Query         gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs    131 out of 2487
Neff          5.8 
Searched_HMMs 33803
Date          Wed Jun  1 12:27:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780347.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3ddy_A Lumazine protein, LUMP 100.0 8.8E-31 2.6E-35  200.2   9.6   93    1-99      1-94  (94)
  2 >3a35_A Lumazine protein, LUMP 100.0 5.7E-31 1.7E-35  201.4   6.3   94  102-195     3-96  (96)
  3 >3a35_A Lumazine protein, LUMP 100.0 2.4E-30 7.2E-35  197.7   8.7   93    1-99      1-94  (94)
  4 >3a35_A Lumazine protein, LUMP 100.0 1.1E-29 3.2E-34  193.9   9.3   91    1-96      3-94  (96)
  5 >3ddy_A Lumazine protein, LUMP 100.0 1.8E-29 5.2E-34  192.6   9.4   89    1-94      3-92  (92)
  6 >1i8d_A Riboflavin synthase; r  99.9 6.7E-28   2E-32  183.4   8.3  107   94-200     5-112 (128)
  7 >3ddy_A Lumazine protein, LUMP  99.9 1.3E-27   4E-32  181.6   7.3   86  102-187     3-88  (92)
  8 >3a35_A Lumazine protein, LUMP  99.9 6.3E-27 1.9E-31  177.7   5.2   89  102-191     1-89  (94)
  9 >3ddy_A Lumazine protein, LUMP  99.9 3.1E-26 9.2E-31  173.6   6.8   89  102-191     1-89  (94)
 10 >1i8d_A Riboflavin synthase; r  99.9 4.2E-25 1.2E-29  167.0  10.3   84    7-95      1-85  (85)
 11 >1kzl_A Riboflavin synthase; b  99.9 2.3E-25 6.7E-30  168.6   5.4   85    6-95      1-86  (87)
 12 >1kzl_A Riboflavin synthase; b  99.9   2E-24 5.8E-29  163.1   9.5   86  107-192     1-86  (87)
 13 >1i8d_A Riboflavin synthase; r  99.9 8.2E-25 2.4E-29  165.3   7.2   83  108-190     1-83  (85)
 14 >1kzl_A Riboflavin synthase; b  99.9 1.5E-21 4.3E-26  146.3   7.9   97   93-189     2-99  (99)
 15 >1i8d_A Riboflavin synthase; r  99.2 9.4E-11 2.8E-15   83.1   7.0   85    1-91      1-100 (128)
 16 >1kzl_A Riboflavin synthase; b  98.4 2.4E-06 7.2E-11   57.2   9.8   85    1-90      1-97  (99)
 17 >2wg5_A General control protei  62.0      12 0.00035   18.1   4.6   41   15-55     17-59  (73)
 18 >1xez_A Hemolysin, cytolysin;   54.8     1.5 4.3E-05   23.5  -1.6   42   85-133   190-231 (399)
 19 >3h43_A Proteasome-activating   45.1      23 0.00067   16.5   4.3   41   14-54     16-58  (68)
 20 >1ep3_B Dihydroorotate dehydro  44.3      23 0.00068   16.4   7.5   81    9-92      7-98  (103)
 21 >3dwl_G Actin-related protein   39.9      12 0.00034   18.2   1.1   17  186-202   103-119 (152)
 22 >1k8k_G P16, ARP2/3 complex 16  37.8      16 0.00049   17.3   1.6   18  186-203   102-119 (151)
 23 >2qdx_A Ferredoxin reductase;   33.8      34   0.001   15.4   4.6   77    9-90      5-92  (99)
 24 >2ilk_A Interleukin-10; cytoki  23.9      28 0.00083   15.9   0.9   16  186-201    29-44  (47)
 25 >3i4l_A A-type ATP synthase ca  23.4      53  0.0016   14.3   3.7   73   79-161    10-85  (88)
 26 >3gr4_A Pyruvate kinase isozym  22.7      54  0.0016   14.3   4.8   55   23-89     39-95  (100)
 27 >2cvc_A Cytochrome CC3, high-m  21.8      21 0.00061   16.7  -0.2   21   76-96      9-29  (58)

No 1  
>>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:1-94)
Probab=99.97  E-value=8.8e-31  Score=200.24  Aligned_cols=93  Identities=22%  Similarity=0.252  Sum_probs=88.0

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             9453371189999998769935999981755-112667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYN-TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~-~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      ||||||+++|+|.++++.++++++.+++|.. ++.+++|+|||||||||||+++.+     ++|.|+ +|||+++|||+.
T Consensus         1 MFtG~I~~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvcLTV~~v~~-----~~f~v~-ipeTl~~T~l~~   74 (94)
T 3ddy_A            1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILG-----DMVYFD-IDQALGTTTFDG   74 (94)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEET-----TEEEEE-ECTTTTTSSGGG
T ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECC-----CEEEEE-CHHHHHHCCHHH
T ss_conf             98824038999999997699389999917764342467878996879999999679-----879998-169730200601


