RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(149 letters)
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase
RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A
2o6h_A* (A:)
Length = 157
Score = 125 bits (315), Expect = 3e-30
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVT 65
H+LI+EARFY++L+ L +G L + + PG LEIP + A
Sbjct: 14 HLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTE 73
Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125
YDG + LG V+RG+T H D++++ R L DLS+ S+ IGNGI+ V++E+QA+
Sbjct: 74 YDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARRE 133
Query: 126 HLDRGGCAARSALAMIELKKSL 147
D+GG AAR+AL MI L+K
Sbjct: 134 DKDKGGFAARAALTMIGLRKKF 155
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI;
2.40A {Bacillus subtilis} (A:)
Length = 154
Score = 118 bits (298), Expect = 3e-28
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
+ I+ RF + +++ L G + L V + I PG EIP A + K
Sbjct: 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKK-- 71
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
YD II LG V+RG T H D + + +G+ + +P+ GIV ++ +QA +R
Sbjct: 72 --YDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAG 129
Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
++G A SA+ M L +S
Sbjct: 130 TKAGNKGVDCAVSAIEMANLNRSF 153
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme
stability, vitamin biosynthesis, transferase; 1.60A
{Aquifex aeolicus} (A:)
Length = 154
Score = 117 bits (296), Expect = 4e-28
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
I+ +RF L L EG ++ + + I PG EIP A + R
Sbjct: 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA----RK 69
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
D +I +GV++RG T H D IA V++GL +LS+ PI G++ D+ +QA +R
Sbjct: 70 EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAG 129
Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
H ++G AA SA+ M L KSL
Sbjct: 130 TKHGNKGWEAALSAIEMANLFKSL 153
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} (A:)
Length = 168
Score = 117 bits (295), Expect = 6e-28
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIP-AAVSMVMNAKTR 62
V II AR+ + L +G + + S V+ ++I+ PG E+P V
Sbjct: 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77
Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
D +I +GV+++G T H + I+ + T L++L +P+ G++ +E+QA R
Sbjct: 78 GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137
Query: 123 SPSH----LDRGGCAARSALAMIELKKSLS 148
+ G +A+ M +
Sbjct: 138 GIDEAHSMHNHGEDWGAAAVEMAVKFGKNA 167
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis; HET:
LMZ; 3.30A {Spinacia oleracea} (A:)
Length = 156
Score = 117 bits (294), Expect = 9e-28
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV--TPGVLEIPAAVSMVMNAKTRSV 64
I+ ARF E ++ L EG ++ +V V PG E+ + +S
Sbjct: 15 RFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALG----KSG 70
Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
Y I+ LG V++G T+H D + ++ + G++ +N +P G++ D+ QA +R
Sbjct: 71 KYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGG 130
Query: 125 SHLDRGGCAARSALAMIELKKSLSE 149
++G +A +A+ M L + +
Sbjct: 131 KAGNKGAESALTAIEMASLFEHHLK 155
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase,
riboflavin biosynthesis, inhibitor binding; HET: TP6;
1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A*
2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* (A:)
Length = 160
Score = 116 bits (293), Expect = 9e-28
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVT 65
+ I+ + ++ + L +G V + ++V G +EIP A+ +
Sbjct: 19 RLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVV------AQELARN 72
Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VS 123
+D ++ LGVV+RG+T H D + AVT+GL +S++ S PI NG++ ++E+QA DR +
Sbjct: 73 HDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLP 132
Query: 124 PSHLDRGGCAARSALAMIELKKSLSE 149
S D+G A +ALA + L
Sbjct: 133 TSAEDKGAQATVAALATALTLRELRA 158
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus}
(A:)
Length = 158
Score = 116 bits (292), Expect = 1e-27
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
+ I+AR++ ++ + V L ++ + PG EIP + R+
Sbjct: 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLA----RT 67
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
Y I+ V+ G D +A AV G++ + + +P+ + ++ ++ +
Sbjct: 68 GRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHD 127
Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148
H +G AA +AL ++ + ++
Sbjct: 128 FFHAHFKVKGVEAAHAALQIVSERSRIA 155
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti} (A:)
Length = 157
Score = 115 bits (290), Expect = 2e-27
Identities = 19/148 (12%), Positives = 59/148 (39%), Gaps = 10/148 (6%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
+ ++ AR++ ++ + ++ PG EIP + +
Sbjct: 13 RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLA----ET 68
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
Y ++ V+ G + +A AV G++++ ++ +P+ + ++ + + +
Sbjct: 69 GRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHR 128
Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148
+G AAR+ + ++ ++ ++
Sbjct: 129 FFFEHFTVKGKEAARACVEILAAREKIA 156
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin
biosynthesis, ligand binding, transferase; 2.00A
{Schizosaccharomyces pombe} (A:)
Length = 159
Score = 114 bits (287), Expect = 5e-27
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSR-AVQWSSIVT---PGVLEIPAAVSMVMNAKTR 62
+LI+ AR L +G V + + V+ +I PG E+P + +
Sbjct: 19 RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI----A 74
Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
TYD +I +GV+++G T H + I+ AV GL+ + ++ +P+ G++ V +E+QA R
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134
Query: 123 SPSH-LDRGGCAARSALAMIELKK 145
+ + G +A+ M
Sbjct: 135 GLNGGHNHGNDWGSAAVEMGLKAL 158
>1c41_A Lumazine synthase; riboflavin biosynthesis; HET: LMZ; 3.10A
{Magnaporthe grisea} (A:)
Length = 200
Score = 113 bits (285), Expect = 8e-27
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 37/180 (20%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVM------ 57
+ I+ AR+ E + L G L + V+ S+IV PG E+P AV +
Sbjct: 17 RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76
Query: 58 --------------------------NAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVT 91
+ + +D +I +GV+++G+T H + IA +V+
Sbjct: 77 TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136
Query: 92 RGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH--LDRGGCAARSALAMIELKKSLSE 149
GL+ + ++ +P+ G++ V ++ QA R + G +A+ M ++ +
Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVRRRDWAA 196
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET:
RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
(A:)
Length = 156
Score = 101 bits (254), Expect = 4e-23
Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 8/143 (5%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTY 66
V I++ F A + + L + PG+ ++P A ++
Sbjct: 4 KVGIVDTTFARVDMASIAIKKLKELSPNI-KIIRKTVPGIKDLPVACKKLL----EEEGC 58
Query: 67 DGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH 126
D ++ LG+ GK V AH + GL+ + + I V D + +
Sbjct: 59 DIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNKHIIEVFVHEDEAKDD-KELDWLA 115
Query: 127 LDRGGCAARSALAMIELKKSLSE 149
R A + ++ + L+
Sbjct: 116 KRRAEEHAENVYYLLFKPEYLTR 138
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} (A:105-281)
Length = 177
Score = 25.1 bits (54), Expect = 4.0
Identities = 11/61 (18%), Positives = 18/61 (29%)
Query: 53 VSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVV 112
+ + V DG ++ G DVI + ++ L G V
Sbjct: 113 IEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPV 172
Query: 113 D 113
D
Sbjct: 173 D 173
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,093,131
Number of extensions: 43747
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 15
Length of query: 149
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 68
Effective length of database: 2,217,844
Effective search space: 150813392
Effective search space used: 150813392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)