Query gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 131 out of 2487 Neff 5.8 Searched_HMMs 33803 Date Wed Jun 1 12:27:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780347.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3ddy_A Lumazine protein, LUMP 100.0 8.8E-31 2.6E-35 200.2 9.6 93 1-99 1-94 (94) 2 >3a35_A Lumazine protein, LUMP 100.0 5.7E-31 1.7E-35 201.4 6.3 94 102-195 3-96 (96) 3 >3a35_A Lumazine protein, LUMP 100.0 2.4E-30 7.2E-35 197.7 8.7 93 1-99 1-94 (94) 4 >3a35_A Lumazine protein, LUMP 100.0 1.1E-29 3.2E-34 193.9 9.3 91 1-96 3-94 (96) 5 >3ddy_A Lumazine protein, LUMP 100.0 1.8E-29 5.2E-34 192.6 9.4 89 1-94 3-92 (92) 6 >1i8d_A Riboflavin synthase; r 99.9 6.7E-28 2E-32 183.4 8.3 107 94-200 5-112 (128) 7 >3ddy_A Lumazine protein, LUMP 99.9 1.3E-27 4E-32 181.6 7.3 86 102-187 3-88 (92) 8 >3a35_A Lumazine protein, LUMP 99.9 6.3E-27 1.9E-31 177.7 5.2 89 102-191 1-89 (94) 9 >3ddy_A Lumazine protein, LUMP 99.9 3.1E-26 9.2E-31 173.6 6.8 89 102-191 1-89 (94) 10 >1i8d_A Riboflavin synthase; r 99.9 4.2E-25 1.2E-29 167.0 10.3 84 7-95 1-85 (85) 11 >1kzl_A Riboflavin synthase; b 99.9 2.3E-25 6.7E-30 168.6 5.4 85 6-95 1-86 (87) 12 >1kzl_A Riboflavin synthase; b 99.9 2E-24 5.8E-29 163.1 9.5 86 107-192 1-86 (87) 13 >1i8d_A Riboflavin synthase; r 99.9 8.2E-25 2.4E-29 165.3 7.2 83 108-190 1-83 (85) 14 >1kzl_A Riboflavin synthase; b 99.9 1.5E-21 4.3E-26 146.3 7.9 97 93-189 2-99 (99) 15 >1i8d_A Riboflavin synthase; r 99.2 9.4E-11 2.8E-15 83.1 7.0 85 1-91 1-100 (128) 16 >1kzl_A Riboflavin synthase; b 98.4 2.4E-06 7.2E-11 57.2 9.8 85 1-90 1-97 (99) 17 >2wg5_A General control protei 62.0 12 0.00035 18.1 4.6 41 15-55 17-59 (73) 18 >1xez_A Hemolysin, cytolysin; 54.8 1.5 4.3E-05 23.5 -1.6 42 85-133 190-231 (399) 19 >3h43_A Proteasome-activating 45.1 23 0.00067 16.5 4.3 41 14-54 16-58 (68) 20 >1ep3_B Dihydroorotate dehydro 44.3 23 0.00068 16.4 7.5 81 9-92 7-98 (103) 21 >3dwl_G Actin-related protein 39.9 12 0.00034 18.2 1.1 17 186-202 103-119 (152) 22 >1k8k_G P16, ARP2/3 complex 16 37.8 16 0.00049 17.3 1.6 18 186-203 102-119 (151) 23 >2qdx_A Ferredoxin reductase; 33.8 34 0.001 15.4 4.6 77 9-90 5-92 (99) 24 >2ilk_A Interleukin-10; cytoki 23.9 28 0.00083 15.9 0.9 16 186-201 29-44 (47) 25 >3i4l_A A-type ATP synthase ca 23.4 53 0.0016 14.3 3.7 73 79-161 10-85 (88) 26 >3gr4_A Pyruvate kinase isozym 22.7 54 0.0016 14.3 4.8 55 23-89 39-95 (100) 27 >2cvc_A Cytochrome CC3, high-m 21.8 21 0.00061 16.7 -0.2 21 76-96 9-29 (58) No 1 >>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:1-94) Probab=99.97 E-value=8.8e-31 Score=200.24 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=88.0 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 9453371189999998769935999981755-112667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYN-TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~-~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) ||||||+++|+|.++++.++++++.+++|.. ++.+++|+|||||||||||+++.+ ++|.|+ +|||+++|||+. T Consensus 1 MFtG~I~~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvcLTV~~v~~-----~~f~v~-ipeTl~~T~l~~ 74 (94) T 3ddy_A 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILG-----DMVYFD-IDQALGTTTFDG 74 (94) T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEET-----TEEEEE-ECTTTTTSSGGG T ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECC-----CEEEEE-CHHHHHHCCHHH T ss_conf 98824038999999997699389999917764342467878996879999999679-----879998-169730200601 Q ss_pred CCCCCCCCCCCCCHHHHCCC Q ss_conf 56566313354320000047 Q gi|254780347|r 80 WGIGTFINLERSVKLGDRLD 99 (204) Q Consensus 80 l~~G~~VNLE~a~~~g~~lg 99 (204) |++||+|||||||+++||+| T Consensus 75 ~~~G~~VNlE~~l~~~~rlG 94 (94) T 3ddy_A 75 LKEGDQVNLEIHPKFGEVVG 94 (94) T ss_dssp CCTTCEEEEECCC------- T ss_pred CCCCCEEEEECCCCCCCCCC T ss_conf 74799985420666898608 No 2 >>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:95-190) Probab=99.97 E-value=5.7e-31 Score=201.36 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=83.6 Q ss_pred EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC Q ss_conf 24540100110111002331379875134211210023571998234578774168549999844433013300248996 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD 181 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd 181 (204) ++|||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|++++||||+++|||+.