Q ss_pred             CCCCCCCCCCCCCHHHHCCC
Q ss_conf             56566313354320000047
Q gi|254780347|r   80 WGIGTFINLERSVKLGDRLD   99 (204)
Q Consensus        80 l~~G~~VNLE~a~~~g~~lg   99 (204)
                      |++||+|||||||+++||+|
T Consensus        75 ~~~G~~VNlE~~l~~~~rlG   94 (94)
T 3ddy_A           75 LKEGDQVNLEIHPKFGEVVG   94 (94)
T ss_dssp             CCTTCEEEEECCC-------
T ss_pred             CCCCCEEEEECCCCCCCCCC
T ss_conf             74799985420666898608


No 2  
>>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:95-190)
Probab=99.97  E-value=5.7e-31  Score=201.36  Aligned_cols=94  Identities=16%  Similarity=0.222  Sum_probs=83.6

Q ss_pred             EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC
Q ss_conf             24540100110111002331379875134211210023571998234578774168549999844433013300248996
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD  181 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd  181 (204)
                      ++|||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|++++||||+++|||+.|++||
T Consensus         3 MftGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~g~SIavdGvcLTV~~~~~~~f~v~l~~eTl~~T~l~~~~~G~   82 (96)
T 3a35_A            3 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEKGS   82 (96)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEETTEEEEEEETTHHHHSGGGGCCTTC
T ss_pred             CEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEECCEEEEEECCHHHHHCCCCCCCCCC
T ss_conf             33567402304543101254215778605410001201573896256238876608899999570567511156689899


Q ss_pred             EEEEEHHHHHHHHH
Q ss_conf             74697135889999
Q gi|254780347|r  182 LINIEVDSMMRYIA  195 (204)
Q Consensus       182 ~VNiE~D~l~kyv~  195 (204)
                      +||||.|+++||+|
T Consensus        83 ~VNlE~~l~~~~~e   96 (96)
T 3a35_A           83 DVNVETLNVSNEWD   96 (96)
T ss_dssp             EEEEEECC------
T ss_pred             EEEECCCCCCCCCC
T ss_conf             99979900376789


No 3  
>>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:1-94)
Probab=99.96  E-value=2.4e-30  Score=197.67  Aligned_cols=93  Identities=25%  Similarity=0.330  Sum_probs=88.3

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             94533711899999987699359999817551-12667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      ||||||+++|+|.++++.++++++.+++|+.+ ..+.+|+|||||||||||+++.+     ++|.|+ +|||+++|||+.
T Consensus         1 MFtG~I~~~g~V~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavdGvsLTV~~~~~-----~~f~~~-ipeTl~~T~l~~   74 (94)
T 3a35_A            1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISG-----DVVYFD-IDQAINTTTFRE   74 (94)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEET-----TEEEEE-ESTTTTTSSGGG
T ss_pred             CCCEECCEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCC-----CHHHHH-HHHHHHHHHCCC
T ss_conf             96920280999999998899289999977166644557873897778648984363-----202134-566666420231


Q ss_pred             CCCCCCCCCCCCCHHHHCCC
Q ss_conf             56566313354320000047
Q gi|254780347|r   80 WGIGTFINLERSVKLGDRLD   99 (204)
Q Consensus        80 l~~G~~VNLE~a~~~g~~lg   99 (204)
                      |++|++|||||||++|||+|
T Consensus        75 ~~~G~~VNlE~~l~~~~rlg   94 (94)
T 3a35_A           75 LEVGNKVNLEVRPEFGSLLG   94 (94)
T ss_dssp             CCTTCEEEEECCCSSCCCCC
T ss_pred             CCCCCCCCCCCCCCCEEECC
T ss_conf             02366335134323301048


No 4  
>>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:95-190)
Probab=99.96  E-value=1.1e-29  Score=193.89  Aligned_cols=91  Identities=13%  Similarity=0.176  Sum_probs=86.7

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             94533711899999987699359999817551-12667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      ||||||+++|+|.++.+.++++++.+++|..+ +.+.+|+|||||||||||+++.     +++|+|+++|||+++|||+.
T Consensus         3 MftGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~g~SIavdGvcLTV~~~~-----~~~f~v~l~~eTl~~T~l~~   77 (96)
T 3a35_A            3 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEIS-----DDIIFINYPKNLSITTNLGT   77 (96)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEE-----TTEEEEEEETTHHHHSGGGG
T ss_pred             CEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEE-----CCEEEEEECCHHHHHCCCCC
T ss_conf             3356740230454310125421577860541000120157389625623887660-----88999995705675111566


Q ss_pred             CCCCCCCCCCCCCHHHH
Q ss_conf             56566313354320000
Q gi|254780347|r   80 WGIGTFINLERSVKLGD   96 (204)
Q Consensus        80 l~~G~~VNLE~a~~~g~   96 (204)
                      |++|++|||||+|++++
T Consensus        78 ~~~G~~VNlE~~l~~~~   94 (96)
T 3a35_A           78 LEKGSDVNVETLNVSNE   94 (96)
T ss_dssp             CCTTCEEEEEECC----
T ss_pred             CCCCCEEEECCCCCCCC
T ss_conf             89899999799003767


