52-148    65-162 (163)
 39 d2f7wa1 c.57.1.1 (A:2-174) Mog  40.6      11 0.00081   16.3   3.4   80    4-90      1-87  (173)
 40 d1g2ia_ c.23.16.2 (A:) Intrace  38.3     7.9 0.00057   17.2   2.0   92    7-107     2-98  (166)
 41 d1o2da_ e.22.1.2 (A:) Alcohol   37.6      12 0.00091   16.0   6.4   63    5-73     28-94  (359)
 42 d1sqsa_ c.23.5.5 (A:) Hypothet  37.0      13 0.00093   15.9   4.2   38    5-42      1-40  (232)
 43 d2fzva1 c.23.5.4 (A:1-233) Put  36.3      13 0.00095   15.8   4.0   39    5-43     34-73  (233)
 44 d1wo8a1 c.24.1.2 (A:1-126) Met  35.7      13 0.00097   15.8   5.1  106    5-122     1-123 (126)
 45 d1pfka_ c.89.1.1 (A:) ATP-depe  35.3      14 0.00099   15.7   3.5  104    4-122     1-137 (320)
 46 d2a9va1 c.23.16.1 (A:1-196) GM  33.8      14   0.001   15.6   7.3   88    5-123     1-90  (196)
 47 d1xxla_ c.66.1.41 (A:) Hypothe  31.9     9.8 0.00072   16.6   1.7   48   18-75     45-92  (234)
 48 d1dkgd2 c.55.1.1 (D:186-383) H  31.1      16  0.0012   15.3   3.7   10   44-53    156-165 (198)
 49 d2bona1 e.52.1.2 (A:5-299) Lip  29.6      17  0.0012   15.2   7.5   97    6-124     1-100 (295)
 50 d2ex4a1 c.66.1.42 (A:2-224) Ad  29.4      14   0.001   15.7   2.1   48   18-75     90-137 (222)
 51 d1vl5a_ c.66.1.41 (A:) Hypothe  26.8      15  0.0011   15.5   1.9   20   18-37     44-63  (231)
 52 d1f4pa_ c.23.5.1 (A:) Flavodox  25.0      20  0.0015   14.6   4.9   38    6-44      1-38  (147)
 53 d1u11a_ c.23.8.1 (A:) N5-CAIR   24.9      20  0.0015   14.6   8.1  121    5-144     2-135 (159)
 54 d1o1ya_ c.23.16.1 (A:) Hypothe  24.0      21  0.0016   14.5   4.9   94    7-125     5-103 (230)
 55 d1vhqa_ c.23.16.2 (A:) Putativ  23.7      22  0.0016   14.5   2.8   36    5-40      1-38  (217)
 56 d1vmea1 c.23.5.1 (A:251-398) R  22.4      23  0.0017   14.3   6.6   69    5-82      3-73  (148)
 57 d2juza1 a.284.1.1 (A:1-72) Unc  21.9      21  0.0015   14.6   1.9   29   11-39      3-31  (72)
 58 d2nv0a1 c.23.16.1 (A:1-195) Hy  21.7      24  0.0017   14.2   8.4   86    5-123     1-89  (195)
 59 d1o63a_ c.94.1.1 (A:) ATP phos  21.4      24  0.0017   14.2   2.6   24   27-50    112-135 (203)
 60 d1wzna1 c.66.1.43 (A:1-251) Hy  20.8      25  0.0018   14.1   2.2   78   18-114    70-147 (251)
 61 d2fvya1 c.93.1.1 (A:2-306) Gal  20.0      26  0.0019   14.0  10.7  124    6-142   140-273 (305)

No 1  
>d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=100.00  E-value=0  Score=337.59  Aligned_cols=143  Identities=24%  Similarity=0.413  Sum_probs=135.2

Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf             65871799980312899999999999999987995--5555300144226999999863311378535665412000665
Q gi|254780346|r    3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ--WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT   80 (149)
Q Consensus         3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~--~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT   80 (149)
                      -...||+||.|+||++|+++|++||.+.|+++|++  ++.++||||||+|++++++++    +++|||+|||||||||||
T Consensus        11 ~~~~ki~IV~s~~n~~It~~L~~ga~~~l~~~g~~~~i~~~~VPGa~EiP~~~~~l~~----~~~~daiIaLG~VIkGeT   86 (155)
T d1c2ya_          11 AQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGDT   86 (155)
T ss_dssp             CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCSS
T ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCCCEEEEEEEEECCCC
T ss_conf             8897899999437699999999999999998399977189994437888999999985----379884999989970786


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             246789999999999999743997056542558899999950656574569999999999999986369
Q gi|254780346|r   81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLSE  149 (149)
Q Consensus        81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~~  149 (149)
                      +|||+||+++++|||++|+++++||+||||||+|++||++|++++.+|||.|||+||++|++|+|++-|
T Consensus        87 ~H~e~I~~~v~~gl~~lsl~~~~PV~~GILT~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~~k  155 (155)
T d1c2ya_          87 SHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK  155 (155)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf             188899999999999997441998796224889889999884664345799999999999999998519


No 2  
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00  E-value=0  Score=335.74  Aligned_cols=143  Identities=33%  Similarity=0.475  Sum_probs=134.5

Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC
Q ss_conf             665871799980312899999999999999987995---55553001442269999998633113785356654120006
Q gi|254780346|r    2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRG   78 (149)
Q Consensus         2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkG   78 (149)
                      +-...||+||.|+||++|+++|++||.+.|.++|+.   +++++||||||+|++++++++    +.+|||+|||||||||
T Consensus         9 ~~~~~ri~IV~s~~n~~I~~~Ll~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~l~~----~~~~daiIaLG~VIkG   84 (154)
T d1nqua_           9 TAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELAR----KEDIDAVIAIGVLIRG   84 (154)
T ss_dssp             CCTTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHT----CTTCCEEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHHH----HCCCCEEEEEEEEEEC
T ss_conf             689988999994576999999999999999985998456256770877771799999986----0477848988899717


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             6524678999999999999974399705654255889999995065657456999999999999998636
Q gi|254780346|r   79 KTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS  148 (149)
Q Consensus        79 eT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~  148 (149)
                      ||+|||+||+++++||+++|+++++||+|||||++|++||++|++++++|||.|||+||++|++++|+|.
T Consensus        85 eT~H~e~I~~~v~~gl~~lsl~~~~Pi~~GILt~~n~~QA~eR~~~~~~nkG~eaA~aal~mi~l~r~lk  154 (154)
T d1nqua_          85 ATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR  154 (154)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             8607779999999999999875399779862278988999987178543509999999999999998649


No 3  
>d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Probab=100.00  E-value=0  Score=333.23  Aligned_cols=148  Identities=24%  Similarity=0.384  Sum_probs=136.1

Q ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHH------------------
Q ss_conf             665871799980312899999999999999987995---55553001442269999998633------------------
Q gi|254780346|r    2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAK------------------   60 (149)
Q Consensus         2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~------------------   60 (149)
                      |-...||+||.|+||++|++.|++||.+.|++.|+.   +++++|||+||||+++++++.+.                  
T Consensus         8 d~s~lrI~IV~s~~n~~I~d~Ll~ga~~~L~~~Gv~~~~i~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~   87 (195)
T d1c41a_           8 DGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLG   87 (195)
T ss_dssp             CCSSCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSTTHHHHHHHHHHHHHHHC---------------
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             87899899997108789999999999999998599835685998885988999999998620111011211111111123


Q ss_pred             --------------HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC
Q ss_conf             --------------113785356654120006652467899999999999997439970565425588999999506565
Q gi|254780346|r   61 --------------TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH  126 (149)
Q Consensus        61 --------------~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~  126 (149)
                                    +.+++|||+|||||||||||+||||||+++++|||++|+++++||+|||||++|++||++|++.+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~yDaiIaLG~VIkGeT~Hfe~I~~~v~~gL~~lsl~~~~PIi~GILTv~n~eQA~~Ra~~~~  167 (195)
T d1c41a_          88 SSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIE  167 (195)
T ss_dssp             ---------------CCSCCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHTTCST
T ss_pred             CCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC
T ss_conf             44321100012455531786679998789845853888999999999999873169856998537799899998727777


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             --74569999999999999986369
Q gi|254780346|r  127 --LDRGGCAARSALAMIELKKSLSE  149 (149)
Q Consensus       127 --~nkG~eaa~Aal~mi~l~~~l~~  149 (149)
                        .|||.|||+||++|+.++|+|..
T Consensus       168 ~~~NKG~EAA~Aal~M~~l~r~l~~  192 (195)
T d1c41a_         168 GSHNHGEDWGLAAVEMGVRRRDWAA  192 (195)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             8875689999999999999998743


No 4  
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=0  Score=334.02  Aligned_cols=142  Identities=28%  Similarity=0.448  Sum_probs=134.5

Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC
Q ss_conf             65871799980312899999999999999987995---555530014422699999986331137853566541200066
Q gi|254780346|r    3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGK   79 (149)
Q Consensus         3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGe   79 (149)
                      -...||+||.|+||++|+++|++||.+.|.++|+.   +++++||||||+|++++++++    +++|||+||||||||||
T Consensus        10 ~~~~ki~IV~s~~n~~I~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~~~~----~~~~daiIalG~VIkGe   85 (154)
T d1rvv1_          10 GTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE----TKKYDAIITLGTVIRGA   85 (154)
T ss_dssp             CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEEEECCS
T ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEHHHHHHHHHC----CCCCCEEEEEEEEECCC
T ss_conf             89988999980176999999999999999985998667579997845318799998750----34656278888997178


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             524678999999999999974399705654255889999995065657456999999999999998636
Q gi|254780346|r   80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS  148 (149)
Q Consensus        80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~  148 (149)
                      |+|||+||++|++|||++|+++++||+|||||++|++||++|++++.+|||.|||+||++|++|+|+|.
T Consensus        86 T~H~e~I~~~v~~gl~~lsl~~~~PV~~GILt~~n~~QA~~R~~~~~~nKG~eaA~aal~m~~l~r~l~  154 (154)
T d1rvv1_          86 TTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE  154 (154)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             706778999999999999632798779862588988999998267654509999999999999986429


No 5  
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=0  Score=329.30  Aligned_cols=146  Identities=23%  Similarity=0.318  Sum_probs=134.6

Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE---EEEEHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEE
Q ss_conf             96658717999803128999999999999999879955---555300144226999999863311-37853566541200
Q gi|254780346|r    1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQW---SSIVTPGVLEIPAAVSMVMNAKTR-SVTYDGIIVLGVVM   76 (149)
Q Consensus         1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~---~~i~VPGa~EiP~a~~~~~~~~~~-~~~~D~vIaLG~VI   76 (149)
                      +|....||+||.|+||++|+++|++||.+.|+++|++.   ++++||||||||+++++++++... +.+|||+|+|||||
T Consensus        12 ~d~~~~rI~IV~s~~n~~I~~~Ll~ga~~~L~~~gi~~~~i~~~~VPGa~EiP~~~~~l~~~~~~~~~~~D~iI~LG~VI   91 (168)
T d1ejba_          12 YDGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLI   91 (168)
T ss_dssp             CCCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             68768989999710878999999999999999869986674699638716889999999987674068766698876676


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHH
Q ss_conf             06652467899999999999997439970565425588999999506565----74569999999999999986
Q gi|254780346|r   77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH----LDRGGCAARSALAMIELKKS  146 (149)
Q Consensus        77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~----~nkG~eaa~Aal~mi~l~~~  146 (149)
                      ||||+||||||++|++|||++|+++++||+|||||++|++||++|++++.    .|||.|||+||++|+.++++
T Consensus        92 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVLT~~n~~QA~~R~~~~~~~~~~nKG~EaA~aaleM~~~~~k  165 (168)
T d1ejba_          92 KGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNHGEDWGAAAVEMAVKFGK  165 (168)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHBTCSTTCCSCBHHHHHHHHHHHHHHHHST
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             16753778999999999999987539977989714799999998728654555567589999999999998645


No 6  
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=100.00  E-value=0  Score=328.07  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=131.0

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf             871799980312899999999999999987995---55553001442269999998633113785356654120006652
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA   81 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~   81 (149)
                      +.||+||.|+||++|+|+|++||.+.|.+.++.   +++++||||||||++++++++    +++|||+|+|||||||||+
T Consensus         2 s~rI~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~EiP~aa~~l~~----~~~~daiI~lG~VIkGeT~   77 (148)
T d1di0a_           2 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR----TGRYAAIVGAAFVIDGGIY   77 (148)
T ss_dssp             CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEECCCCSSB
T ss_pred             CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH----HCCCCEEEEEEEEECCCCH
T ss_conf             988999980287999999999999999985999300699973875662899999875----1466769999887638864


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHC
Q ss_conf             4678999999999999974399705654255889999995065657---456999999999999998636
Q gi|254780346|r   82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHL---DRGGCAARSALAMIELKKSLS  148 (149)
Q Consensus        82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~---nkG~eaa~Aal~mi~l~~~l~  148 (149)
                      ||||||++|++|||++++++++||+||||||+|++||++|++++.+   |||.|||+||++|++++++|+
T Consensus        78 H~e~I~~~v~~gl~~v~l~~~~Pv~~gVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~mi~~~~~l~  147 (148)
T d1di0a_          78 DHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA  147 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCCEEEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             8889999999999999876199679996067989999987364424540219999999999999998716


No 7  
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=0  Score=316.67  Aligned_cols=137  Identities=26%  Similarity=0.403  Sum_probs=125.5

Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH-CCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             966587179998031289999999999999998-7995---555530014422699999986331137853566541200
Q gi|254780346|r    1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHS-RAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVM   76 (149)
Q Consensus         1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~-~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VI   76 (149)
                      |+-...||+||.|+||++|+++|++||.+.|.+ .++.   +++++|||+||||++++++++    +++|||+|+|||||
T Consensus         5 l~~~~~rI~IV~s~~n~~i~~~L~~ga~~~l~~~~~~~~~~i~v~~VPGa~EiP~~~~~~~~----~~~~D~iIalG~VI   80 (150)
T d1kz1a_           5 LKGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIA----RNTYDAVIGIGVLI   80 (150)
T ss_dssp             CCCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHH----HSCCSEEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCCCEEEEEEEEE
T ss_conf             78889889999741878999999999999999856998434279995777778999999873----24656178887776


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHH
Q ss_conf             06652467899999999999997439970565425588999999506565-745699999999999
Q gi|254780346|r   77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH-LDRGGCAARSALAMI  141 (149)
Q Consensus        77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~-~nkG~eaa~Aal~mi  141 (149)
                      ||||+|||+||++|++|||++|+++++||+||||||+|++||++|++.+. .|||.|||+||++|.
T Consensus        81 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n~~QA~~R~~~~~~~nkG~eaa~aal~ma  146 (150)
T d1kz1a_          81 KGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGGHNHGNDWGSAAVEMG  146 (150)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESSHHHHHHHBTCTTCCBHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             376258789999999999998553896379997887999999998278677766899999999999


No 8  
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=91.86  E-value=0.42  Score=25.07  Aligned_cols=64  Identities=16%  Similarity=0.083  Sum_probs=44.7

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             717999803128999999999999999879955555300144226-999999863311378535665412
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGV   74 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~   74 (149)
                      |.|++|.+.+....-..++.|..+.+.++|+....+...+..|-- ..++.+.     ...+||+|.++.
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~-----~~~vdgiIi~~~   65 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-----QKRVDGLLVMCS   65 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEEECS
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEECC
T ss_conf             98999957797789999999999999986999999968999899999999999-----669987863112


No 9  
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=88.32  E-value=0.83  Score=23.24  Aligned_cols=99  Identities=11%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH
Q ss_conf             71799980312899999999999999987995555530014422699999986331137853566541200066524678
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV   85 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~   85 (149)
                      .||++|.+..+......-++|+.+.+++++....... .+-+..+...+...+......++|++++.+          +.
T Consensus       119 ~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~----------~~  187 (271)
T d1jyea_         119 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER-EGDWSAMSGFQQTMQMLNEGIVPTAMLVAN----------DQ  187 (271)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE-ECCSSHHHHHHHHHHHHHTTCCCSEEEESS----------HH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCCCCHHHHHHHCCCCCCHHHCCC----------HH
T ss_conf             5433222344551577656788777664135421000-011111124420223331245652111232----------04


Q ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf             99999999999997439970565425588999
Q gi|254780346|r   86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQ  117 (149)
Q Consensus        86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~Q  117 (149)
                      ++..+.+.+.+..+  .+|=-..|++.++...
T Consensus       188 ~a~~~~~~l~~~g~--~vp~di~Ii~~d~~~~  217 (271)
T d1jyea_         188 MALGAMRAITESGL--RVGADISVVGYDDTED  217 (271)
T ss_dssp             HHHHHHHHHHHTTC--CBTTTBEEECSBCCGG
T ss_pred             HHHHHHHHHHHHHC--CCCCEEEEEEEECCHH
T ss_conf             44578786787505--6885578876524577


No 10 
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.75  E-value=0.46  Score=24.84  Aligned_cols=40  Identities=13%  Similarity=0.033  Sum_probs=33.0

Q ss_pred             CCCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf             587179998031289-9999999999999987995555530
Q gi|254780346|r    4 FIPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT   43 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V   43 (149)
                      |+|||+||.+.=+++ .+..|.+.+.+.|.+.|.+++.++.
T Consensus         1 m~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G~eV~~~DL   41 (273)
T d1d4aa_           1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDL   41 (273)
T ss_dssp             CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             98769999718998667999999999999878798999988


No 11 
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}
Probab=82.97  E-value=1.5  Score=21.61  Aligned_cols=66  Identities=9%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             71799980312899999999999999987995555530014422699999986331137853566541
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG   73 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG   73 (149)
                      .++++|..+.+.+.-..+.+|+.+.++++|+++..+..++-.....-.+.+-+  ..+.++||+|..+
T Consensus         2 ~~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~--~i~~~~DgIi~~~   67 (288)
T d1guda_           2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFED--LSNKNYKGIAFAP   67 (288)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHH--HHTSSEEEEEECC
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH--HHHCCCCEEEEEC
T ss_conf             57999969898889999999999999973997999965898999999999999--9966999899724


No 12 
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}
Probab=82.02  E-value=1.6  Score=21.52  Aligned_cols=63  Identities=11%  Similarity=0.215  Sum_probs=39.9

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             8717999803128999999999999999879955555-3001--4422699999986331137853566541
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG   73 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG   73 (149)
                      .+|++||.++.-..  ..+++..++.|++.|+++.++ .|++  .+|-   +....+. .+..++|.||++|
T Consensus        30 ~k~~Livt~~~~~~--~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~---v~~~~~~-~~~~~~D~IiaiG   95 (385)
T d1rrma_          30 YQKALIVTDKTLVQ--CGVVAKVTDKMDAAGLAWAIYDGVVPNPTITV---VKEGLGV-FQNSGADYLIAIG   95 (385)
T ss_dssp             CCEEEEECBHHHHH--TTHHHHHHHHHHHTTCEEEEECBCCSSCBHHH---HHHHHHH-HHHHTCSEEEEEE
T ss_pred             CCEEEEEECCCHHH--CCHHHHHHHHHHHCCCEEEEECCCCCCCCHHH---HHHHHHH-HHCCCCCEEEECC
T ss_conf             99799998965565--80899999999875985999868269979899---9988654-3035888898669


No 13 
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=79.19  E-value=2.1  Score=20.80  Aligned_cols=68  Identities=13%  Similarity=0.018  Sum_probs=44.8

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             58717999803128999999999999999879955555300144226-99999986331137853566541200
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVM   76 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VI   76 (149)
                      +.+-|++|.+......-..++.|+.+.+.+.|++...+...+.-|.- -.+..+     ...++||+|..++.-
T Consensus         2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~e~~~i~~~-----~~~~vdgii~~~~~~   70 (275)
T d2nzug1           2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNM-----LGKQVDGIIFMSGNV   70 (275)
T ss_dssp             CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-----HTTCCSEEEECCSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCEEECCCCCH
T ss_conf             388999997888798999999999999998699899997899979999999999-----840875032045200


No 14 
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=78.65  E-value=2.1  Score=20.70  Aligned_cols=68  Identities=18%  Similarity=0.105  Sum_probs=43.9