|++|| T Consensus 3 MftGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~g~SIavdGvcLTV~~~~~~~f~v~l~~eTl~~T~l~~~~~G~ 82 (96) T 3a35_A 3 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEKGS 82 (96) T ss_dssp CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEETTEEEEEEETTHHHHSGGGGCCTTC T ss_pred CEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEECCEEEEEECCHHHHHCCCCCCCCCC T ss_conf 33567402304543101254215778605410001201573896256238876608899999570567511156689899 Q ss_pred EEEEEHHHHHHHHH Q ss_conf 74697135889999 Q gi|254780347|r 182 LINIEVDSMMRYIA 195 (204) Q Consensus 182 ~VNiE~D~l~kyv~ 195 (204) +||||.|+++||+| T Consensus 83 ~VNlE~~l~~~~~e 96 (96) T 3a35_A 83 DVNVETLNVSNEWD 96 (96) T ss_dssp EEEEEECC------ T ss_pred EEEECCCCCCCCCC T ss_conf 99979900376789 No 3 >>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:1-94) Probab=99.96 E-value=2.4e-30 Score=197.67 Aligned_cols=93 Identities=25% Similarity=0.330 Sum_probs=88.3 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 94533711899999987699359999817551-12667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) ||||||+++|+|.++++.++++++.+++|+.+ ..+.+|+|||||||||||+++.+ ++|.|+ +|||+++|||+. T Consensus 1 MFtG~I~~~g~V~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavdGvsLTV~~~~~-----~~f~~~-ipeTl~~T~l~~ 74 (94) T 3a35_A 1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISG-----DVVYFD-IDQAINTTTFRE 74 (94) T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEET-----TEEEEE-ESTTTTTSSGGG T ss_pred CCCEECCEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCC-----CHHHHH-HHHHHHHHHCCC T ss_conf 96920280999999998899289999977166644557873897778648984363-----202134-566666420231 Q ss_pred CCCCCCCCCCCCCHHHHCCC Q ss_conf 56566313354320000047 Q gi|254780347|r 80 WGIGTFINLERSVKLGDRLD 99 (204) Q Consensus 80 l~~G~~VNLE~a~~~g~~lg 99 (204) |++|++|||||||++|||+| T Consensus 75 ~~~G~~VNlE~~l~~~~rlg 94 (94) T 3a35_A 75 LEVGNKVNLEVRPEFGSLLG 94 (94) T ss_dssp CCTTCEEEEECCCSSCCCCC T ss_pred CCCCCCCCCCCCCCCEEECC T ss_conf 02366335134323301048 No 4 >>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:95-190) Probab=99.96 E-value=1.1e-29 Score=193.89 Aligned_cols=91 Identities=13% Similarity=0.176 Sum_probs=86.7 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 94533711899999987699359999817551-12667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) ||||||+++|+|.++.+.++++++.+++|..+ +.+.+|+|||||||||||+++. +++|+|+++|||+++|||+. T Consensus 3 MftGiI~~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~g~SIavdGvcLTV~~~~-----~~~f~v~l~~eTl~~T~l~~ 77 (96) T 3a35_A 3 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEIS-----DDIIFINYPKNLSITTNLGT 77 (96) T ss_dssp CBCSCCCEEEEEEEEEEETTEEEEEEECCTTSCSCCCTTSEEEETTEEEECCEEE-----TTEEEEEEETTHHHHSGGGG T ss_pred CEEEEECCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEECCCCEEEEEEE-----CCEEEEEECCHHHHHCCCCC T ss_conf 3356740230454310125421577860541000120157389625623887660-----88999995705675111566 Q ss_pred CCCCCCCCCCCCCHHHH Q ss_conf 56566313354320000 Q gi|254780347|r 80 WGIGTFINLERSVKLGD 96 (204) Q Consensus 80 l~~G~~VNLE~a~~~g~ 96 (204) |++|++|||||+|++++ T Consensus 78 ~~~G~~VNlE~~l~~~~ 94 (96) T 3a35_A 78 LEKGSDVNVETLNVSNE 94 (96) T ss_dssp CCTTCEEEEEECC---- T ss_pred CCCCCEEEECCCCCCCC T ss_conf 89899999799003767 No 5 >>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:95-186) Probab=99.96 E-value=1.8e-29 Score=192.62 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=81.0 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 94533711899999987699359999817551-12667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) ||||||+++|+|.++++.+++.++.++.|..+ +.+.+|+|||||||||||+++. +++|.