No 5  
>>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:95-186)
Probab=99.96  E-value=1.8e-29  Score=192.62  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             94533711899999987699359999817551-12667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      ||||||+++|+|.++++.+++.++.++.|..+ +.+.+|+|||||||||||+++.     +++|.|+++|||+++|+|+.
T Consensus         3 MftGiI~~~g~i~~i~~~~~~~~~~i~~~~~~~~~i~~g~SIavnGvcLTV~~i~-----~~~f~v~i~~eTl~~T~l~~   77 (92)
T 3ddy_A            3 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMS-----DSIITLNYSRDLLASTNIAS   77 (92)
T ss_dssp             CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEE-----TTEEEEEEEGGGGGTSSGGG
T ss_pred             CEEEEEEEEEEEEEEEECCCEEEEEEECCHHHHCCEEECCEEEEEEEEEEEEEEC-----CCEEEEEECHHHHHHCCCCC
T ss_conf             5878944899999999769939999998979960187362387710799998441-----98999998057774162014


Q ss_pred             CCCCCCCCCCCCCHH
Q ss_conf             565663133543200
Q gi|254780347|r   80 WGIGTFINLERSVKL   94 (204)
Q Consensus        80 l~~G~~VNLE~a~~~   94 (204)
                      |++|++|||||++||
T Consensus        78 ~k~G~~VNlE~~~ky   92 (92)
T 3ddy_A           78 LAKDVKVNVEILNEW   92 (92)
T ss_dssp             CCTTCEEEEEECC--
T ss_pred             CCCCCEEEEEEEECC
T ss_conf             758998999998769


No 6  
>>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213)
Probab=99.95  E-value=6.7e-28  Score=183.38  Aligned_cols=107  Identities=32%  Similarity=0.422  Sum_probs=101.7

Q ss_pred             HHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCC-CCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCC
Q ss_conf             00004764245401001101110023313798751342-11210023571998234578774168549999844433013
Q gi|254780347|r   94 LGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEET  172 (204)
Q Consensus        94 ~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~-~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T  172 (204)
                      .-|++|||+++||+-.+|++.++-..++++.+||++.. .+++|+.+||+|.+||+||||.++....|+|++||||+++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (128)
T 1i8d_A            5 IVDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERT   84 (128)
T ss_dssp             CCSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHS
T ss_pred             ECCCCCCCCEEEEECCEEEEEEEEECCCCEEEEEEEHHHHHHHHHEECCEEEEEEEEEEEEEECCCEEEEEECHHHHHHC
T ss_conf             13550786278986725799999964894499998025566543034126998107999998749889999818867547


Q ss_pred             CHHHCCCCCEEEEEHHHHHHHHHHHHCC
Q ss_conf             3002489967469713588999998602
Q gi|254780347|r  173 TWKMHKVGDLINIEVDSMMRYIARLYAL  200 (204)
Q Consensus       173 ~l~~~k~Gd~VNiE~D~l~kyv~r~~~~  200 (204)
                      +|+.+|.|.+||+|+|.++|||+|+++.
T Consensus        85 ~~~~~~~~~~~~~~i~PLTKYIEKYLER  112 (128)
T 1i8d_A           85 TLGKKKLGARVNIEIDPQTQAVVDTVER  112 (128)
T ss_dssp             SGGGCCTTCEEEEEECHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEEEHHHHHHHHHHHH
T ss_conf             2013768998999384088999999999


No 7  
>>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:95-186)
Probab=99.94  E-value=1.3e-27  Score=181.61  Aligned_cols=86  Identities=17%  Similarity=0.310  Sum_probs=84.8

Q ss_pred             EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC
Q ss_conf             24540100110111002331379875134211210023571998234578774168549999844433013300248996
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD  181 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd  181 (204)
                      +++||||++|+|.++++.+++..++|++|+.+.+|++.|||||+|||||||+++.+++|++++||||+++|+|+.+++||
T Consensus         3 MftGiI~~~g~i~~i~~~~~~~~~~i~~~~~~~~~i~~g~SIavnGvcLTV~~i~~~~f~v~i~~eTl~~T~l~~~k~G~   82 (92)
T 3ddy_A            3 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV   82 (92)
T ss_dssp             CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEETTEEEEEEEGGGGGTSSGGGCCTTC
T ss_pred             CEEEEEEEEEEEEEEEECCCEEEEEEECCHHHHCCEEECCEEEEEEEEEEEEEECCCEEEEEECHHHHHHCCCCCCCCCC
T ss_conf             58789448999999997699399999989799601873623877107999984419899999805777416201475899


Q ss_pred             EEEEEH
Q ss_conf             746971
Q gi|254780347|r  182 LINIEV  187 (204)
Q Consensus       182 ~VNiE~  187 (204)
                      +||||.
T Consensus        83 ~VNlE~   88 (92)
T 3ddy_A           83 KVNVEI   88 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
T ss_conf             899999


No 8  
>>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:1-94)
Probab=99.93  E-value=6.3e-27  Score=177.70  Aligned_cols=89  Identities=22%  Similarity=0.327  Sum_probs=85.5

Q ss_pred             EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC
Q ss_conf             24540100110111002331379875134211210023571998234578774168549999844433013300248996
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD  181 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd  181 (204)
                      +++||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.+. ||||+++|+|+.+++||
T Consensus         1 MFtG~I~~~g~V~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavdGvsLTV~~~~~~~f~~~-ipeTl~~T~l~~~~~G~   79 (94)
T 3a35_A            1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVYFD-IDQAINTTTFRELEVGN   79 (94)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEETTEEEEE-ESTTTTTSSGGGCCTTC
T ss_pred             CCCEECCEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCCCHHHHH-HHHHHHHHHCCCCCCCC
T ss_conf             96920280999999998899289999977166644557873897778648984363202134-56666642023102366