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf             58717999803128999999999999999879955555300144226999999863311378535665412
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGV   74 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~   74 (149)
                      ..+||++|........-..+..|+.+.++++|+++..+ .|+-.....-.+.+-+  ....++||+|....
T Consensus         2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~-~~~~~d~~~q~~~i~~--~i~~~~dgIIi~~~   69 (316)
T d1tjya_           2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD-GPTEPSVSGQVQLVNN--FVNQGYDAIIVSAV   69 (316)
T ss_dssp             CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC-CCSSCCHHHHHHHHHH--HHHTTCSEEEECCS
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHH--HHHCCCCEEEECCC
T ss_conf             78899999389999899999999999999819979999-7999999999999999--99659986641144


No 15 
>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}
Probab=76.52  E-value=0.44  Score=24.94  Aligned_cols=95  Identities=15%  Similarity=0.071  Sum_probs=58.5

Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf             6587179998031289999999999999998799555553-----00144226999999863311378535665412000
Q gi|254780346|r    3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR   77 (149)
Q Consensus         3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk   77 (149)
                      +..+||+|+.+.-.+   +.-+.+-.+.|.+.|+.+..+.     |.|..-.+.....-+. ...+..||+++.-|    
T Consensus         1 i~grkVaiLv~dg~~---~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~-~~~~~~yDaliiPG----   72 (156)
T d1p80a1           1 VKGRVVAILLNDEVR---SADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFA-GAPSLTVDAVIVPC----   72 (156)
T ss_dssp             CTTCEEEEECCTTCC---HHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETT-TSCGGGCSEEEECC----
T ss_pred             CCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEC-CCCCCCCCEEEEEC----
T ss_conf             997689999679988---8999999999997899899975244544432203786545504-57722177899608----


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             665246789999999999999743997056
Q gi|254780346|r   78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                      |.  .-++-.+.-...+.+=+.++++||+.
T Consensus        73 G~--~~~l~~~~~~~~~i~e~~~~~K~I~a  100 (156)
T d1p80a1          73 GN--IADIADNGDANYYLMEAYKHLKPIAL  100 (156)
T ss_dssp             SC--THHHHTCHHHHHHHHHHHHTTCCEEE
T ss_pred             CC--HHHHHCCHHHHHHHHHHHHCCCEEEE
T ss_conf             75--67775415899999999986996999


No 16 
>d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=76.10  E-value=2.1  Score=20.81  Aligned_cols=40  Identities=10%  Similarity=0.056  Sum_probs=32.8

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf             87179998031289999999999999998799555553001
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPG   45 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG   45 (149)
                      +|||+||..+.|- -|..|.+.+.+.+.+.|++.+.+.+..
T Consensus         1 ~~Kvliiy~S~~G-nT~~la~~i~~g~~~~g~e~~~~~~~~   40 (196)
T d2a5la1           1 SPYILVLYYSRHG-ATAEMARQIARGVEQGGFEARVRTVPA   40 (196)
T ss_dssp             CCEEEEEECCSSS-HHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred             CCEEEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             9869999938980-899999999999863697799985355


No 17 
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=74.69  E-value=2.8  Score=20.02  Aligned_cols=32  Identities=3%  Similarity=-0.180  Sum_probs=18.3

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             17999803128999999999999999879955
Q gi|254780346|r    7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQW   38 (149)
Q Consensus         7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~   38 (149)
                      ||++|........-..+++|+.+..++.|++.
T Consensus         3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~   34 (305)
T d8abpa_           3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV   34 (305)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             99999699888899999999999999739989


No 18 
>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=74.55  E-value=2.3  Score=20.48  Aligned_cols=99  Identities=9%  Similarity=0.035  Sum_probs=57.8

Q ss_pred             CCEEEEEEECHHHHH-HH--------HHHHHHHHHHHHCCCCEEEEEHHH-------H-----HHHHHHHHH--------
Q ss_conf             871799980312899-99--------999999999998799555553001-------4-----422699999--------
Q gi|254780346|r    5 IPHVLIIEARFYENL-SA--------MLFEGCVNVLHSRAVQWSSIVTPG-------V-----LEIPAAVSM--------   55 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i-~~--------~ll~ga~~~l~~~~~~~~~i~VPG-------a-----~EiP~a~~~--------   55 (149)
                      -|||+||.|++++.. .+        .=+-.....|.+.|++++...--|       +     ++-+....+        
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             96499997577534688887473369999999999997798599988999888886543201146277788765008888


Q ss_pred             -HHHH-H----HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             -9863-3----11378535665412000665246789999999999999743997056
Q gi|254780346|r   56 -VMNA-K----TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        56 -~~~~-~----~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                       .++. .    ....+||+++.-|--    -.=+++-.+.....|.+-..+.+.||+-
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~----g~~~dl~~~~~l~~li~~~~~~gk~vaA  135 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGH----GTLFDYPKAKDLQDIASEIYANGGVVAA  135 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCST----THHHHGGGCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCHHHCCHHHCCEEEEECCC----CCHHCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             87743467656898579899980776----4400005666789999999866985898


No 19 
>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}
Probab=74.19  E-value=2.8  Score=19.95  Aligned_cols=99  Identities=12%  Similarity=0.098  Sum_probs=55.4

Q ss_pred             CCCEEEEEEECHHHHHHHH--------HHHHHHHHHHHCCCCEEEEEHHH--------HHHH----HHHHHHHHHH----
Q ss_conf             5871799980312899999--------99999999998799555553001--------4422----6999999863----
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAM--------LFEGCVNVLHSRAVQWSSIVTPG--------VLEI----PAAVSMVMNA----   59 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~--------ll~ga~~~l~~~~~~~~~i~VPG--------a~Ei----P~a~~~~~~~----   59 (149)
                      |.+||+||.|++.. +.+.        =+-...+.|.+.|++++.....|        .++-    -......++.    
T Consensus         1 M~KkvLiv~s~~~~-~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l   79 (221)
T d1u9ca_           1 MSKRVLMVVTNHTT-ITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL   79 (221)
T ss_dssp             CCCEEEEEECCCCE-EETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEEC
T ss_pred             CCCEEEEEECCCHH-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf             99669999668012-16887553039999999999998899799996489852013675520000257777786077885


Q ss_pred             -HHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             -311378535665412000665246789999999999999743997056
Q gi|254780346|r   60 -KTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        60 -~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                       .....+||+++.-|--    -.-+++-.+.....+.+-..+.+.||+-
T Consensus        80 ~~v~~~dYd~v~iPGG~----g~~~~l~~~~~l~~li~~~~~~~k~iaA  124 (221)
T d1u9ca_          80 SKDDAHGFDAIFLPGGH----GTMFDFPDNETLQYVLQQFAEDGRIIAA  124 (221)
T ss_dssp             CGGGGSSCSEEEECCCT----THHHHSTTCHHHHHHHHHHHHTTCEEEE
T ss_pred             HHCCHHHCCEEEECCCC----CHHHCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             67898678889927987----2665240268999999998753582124


No 20 
>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.93  E-value=1.7  Score=21.36  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=51.4

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC
Q ss_conf             871799980312899999999999999987995555530------01442269999998633113785356654120006
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT------PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRG   78 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V------PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkG   78 (149)
                      +|||+|+...-.+++-   +-...+.|.+.|++++.+..      .++.-++......+.......+||+++.-|    |
T Consensus         1 sKkvlvll~~Gfe~~E---~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipG----G   73 (186)
T d1p5fa_           1 SKRALVILAKGAEEME---TVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPG----G   73 (186)
T ss_dssp             CCEEEEEECTTCCHHH---HHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECC----C
T ss_pred             CCEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCCCCCHHCCCCCCCCCEEEEEC----C
T ss_conf             9689999289978999---99999999978898999982699536658996046750021167754646899816----7


Q ss_pred             CCCHHH-HHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             652467-89999999999999743997056
Q gi|254780346|r   79 KTAHCD-VIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        79 eT~H~e-~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                      . ...+ +--+.-...+.+-..+.+.||+-
T Consensus        74 ~-~~~~~l~~~~~l~~~lr~~~~~~k~i~a  102 (186)
T d1p5fa_          74 N-LGAQNLSESAAVKEILKEQENRKGLIAA  102 (186)
T ss_dssp             H-HHHHHHHHCHHHHHHHHHHHHTTCEEEE
T ss_pred             C-CCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             5-5301001249999999875304651330


No 21 
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=71.00  E-value=3.4  Score=19.49  Aligned_cols=67  Identities=4%  Similarity=0.018  Sum_probs=42.4

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             8717999803128999999999999999879955555300--14422699999986331137853566541200066524
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP--GVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP--Ga~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      +.|++||+.+-| .-|+.+.+...+.+.+.|++++.+.+.  ..-|+.   ..+       .+||+++ +|+=.-+...+
T Consensus         2 k~K~lIvY~S~~-GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~---~~~-------~~~d~ii-~Gspt~~g~~~   69 (149)
T d1ycga1           2 KAKAVIAYDTMW-LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVI---KEI-------LDARAVL-VGSPTINNDIL   69 (149)
T ss_dssp             CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHH---HHH-------HHCSEEE-EECCCBTTBCC
T ss_pred             CCEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH---HHH-------HHCCEEE-EEEECCCCCCC
T ss_conf             967999999998-08999999999998756982699971435568775---436-------4178499-99603467779


Q ss_pred             H
Q ss_conf             6
Q gi|254780346|r   83 C   83 (149)
Q Consensus        83 ~   83 (149)
                      -
T Consensus        70 ~   70 (149)
T d1ycga1          70 P   70 (149)
T ss_dssp             G
T ss_pred             H
T ss_conf             8


No 22 
>d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}
Probab=68.62  E-value=3.8  Score=19.17  Aligned_cols=38  Identities=3%  Similarity=-0.090  Sum_probs=31.5

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf             717999803128999999999999999879955555300
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP   44 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP   44 (149)
                      -||+||..+.+ .-|..|.+-+.+.+.+.|++.+.+.++
T Consensus         3 mkilivy~S~~-GnT~~la~~ia~g~~~~G~ev~~~~~~   40 (201)
T d1ydga_           3 VKLAIVFYSST-GTGYAMAQEAAEAGRAAGAEVRLLKVR   40 (201)
T ss_dssp             CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             57999996898-389999999999998659779999855