|+++|||+++|+|+. T Consensus 3 MftGiI~~~g~i~~i~~~~~~~~~~i~~~~~~~~~i~~g~SIavnGvcLTV~~i~-----~~~f~v~i~~eTl~~T~l~~ 77 (92) T 3ddy_A 3 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMS-----DSIITLNYSRDLLASTNIAS 77 (92) T ss_dssp CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEE-----TTEEEEEEEGGGGGTSSGGG T ss_pred CEEEEEEEEEEEEEEEECCCEEEEEEECCHHHHCCEEECCEEEEEEEEEEEEEEC-----CCEEEEEECHHHHHHCCCCC T ss_conf 5878944899999999769939999998979960187362387710799998441-----98999998057774162014 Q ss_pred CCCCCCCCCCCCCHH Q ss_conf 565663133543200 Q gi|254780347|r 80 WGIGTFINLERSVKL 94 (204) Q Consensus 80 l~~G~~VNLE~a~~~ 94 (204) |++|++|||||++|| T Consensus 78 ~k~G~~VNlE~~~ky 92 (92) T 3ddy_A 78 LAKDVKVNVEILNEW 92 (92) T ss_dssp CCTTCEEEEEECC-- T ss_pred CCCCCEEEEEEEECC T ss_conf 758998999998769 No 6 >>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213) Probab=99.95 E-value=6.7e-28 Score=183.38 Aligned_cols=107 Identities=32% Similarity=0.422 Sum_probs=101.7 Q ss_pred HHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCC-CCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCC Q ss_conf 00004764245401001101110023313798751342-11210023571998234578774168549999844433013 Q gi|254780347|r 94 LGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEET 172 (204) Q Consensus 94 ~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~-~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T 172 (204) .-|++|||+++||+-.+|++.++-..++++.+||++.. .+++|+.+||+|.+||+||||.++....|+|++||||+++| T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (128) T 1i8d_A 5 IVDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERT 84 (128) T ss_dssp CCSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHS T ss_pred ECCCCCCCCEEEEECCEEEEEEEEECCCCEEEEEEEHHHHHHHHHEECCEEEEEEEEEEEEEECCCEEEEEECHHHHHHC T ss_conf 13550786278986725799999964894499998025566543034126998107999998749889999818867547 Q ss_pred CHHHCCCCCEEEEEHHHHHHHHHHHHCC Q ss_conf 3002489967469713588999998602 Q gi|254780347|r 173 TWKMHKVGDLINIEVDSMMRYIARLYAL 200 (204) Q Consensus 173 ~l~~~k~Gd~VNiE~D~l~kyv~r~~~~ 200 (204) +|+.+|.|.+||+|+|.++|||+|+++. T Consensus 85 ~~~~~~~~~~~~~~i~PLTKYIEKYLER 112 (128) T 1i8d_A 85 TLGKKKLGARVNIEIDPQTQAVVDTVER 112 (128) T ss_dssp SGGGCCTTCEEEEEECHHHHHHHHHHHH T ss_pred CCCCCCCCCEEEEEEEHHHHHHHHHHHH T ss_conf 2013768998999384088999999999 No 7 >>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:95-186) Probab=99.94 E-value=1.3e-27 Score=181.61 Aligned_cols=86 Identities=17% Similarity=0.310 Sum_probs=84.8 Q ss_pred EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC Q ss_conf 24540100110111002331379875134211210023571998234578774168549999844433013300248996 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD 181 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd 181 (204) +++||||++|+|.++++.+++..++|++|+.+.+|++.|||||+|||||||+++.+++|++++||||+++|+|+.+++|| T Consensus 3 MftGiI~~~g~i~~i~~~~~~~~~~i~~~~~~~~~i~~g~SIavnGvcLTV~~i~~~~f~v~i~~eTl~~T~l~~~k~G~ 82 (92) T 3ddy_A 3 GLTGNIKGTALVAAIEENDAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAKDV 82 (92) T ss_dssp CBCSCCCEEEEEEEEECCSSEEEEEEECCTTTCSCCCTTCEEEETTEEEECCEEETTEEEEEEEGGGGGTSSGGGCCTTC T ss_pred CEEEEEEEEEEEEEEEECCCEEEEEEECCHHHHCCEEECCEEEEEEEEEEEEEECCCEEEEEECHHHHHHCCCCCCCCCC T ss_conf 58789448999999997699399999989799601873623877107999984419899999805777416201475899 Q ss_pred EEEEEH Q ss_conf 746971 Q gi|254780347|r 182 LINIEV 187 (204) Q Consensus 182 ~VNiE~ 187 (204) +||||. T Consensus 83 ~VNlE~ 88 (92) T 3ddy_A 83 KVNVEI 88 (92) T ss_dssp EEEEEE T ss_pred EEEEEE T ss_conf 899999 No 8 >>3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* (A:1-94) Probab=99.93 E-value=6.3e-27 Score=177.70 Aligned_cols=89 Identities=22% Similarity=0.327 Sum_probs=85.5 Q ss_pred EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC Q ss_conf 24540100110111002331379875134211210023571998234578774168549999844433013300248996 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD 181 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd 181 (204) +++||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.+. ||||+++|+|+.+++|| T Consensus 1 MFtG~I~~~g~V~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavdGvsLTV~~~~~~~f~~~-ipeTl~~T~l~~~~~G~ 79 (94) T 3a35_A 1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTVVRISGDVVYFD-IDQAINTTTFRELEVGN 79 (94) T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCHHHHHTCCTTCEEEETTEEEEEEEEETTEEEEE-ESTTTTTSSGGGCCTTC T ss_pred CCCEECCEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCCCHHHHH-HHHHHHHHHCCCCCCCC T ss_conf 96920280999999998899289999977166644557873897778648984363202134-56666642023102366 Q ss_pred EEEEEHHHHH Q ss_conf 7469713588 Q gi|254780347|r 182 LINIEVDSMM 191 (204) Q Consensus 182 ~VNiE~D~l~ 191 (204) +||||.|+.