Q ss_pred             EEEEEHHHHH
Q ss_conf             7469713588
Q gi|254780347|r  182 LINIEVDSMM  191 (204)
Q Consensus       182 ~VNiE~D~l~  191 (204)
                      +||||.|+.+
T Consensus        80 ~VNlE~~l~~   89 (94)
T 3a35_A           80 KVNLEVRPEF   89 (94)
T ss_dssp             EEEEECCCSS
T ss_pred             CCCCCCCCCC
T ss_conf             3351343233


No 9  
>>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:1-94)
Probab=99.93  E-value=3.1e-26  Score=173.64  Aligned_cols=89  Identities=24%  Similarity=0.302  Sum_probs=85.7

Q ss_pred             EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC
Q ss_conf             24540100110111002331379875134211210023571998234578774168549999844433013300248996
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD  181 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd  181 (204)
                      +.+||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.++ ||||+++|+|+.+++||
T Consensus         1 MFtG~I~~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvcLTV~~v~~~~f~v~-ipeTl~~T~l~~~~~G~   79 (94)
T 3ddy_A            1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVYFD-IDQALGTTTFDGLKEGD   79 (94)
T ss_dssp             CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEETTEEEEE-ECTTTTTSSGGGCCTTC
T ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECCCEEEEE-CHHHHHHCCHHHCCCCC
T ss_conf             98824038999999997699389999917764342467878996879999999679879998-16973020060174799


Q ss_pred             EEEEEHHHHH
Q ss_conf             7469713588
Q gi|254780347|r  182 LINIEVDSMM  191 (204)
Q Consensus       182 ~VNiE~D~l~  191 (204)
                      +||||.|+.+
T Consensus        80 ~VNlE~~l~~   89 (94)
T 3ddy_A           80 QVNLEIHPKF   89 (94)
T ss_dssp             EEEEECCC--
T ss_pred             EEEEECCCCC
T ss_conf             9854206668


No 10 
>>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:7-91)
Probab=99.92  E-value=4.2e-25  Score=167.02  Aligned_cols=84  Identities=27%  Similarity=0.453  Sum_probs=63.8

Q ss_pred             EEEEEEEEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCC
Q ss_conf             1189999998769935999981755-112667724653331542365045556686799998656553201355565663
Q gi|254780347|r    7 TDIGKIIAMTPIAKGMRLRVMTSYN-TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTF   85 (204)
Q Consensus         7 ~~~G~V~~i~~~~~~~~l~i~~~~~-~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~~   85 (204)
                      |++|+|.++++.++++++.+++|.. ++.+.+|+|||||||||||+++.     +++|+|+++|||+++|||+.|++|++
T Consensus         1 e~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvsLTV~~~~-----~~~f~v~i~~eTl~~T~l~~~~~G~~   75 (85)
T 1i8d_A            1 QGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEIN-----GNHVSFDLMKETLRITNLGDLKVGDW   75 (85)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEE-----TTEEEEEEEHHHHHHSGGGGCCTTCE
T ss_pred             CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEEC-----CCEEEEECHHHHHHHHCCCCCCCCCE
T ss_conf             7089999999769966999982840004477888799787980468972-----65478863377764412453356974


Q ss_pred             CCCCCCCHHH
Q ss_conf             1335432000
Q gi|254780347|r   86 INLERSVKLG   95 (204)
Q Consensus        86 VNLE~a~~~g   95 (204)
                      |||||||++.
T Consensus        76 VNlE~~l~~~   85 (85)
T 1i8d_A           76 VNVERAAKFS   85 (85)
T ss_dssp             EEEEECCBTT
T ss_pred             EEECCCCCCC
T ss_conf             6004452588


No 11 
>>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:6-92)
Probab=99.91  E-value=2.3e-25  Score=168.60  Aligned_cols=85  Identities=27%  Similarity=0.384  Sum_probs=48.6

Q ss_pred             EEEEEEEEEEEECCCC-EEEEEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCC
Q ss_conf             7118999999876993-599998175511266772465333154236504555668679999865655320135556566
Q gi|254780347|r    6 VTDIGKIIAMTPIAKG-MRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGT   84 (204)
Q Consensus         6 V~~~G~V~~i~~~~~~-~~l~i~~~~~~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~   84 (204)
                      |+++|+|.++++.++. .++.+.++..+..+.+|+|||||||||||+++.     +++|.|+++|||+++|||+.|++||
T Consensus         1 V~~~g~I~~i~~~~~~~~~~~~~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~v~i~~eTl~~T~l~~~k~Gd   75 (87)
T 1kzl_A            1 VEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFD-----RYHFTVGIAPESLRLTNLGQCKAGD   75 (87)
T ss_dssp             CCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEEC-----SSEEEEEECHHHHHHSSGGGCCTTC
T ss_pred             CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEEEECC-----CCEEEEEEHHHHHHHHHHCCCCCCC
T ss_conf             07599999989768995899997674324477788799889998899768-----5479999838845465514466898


Q ss_pred             CCCCCCCCHHH
Q ss_conf             31335432000
Q gi|254780347|r   85 FINLERSVKLG   95 (204)
Q Consensus        85 ~VNLE~a~~~g   95 (204)
                      +|||||+|+++
T Consensus        76 ~VNlE~~l~~~   86 (87)
T 1kzl_A           76 PVNLERAVLSS   86 (87)
T ss_dssp             EEEEEECCCCS
T ss_pred             EECCCCCEECC
T ss_conf             78535552178