No 23 
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.55  E-value=4.4  Score=18.79  Aligned_cols=38  Identities=18%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             CEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf             7179998031289-9999999999999987995555530
Q gi|254780346|r    6 PHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT   43 (149)
Q Consensus         6 ~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V   43 (149)
                      .||+||.+.-+++ .+..|++.+.+.+++.|.+++.+..
T Consensus         3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL   41 (230)
T d2qwxa1           3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL   41 (230)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             879999827998568999999999999967997999986


No 24 
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=65.23  E-value=4.4  Score=18.76  Aligned_cols=63  Identities=17%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             71799980312899999999999999987995555530014422699999986331137853566541
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG   73 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG   73 (149)
                      +|++||..+.-.+..   .+...+.|.+.++.+....++|---.+ .++.+.+. .+..+.|.+|++|
T Consensus        31 ~r~lvvtd~~~~~~~---~~~l~~~L~~~~i~~~~~~~~~~p~~~-~v~~~~~~-~~~~~~D~IiavG   93 (366)
T d1jq5a_          31 NKTVVIADEIVWKIA---GHTIVNELKKGNIAAEEVVFSGEASRN-EVERIANI-ARKAEAAIVIGVG   93 (366)
T ss_dssp             SEEEEEECHHHHHHT---HHHHHHHHHTTTCEEEEEECCSSCBHH-HHHHHHHH-HHHTTCSEEEEEE
T ss_pred             CEEEEEECCCHHHHH---HHHHHHHHHHCCCEEEEEEECCCCCHH-HHHHHHHH-HHCCCCCEEEEEC
T ss_conf             948999898578999---999999998779969999818999999-99999998-6203886899816


No 25 
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}
Probab=64.70  E-value=4.4  Score=18.74  Aligned_cols=39  Identities=15%  Similarity=0.037  Sum_probs=25.5

Q ss_pred             CCEEEEEE-ECHHHHHHHHHHHHHHHHHHH-CCCCEEEEEHHH
Q ss_conf             87179998-031289999999999999998-799555553001
Q gi|254780346|r    5 IPHVLIIE-ARFYENLSAMLFEGCVNVLHS-RAVQWSSIVTPG   45 (149)
Q Consensus         5 ~~kI~IV~-s~~~~~i~~~ll~ga~~~l~~-~~~~~~~i~VPG   45 (149)
                      |+||+||+ |.+..  |+.|-+...+.+.+ .|++.+.+.++.
T Consensus         1 M~kilivy~S~~G~--T~~~A~~ia~g~~~~~g~~v~~~~~~~   41 (184)
T d2arka1           1 MGKVLVIYDTRTGN--TKKMAELVAEGARSLEGTEVRLKHVDE   41 (184)
T ss_dssp             CEEEEEEECCSSSH--HHHHHHHHHHHHHTSTTEEEEEEETTT
T ss_pred             CCEEEEEEECCCCH--HHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             98699999899838--999999999855334695699940234


No 26 
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}
Probab=63.89  E-value=4.7  Score=18.60  Aligned_cols=102  Identities=15%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             CCCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             587179998031-2899999999999999987995555530014422699999986331137853566541200066524
Q gi|254780346|r    4 FIPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         4 ~~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      |.+|+.+|.=.. -..-....+....+.|.+++.+++.+.+.+.-+.--.++..     ....||.+|+.|    ||-. 
T Consensus         1 ~~kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~d~ivv~G----GDGT-   70 (312)
T d2qv7a1           1 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERA-----MHENYDVLIAAG----GDGT-   70 (312)
T ss_dssp             CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHH-----TTTTCSEEEEEE----CHHH-
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH-----HHCCCCEEEEEC----CCCH-
T ss_conf             981699998768899757999999999999779928999828922799999988-----776998899986----7847-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC
Q ss_conf             678999999999999974399705654255889999995065
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP  124 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~  124 (149)
                          -+++.+++++    .+..+-.|||-..+.. .+.|+-+
T Consensus        71 ----v~~v~~~l~~----~~~~~~l~iiP~GTgN-~~ar~l~  103 (312)
T d2qv7a1          71 ----LNEVVNGIAE----KPNRPKLGVIPMGTVN-DFGRALH  103 (312)
T ss_dssp             ----HHHHHHHHTT----CSSCCEEEEEECSSCC-HHHHHTT
T ss_pred             ----HHHHHHHHHH----HCCCCCEEEEECCCCC-CCHHHCC
T ss_conf             ----9999999975----3556636875368887-5044224


No 27 
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=61.92  E-value=5.1  Score=18.38  Aligned_cols=38  Identities=5%  Similarity=0.020  Sum_probs=30.5

Q ss_pred             CCEEEEEE-ECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf             87179998-03128999999999999999879955555300
Q gi|254780346|r    5 IPHVLIIE-ARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP   44 (149)
Q Consensus         5 ~~kI~IV~-s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP   44 (149)
                      ++||+||+ |.|-.  |+.|.+...+.|.+.+++++.+.+.
T Consensus         2 ~~Ki~IiY~S~tGn--Te~~A~~Ia~~l~~~g~ev~~~~~~   40 (152)
T d1e5da1           2 TNKVVIFYDSMWHS--TEKMARVLAESFRDEGCTVKLMWCK   40 (152)
T ss_dssp             CSEEEEEECCSSSH--HHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred             CCEEEEEEECCCCH--HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             98699999998808--9999999999986579779983066


No 28 
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=60.07  E-value=3.7  Score=19.25  Aligned_cols=87  Identities=15%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH-------HHHHHHHHHHHHH
Q ss_conf             999999879955555--3001442269999998633113785356654120006652467-------8999999999999
Q gi|254780346|r   27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD-------VIAHAVTRGLVDL   97 (149)
Q Consensus        27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e-------~I~~~v~~gl~~l   97 (149)
                      ..+.|.+.|+..-.+  +.|+++|.-   +.+.+     ...|..+-.|.|..-|+-+.=       .||-.....+.+.
T Consensus        31 ~~~al~~~Gi~~iEitl~~~~a~~~I---~~l~~-----~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~  102 (212)
T d1vhca_          31 LADTLAKNGLSVAEITFRSEAAADAI---RLLRA-----NRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKL  102 (212)
T ss_dssp             HHHHHHHTTCCEEEEETTSTTHHHHH---HHHHH-----HCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----CCCCCEEEEEECCCHHHHHHHHHHCCCEEECCCCCHHHHHH
T ss_conf             99999987998899957881589999---99986-----28873476631465899999986178689778887999999


Q ss_pred             HHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf             974399705654255889999995
Q gi|254780346|r   98 SINGSLPIGNGIVVVDSEQQAFDR  121 (149)
Q Consensus        98 sl~~~~PI~~gILt~~n~~QA~~R  121 (149)
                      +.++++|.+=|+.|+....+|++.
T Consensus       103 a~~~~i~~iPGv~TpsEi~~A~~~  126 (212)
T d1vhca_         103 CQDLNFPITPGVNNPMAIEIALEM  126 (212)
T ss_dssp             HHHTTCCEECEECSHHHHHHHHHT
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf             985599716886888999999987


No 29 
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=58.20  E-value=4.3  Score=18.84  Aligned_cols=85  Identities=9%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHH---------HHHHHHH
Q ss_conf             999999879955555--30014422699999986331137853566541200066524678999---------9999999
Q gi|254780346|r   27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAH---------AVTRGLV   95 (149)
Q Consensus        27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~---------~v~~gl~   95 (149)
                      ..+.|.+.|+..-.|  +.|+++|.-   +.+.+     ...|..|-.|.|..-+.  .+-..+         .....+.
T Consensus        34 ~~~al~~~Gi~~iEitl~~p~a~~~i---~~l~~-----~~p~~~vGaGTV~~~~~--~~~a~~aGa~FivsP~~~~~v~  103 (216)
T d1mxsa_          34 LADALAAGGIRTLEVTLRSQHGLKAI---QVLRE-----QRPELCVGAGTVLDRSM--FAAVEAAGAQFVVTPGITEDIL  103 (216)
T ss_dssp             HHHHHHHTTCCEEEEESSSTHHHHHH---HHHHH-----HCTTSEEEEECCCSHHH--HHHHHHHTCSSEECSSCCHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----HCCCCCEEEEEEECHHH--HHHHHHCCCCEEECCCCCHHHH
T ss_conf             99999987998899967980699999---99998-----48975231100120888--9999867998997899849999


Q ss_pred             HHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf             99974399705654255889999995
Q gi|254780346|r   96 DLSINGSLPIGNGIVVVDSEQQAFDR  121 (149)
Q Consensus        96 ~lsl~~~~PI~~gILt~~n~~QA~~R  121 (149)
                      +.+.+.++|.+=|++|+....+|++.
T Consensus       104 ~~a~~~~i~~iPGv~TpsEi~~A~~~  129 (216)
T d1mxsa_         104 EAGVDSEIPLLPGISTPSEIMMGYAL  129 (216)
T ss_dssp             HHHHHCSSCEECEECSHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf             99986599864884988999999987


No 30 
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=52.48  E-value=7.3  Score=17.40  Aligned_cols=116  Identities=11%  Similarity=0.114  Sum_probs=56.2

Q ss_pred             CEEEEEEECHHH-HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf             717999803128-9999999999999998799555553001442269999998633113785356654120006652467
Q gi|254780346|r    6 PHVLIIEARFYE-NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD   84 (149)
Q Consensus         6 ~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e   84 (149)
                      .||+++....+. ...+...+|..+.+++++........  .+...-+.+.+.+  ....++||++|.          .|
T Consensus       116 ~~i~~i~~~~~~~~~~~~r~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~--~l~~~~~aii~~----------~d  181 (255)
T d1byka_         116 RNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALP--GLAMKQGYENVAK--VITPETTALLCA----------TD  181 (255)
T ss_dssp             CCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECC--CSCHHHHHHHSGG--GCCTTCCEEEES----------SH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHH--HHCCCCCEEECC----------CH
T ss_conf             543235777445507777766799999973998620137--7877888899999--707765443034----------43


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHH
Q ss_conf             8999999999999974399705654255889999995065-------65745699999999999
Q gi|254780346|r   85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMI  141 (149)
Q Consensus        85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi  141 (149)
                      .++-.+.+.+.+..+  +.|   .|++.++.+.+ +.+.+       ....-|+.+++.+++.+
T Consensus       182 ~~A~g~~~~l~~~g~--~d~---~ii~~d~~~~~-~~~~p~ltti~~~~~~~g~~a~~~L~~~i  239 (255)
T d1byka_         182 TLALGASKYLQEQRI--DTL---QLASVGNTPLM-KFLHPEIVTVDPGYAEAGRQAACQLIAQV  239 (255)
T ss_dssp             HHHHHHHHHHHHTTC--CSC---EEEEECCCHHH-HHHCTTSEEEBCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--CCC---CEEEECCHHHH-HHCCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf             657569999998486--644---41344874899-83489956998599999999999999997