+ T Consensus 80 ~VNlE~~l~~ 89 (94) T 3a35_A 80 KVNLEVRPEF 89 (94) T ss_dssp EEEEECCCSS T ss_pred CCCCCCCCCC T ss_conf 3351343233 No 9 >>3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} (A:1-94) Probab=99.93 E-value=3.1e-26 Score=173.64 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=85.7 Q ss_pred EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC Q ss_conf 24540100110111002331379875134211210023571998234578774168549999844433013300248996 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD 181 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd 181 (204) +.+||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.++ ||||+++|+|+.+++|| T Consensus 1 MFtG~I~~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvcLTV~~v~~~~f~v~-ipeTl~~T~l~~~~~G~ 79 (94) T 3ddy_A 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRILGDMVYFD-IDQALGTTTFDGLKEGD 79 (94) T ss_dssp CBCSCCCEEEEEEEEEECSSCEEEEEECCTTTGGGCCTTCEEEETTEEEEEEEEETTEEEEE-ECTTTTTSSGGGCCTTC T ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECCCEEEEE-CHHHHHHCCHHHCCCCC T ss_conf 98824038999999997699389999917764342467878996879999999679879998-16973020060174799 Q ss_pred EEEEEHHHHH Q ss_conf 7469713588 Q gi|254780347|r 182 LINIEVDSMM 191 (204) Q Consensus 182 ~VNiE~D~l~ 191 (204) +||||.|+.+ T Consensus 80 ~VNlE~~l~~ 89 (94) T 3ddy_A 80 QVNLEIHPKF 89 (94) T ss_dssp EEEEECCC-- T ss_pred EEEEECCCCC T ss_conf 9854206668 No 10 >>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:7-91) Probab=99.92 E-value=4.2e-25 Score=167.02 Aligned_cols=84 Identities=27% Similarity=0.453 Sum_probs=63.8 Q ss_pred EEEEEEEEEEECCCCEEEEEEECCC-CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCC Q ss_conf 1189999998769935999981755-112667724653331542365045556686799998656553201355565663 Q gi|254780347|r 7 TDIGKIIAMTPIAKGMRLRVMTSYN-TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTF 85 (204) Q Consensus 7 ~~~G~V~~i~~~~~~~~l~i~~~~~-~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~~ 85 (204) |++|+|.++++.++++++.+++|.. ++.+.+|+|||||||||||+++. +++|+|+++|||+++|||+.|++|++ T Consensus 1 e~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvsLTV~~~~-----~~~f~v~i~~eTl~~T~l~~~~~G~~ 75 (85) T 1i8d_A 1 QGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEIN-----GNHVSFDLMKETLRITNLGDLKVGDW 75 (85) T ss_dssp CEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEE-----TTEEEEEEEHHHHHHSGGGGCCTTCE T ss_pred CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEEC-----CCEEEEECHHHHHHHHCCCCCCCCCE T ss_conf 7089999999769966999982840004477888799787980468972-----65478863377764412453356974 Q ss_pred CCCCCCCHHH Q ss_conf 1335432000 Q gi|254780347|r 86 INLERSVKLG 95 (204) Q Consensus 86 VNLE~a~~~g 95 (204) |||||||++. T Consensus 76 VNlE~~l~~~ 85 (85) T 1i8d_A 76 VNVERAAKFS 85 (85) T ss_dssp EEEEECCBTT T ss_pred EEECCCCCCC T ss_conf 6004452588 No 11 >>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:6-92) Probab=99.91 E-value=2.3e-25 Score=168.60 Aligned_cols=85 Identities=27% Similarity=0.384 Sum_probs=48.6 Q ss_pred EEEEEEEEEEEECCCC-EEEEEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCC Q ss_conf 7118999999876993-599998175511266772465333154236504555668679999865655320135556566 Q gi|254780347|r 6 VTDIGKIIAMTPIAKG-MRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGT 84 (204) Q Consensus 6 V~~~G~V~~i~~~~~~-~~l~i~~~~~~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~ 84 (204) |+++|+|.++++.++. .++.+.++..+..+.+|+|||||||||||+++. +++|.|+++|||+++|||+.|++|| T Consensus 1 V~~~g~I~~i~~~~~~~~~~~~~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~v~i~~eTl~~T~l~~~k~Gd 75 (87) T 1kzl_A 1 VEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFD-----RYHFTVGIAPESLRLTNLGQCKAGD 75 (87) T ss_dssp CCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEEC-----SSEEEEEECHHHHHHSSGGGCCTTC T ss_pred CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEEEECC-----CCEEEEEEHHHHHHHHHHCCCCCCC T ss_conf 07599999989768995899997674324477788799889998899768-----5479999838845465514466898 Q ss_pred CCCCCCCCHHH Q ss_conf 31335432000 Q gi|254780347|r 85 FINLERSVKLG 95 (204) Q Consensus 85 ~VNLE~a~~~g 95 (204) +|||||+|+++ T Consensus 76 ~VNlE~~l~~~ 86 (87) T 1kzl_A 76 PVNLERAVLSS 86 (87) T ss_dssp EEEEEECCCCS T ss_pred EECCCCCEECC T ss_conf 78535552178 No 12 >>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:6-92) Probab=99.91 E-value=2e-24 Score=163.10 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=81.8 Q ss_pred CCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCCEEEEE Q ss_conf 10011011100233137987513421121002357199823457877416854999984443301330024899674697 Q gi|254780347|r 107 IDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIE 186 (204) Q Consensus 107 Vd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd~VNiE 186 (204) ||++|+|.