No 12 
>>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:6-92)
Probab=99.91  E-value=2e-24  Score=163.10  Aligned_cols=86  Identities=17%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             CCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCCEEEEE
Q ss_conf             10011011100233137987513421121002357199823457877416854999984443301330024899674697
Q gi|254780347|r  107 IDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIE  186 (204)
Q Consensus       107 Vd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd~VNiE  186 (204)
                      ||++|+|.++++.+++....+..|+.+.+|+..|||||+|||||||+++.+++|.+++||||+++|||+.|++||+||||
T Consensus         1 V~~~g~I~~i~~~~~~~~~~~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~i~~eTl~~T~l~~~k~Gd~VNlE   80 (87)
T 1kzl_A            1 VEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAGDPVNLE   80 (87)
T ss_dssp             CCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTTCEEEEE
T ss_pred             CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCEECCC
T ss_conf             07599999989768995899997674324477788799889998899768547999983884546551446689878535


Q ss_pred             HHHHHH
Q ss_conf             135889
Q gi|254780347|r  187 VDSMMR  192 (204)
Q Consensus       187 ~D~l~k  192 (204)
                      .|+++|
T Consensus        81 ~~l~~~   86 (87)
T 1kzl_A           81 RAVLSS   86 (87)
T ss_dssp             ECCCCS
T ss_pred             CCEECC
T ss_conf             552178


No 13 
>>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:7-91)
Probab=99.91  E-value=8.2e-25  Score=165.32  Aligned_cols=83  Identities=27%  Similarity=0.326  Sum_probs=80.5

Q ss_pred             CCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCCEEEEEH
Q ss_conf             00110111002331379875134211210023571998234578774168549999844433013300248996746971
Q gi|254780347|r  108 DGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIEV  187 (204)
Q Consensus       108 d~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd~VNiE~  187 (204)
                      +++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.+++||||+++|||+.+++||+||||.
T Consensus         1 e~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvsLTV~~~~~~~f~v~i~~eTl~~T~l~~~~~G~~VNlE~   80 (85)
T 1i8d_A            1 QGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVER   80 (85)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTCEEEEEE
T ss_pred             CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECCCEEEEECHHHHHHHHCCCCCCCCCEEEECC
T ss_conf             70899999997699669999828400044778887997879804689726547886337776441245335697460044


Q ss_pred             HHH
Q ss_conf             358
Q gi|254780347|r  188 DSM  190 (204)
Q Consensus       188 D~l  190 (204)
                      ++.
T Consensus        81 ~l~   83 (85)
T 1i8d_A           81 AAK   83 (85)
T ss_dssp             CCB
T ss_pred             CCC
T ss_conf             525


No 14 
>>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:1-5,A:93-186)
Probab=99.85  E-value=1.5e-21  Score=146.29  Aligned_cols=97  Identities=32%  Similarity=0.517  Sum_probs=91.3

Q ss_pred             HHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCC-CCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCC
Q ss_conf             000004764245401001101110023313798751342-1121002357199823457877416854999984443301
Q gi|254780347|r   93 KLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEE  171 (204)
Q Consensus        93 ~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~-~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~  171 (204)
                      --|-|+|||||||||||+++|++.++.+++.++.++.|+ .+.+|+++||+||+||.|||+..+.+..|++..|.+|.++
T Consensus         2 ~~~~r~GGHfvqGHVd~t~eIVekk~Dg~sirf~vk~~dp~~l~y~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~qsk   81 (99)
T 1kzl_A            2 FTGLRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSK   81 (99)
T ss_dssp             BCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTT
T ss_pred             CCCCEECCEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEHHHHCCEEECCEEEEEEEEEEEEEECCCEEEEEEEHHHHHH
T ss_conf             88318677467998106899999984499637999951012332332302089850489998662998999997788654


Q ss_pred             CCHHHCCCCCEEEEEHHH
Q ss_conf             330024899674697135
Q gi|254780347|r  172 TTWKMHKVGDLINIEVDS  189 (204)
Q Consensus       172 T~l~~~k~Gd~VNiE~D~  189 (204)
                      -..+...+||.||+|.|.
T Consensus        82 ~i~a~~NV~~~~~~~vdQ   99 (99)
T 1kzl_A           82 VIMAKKNVGDLVNVEVDQ   99 (99)
T ss_dssp             SGGGGCCTTCEEEEEECT
T ss_pred             CHHCCCCCCCEEEEEEHH
T ss_conf             410037789999984503


No 15 
>>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213)
Probab=99.15  E-value=9.4e-11  Score=83.08  Aligned_cols=85  Identities=26%  Similarity=0.332  Sum_probs=66.8

