RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (149 letters) >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A Length = 168 Score = 122 bits (307), Expect = 4e-29 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVS-MVMNAKTR 62 V II AR+ + L +G + + S V+ ++I+ PG E+P V Sbjct: 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77 Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 D +I +GV+++G T H + I+ + T L++L +P+ G++ +E+QA R Sbjct: 78 GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137 Query: 123 SPSH----LDRGGCAARSALAMIELKK 145 + G +A+ M Sbjct: 138 GIDEAHSMHNHGEDWGAAAVEMAVKFG 164 >1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A* Length = 154 Score = 119 bits (301), Expect = 2e-28 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63 I+ +RF L L EG ++ + + I PG EIP A + R Sbjct: 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA----RK 69 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 D +I +GV++RG T H D IA V++GL +LS+ PI G++ D+ +QA +R Sbjct: 70 EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAG 129 Query: 124 PSHLDRGGCAARSALAMIELKKSL 147 H ++G AA SA+ M L KSL Sbjct: 130 TKHGNKGWEAALSAIEMANLFKSL 153 >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* Length = 157 Score = 113 bits (283), Expect = 2e-26 Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%) Query: 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVS-MVMNAKTRSV 64 PH+LI+EARFY++L+ L +G L + + PG LEIPA +S + A Sbjct: 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGT 72 Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 YDG + LG V+RG+T H D++++ R L DLS+ S+ IGNGI+ V++E+QA+ Sbjct: 73 EYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARR 132 Query: 125 SHLDRGGCAARSALAMIELKKSL 147 D+GG AAR+AL MI L+K Sbjct: 133 EDKDKGGFAARAALTMIGLRKKF 155 >1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A Length = 159 Score = 110 bits (277), Expect = 1e-25 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT----PGVLEIPAAVSMVMNAKTR 62 +LI+ AR L +G V + + + PG E+P + + Sbjct: 19 RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI----A 74 Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 TYD +I +GV+++G T H + I+ AV GL+ + ++ +P+ G++ V +E+QA R Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134 Query: 123 SPSH-LDRGGCAARSALAM 140 + + G +A+ M Sbjct: 135 GLNGGHNHGNDWGSAAVEM 153 >1c41_A Lumazine synthase; riboflavin biosynthesis; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1 Length = 200 Score = 102 bits (256), Expect = 2e-23 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 37/180 (20%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAK--- 60 + I+ AR+ E + L G L + V PG E+P AV + +A Sbjct: 17 RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76 Query: 61 -----------------------------TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVT 91 + + +D +I +GV+++G+T H + IA +V+ Sbjct: 77 TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136 Query: 92 RGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VSPSHLDRGGCAARSALAMIELKKSLSE 149 GL+ + ++ +P+ G++ V ++ QA R V + G +A+ M ++ + Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVRRRDWAA 196 >1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* Length = 154 Score = 102 bits (256), Expect = 3e-23 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAKTRS 63 + I+ RF + +++ L G + L V PG EIP A + + Sbjct: 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMA----ET 69 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 YD II LG V+RG T H D + + +G+ + +P+ GIV ++ +QA +R Sbjct: 70 KKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAG 129 Query: 124 PSHLDRGGCAARSALAMIELKKSL 147 ++G A SA+ M L +S Sbjct: 130 TKAGNKGVDCAVSAIEMANLNRSF 153 >2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} Length = 157 Score = 97.3 bits (242), Expect = 1e-21 Identities = 19/147 (12%), Positives = 57/147 (38%), Gaps = 10/147 (6%) Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAKTRSV 64 + ++ AR++ ++ + PG EIP + + Sbjct: 14 IAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLA----ETG 69 Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 Y ++ V+ G + +A AV G++++ ++ +P+ + ++ + + + Sbjct: 70 RYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRF 129 Query: 125 SH---LDRGGCAARSALAMIELKKSLS 148 +G AAR+ + ++ ++ ++ Sbjct: 130 FFEHFTVKGKEAARACVEILAAREKIA 156 >1c2y_A Protein (lumazine synthase); riboflavin biosynthesis; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 Length = 156 Score = 95.8 bits (238), Expect = 4e-21 Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 6/140 (4%) Query: 8 VLIIEARFYENLSAMLFEGCVNVL--HSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVT 65 I+ ARF E ++ L EG ++ +S + PG E+ + + Sbjct: 16 FAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGK---- 71 Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125 Y I+ LG V++G T+H D + ++ + G++ +N +P G++ D+ QA +R Sbjct: 72 YHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGK 131 Query: 126 HLDRGGCAARSALAMIELKK 145 ++G +A +A+ M L + Sbjct: 132 AGNKGAESALTAIEMASLFE 151 >1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A Length = 158 Score = 94.7 bits (235), Expect = 7e-21 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIPAAVSMVMNAKTRSV 64 + I+AR++ ++ + V L ++ + PG EIP + R+ Sbjct: 13 IAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLA----RTG 68 Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 Y I+ V+ G D +A AV G++ + + +P+ + ++ ++ + Sbjct: 69 RYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDF 128 Query: 125 SH---LDRGGCAARSALAMIELKKSLSE 149 H +G AA +AL ++ + ++ Sbjct: 129 FHAHFKVKGVEAAHAALQIVSERSRIAA 156 >2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* Length = 160 Score = 93.1 bits (231), Expect = 2e-20 Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 7/142 (4%) Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYD 67 + I+ + ++ + L +G V + ++V A+ + + A+ + +D Sbjct: 20 LAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRV-----LGAIEIPVVAQELARNHD 74 Query: 68 GIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VSPS 125 ++ LGVV+RG+T H D + AVT+GL +S++ S PI NG++ ++E+QA DR + S Sbjct: 75 AVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTS 134 Query: 126 HLDRGGCAARSALAMIELKKSL 147 D+G A +ALA + L Sbjct: 135 AEDKGAQATVAALATALTLREL 156 >2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* Length = 156 Score = 86.8 bits (215), Expect = 2e-18 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 12/144 (8%) Query: 8 VLIIEARFYENLSAMLFEGCVNVL--HSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVT 65 V I++ F + + L S ++ PG+ ++P A ++ Sbjct: 5 VGIVDTTFARV---DMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLL----EEEG 57 Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125 D ++ LG+ GK V AH + GL+ + + I V D E + + Sbjct: 58 CDIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNKHIIEVFVHED-EAKDDKELDWL 114 Query: 126 HLDRGGCAARSALAMIELKKSLSE 149 R A + ++ + L+ Sbjct: 115 AKRRAEEHAENVYYLLFKPEYLTR 138 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.075 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 11/38 (28%) Query: 115 EQQAFDRVSPS---HLDRGGCAARSALAMIELKKSLSE 149 E+QA ++ S + D +A ALA +K ++ E Sbjct: 18 EKQALKKLQASLKLYADD---SA-PALA---IKATM-E 47 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.1 bits (65), Expect = 0.46 Identities = 39/163 (23%), Positives = 54/163 (33%), Gaps = 56/163 (34%) Query: 14 RFYENLSAMLFEGCVN-------VL-----HSRAVQWSSIVTPGVLEI-----PAAVSMV 56 R EN SAM+FE V+ + HS + + S G+L PA M Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLME 1740 Query: 57 MNA----KTRSVT-------------YDGIIVLGVVM-----------RGKTAHCDVIAH 88 A K++ + Y + L VM RG T Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV----- 1795 Query: 89 AVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGG 131 AV R + S G + I G V Q+A V ++R G Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYV----VERVG 1834 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.135 0.389 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,240,683 Number of extensions: 51283 Number of successful extensions: 109 Number of sequences better than 10.0: 1 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 14 Length of query: 149 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 65 Effective length of database: 3,656,734 Effective search space: 237687710 Effective search space used: 237687710 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.1 bits)