++++.+++....+..|+.+.+|+..|||||+|||||||+++.+++|.+++||||+++|||+.|++||+|||| T Consensus 1 V~~~g~I~~i~~~~~~~~~~~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~i~~eTl~~T~l~~~k~Gd~VNlE 80 (87) T 1kzl_A 1 VEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAGDPVNLE 80 (87) T ss_dssp CCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTTCEEEEE T ss_pred CCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEECCEEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCCCEECCC T ss_conf 07599999989768995899997674324477788799889998899768547999983884546551446689878535 Q ss_pred HHHHHH Q ss_conf 135889 Q gi|254780347|r 187 VDSMMR 192 (204) Q Consensus 187 ~D~l~k 192 (204) .|+++| T Consensus 81 ~~l~~~ 86 (87) T 1kzl_A 81 RAVLSS 86 (87) T ss_dssp ECCCCS T ss_pred CCEECC T ss_conf 552178 No 13 >>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:7-91) Probab=99.91 E-value=8.2e-25 Score=165.32 Aligned_cols=83 Identities=27% Similarity=0.326 Sum_probs=80.5 Q ss_pred CCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCCEEEEEH Q ss_conf 00110111002331379875134211210023571998234578774168549999844433013300248996746971 Q gi|254780347|r 108 DGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIEV 187 (204) Q Consensus 108 d~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd~VNiE~ 187 (204) +++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|.+++||||+++|||+.+++||+||||. T Consensus 1 e~~g~I~~i~~~~~~~~~~i~~~~~~~~~i~~~~SIavnGvsLTV~~~~~~~f~v~i~~eTl~~T~l~~~~~G~~VNlE~ 80 (85) T 1i8d_A 1 QGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVER 80 (85) T ss_dssp CEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTCEEEEEE T ss_pred CCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCEEEEEEEECCCEEEEECHHHHHHHHCCCCCCCCCEEEECC T ss_conf 70899999997699669999828400044778887997879804689726547886337776441245335697460044 Q ss_pred HHH Q ss_conf 358 Q gi|254780347|r 188 DSM 190 (204) Q Consensus 188 D~l 190 (204) ++. T Consensus 81 ~l~ 83 (85) T 1i8d_A 81 AAK 83 (85) T ss_dssp CCB T ss_pred CCC T ss_conf 525 No 14 >>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:1-5,A:93-186) Probab=99.85 E-value=1.5e-21 Score=146.29 Aligned_cols=97 Identities=32% Similarity=0.517 Sum_probs=91.3 Q ss_pred HHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCC-CCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCC Q ss_conf 000004764245401001101110023313798751342-1121002357199823457877416854999984443301 Q gi|254780347|r 93 KLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEE 171 (204) Q Consensus 93 ~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~-~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~ 171 (204) --|-|+|||||||||||+++|++.++.+++.++.++.|+ .+.+|+++||+||+||.|||+..+.+..|++..|.+|.++ T Consensus 2 ~~~~r~GGHfvqGHVd~t~eIVekk~Dg~sirf~vk~~dp~~l~y~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~qsk 81 (99) T 1kzl_A 2 FTGLRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSK 81 (99) T ss_dssp BCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTT T ss_pred CCCCEECCEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEHHHHCCEEECCEEEEEEEEEEEEEECCCEEEEEEEHHHHHH T ss_conf 88318677467998106899999984499637999951012332332302089850489998662998999997788654 Q ss_pred CCHHHCCCCCEEEEEHHH Q ss_conf 330024899674697135 Q gi|254780347|r 172 TTWKMHKVGDLINIEVDS 189 (204) Q Consensus 172 T~l~~~k~Gd~VNiE~D~ 189 (204) -..+...+||.||+|.