Q ss_pred             CCCEEEEEE------------EEEEEEEECCCCEEEEEEE--CCCCCC-CCCCCEEEECCEEEEEEEECCCCCCCCEEEE
Q ss_conf             945337118------------9999998769935999981--755112-6677246533315423650455566867999
Q gi|254780347|r    1 MFTGIVTDI------------GKIIAMTPIAKGMRLRVMT--SYNTSK-MKLGCSIAHAGICLTVVRLSEEHSVDNWYEV   65 (204)
Q Consensus         1 MFtGIV~~~------------G~V~~i~~~~~~~~l~i~~--~~~~~~-l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~   65 (204)
                      ||||||+++            +.|.++-..++..++.++.  +..+.- +-.| =|.+||++|||-+++     ...|.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~   74 (128)
T 1i8d_A            1 MFTGIVDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKG-FIGIDGISLTVGEVT-----PTRFCV   74 (128)
T ss_dssp             CBCSCCSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTC-EEEETTEEEECCSBC-----SSEEEE
T ss_pred             CCCEECCCCCCCCEEEEECCEEEEEEEEECCCCEEEEEEEHHHHHHHHHEECC-EEEEEEEEEEEEEEC-----CCEEEE
T ss_conf             95851355078627898672579999996489449999802556654303412-699810799999874-----988999


Q ss_pred             EEEHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             98656553201355565663133543
Q gi|254780347|r   66 EVWAETNRITNIASWGIGTFINLERS   91 (204)
Q Consensus        66 ~~~~ETl~~T~l~~l~~G~~VNLE~a   91 (204)
                      .++||||.||+++..+.|.+||+|.-
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~i~  100 (128)
T 1i8d_A           75 HLIPETLERTTLGKKKLGARVNIEID  100 (128)
T ss_dssp             EECHHHHHHSSGGGCCTTCEEEEEEC
T ss_pred             EECHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf             98188675472013768998999384


No 16 
>>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:1-5,A:93-186)
Probab=98.43  E-value=2.4e-06  Score=57.25  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=70.7

Q ss_pred             CCCEE----------EEEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEE
Q ss_conf             94533----------71189999998769935999981755--1126677246533315423650455566867999986
Q gi|254780347|r    1 MFTGI----------VTDIGKIIAMTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVW   68 (204)
Q Consensus         1 MFtGI----------V~~~G~V~~i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~   68 (204)
                      ||||+          |...+.|..-++..+.+|+.++.+..  ++-+-.-+-||.||.+||++.++     ++.|+.-.+
T Consensus         1 ~~~~~r~GGHfvqGHVd~t~eIVekk~Dg~sirf~vk~~dp~~l~y~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~   75 (99)
T 1kzl_A            1 MFTGLRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----DSTFSIMMI   75 (99)
T ss_dssp             CBCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC-----SSCEEEEEC
T ss_pred             CCCCCEECCEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEHHHHCCEEECCEEEEEEEEEEEEEEC-----CCEEEEEEE
T ss_conf             988318677467998106899999984499637999951012332332302089850489998662-----998999997


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             5655320135556566313354
Q gi|254780347|r   69 AETNRITNIASWGIGTFINLER   90 (204)
Q Consensus        69 ~ETl~~T~l~~l~~G~~VNLE~   90 (204)
                      .-|-++--..-..+||.||+|.
T Consensus        76 ~~~qsk~i~a~~NV~~~~~~~v   97 (99)
T 1kzl_A           76 SYTQSKVIMAKKNVGDLVNVEV   97 (99)
T ss_dssp             HHHHTTSGGGGCCTTCEEEEEE
T ss_pred             HHHHHHCHHCCCCCCCEEEEEE
T ss_conf             7886544100377899999845


No 17 
>>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A (A:37-109)
Probab=62.04  E-value=12  Score=18.15  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=30.7

Q ss_pred             EEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEECC
Q ss_conf             98769935999981755--112667724653331542365045
Q gi|254780347|r   15 MTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLSE   55 (204)
Q Consensus        15 i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~~   55 (204)
                      +.+...+.++.+.....  ..++++|+++|+|--.+++.++=.
T Consensus        17 IVk~s~g~~~~V~v~~~vd~~~Lkpg~rVal~~~s~~Iv~vLp   59 (73)
T 2wg5_A           17 VVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP   59 (73)
T ss_dssp             EEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCCHHHCCCCCEEEECCCCCEEEEECC
T ss_conf             9995799889998216769889899899988677417786489


No 18 
>>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} (A:1-268,A:330-460)
Probab=54.80  E-value=1.5  Score=23.45  Aligned_cols=42  Identities=31%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             CCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCC
Q ss_conf             3133543200000476424540100110111002331379875134211
Q gi|254780347|r   85 FINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHNL  133 (204)
Q Consensus        85 ~VNLE~a~~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~  133 (204)
                      +|||||+|.+|.-     -+.-.|  |+|+.|.-.+++.-.-|.++..+
T Consensus       190 rVnLERSLqfG~~-----GsATPD--AKIVRISLDDdstGAGIhLNd~L  231 (399)
T 1xez_A          190 RVNLERSLQYGIV-----GSATPD--AKIVRISLDDDSTGAGIHLNDQL  231 (399)
T ss_dssp             EEEEEEEBCBSST-----TSCBCC--EEEEEEEECTTTCCCEEECCSSC
T ss_pred             EEEEEEEECCCCC-----CCCCCC--CEEEEEEECCCCCCCCEEECHHH
T ss_conf             9866762012565-----777888--44899995588887735861010


No 19 
>>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} (A:18-85)
Probab=45.08  E-value=23  Score=16.50  Aligned_cols=41  Identities=20%  Similarity=0.148  Sum_probs=30.4

