RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)



>gnl|CDD|144470 pfam00885, DMRL_synthase, 6,7-dimethyl-8-ribityllumazine synthase. 
           This family includes the beta chain of 6,7-dimethyl-8-
           ribityllumazine synthase EC:2.5.1.9, an enzyme involved
           in riboflavin biosynthesis. The family also includes a
           subfamily of distant archaebacterial proteins that may
           also have the same function.
          Length = 144

 Score =  123 bits (310), Expect = 3e-29
 Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 7/145 (4%)

Query: 6   PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTR 62
             + I+ ARF  +++  L EG ++ L    V    I     PG  E+P A   +     +
Sbjct: 4   LRIAIVVARFNADITDRLLEGALDALKRHGVSEEDIDVVRVPGAFELPLAAKKL----AK 59

Query: 63  SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
           S  YD ++ LG V+RG T H D +A  V+RGL+ +S+   +P+G G++  D+ +QA +R 
Sbjct: 60  SGRYDAVVALGAVIRGGTYHFDYVAQEVSRGLMQVSLETGVPVGFGVLTTDTFEQALERA 119

Query: 123 SPSHLDRGGCAARSALAMIELKKSL 147
                ++G  AA +AL M  L K L
Sbjct: 120 GGKAGNKGAEAALAALEMANLLKKL 144


>gnl|CDD|30403 COG0054, RibH, Riboflavin synthase beta-chain [Coenzyme
           metabolism].
          Length = 152

 Score =  101 bits (253), Expect = 9e-23
 Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 7/142 (4%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVL--HSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRS 63
            + I+ ARF ++++  L EG V+ L  H   V    +V  PG  EIP A   +     R+
Sbjct: 14  RIAIVVARFNDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLA----RT 69

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
             YD ++ LG V+RG+T H D +A+ V RGL+D+S+   +P+  G++  D+ +QA +R  
Sbjct: 70  GKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERAG 129

Query: 124 PSHLDRGGCAARSALAMIELKK 145
               ++G  AA +AL M  L K
Sbjct: 130 TKAGNKGAEAAEAALEMANLLK 151


>gnl|CDD|38453 KOG3243, KOG3243, KOG3243, 6,7-dimethyl-8-ribityllumazine synthase
           [Coenzyme transport and metabolism].
          Length = 158

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 8   VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV---TPGVLEIPAAVSMVMNAKTRSV 64
             I+ AR+ E +  +L +G +  +   +V+  +I     PG  E+P    +      +  
Sbjct: 20  FAIVHARWNEVVIKLLVKGAIETMKKYSVREENIEIEWVPGSFELP----VGAQNLGKRG 75

Query: 65  TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR 121
            +D +I +GV+++G T H + I+++   GL+  SIN  +P+  G++  + E+QA +R
Sbjct: 76  KFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDEEQALNR 132


>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
           (PDR1-15), ABC superfamily [Secondary metabolites
           biosynthesis, transport and catabolism].
          Length = 1391

 Score = 26.0 bits (57), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 72  LGVVMRGKTAHCDVIAHAVTRGLV--DLSINGSLPIGNGIVVVDSEQQAFDRVS 123
           +G    GKT   DV+A   T G +  D+ I+G  P          +Q+ F RVS
Sbjct: 823 MGESGAGKTTLLDVLAGRKTGGYIEGDILISG-FPK---------DQETFARVS 866


>gnl|CDD|38689 KOG3479, KOG3479, KOG3479, Mitochondrial import inner membrane
          translocase, subunit TIM9 [Intracellular trafficking,
          secretion, and vesicular transport].
          Length = 83

 Score = 25.7 bits (56), Expect = 5.8
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 14 RFYENLSAMLFEGCVNVLHSRAVQ 37
            Y  L+ + F  CV+   +R + 
Sbjct: 13 TLYNKLTELCFSDCVDDFTTRDLS 36


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,707,270
Number of extensions: 82829
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 9
Length of query: 149
Length of database: 6,263,737
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,426,972
Effective search space: 283326208
Effective search space used: 283326208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)