|. T Consensus 82 ~i~a~~NV~~~~~~~vdQ 99 (99) T 1kzl_A 82 VIMAKKNVGDLVNVEVDQ 99 (99) T ss_dssp SGGGGCCTTCEEEEEECT T ss_pred CHHCCCCCCCEEEEEEHH T ss_conf 410037789999984503 No 15 >>1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} (A:1-6,A:92-213) Probab=99.15 E-value=9.4e-11 Score=83.08 Aligned_cols=85 Identities=26% Similarity=0.332 Sum_probs=66.8 Q ss_pred CCCEEEEEE------------EEEEEEEECCCCEEEEEEE--CCCCCC-CCCCCEEEECCEEEEEEEECCCCCCCCEEEE Q ss_conf 945337118------------9999998769935999981--755112-6677246533315423650455566867999 Q gi|254780347|r 1 MFTGIVTDI------------GKIIAMTPIAKGMRLRVMT--SYNTSK-MKLGCSIAHAGICLTVVRLSEEHSVDNWYEV 65 (204) Q Consensus 1 MFtGIV~~~------------G~V~~i~~~~~~~~l~i~~--~~~~~~-l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~ 65 (204) ||||||+++ +.|.++-..++..++.++. +..+.- +-.| =|.+||++|||-+++ ...|.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~ 74 (128) T 1i8d_A 1 MFTGIVDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKG-FIGIDGISLTVGEVT-----PTRFCV 74 (128) T ss_dssp CBCSCCSCCSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTC-EEEETTEEEECCSBC-----SSEEEE T ss_pred CCCEECCCCCCCCEEEEECCEEEEEEEEECCCCEEEEEEEHHHHHHHHHEECC-EEEEEEEEEEEEEEC-----CCEEEE T ss_conf 95851355078627898672579999996489449999802556654303412-699810799999874-----988999 Q ss_pred EEEHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 98656553201355565663133543 Q gi|254780347|r 66 EVWAETNRITNIASWGIGTFINLERS 91 (204) Q Consensus 66 ~~~~ETl~~T~l~~l~~G~~VNLE~a 91 (204) .++||||.||+++..+.|.+||+|.- T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~i~ 100 (128) T 1i8d_A 75 HLIPETLERTTLGKKKLGARVNIEID 100 (128) T ss_dssp EECHHHHHHSSGGGCCTTCEEEEEEC T ss_pred EECHHHHHHCCCCCCCCCCEEEEEEE T ss_conf 98188675472013768998999384 No 16 >>1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} (A:1-5,A:93-186) Probab=98.43 E-value=2.4e-06 Score=57.25 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=70.7 Q ss_pred CCCEE----------EEEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEE Q ss_conf 94533----------71189999998769935999981755--1126677246533315423650455566867999986 Q gi|254780347|r 1 MFTGI----------VTDIGKIIAMTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVW 68 (204) Q Consensus 1 MFtGI----------V~~~G~V~~i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~ 68 (204) ||||+ |...+.|..-++..+.+|+.++.+.. ++-+-.-+-||.||.+||++.++ ++.|+.-.+ T Consensus 1 ~~~~~r~GGHfvqGHVd~t~eIVekk~Dg~sirf~vk~~dp~~l~y~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~ 75 (99) T 1kzl_A 1 MFTGLRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----DSTFSIMMI 75 (99) T ss_dssp CBCSCCSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC-----SSCEEEEEC T ss_pred CCCCCEECCEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEHHHHCCEEECCEEEEEEEEEEEEEEC-----CCEEEEEEE T ss_conf 988318677467998106899999984499637999951012332332302089850489998662-----998999997 Q ss_pred HHHHHHCCCCCCCCCCCCCCCC Q ss_conf 5655320135556566313354 Q gi|254780347|r 69 AETNRITNIASWGIGTFINLER 90 (204) Q Consensus 69 ~ETl~~T~l~~l~~G~~VNLE~ 90 (204) .-|-++--..-..+||.||+|. T Consensus 76 ~~~qsk~i~a~~NV~~~~~~~v 97 (99) T 1kzl_A 76 SYTQSKVIMAKKNVGDLVNVEV 97 (99) T ss_dssp HHHHTTSGGGGCCTTCEEEEEE T ss_pred HHHHHHCHHCCCCCCCEEEEEE T ss_conf 7886544100377899999845 No 17 >>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A (A:37-109) Probab=62.04 E-value=12 Score=18.15 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=30.7 Q ss_pred EEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEECC Q ss_conf 98769935999981755--112667724653331542365045 Q gi|254780347|r 15 MTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLSE 55 (204) Q Consensus 15 i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~~ 55 (204) +.+...+.++.+..... ..++++|+++|+|--.+++.++=. T Consensus 17 IVk~s~g~~~~V~v~~~vd~~~Lkpg~rVal~~~s~~Iv~vLp 59 (73) T 2wg5_A 17 VVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLP 59 (73) T ss_dssp EEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC T ss_pred EEEECCCCEEEEEECCCCCHHHCCCCCEEEECCCCCEEEEECC T ss_conf 9995799889998216769889899899988677417786489 No 18 >>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} (A:1-268,A:330-460) Probab=54.80 E-value=1.5 Score=23.45 Aligned_cols=42 Identities=31% Similarity=0.332 Sum_probs=25.2 Q ss_pred CCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCC Q ss_conf 3133543200000476424540100110111002331379875134211 Q gi|254780347|r 85 FINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHNL 133 (204) Q Consensus 85 ~VNLE~a~~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~ 133 (204) +|||||+|.