No 31 
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}
Probab=50.70  E-value=7.8  Score=17.23  Aligned_cols=62  Identities=15%  Similarity=0.342  Sum_probs=35.3

Q ss_pred             CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             8717999803--1289999999999999998799555553-001--4422699999986331137853566541
Q gi|254780346|r    5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG   73 (149)
Q Consensus         5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG   73 (149)
                      .+|++||.++  |..   ....+...+.|.+.++++..+. +.+  .+|--.   ...+. .+..++|.+|++|
T Consensus        34 ~~rvliVt~~~~~~~---~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~---~~~~~-~~~~~~D~IIavG  100 (398)
T d1vlja_          34 IRKVLFLYGGGSIKK---NGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVH---EAVEV-AKKEKVEAVLGVG  100 (398)
T ss_dssp             CCEEEEEECSSHHHH---SSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHH---HHHHH-HHHTTCSEEEEEE
T ss_pred             CCEEEEEECCCHHHH---HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH---HHHHH-CCCCCCCEEEECC
T ss_conf             984899989747877---3199999999986599199986715998989999---87641-1456676688448


No 32 
>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}
Probab=49.58  E-value=4.2  Score=18.89  Aligned_cols=97  Identities=14%  Similarity=0.093  Sum_probs=53.0

Q ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf             6587179998031289999999999999998799555553-----00144226999999863311378535665412000
Q gi|254780346|r    3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR   77 (149)
Q Consensus         3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk   77 (149)
                      +..+||+|+.+.=.+   ..-+.+..+.|.+.|++++.+.     |.++.-.+......+. .....+||+++..|..  
T Consensus         1 i~~rkI~ilv~dG~~---~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~-~~~~~~~dalivpgg~--   74 (184)
T d1sy7a1           1 IKSRRVAIIIADGYD---NVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLE-GFRSTMVDAIFIPGGA--   74 (184)
T ss_dssp             CTTCEEEEECCTTBC---HHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETT-TCCGGGSSEEEECCCH--
T ss_pred             CCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECC--
T ss_conf             996589999559975---9999999999997899899998117733432333345432112-3445564079996113--


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             665246789999999999999743997056
Q gi|254780346|r   78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                        ......-.+.....+.+-..++++||+-
T Consensus        75 --~~~~~~~~~~~~~~~l~~~~~~~k~i~a  102 (184)
T d1sy7a1          75 --KAAETLSKNGRALHWIREAFGHLKAIGA  102 (184)
T ss_dssp             --HHHHHHHTCHHHHHHHHHHHHTTCEEEE
T ss_pred             --CCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             --5321112221004899999851893687


No 33 
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=48.04  E-value=4.3  Score=18.83  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             HHHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH-------HHHHHHHHHHHH
Q ss_conf             9999999879955555--3001442269999998633113785356654120006652467-------899999999999
Q gi|254780346|r   26 GCVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD-------VIAHAVTRGLVD   96 (149)
Q Consensus        26 ga~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e-------~I~~~v~~gl~~   96 (149)
                      ...+.|.+.|+..-.|  +.|+++|.-   +.+.+     .-.|..+-.|.|..-|+-+-=       .||-.....+.+
T Consensus        31 ~~~~al~~~Gi~~iEitl~tp~a~~~I---~~l~~-----~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~  102 (213)
T d1wbha1          31 PMAKALVAGGVRVLNVTLRTECAVDAI---RAIAK-----EVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK  102 (213)
T ss_dssp             HHHHHHHHTTCCEEEEESCSTTHHHHH---HHHHH-----HCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----HCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf             999999987998899937982599999---99999-----7898715223046389999999779929978989889999


Q ss_pred             HHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf             9974399705654255889999995
Q gi|254780346|r   97 LSINGSLPIGNGIVVVDSEQQAFDR  121 (149)
Q Consensus        97 lsl~~~~PI~~gILt~~n~~QA~~R  121 (149)
                      .+.++++|.+=|+.|+....+|++.
T Consensus       103 ~a~~~~i~~iPGv~TpsEi~~A~~~  127 (213)
T d1wbha1         103 AATEGTIPLIPGISTVSELMLGMDY  127 (213)
T ss_dssp             HHHHSSSCEEEEESSHHHHHHHHHT
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHC
T ss_conf             9985598755882877999999977


No 34 
>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}
Probab=47.93  E-value=4.3  Score=18.84  Aligned_cols=94  Identities=10%  Similarity=0.158  Sum_probs=53.7

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHH-HHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf             8717999803128999999999999999879955555300------144-226999999863311378535665412000
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVL-EIPAAVSMVMNAKTRSVTYDGIIVLGVVMR   77 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~-EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk   77 (149)
                      +|||+|+..+-+++.   =+-+..+.|.+.|++++.+...      |.. .++......+.. ....+||+++.-|-   
T Consensus         1 ~KkIail~~dgf~~~---E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~-~~~~~yDalivpGG---   73 (170)
T d1oi4a1           1 SKKIAVLITDEFEDS---EFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDE-VTPAEFDALLLPGG---   73 (170)
T ss_dssp             CCEEEEECCTTBCTH---HHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGG-CCGGGCSEEEECCB---
T ss_pred             CCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCEEEECCCCHHH-CCHHHCEEEEECCC---
T ss_conf             988999947983799---99999999997899899624789944665036717955871799-89515629997240---


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             665246789999999999999743997056
Q gi|254780346|r   78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                       .-..+ +..++-...+.+-..+.+.||+-
T Consensus        74 -~~~~~-l~~~~~~~~~i~~~~~~~k~i~a  101 (170)
T d1oi4a1          74 -HSPDY-LRGDNRFVTFTRDFVNSGKPVFA  101 (170)
T ss_dssp             -THHHH-HTTSHHHHHHHHHHHHTTCCEEE
T ss_pred             -HHHHH-HCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             -46656-42483789999988631781452


No 35 
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}
Probab=45.69  E-value=9.3  Score=16.74  Aligned_cols=34  Identities=3%  Similarity=-0.016  Sum_probs=20.0

Q ss_pred             EEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             179998031-2899999999999999987995555
Q gi|254780346|r    7 HVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSS   40 (149)
Q Consensus         7 kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~   40 (149)
                      +|+++.... +++.-..++.|..+.+.+.|..+..
T Consensus        42 ~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i   76 (338)
T d1jx6a_          42 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQL   76 (338)
T ss_dssp             EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             89999899987789999999999999975995799


No 36 
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=45.11  E-value=4.6  Score=18.64  Aligned_cols=87  Identities=9%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             HHHHHHHHCCCCEEE--EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHH---------HHHHHH
Q ss_conf             999999987995555--530014422699999986331137853566541200066524678999---------999999
Q gi|254780346|r   26 GCVNVLHSRAVQWSS--IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAH---------AVTRGL   94 (149)
Q Consensus        26 ga~~~l~~~~~~~~~--i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~---------~v~~gl   94 (149)
                      ...+.|.+.|+..-.  .+.|+++|.-   +.+.+    ...++..|-.|.|..-++-  +...+         .....+
T Consensus        25 ~~~~al~~~Gi~~iEitlr~p~a~~~i---~~l~~----~~~~~~~vGaGTV~~~~~~--~~a~~aGa~fivsP~~~~~v   95 (202)
T d1wa3a1          25 EKALAVFEGGVHLIEITFTVPDADTVI---KELSF----LKEKGAIIGAGTVTSVEQC--RKAVESGAEFIVSPHLDEEI   95 (202)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTHHHHH---HHTHH----HHHTTCEEEEESCCSHHHH--HHHHHHTCSEEECSSCCHHH
T ss_pred             HHHHHHHHCCCCEEEEECCCCCHHHHH---HHHHH----HCCCCCEEEECCCCCHHHH--HHHHHHCCCEEECCCCCHHH
T ss_conf             999999986998899955896289999---99998----5089848985142337899--99986056477478773999


Q ss_pred             HHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf             999974399705654255889999995
Q gi|254780346|r   95 VDLSINGSLPIGNGIVVVDSEQQAFDR  121 (149)
Q Consensus        95 ~~lsl~~~~PI~~gILt~~n~~QA~~R  121 (149)
                      .+.+.++++|.+-|+.|+....+|++.
T Consensus        96 ~~~~~~~~i~~iPGv~TpsEi~~A~~~  122 (202)
T d1wa3a1          96 SQFCKEKGVFYMPGVMTPTELVKAMKL  122 (202)
T ss_dssp             HHHHHHHTCEEECEECSHHHHHHHHHT
T ss_pred             HHHHHHCCCCEECCCCCHHHHHHHHHC
T ss_conf             999986599561781868899999977


No 37 
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=45.03  E-value=9.6  Score=16.68  Aligned_cols=35  Identities=6%  Similarity=0.066  Sum_probs=19.8

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             71799980312899999999999999987995555
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS   40 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~   40 (149)
                      +-|++|........-..+++|+.+.++++|++...
T Consensus         2 ~tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~i   36 (271)
T d2dria_           2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV   36 (271)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             88999938898989999999999999974998999


No 38 
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase  alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=40.81  E-value=11  Score=16.28  Aligned_cols=95  Identities=16%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH---CCCCCC
Q ss_conf             99999863311378535665412000665246789999999999999743997056542558899999950---656574
Q gi|254780346|r   52 AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV---SPSHLD  128 (149)
Q Consensus        52 a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~---~~~~~n  128 (149)
                      .....++.-.....+|+++++...-........-.+......+.+.  ...+|+....+.-...+++.++.   +.-.-+
T Consensus        65 ~~~~~l~~~~~d~~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f~  142 (163)
T d2csua3          65 DYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEV--NNEKPVLAMFMAGYVSEKAKELLEKNGIPTYE  142 (163)
T ss_dssp             HHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHH--CCCCCEEEEEECTTTTHHHHHHHHTTTCCEES
T ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf             9999999997598768798861257766555899999999999983--69972799989998769999999988998679


