BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 149

 Score =  303 bits (776), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAK 60
           MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAK
Sbjct: 1   MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAK 60

Query: 61  TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFD 120
           TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFD
Sbjct: 61  TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFD 120

Query: 121 RVSPSHLDRGGCAARSALAMIELKKSLSE 149
           RVSPSHLDRGGCAARSALAMIELKKSLSE
Sbjct: 121 RVSPSHLDRGGCAARSALAMIELKKSLSE 149


>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 438

 Score = 22.7 bits (47), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 74  VVMRGKTAHCDVI-AHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAF---DRV 122
           ++M    +  DV+ A  +   L+DL I G LPI + ++V  + ++A    DRV
Sbjct: 166 LLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIESMLMVTHNIEEAVLMCDRV 218


>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 398

 Score = 22.3 bits (46), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 7  HVLIIEARFYENLSAMLFEGCVNVLHSRAVQ 37
          H++ I  +    L A +  GC +++  R ++
Sbjct: 21 HIMYIRNQMQSALDAAVLSGCASIVSDRTIK 51


>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 21.9 bits (45), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 63  SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSING 101
            + +DGI  L ++  G ++ C   ++ +     ++ +NG
Sbjct: 272 KLAHDGIKSLAIITPGFSSDCLETSYEIAHEAKEIFVNG 310


>537021.9.peg.788_1 
          Length = 270

 Score = 21.9 bits (45), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 7/13 (53%), Positives = 12/13 (92%)

Query: 105 IGNGIVVVDSEQQ 117
           +GNG+VV+D +Q+
Sbjct: 248 LGNGVVVIDWQQR 260


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 21.9 bits (45), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 98  SINGSLPIGNGIVVVDSEQ 116
           SING  P+  G V+VD+++
Sbjct: 74  SINGLAPVVRGEVLVDTDK 92


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,493
Number of Sequences: 1233
Number of extensions: 3276
Number of successful extensions: 10
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 328,796
effective HSP length: 66
effective length of query: 83
effective length of database: 247,418
effective search space: 20535694
effective search space used: 20535694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 34 (17.7 bits)