+|.- -+.-.| |+|+.|.-.+++.-.-|.++..+ T Consensus 190 rVnLERSLqfG~~-----GsATPD--AKIVRISLDDdstGAGIhLNd~L 231 (399) T 1xez_A 190 RVNLERSLQYGIV-----GSATPD--AKIVRISLDDDSTGAGIHLNDQL 231 (399) T ss_dssp EEEEEEEBCBSST-----TSCBCC--EEEEEEEECTTTCCCEEECCSSC T ss_pred EEEEEEEECCCCC-----CCCCCC--CEEEEEEECCCCCCCCEEECHHH T ss_conf 9866762012565-----777888--44899995588887735861010 No 19 >>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii} (A:18-85) Probab=45.08 E-value=23 Score=16.50 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=30.4 Q ss_pred EEEECCCCEEEEEEECCC--CCCCCCCCEEEECCEEEEEEEEC Q ss_conf 998769935999981755--11266772465333154236504 Q gi|254780347|r 14 AMTPIAKGMRLRVMTSYN--TSKMKLGCSIAHAGICLTVVRLS 54 (204) Q Consensus 14 ~i~~~~~~~~l~i~~~~~--~~~l~~G~SIavnGvCLTV~~i~ 54 (204) .+-+...+.++.+..... .+++++|+++|+|--.+++..+= T Consensus 16 ~IVkss~g~~~~V~v~~~vd~~~Lkpg~rVaL~~~s~~Iv~vL 58 (68) T 3h43_A 16 VVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVL 58 (68) T ss_dssp EEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEEC T ss_pred EEEEECCCCEEEEEECCCCCHHHCCCCCEEEECCCCEEEEEEC T ss_conf 9999679998999806987978989999999987460845775 No 20 >>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:1-103) Probab=44.31 E-value=23 Score=16.43 Aligned_cols=81 Identities=6% Similarity=0.042 Sum_probs=49.3 Q ss_pred EEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEEC--C------EEEEEEEECCCCCCCCEEEEEEE--HHHHHHCCC Q ss_conf 8999999876-99359999817551126677246533--3------15423650455566867999986--565532013 Q gi|254780347|r 9 IGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHA--G------ICLTVVRLSEEHSVDNWYEVEVW--AETNRITNI 77 (204) Q Consensus 9 ~G~V~~i~~~-~~~~~l~i~~~~~~~~l~~G~SIavn--G------vCLTV~~i~~~~~~~~~f~~~~~--~ETl~~T~l 77 (204) .++|.++++. ++..++++..+........|..|.+. + -.+|+.....+ ++.++|.+- +.-.--.-| T Consensus 7 ~~~V~~~~~~~~~v~~~~l~~~~~~~~~~pGQ~i~i~~~~~~~~~~r~ys~~s~~~~---~~~l~~~vk~~~~G~~s~~l 83 (103) T 1ep3_B 7 MMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKR---AKTCTILYRIGDETTGTYKL 83 (103) T ss_dssp EEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETT---TTEEEEEEECCCTTSHHHHH T ss_pred CEEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCC---CCEEEEEEEECCCCCHHHHH T ss_conf 229999999459989999988883467899950899947899288998895624899---98899999988997578998 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 555656631335432 Q gi|254780347|r 78 ASWGIGTFINLERSV 92 (204) Q Consensus 78 ~~l~~G~~VNLE~a~ 92 (204) .+++.||.|.+.-+. T Consensus 84 ~~l~~Gd~i~i~gP~ 98 (103) T 1ep3_B 84 SKLESGAKVDVMGPL 98 (103) T ss_dssp HTCCTTCEEEEEEEE T ss_pred HCCCCCCEEEEECCC T ss_conf 548998999997465 No 21 >>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (G:) Probab=39.90 E-value=12 Score=18.18 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.8 Q ss_pred EHHHHHHHHHHHHCCCC Q ss_conf 71358899999860233 Q gi|254780347|r 186 EVDSMMRYIARLYALNT 202 (204) Q Consensus 186 E~D~l~kyv~r~~~~~~ 202 (204) +.|+|.||++|-|+... T Consensus 103 ~~D~LMKYiYkG~~~p~ 119 (152) T 3dwl_G 103 EIDNIVNFIYRGLANPQ 119 (152) T ss_dssp HHHHHHHHHHHHTTC-- T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 42466999987136888 No 22 >>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (G:) Probab=37.75 E-value=16 Score=17.29 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.5 Q ss_pred EHHHHHHHHHHHHCCCCC Q ss_conf 713588999998602335 Q gi|254780347|r 186 EVDSMMRYIARLYALNTS 203 (204) Q Consensus 186 E~D~l~kyv~r~~~~~~~ 203 (204) +.|+|.||++|-|+.... T Consensus 102 ~~D~LMKYiYkG~~~p~~ 119 (151) T 1k8k_G 102 GVDLLMKYIYKGFESPSD 119 (151) T ss_dssp HHHHHHHHHHHHHTSCCT T ss_pred HHHHHHHHHHHHCCCCCC T ss_conf 889999999974158886 No 23 >>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:1-99) Probab=33.77 E-value=34 Score=15.44 Aligned_cols=77 Identities=8% Similarity=0.102 Sum_probs=44.0 Q ss_pred EEEEEEEEE-CCCCEEEEEEECCCCCCCCCCCEEE----ECCE----EEEEEEECCCCCCCCEEEEEEE--HHHHHHCCC Q ss_conf 899999987-6993599998175511266772465----3331----5423650455566867999986--565532013 Q gi|254780347|r 9 IGKIIAMTP-IAKGMRLRVMTSYNTSKMKLGCSIA----HAGI----CLTVVRLSEEHSVDNWYEVEVW--AETNRITNI 77 (204) Q Consensus 9 ~G~V~~i~~-~~~~~~l~i~~~~~~~~l~~G~SIa----vnGv----CLTV~~i~~~~~~~~~f~~~~~--~ETl~~T~l 77 (204) ..+|.++++ .++..+++++.+.. .+...