Q ss_pred             CHHHHHHHHHHHHHHHHHHC
Q ss_conf             56999999999999998636
Q gi|254780346|r  129 RGGCAARSALAMIELKKSLS  148 (149)
Q Consensus       129 kG~eaa~Aal~mi~l~~~l~  148 (149)
                      --.+|++|.-.+.+..|+.+
T Consensus       143 ~pe~a~~Al~~l~~~~r~~~  162 (163)
T d2csua3         143 RPEDVASAAYALVEQAKNVG  162 (163)
T ss_dssp             SHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999986679


No 39 
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]}
Probab=40.62  E-value=11  Score=16.26  Aligned_cols=80  Identities=13%  Similarity=0.054  Sum_probs=44.2

Q ss_pred             CCCEEEEEEEC---HHHHHHHHHHHHHHHHHHHCCCCEEE-E--EHHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf             58717999803---12899999999999999987995555-5--30014422-699999986331137853566541200
Q gi|254780346|r    4 FIPHVLIIEAR---FYENLSAMLFEGCVNVLHSRAVQWSS-I--VTPGVLEI-PAAVSMVMNAKTRSVTYDGIIVLGVVM   76 (149)
Q Consensus         4 ~~~kI~IV~s~---~~~~i~~~ll~ga~~~l~~~~~~~~~-i--~VPGa~Ei-P~a~~~~~~~~~~~~~~D~vIaLG~VI   76 (149)
                      .++|++||...   +...+.|.--.-..+.|.+.|++... .  .||.-.+. -.++..+    ..+..||-+++-|=+=
T Consensus         1 s~~rv~IitvsD~~~~G~~~D~~gp~l~~~L~~~G~~~~~v~~~ivpDd~~~I~~~l~~~----~~~~~~dlIittGGtG   76 (173)
T d2f7wa1           1 SKAKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKM----ADEQDCCLIVTTGGTG   76 (173)
T ss_dssp             CCEEEEEEEECHHHHHCCSCCHHHHHHHHHHHHHBCSCEEEEEEEECSCHHHHHHHHHHH----HHTSCEEEEEEESCCS
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----HHCCCCCEEEEECCCC
T ss_conf             997799999688876798667879999999998298754888997088589888876433----2214651899840345


Q ss_pred             CCCCCHHHHHHHHH
Q ss_conf             06652467899999
Q gi|254780346|r   77 RGKTAHCDVIAHAV   90 (149)
Q Consensus        77 kGeT~H~e~I~~~v   90 (149)
                      -+   |.|....++
T Consensus        77 ~~---~~D~T~ea~   87 (173)
T d2f7wa1          77 PA---KRDVTPEAT   87 (173)
T ss_dssp             SS---TTCCHHHHH
T ss_pred             CC---CCHHHHHHH
T ss_conf             55---422578887


No 40 
>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=38.26  E-value=7.9  Score=17.21  Aligned_cols=92  Identities=11%  Similarity=0.164  Sum_probs=50.2

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf             179998031289999999999999998799555553-----001442269999998633113785356654120006652
Q gi|254780346|r    7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA   81 (149)
Q Consensus         7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~   81 (149)
                      ||+|+.+.-.++.-   +.+..+.|.+.|++++.+.     |.+..-++......+.. ....+||+++.-|-    ...
T Consensus         2 Kv~il~~dgf~~~E---~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~-~~~~~~d~viipGg----~~~   73 (166)
T d1g2ia_           2 KVLFLTANEFEDVE---LIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDK-VNPEEFDALVLPGG----RAP   73 (166)
T ss_dssp             EEEEECCTTBCHHH---HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGG-CCGGGCSEEEECCB----SHH
T ss_pred             EEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEECCCCEEEECCCCEEECCCCHHH-CCCCCCCEEEEECC----CCH
T ss_conf             89999389868999---99999999988998999968882676429917752461899-58243518998033----413


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf             46789999999999999743997056
Q gi|254780346|r   82 HCDVIAHAVTRGLVDLSINGSLPIGN  107 (149)
Q Consensus        82 H~e~I~~~v~~gl~~lsl~~~~PI~~  107 (149)
                      +... .+.-...+.+-..+.+.||+-
T Consensus        74 ~~~~-~~~~~~~~l~~~~~~~k~i~a   98 (166)
T d1g2ia_          74 ERVR-LNEKAVSIARKMFSEGKPVAS   98 (166)
T ss_dssp             HHHT-TCHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHC-CCHHHHHHHHHHHHCCCEEEE
T ss_conf             3312-485778999998852874520


No 41 
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}
Probab=37.56  E-value=12  Score=15.96  Aligned_cols=63  Identities=11%  Similarity=0.207  Sum_probs=36.2

Q ss_pred             CCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             87179998031-289999999999999998799555553-001--4422699999986331137853566541
Q gi|254780346|r    5 IPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG   73 (149)
Q Consensus         5 ~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG   73 (149)
                      .+|++||.++- ++.  ...++...+.|++.++.+.++. +.+  .+|-   +....+ ..+..++|.+|++|
T Consensus        28 g~k~liV~~~~~~~~--~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~---v~~~~~-~~~~~~~D~IIavG   94 (359)
T d1o2da_          28 GKRALVVTGKSSSKK--NGSLDDLKKLLDETEISYEIFDEVEENPSFDN---VMKAVE-RYRNDSFDFVVGLG   94 (359)
T ss_dssp             CSEEEEEEESSGGGT--SSHHHHHHHHHHHTTCEEEEEEEECSSCBHHH---HHHHHH-HHTTSCCSEEEEEE
T ss_pred             CCEEEEEECCCHHHH--HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH---HHHHHH-HCCCCCCCEEEECC
T ss_conf             995899985868887--40999999999876984999757468979899---987642-00135775688516


No 42 
>d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]}
Probab=36.97  E-value=13  Score=15.91  Aligned_cols=38  Identities=13%  Similarity=0.092  Sum_probs=28.2

Q ss_pred             CCEEEEEEECHHH-HHHHHHHHHHHHHHHHCC-CCEEEEE
Q ss_conf             8717999803128-999999999999999879-9555553
Q gi|254780346|r    5 IPHVLIIEARFYE-NLSAMLFEGCVNVLHSRA-VQWSSIV   42 (149)
Q Consensus         5 ~~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~-~~~~~i~   42 (149)
                      |+||+|+.++-.+ ..+..|.+-+.+.|.+.+ ++++.+.
T Consensus         1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~~~e~~~~~   40 (232)
T d1sqsa_           1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRT   40 (232)
T ss_dssp             CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEEC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             9789999898999989999999999998754992899996


No 43 
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}
Probab=36.26  E-value=13  Score=15.84  Aligned_cols=39  Identities=10%  Similarity=0.105  Sum_probs=31.3

Q ss_pred             CCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH
Q ss_conf             87179998031289-9999999999999987995555530
Q gi|254780346|r    5 IPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT   43 (149)
Q Consensus         5 ~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V   43 (149)
                      .+||+++.++-.++ .+..|++-+.+.+.+.|++.+.+..
T Consensus        34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL   73 (233)
T d2fzva1          34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDP   73 (233)
T ss_dssp             CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             9869999598999887899999999971036738999746


No 44 
>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]}
Probab=35.73  E-value=13  Score=15.78  Aligned_cols=106  Identities=9%  Similarity=0.061  Sum_probs=56.0

Q ss_pred             CCEEEEEEECHHHH----HHHHHHH-----------HHHHHHHHC-CCCEEEEEHHHHHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf             87179998031289----9999999-----------999999987-99555553001442-2699999986331137853
Q gi|254780346|r    5 IPHVLIIEARFYEN----LSAMLFE-----------GCVNVLHSR-AVQWSSIVTPGVLE-IPAAVSMVMNAKTRSVTYD   67 (149)
Q Consensus         5 ~~kI~IV~s~~~~~----i~~~ll~-----------ga~~~l~~~-~~~~~~i~VPGa~E-iP~a~~~~~~~~~~~~~~D   67 (149)
                      |++|++|..+=-++    +...+.+           |.-+.|.++ |.++..+. ++.-+ -|-...++.     +++.|
T Consensus         1 ~~~ialiAhD~dK~~~~~~a~~~~~ll~gf~l~AT~GTa~~L~~~~g~~v~~~~-~~~~gg~~~i~d~I~-----~g~Id   74 (126)
T d1wo8a1           1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVL-SGPLGGDLQIGARVA-----EGKVL   74 (126)
T ss_dssp             CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECC-CTTTTHHHHHHHHHH-----TTCEE
T ss_pred             CCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCEEEEEE-ECCCCCCCCHHHHHH-----CCCCC
T ss_conf             955898613166299999999999986070799517799999982595689996-268899989899998-----29742


Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             5665412000665246789999999999999743997056542558899999950
Q gi|254780346|r   68 GIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV  122 (149)
Q Consensus        68 ~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~  122 (149)
                      .||-+-   ...+.+- .  ..-...|.++++++++|+...+=|++-.-.+++|-
T Consensus        75 lVIn~~---~~~~~~~-~--~~D~~~iRR~a~~~~IP~~Tn~~~A~a~v~al~~g  123 (126)
T d1wo8a1          75 AVVFLQ---DPLTAKP-H--EPDVQALMRVCNVHGVPLATNLVAAEALIAWIRKG  123 (126)
T ss_dssp             EEEEEC---CTTSCCT-T--HHHHHHHHHHHHHTTCCEECSHHHHHHHHHHHHHT
T ss_pred             EEEEEC---CCCCCCC-C--CCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             899815---8887775-5--10289999999973999896799999999999844


No 45 
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]}
Probab=35.28  E-value=14  Score=15.74  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-------------EE-----------HHHH---------HHHH
Q ss_conf             5871799980312899999999999999987995555-------------53-----------0014---------4226
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-------------IV-----------TPGV---------LEIP   50 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-------------i~-----------VPGa---------~EiP   50 (149)
                      |||||+|+.|-=-..-.+..+.+..+.+...+.++--             +.           .||+         |+-+
T Consensus         1 ~mkrIgIltsGG~~pg~Na~i~~~v~~~~~~~~~v~g~~~G~~Gl~~~~~~~l~~~~v~~~~~~gGs~lgt~R~~~~~~~   80 (320)
T d1pfka_           1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE   80 (320)
T ss_dssp             CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             98649998668886688999999999998789989999466888727985729999998898469985231478877665