Q ss_pred             EEEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEEC
Q ss_conf             998769935999981755--11266772465333154236504
Q gi|254780347|r   14 AMTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLS   54 (204)
Q Consensus        14 ~i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~   54 (204)
                      .+-+...+.++.+.....  .+++++|+++|+|--.+++..+=
T Consensus        16 ~IVkss~g~~~~V~v~~~vd~~~Lkpg~rVaL~~~s~~Iv~vL   58 (68)
T 3h43_A           16 VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVL   58 (68)
T ss_dssp             EEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCCHHHCCCCCEEEECCCCEEEEEEC
T ss_conf             9999679998999806987978989999999987460845775


No 20 
>>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:1-103)
Probab=44.31  E-value=23  Score=16.43  Aligned_cols=81  Identities=6%  Similarity=0.042  Sum_probs=49.3

Q ss_pred             EEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEEC--C------EEEEEEEECCCCCCCCEEEEEEE--HHHHHHCCC
Q ss_conf             8999999876-99359999817551126677246533--3------15423650455566867999986--565532013
Q gi|254780347|r    9 IGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHA--G------ICLTVVRLSEEHSVDNWYEVEVW--AETNRITNI   77 (204)
Q Consensus         9 ~G~V~~i~~~-~~~~~l~i~~~~~~~~l~~G~SIavn--G------vCLTV~~i~~~~~~~~~f~~~~~--~ETl~~T~l   77 (204)
                      .++|.++++. ++..++++..+........|..|.+.  +      -.+|+.....+   ++.++|.+-  +.-.--.-|
T Consensus         7 ~~~V~~~~~~~~~v~~~~l~~~~~~~~~~pGQ~i~i~~~~~~~~~~r~ys~~s~~~~---~~~l~~~vk~~~~G~~s~~l   83 (103)
T 1ep3_B            7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTGTYKL   83 (103)
T ss_dssp             EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSHHHHH
T ss_pred             CEEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCC---CCEEEEEEEECCCCCHHHHH
T ss_conf             229999999459989999988883467899950899947899288998895624899---98899999988997578998


Q ss_pred             CCCCCCCCCCCCCCC
Q ss_conf             555656631335432
Q gi|254780347|r   78 ASWGIGTFINLERSV   92 (204)
Q Consensus        78 ~~l~~G~~VNLE~a~   92 (204)
                      .+++.||.|.+.-+.
T Consensus        84 ~~l~~Gd~i~i~gP~   98 (103)
T 1ep3_B           84 SKLESGAKVDVMGPL   98 (103)
T ss_dssp             HTCCTTCEEEEEEEE
T ss_pred             HCCCCCCEEEEECCC
T ss_conf             548998999997465


No 21 
>>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (G:)
Probab=39.90  E-value=12  Score=18.18  Aligned_cols=17  Identities=29%  Similarity=0.440  Sum_probs=13.8

Q ss_pred             EHHHHHHHHHHHHCCCC
Q ss_conf             71358899999860233
Q gi|254780347|r  186 EVDSMMRYIARLYALNT  202 (204)
Q Consensus       186 E~D~l~kyv~r~~~~~~  202 (204)
                      +.|+|.||++|-|+...
T Consensus       103 ~~D~LMKYiYkG~~~p~  119 (152)
T 3dwl_G          103 EIDNIVNFIYRGLANPQ  119 (152)
T ss_dssp             HHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             42466999987136888


No 22 
>>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (G:)
Probab=37.75  E-value=16  Score=17.29  Aligned_cols=18  Identities=28%  Similarity=0.501  Sum_probs=14.5

Q ss_pred             EHHHHHHHHHHHHCCCCC
Q ss_conf             713588999998602335
Q gi|254780347|r  186 EVDSMMRYIARLYALNTS  203 (204)
Q Consensus       186 E~D~l~kyv~r~~~~~~~  203 (204)
                      +.|+|.||++|-|+....
T Consensus       102 ~~D~LMKYiYkG~~~p~~  119 (151)
T 1k8k_G          102 GVDLLMKYIYKGFESPSD  119 (151)
T ss_dssp             HHHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             889999999974158886


No 23 
>>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:1-99)
Probab=33.77  E-value=34  Score=15.44  Aligned_cols=77  Identities=8%  Similarity=0.102  Sum_probs=44.0

Q ss_pred             EEEEEEEEE-CCCCEEEEEEECCCCCCCCCCCEEE----ECCE----EEEEEEECCCCCCCCEEEEEEE--HHHHHHCCC
Q ss_conf             899999987-6993599998175511266772465----3331----5423650455566867999986--565532013
Q gi|254780347|r    9 IGKIIAMTP-IAKGMRLRVMTSYNTSKMKLGCSIA----HAGI----CLTVVRLSEEHSVDNWYEVEVW--AETNRITNI   77 (204)
Q Consensus         9 ~G~V~~i~~-~~~~~~l~i~~~~~~~~l~~G~SIa----vnGv----CLTV~~i~~~~~~~~~f~~~~~--~ETl~~T~l   77 (204)
                      ..+|.++++ .++..+++++.+.. .+...|+-+.    .+|-    -.|+.+...    ++.+++.+-  +.-.-..-|
T Consensus         5 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~pGQ~v~l~~~~~~~~~~r~ysi~s~~~----~~~~~~~vk~~~~G~~t~~l   79 (99)
T 2qdx_A            5 TERVLSVHHWNDTLFSFKTTRNPG-LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPDGPLTSRL   79 (99)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCTT-CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTTCTTHHHH
T ss_pred             EEEEEEEEECCCCEEEEEECCCCC-CCCCCCCEEEEEEECCCEEEEEECCCCCCCC----CCCEEEEEEEEEECCCCCEE
T ss_conf             689999884699879999788998-9899993599996119907640000025556----66326789998503531011