|+-+. .+|- -.|+.+... ++.+++.+- +.-.-..-| T Consensus 5 ~~~v~~~~~~~~~~~~~~~~~~~~-~~~~pGQ~v~l~~~~~~~~~~r~ysi~s~~~----~~~~~~~vk~~~~G~~t~~l 79 (99) T 2qdx_A 5 TERVLSVHHWNDTLFSFKTTRNPG-LRFKTGQFVMIGLEVDGRPLMRAYSIASPNY----EEHLEFFSIKVPDGPLTSRL 79 (99) T ss_dssp EEEEEEEEEEETTEEEEEEECCTT-CCCCTTCEEEEEEEETTEEEEEEEECCSCTT----SSEEEEEEECCTTCTTHHHH T ss_pred EEEEEEEEECCCCEEEEEECCCCC-CCCCCCCEEEEEEECCCEEEEEECCCCCCCC----CCCEEEEEEEEEECCCCCEE T ss_conf 689999884699879999788998-9899993599996119907640000025556----66326789998503531011 Q ss_pred CCCCCCCCCCCCC Q ss_conf 5556566313354 Q gi|254780347|r 78 ASWGIGTFINLER 90 (204) Q Consensus 78 ~~l~~G~~VNLE~ 90 (204) ..+++||.|.+.+ T Consensus 80 ~~l~~Gd~i~i~~ 92 (99) T 2qdx_A 80 QHLKEGDELMVSR 92 (99) T ss_dssp TTCCTTCEEEECS T ss_pred CCCCCCCEEEEEC T ss_conf 0235674136625 No 24 >>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} (A:114-160) Probab=23.88 E-value=28 Score=15.94 Aligned_cols=16 Identities=25% Similarity=0.546 Sum_probs=13.8 Q ss_pred EHHHHHHHHHHHHCCC Q ss_conf 7135889999986023 Q gi|254780347|r 186 EVDSMMRYIARLYALN 201 (204) Q Consensus 186 E~D~l~kyv~r~~~~~ 201 (204) |+|++..|+|..+..+ T Consensus 29 EfDifinYIE~Yl~~K 44 (47) T 2ilk_A 29 EFDIFINYIEAYMTMK 44 (47) T ss_dssp THHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999999999987 No 25 >>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A (A:102-189) Probab=23.40 E-value=53 Score=14.35 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=49.2 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCC---CCEECCCCEEEEEEEEEEEEEE Q ss_conf 5565663133543200000476424540100110111002331379875134211---2100235719982345787741 Q gi|254780347|r 79 SWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHNL---EQFIAVKGSVCLNGVSLTVNLV 155 (204) Q Consensus 79 ~l~~G~~VNLE~a~~~g~~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~---~~~l~~KgsI~idGvSLTV~~~ 155 (204) .|..-.+=+.++.++.||++.|--+.|.|+.+..+ .-+|.+|... ..++++.|+-++|=+=+.+-+- T Consensus 10 ~LD~ek~W~F~p~vk~Gd~V~~GdilG~V~Et~~i----------~HkIMvPp~~~G~v~~i~~~G~Ytv~d~I~~ie~~ 79 (88) T 3i4l_A 10 ALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSII----------VHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTP 79 (88) T ss_dssp SSCSSSCEEEEECCCTTCEECTTCEEEEEECSSSC----------EEEEECCTTCCEEEEEECCSEEECTTSCCEEEECT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECC T ss_conf 77744345546433458800157613657554543----------44334688767726884267886611045443136 Q ss_pred CCCEEE Q ss_conf 685499 Q gi|254780347|r 156 GKNFFD 161 (204) Q Consensus 156 ~~~~f~ 161 (204) +....+ T Consensus 80 ~G~~~~ 85 (88) T 3i4l_A 80 SGEIKE 85 (88) T ss_dssp TCCEEE T ss_pred CCCCCC T ss_conf 666555 No 26 >>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:137-236) Probab=22.67 E-value=54 Score=14.26 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=34.0 Q ss_pred EEEEEECCCCCCCCCCCEEEECC--EEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCC Q ss_conf 99998175511266772465333--15423650455566867999986565532013555656631335 Q gi|254780347|r 23 RLRVMTSYNTSKMKLGCSIAHAG--ICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTFINLE 89 (204) Q Consensus 23 ~l~i~~~~~~~~l~~G~SIavnG--vCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l~~G~~VNLE 89 (204) ++.+..+..+.++++|+.|.+|. +.|.|.++++. .+...+ ++=+.++.+.-|||- T Consensus 39 ~I~v~~~~l~~~v~~G~~IlidDG~i~l~V~~v~~~-----~i~~~v-------~~~G~L~s~KgvnlP 95 (100) T 3gr4_A 39 ILWLDYKNICKVVEVGSKIYVDDGLISLQVKQKGAD-----FLVTEV-------ENGGSLGSKKGVNLP 95 (100) T ss_dssp EEEBSCTTHHHHCCTTCEEEETTTTEEEEEEEECSS-----EEEEEE-------EECEEECSSCBEECT T ss_pred EEEEECCCCHHHCCCCCHHEEECCCEEEEEEECCCC-----CEEEEE-------ECCCEECCCCCCCEE T ss_conf 454200013000343102101056316887403677-----127998-------148374666676410 No 27 >>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} (A:316-373) Probab=21.83 E-value=21 Score=16.74 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=15.6 Q ss_pred CCCCCCCCCCCCCCCCCHHHH Q ss_conf 135556566313354320000 Q gi|254780347|r 76 NIASWGIGTFINLERSVKLGD 96 (204) Q Consensus 76 ~l~~l~~G~~VNLE~a~~~g~ 96 (204) ++..-+.|++||||+||-.-+ T Consensus 9 T~~G~~eG~Fv~l~~AMH~~~ 29 (58) T 2cvc_A 9 TVNGTADSKFVQLEKAMHQPD 29 (58) T ss_dssp CTTCCGGGTTCCHHHHHHCTT T ss_pred CCCCCCCCCCCCCCCCCCCCC T ss_conf 756667765422354321356 Done!