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf             999999863311378535665412000665246789999999999999743997056542558899999950
Q gi|254780346|r   51 AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV  122 (149)
Q Consensus        51 ~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~  122 (149)
                      .-.+++++.. ...+.|+++.+|    |+         .+.++...++ ++.+|++---=|.+|.-.-.+.|
T Consensus        81 ~~~~~~~~~l-~~~~I~~li~iG----G~---------~s~~~a~~l~-~~~~~vigiPkTIDNDl~~td~s  137 (320)
T d1pfka_          81 NIRAVAIENL-KKRGIDALVVIG----GD---------GSYMGAMRLT-EMGFPCIGLPGTIDNDIKGTDYT  137 (320)
T ss_dssp             HHHHHHHHHH-HHTTCCEEEEEE----CH---------HHHHHHHHHH-HTTCCEEEEEBCTTCCCTTCSCC
T ss_pred             HHHHHHHHHH-HHCCCCEEEEEC----CC---------HHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCC
T ss_conf             5550388899-876998899967----96---------5899999987-51665222301431788886788


No 46 
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=33.83  E-value=14  Score=15.60  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             CCEEEEEEE--CHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             871799980--312899999999999999987995555530014422699999986331137853566541200066524
Q gi|254780346|r    5 IPHVLIIEA--RFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         5 ~~kI~IV~s--~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      |.||+||--  .|...+        ...|.+.|++.+++  |  ++.+.         ....+|||+|..|-    .-..
T Consensus         1 m~ki~iiD~g~~~~~~i--------~r~l~~lg~~~~i~--~--~d~~~---------~~~~~~dgiIl~Gg----~~~~   55 (196)
T d2a9va1           1 MLKIYVVDNGGQWTHRE--------WRVLRELGVDTKIV--P--NDIDS---------SELDGLDGLVLSGG----APNI   55 (196)
T ss_dssp             CCBEEEEEESCCTTCHH--------HHHHHHTTCBCCEE--E--TTSCG---------GGGTTCSEEEEEEE----CSCG
T ss_pred             CCEEEEEECCCCHHHHH--------HHHHHHCCCEEEEE--E--CCCCH---------HHHHCCCCEEEECC----CCCC
T ss_conf             98899998987299999--------99999789869999--3--98998---------99726880799336----5311


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC
Q ss_conf             67899999999999997439970565425588999999506
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS  123 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~  123 (149)
                      ++-.  .....+.+...+.++|+. ||   =---|.+..+.
T Consensus        56 ~~~~--~~~~~l~~~~~~~~~Pil-GI---C~G~Qll~~~~   90 (196)
T d2a9va1          56 DEEL--DKLGSVGKYIDDHNYPIL-GI---CVGAQFIALHF   90 (196)
T ss_dssp             GGTG--GGHHHHHHHHHHCCSCEE-EE---THHHHHHHHHT
T ss_pred             CCCC--CHHHHHHHHHHHCCCEEE-EE---EHHHHHHHHCC
T ss_conf             1021--024557777752581589-76---00003332103


No 47 
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}
Probab=31.89  E-value=9.8  Score=16.60  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             9999999999999998799555553001442269999998633113785356654120
Q gi|254780346|r   18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV   75 (149)
Q Consensus        18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V   75 (149)
                      |++..|++-|.+.+.+.+.+.-.+..-.+.++|+          ..+.||.|++.+++
T Consensus        45 D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~fD~v~~~~~l   92 (234)
T d1xxla_          45 DATKEMVEVASSFAQEKGVENVRFQQGTAESLPF----------PDDSFDIITCRYAA   92 (234)
T ss_dssp             ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS----------CTTCEEEEEEESCG
T ss_pred             ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------CCCCCCEEEEECEE
T ss_conf             4871430233310000123322233332222345----------55454333210103


No 48 
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=31.10  E-value=16  Score=15.32  Aligned_cols=10  Identities=20%  Similarity=0.355  Sum_probs=3.5

Q ss_pred             HHHHHHHHHH
Q ss_conf             0144226999
Q gi|254780346|r   44 PGVLEIPAAV   53 (149)
Q Consensus        44 PGa~EiP~a~   53 (149)
                      =|+-.+|+.-
T Consensus       156 GG~sr~p~l~  165 (198)
T d1dkgd2         156 GGQTRMPMVQ  165 (198)
T ss_dssp             SGGGGSHHHH
T ss_pred             CCCCCCHHHH
T ss_conf             6764777999


No 49 
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=29.59  E-value=17  Score=15.16  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CEEEEEE---ECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             7179998---0312899999999999999987995555530014422699999986331137853566541200066524
Q gi|254780346|r    6 PHVLIIE---ARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         6 ~kI~IV~---s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      ||.++|.   |.-+.     -+..+.+.|.+.|+++++..+-..=+.--.++.+.     ...||.+++.|    ||-  
T Consensus         1 p~~l~i~N~~s~~~~-----~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~-----~~~~d~Ivv~G----GDG--   64 (295)
T d2bona1           1 PASLLILNGKSTDNL-----PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEAR-----KFGVATVIAGG----GDG--   64 (295)
T ss_dssp             CCEEEEECSSSTTCH-----HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHH-----HHTCSEEEEEE----SHH--
T ss_pred             CCEEEEECCCCCCCH-----HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH-----HCCCCEEEEEC----CCC--
T ss_conf             949999878877865-----79999999997899799998188345999999998-----66997899977----982--


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC
Q ss_conf             678999999999999974399705654255889999995065
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP  124 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~  124 (149)
                         --++|.+||++..-. ..| ..|||-..+.. .+.|+-+
T Consensus        65 ---Tv~ev~~gl~~~~~~-~~p-~lgilP~GTgN-~~Ar~lg  100 (295)
T d2bona1          65 ---TINEVSTALIQCEGD-DIP-ALGILPLGTAN-DFATSVG  100 (295)
T ss_dssp             ---HHHHHHHHHHHCCSS-CCC-EEEEEECSSSC-HHHHHTT
T ss_pred             ---HHHHHHHHHHHCCCC-CCC-EEEEEECCCCC-CHHHHCC
T ss_conf             ---798999878750678-896-59999778665-3087749


No 50 
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.36  E-value=14  Score=15.72  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             9999999999999998799555553001442269999998633113785356654120
Q gi|254780346|r   18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV   75 (149)
Q Consensus        18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V   75 (149)
                      |++..|++-|++.+.+.+...-.+..-.+.++|          ....+||.|++.+++
T Consensus        90 D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~----------~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          90 DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT----------PEPDSYDVIWIQWVI  137 (222)
T ss_dssp             ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC----------CCSSCEEEEEEESCG
T ss_pred             ECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCC
T ss_conf             067888410112321122222333221122222----------333323321123332


No 51 
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}
Probab=26.85  E-value=15  Score=15.47  Aligned_cols=20  Identities=10%  Similarity=0.182  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999987995
Q gi|254780346|r   18 NLSAMLFEGCVNVLHSRAVQ   37 (149)
Q Consensus        18 ~i~~~ll~ga~~~l~~~~~~   37 (149)
                      |++..|++.|++.+.+.+.+
T Consensus        44 D~s~~~i~~A~~~~~~~~~~   63 (231)
T d1vl5a_          44 DLTEDILKVARAFIEGNGHQ   63 (231)
T ss_dssp             ESCHHHHHHHHHHHHHTTCC
T ss_pred             ECCHHHHHHHHHCCCCCCCC
T ss_conf             89889986655023332222


No 52 
>d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.95  E-value=20  Score=14.64  Aligned_cols=38  Identities=18%  Similarity=0.120  Sum_probs=27.7

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf             717999803128999999999999999879955555300
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP   44 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP   44 (149)
                      ||+.|+.++-+-. ++.+-+...+.|.+.|++++.+.++
T Consensus         1 pkv~I~Y~S~tG~-te~~A~~i~~~l~~~g~~v~~~~~~   38 (147)
T d1f4pa_           1 PKALIVYGSTTGN-TEYTAETIARELADAGYEVDSRDAA   38 (147)
T ss_dssp             CEEEEEEECSSSH-HHHHHHHHHHHHHHHTCEEEEEEGG
T ss_pred             CCEEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             9699999998705-9999999999998779858998513


No 53 
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=24.91  E-value=20  Score=14.64  Aligned_cols=121  Identities=15%  Similarity=0.075  Sum_probs=70.4

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf             87179998031289999999999999998799555553001442269999998633113785356654120006652467
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD   84 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e   84 (149)
                      .|+++||..+--.   -...+.|.+.|+++|++++.. |-.+..-|--...+++.. ....++.+|+.-    |-.-|--
T Consensus         2 ~P~V~IimGS~SD---~~v~~~a~~~L~~~gI~~e~~-v~SAHR~p~~l~~~~~~~-e~~~~~viIa~A----G~aaaLp   72 (159)
T d1u11a_           2 APVVGIIMGSQSD---WETMRHADALLTELEIPHETL-IVSAHRTPDRLADYARTA-AERGLNVIIAGA----GGAAHLP   72 (159)
T ss_dssp             CCSEEEEESSGGG---HHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHT-TTTTCCEEEEEE----ESSCCHH
T ss_pred             CCEEEEEECCHHH---HHHHHHHHHHHHHHCCCEEEE-EEHHHHCHHHHHHHHHHH-HHCCCEEEEEEE----CCCCCCC
T ss_conf             5969999577755---999999999999909955998-746864868899999999-865974899871----5888776


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCC--HHH---HHHHHC------C--CCCCCHHHHHHHHHHHHHHH
Q ss_conf             899999999999997439970565425588--999---999506------5--65745699999999999999
Q gi|254780346|r   85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDS--EQQ---AFDRVS------P--SHLDRGGCAARSALAMIELK  144 (149)
Q Consensus        85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n--~~Q---A~~R~~------~--~~~nkG~eaa~Aal~mi~l~  144 (149)
                      =+          ++-.+..|++..=.-...  -..   +.-..-      .  -..+.|..||..|.+|+.+.
T Consensus        73 gv----------va~~t~~PVIgvP~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg~~~~~nAa~~A~~IL~~~  135 (159)
T d1u11a_          73 GM----------CAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALY  135 (159)
T ss_dssp             HH----------HHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGG
T ss_pred             CC----------EEEECCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             63----------3221350578852465666444447888657679996379843775177999999998269