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             5556566313354
Q gi|254780347|r   78 ASWGIGTFINLER   90 (204)
Q Consensus        78 ~~l~~G~~VNLE~   90 (204)
                      ..+++||.|.+.+
T Consensus        80 ~~l~~Gd~i~i~~   92 (99)
T 2qdx_A           80 QHLKEGDELMVSR   92 (99)
T ss_dssp             TTCCTTCEEEECS
T ss_pred             CCCCCCCEEEEEC
T ss_conf             0235674136625


No 24 
>>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} (A:114-160)
Probab=23.88  E-value=28  Score=15.94  Aligned_cols=16  Identities=25%  Similarity=0.546  Sum_probs=13.8

Q ss_pred             EHHHHHHHHHHHHCCC
Q ss_conf             7135889999986023
Q gi|254780347|r  186 EVDSMMRYIARLYALN  201 (204)
Q Consensus       186 E~D~l~kyv~r~~~~~  201 (204)
                      |+|++..|+|..+..+
T Consensus        29 EfDifinYIE~Yl~~K   44 (47)
T 2ilk_A           29 EFDIFINYIEAYMTMK   44 (47)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999999999999987


No 25 
>>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:102-189)
Probab=23.40  E-value=53  Score=14.35  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCC---CCEECCCCEEEEEEEEEEEEEE
Q ss_conf             5565663133543200000476424540100110111002331379875134211---2100235719982345787741
Q gi|254780347|r   79 SWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHNL---EQFIAVKGSVCLNGVSLTVNLV  155 (204)
Q Consensus        79 ~l~~G~~VNLE~a~~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~---~~~l~~KgsI~idGvSLTV~~~  155 (204)
                      .|..-.+=+.++.++.||++.|--+.|.|+.+..+          .-+|.+|...   ..++++.|+-++|=+=+.+-+-
T Consensus        10 ~LD~ek~W~F~p~vk~Gd~V~~GdilG~V~Et~~i----------~HkIMvPp~~~G~v~~i~~~G~Ytv~d~I~~ie~~   79 (88)
T 3i4l_A           10 ALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSII----------VHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTP   79 (88)
T ss_dssp             SSCSSSCEEEEECCCTTCEECTTCEEEEEECSSSC----------EEEEECCTTCCEEEEEECCSEEECTTSCCEEEECT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECC
T ss_conf             77744345546433458800157613657554543----------44334688767726884267886611045443136


Q ss_pred             CCCEEE
Q ss_conf             685499
Q gi|254780347|r  156 GKNFFD  161 (204)
Q Consensus       156 ~~~~f~  161 (204)
                      +....+
T Consensus        80 ~G~~~~   85 (88)
T 3i4l_A           80 SGEIKE   85 (88)
T ss_dssp             TCCEEE
T ss_pred             CCCCCC
T ss_conf             666555


No 26 
>>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:137-236)
Probab=22.67  E-value=54  Score=14.26  Aligned_cols=55  Identities=24%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             EEEEEECCCCCCCCCCCEEEECC--EEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99998175511266772465333--15423650455566867999986565532013555656631335
Q gi|254780347|r   23 RLRVMTSYNTSKMKLGCSIAHAG--ICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTFINLE   89 (204)
Q Consensus        23 ~l~i~~~~~~~~l~~G~SIavnG--vCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~~VNLE   89 (204)
                      ++.+..+..+.++++|+.|.+|.  +.|.|.++++.     .+...+       ++=+.++.+.-|||-
T Consensus        39 ~I~v~~~~l~~~v~~G~~IlidDG~i~l~V~~v~~~-----~i~~~v-------~~~G~L~s~KgvnlP   95 (100)
T 3gr4_A           39 ILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGAD-----FLVTEV-------ENGGSLGSKKGVNLP   95 (100)
T ss_dssp             EEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSS-----EEEEEE-------EECEEECSSCBEECT
T ss_pred             EEEEECCCCHHHCCCCCHHEEECCCEEEEEEECCCC-----CEEEEE-------ECCCEECCCCCCCEE
T ss_conf             454200013000343102101056316887403677-----127998-------148374666676410


No 27 
>>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} (A:316-373)
Probab=21.83  E-value=21  Score=16.74  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=15.6

Q ss_pred             CCCCCCCCCCCCCCCCCHHHH
Q ss_conf             135556566313354320000
Q gi|254780347|r   76 NIASWGIGTFINLERSVKLGD   96 (204)
Q Consensus        76 ~l~~l~~G~~VNLE~a~~~g~   96 (204)
                      ++..-+.|++||||+||-.-+
T Consensus         9 T~~G~~eG~Fv~l~~AMH~~~   29 (58)
T 2cvc_A            9 TVNGTADSKFVQLEKAMHQPD   29 (58)
T ss_dssp             CTTCCGGGTTCCHHHHHHCTT
T ss_pred             CCCCCCCCCCCCCCCCCCCCC
T ss_conf             756667765422354321356


Done!