No 54 
>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}
Probab=23.99  E-value=21  Score=14.53  Aligned_cols=94  Identities=16%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH----
Q ss_conf             1799980312899999999999999987995555530014422699999986331137853566541200066524----
Q gi|254780346|r    7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH----   82 (149)
Q Consensus         7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H----   82 (149)
                      ||+|+.-.=.++     ..-..+.|.+.|++++.+++.---.+|          ..-.+|||+|..|    |.-.-    
T Consensus         5 rvli~qh~~~e~-----~G~~~~~l~~~g~~~~~~~~~~~~~~p----------~~l~~~d~iii~G----gp~~~~d~~   65 (230)
T d1o1ya_           5 RVLAIRHVEIED-----LGMMEDIFREKNWSFDYLDTPKGEKLE----------RPLEEYSLVVLLG----GYMGAYEEE   65 (230)
T ss_dssp             EEEEECSSTTSS-----CTHHHHHHHHTTCEEEEECGGGTCCCS----------SCGGGCSEEEECC----CSCCTTCTT
T ss_pred             EEEEEECCCCCC-----CHHHHHHHHHCCCEEEEEECCCCCCCC----------CCHHHCCEEEECC----CCCCCCCCH
T ss_conf             899997999989-----379999999789979999789987687----------6643378899829----976556410


Q ss_pred             -HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC
Q ss_conf             -6789999999999999743997056542558899999950656
Q gi|254780346|r   83 -CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS  125 (149)
Q Consensus        83 -~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~  125 (149)
                       +..+..  ...+.+-.++.++|+. |   .==--|++.++-+.
T Consensus        66 ~~~~~~~--~~~~i~~~~~~~~Pil-G---IC~G~Qlla~alGg  103 (230)
T d1o1ya_          66 KYPFLKY--EFQLIEEILKKEIPFL-G---ICLGSQMLAKVLGA  103 (230)
T ss_dssp             TCTHHHH--HHHHHHHHHHHTCCEE-E---ETHHHHHHHHHTTC
T ss_pred             HHHHHHH--HHHHHHHHHHHCCEEE-E---EECCHHHHHHHHCC
T ss_conf             0455578--9999999997311078-7---60579999998443


No 55 
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Probab=23.72  E-value=22  Score=14.50  Aligned_cols=36  Identities=8%  Similarity=0.008  Sum_probs=18.7

Q ss_pred             CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             8717999803--12899999999999999987995555
Q gi|254780346|r    5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSS   40 (149)
Q Consensus         5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~   40 (149)
                      |+||+|+-|.  ++...-+.=+-.....|.+.|++++.
T Consensus         1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~   38 (217)
T d1vhqa_           1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVC   38 (217)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             98799995588887742098999999999988998999


No 56 
>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.37  E-value=23  Score=14.33  Aligned_cols=69  Identities=10%  Similarity=0.073  Sum_probs=42.4

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             871799980312899999999999999987995555530014--422699999986331137853566541200066524
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGV--LEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa--~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      +.||+||+.+.+ .-|+.+-+...+.|.+.|++.+.+.++..  .++......       -.+||+++.--.+. +...+
T Consensus         3 ~~kv~IiY~S~t-GnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-------l~~~d~iiigspt~-~~~~~   73 (148)
T d1vmea1           3 KGKVTVIYDSMY-GFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKD-------IPDSEALIFGVSTY-EAEIH   73 (148)
T ss_dssp             TTEEEEEEECSS-SHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHH-------STTCSEEEEEECEE-TTEEC
T ss_pred             CCEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH-------HHHCCEEEEEECCC-CCCCC
T ss_conf             888999999988-1899999999999986799699996454432105676644-------97788869993552-88159


No 57 
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=21.86  E-value=21  Score=14.58  Aligned_cols=29  Identities=7%  Similarity=0.189  Sum_probs=25.7

Q ss_pred             EEECHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             98031289999999999999998799555
Q gi|254780346|r   11 IEARFYENLSAMLFEGCVNVLHSRAVQWS   39 (149)
Q Consensus        11 V~s~~~~~i~~~ll~ga~~~l~~~~~~~~   39 (149)
                      +.|+|..+-++.++..-...|++++++.|
T Consensus         3 i~SKYs~~qvE~il~el~~vLeKh~Ap~D   31 (72)
T d2juza1           3 QHSKYSDAQLSAIVNDMIAVLEKHKAPVD   31 (72)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHTCCSH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             53202288899999999999986599840


No 58 
>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}
Probab=21.70  E-value=24  Score=14.25  Aligned_cols=86  Identities=10%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             8717999803--12899999999999999987995555530014422699999986331137853566541200066524
Q gi|254780346|r    5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      |.||+|+.=.  +++         ..+.|++.|++...++-|..  +              .++|++|--|    |..+.
T Consensus         1 m~~igv~~~~G~~~~---------~~~al~~~G~~~~~i~~~~~--l--------------~~~D~lIlPG----G~~~~   51 (195)
T d2nv0a1           1 MLTIGVLGLQGAVRE---------HIHAIEACGAAGLVVKRPEQ--L--------------NEVDGLILPG----GESTT   51 (195)
T ss_dssp             CCEEEEECSSSCCHH---------HHHHHHHTTCEEEEECSGGG--G--------------GGCSEEEECC----SCHHH
T ss_pred             CCEEEEEECCCHHHH---------HHHHHHHCCCCEEEECCHHH--H--------------HHCCEEEECC----CCCCH
T ss_conf             929999962882999---------99999987991999899899--8--------------3188799779----98447


Q ss_pred             HHHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC
Q ss_conf             67899999-999999997439970565425588999999506
Q gi|254780346|r   83 CDVIAHAV-TRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS  123 (149)
Q Consensus        83 ~e~I~~~v-~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~  123 (149)
                      ........ .....+-..+.++| +.||=   .--|.+.++.
T Consensus        52 ~~~~~~~~~~~~~I~~~~~~g~p-ilGIC---~G~Qll~~~~   89 (195)
T d2nv0a1          52 MRRLIDTYQFMEPLREFAAQGKP-MFGTC---AGLIILAKEI   89 (195)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-EEEET---HHHHHHSBCC
T ss_pred             HHHHHHHCHHCCHHHHHHHHCCE-EEECC---CCHHHHHHHH
T ss_conf             99974431001034433220212-44005---5679998660


No 59 
>d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=21.41  E-value=24  Score=14.21  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=20.0

Q ss_pred             HHHHHHHCCCCEEEEEHHHHHHHH
Q ss_conf             999999879955555300144226
Q gi|254780346|r   27 CVNVLHSRAVQWSSIVTPGVLEIP   50 (149)
Q Consensus        27 a~~~l~~~~~~~~~i~VPGa~EiP   50 (149)
                      +.+.|.+.|++++++..-||-|+.
T Consensus       112 t~~f~~~~gi~~~ii~l~GavE~A  135 (203)
T d1o63a_         112 TQRYCESKGWHCRIIPLKGSVELA  135 (203)
T ss_dssp             HHHHHHHHTCCEEEEECSSCTTHH
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             999998716731798602778788


No 60 
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.83  E-value=25  Score=14.14  Aligned_cols=78  Identities=13%  Similarity=0.088  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999987995555530014422699999986331137853566541200066524678999999999999
Q gi|254780346|r   18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDL   97 (149)
Q Consensus        18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~l   97 (149)
                      |+++.|++-|++.+.+.+.+++.+. -.+.++|           ..++||.+++++.++-     +-... .....|.++
T Consensus        70 D~s~~mi~~a~~~~~~~~~~i~~~~-~d~~~l~-----------~~~~fD~I~~~~~~~~-----~~~~~-~~~~~L~~~  131 (251)
T d1wzna1          70 DLHEEMLRVARRKAKERNLKIEFLQ-GDVLEIA-----------FKNEFDAVTMFFSTIM-----YFDEE-DLRKLFSKV  131 (251)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCCEEEE-SCGGGCC-----------CCSCEEEEEECSSGGG-----GSCHH-HHHHHHHHH
T ss_pred             EECCCCCCCCCCCCCCCCCCCHHEE-HHHHHCC-----------CCCCCCHHHHHHHHHH-----CCCHH-HHHHHHHHH
T ss_conf             6112221122222222233100000-0122014-----------5535446766422133-----07767-899999999


Q ss_pred             HHHCCCCCEEEEECCCC
Q ss_conf             97439970565425588
Q gi|254780346|r   98 SINGSLPIGNGIVVVDS  114 (149)
Q Consensus        98 sl~~~~PI~~gILt~~n  114 (149)
                      . +.-.|=|.-++...|
T Consensus       132 ~-~~LkpgG~lii~~~~  147 (251)
T d1wzna1         132 A-EALKPGGVFITDFPC  147 (251)
T ss_dssp             H-HHEEEEEEEEEEEEC
T ss_pred             H-HHCCCCCEEEEEECC
T ss_conf             9-975988199999666


No 61 
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}
Probab=20.03  E-value=26  Score=14.03  Aligned_cols=124  Identities=6%  Similarity=0.007  Sum_probs=60.6

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH-HHHHH--HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             717999803128999999999999999879955555300-14422--699999986331137853566541200066524
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP-GVLEI--PAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP-Ga~Ei--P~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      .+|+++.+.-...-...-.+|+.+.+.+++.......+. ..+.-  .......+.......++|++++          +
T Consensus       140 ~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------~  209 (305)
T d2fvya1         140 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA----------N  209 (305)
T ss_dssp             EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE----------S
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE----------C
T ss_conf             469999478766505777888887765048753320476311210566777777776504888449995----------4


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHHH
Q ss_conf             678999999999999974399705654255889999995065-------657456999999999999
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMIE  142 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi~  142 (149)
                      .|.++..+.+++.+...  ..|...|+-..+...++... ++       ....-|+.|++.++++++
T Consensus       210 ~d~~a~g~~~a~~~~g~--~~i~~vg~d~~~~~~~~i~~-g~~~~tv~q~~~~~G~~av~~l~~~l~  273 (305)
T d2fvya1         210 NDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKS-GALAGTVLNDANNQAKATFDLAKNLAD  273 (305)
T ss_dssp             SHHHHHHHHHHHHHTTC--TTSCEECSBCCHHHHHHHHH-TSSCBEEECCHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHEEC-CCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             61776789999998189--98857988078245543126-995279957999999999999999977


Done!