Query         gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs    131 out of 2487
Neff          5.8 
Searched_HMMs 13730
Date          Wed Jun  1 02:55:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780347.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1kzla2 b.43.4.3 (A:93-202) Ri 100.0 2.6E-41 1.4E-45  259.5   9.2  108   97-204     1-109 (110)
  2 d1i8da2 b.43.4.3 (A:94-206) Ri 100.0 5.4E-38   4E-42  240.1   7.6  105   98-202     1-110 (113)
  3 d1i8da1 b.43.4.3 (A:1-93) Ribo 100.0 4.5E-32 3.3E-36  205.5  10.4   92    1-97      1-93  (93)
  4 d1kzla1 b.43.4.3 (A:1-92) Ribo 100.0 2.6E-30 1.9E-34  195.2   9.6   90    1-95      1-91  (92)
  5 d1i8da1 b.43.4.3 (A:1-93) Ribo  99.9 1.5E-27 1.1E-31  179.1   7.6   88  102-189     1-88  (93)
  6 d1kzla1 b.43.4.3 (A:1-92) Ribo  99.9 3.6E-27 2.6E-31  176.8   5.9   90  102-192     1-91  (92)
  7 d1i8da2 b.43.4.3 (A:94-206) Ri  99.9 6.3E-25 4.6E-29  163.7   9.4   86    1-91      5-92  (113)
  8 d1kzla2 b.43.4.3 (A:93-202) Ri  99.9 6.2E-24 4.5E-28  157.9   9.9   88    1-93      6-95  (110)
  9 d1ep3b1 b.43.4.2 (B:2-102) Dih  64.7     4.3 0.00031   18.4   6.4   82    7-91      4-96  (101)
 10 d1k8kg_ a.118.13.1 (G:) Arp2/3  32.1     9.4 0.00068   16.4   1.6   17  186-202    94-110 (143)
 11 d2vgba1 b.58.1.1 (A:160-261) P  21.0      24  0.0017   14.1   3.9   39  124-163    40-80  (102)

No 1  
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=2.6e-41  Score=259.54  Aligned_cols=108  Identities=30%  Similarity=0.515  Sum_probs=103.7

Q ss_pred             CCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC-CCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHH
Q ss_conf             0476424540100110111002331379875134-211210023571998234578774168549999844433013300
Q gi|254780347|r   97 RLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWK  175 (204)
Q Consensus        97 ~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~-~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~  175 (204)
                      |+|||+||||||++|+|+++++.++++.+++.+| +.+.+|++.|||||+|||||||+++.+++|++++|||||++|||+
T Consensus         1 r~~GH~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~lipETl~~Tnl~   80 (110)
T d1kzla2           1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMA   80 (110)
T ss_dssp             CSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGG
T ss_pred             CCCEEEEEEEECEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEEEEHHHHHHHCCCC
T ss_conf             94304350795689999999987985213563250555331001214774783899972569789998769987656000


Q ss_pred             HCCCCCEEEEEHHHHHHHHHHHHCCCCCC
Q ss_conf             24899674697135889999986023359
Q gi|254780347|r  176 MHKVGDLINIEVDSMMRYIARLYALNTSQ  204 (204)
Q Consensus       176 ~~k~Gd~VNiE~D~l~kyv~r~~~~~~~~  204 (204)
                      .+++||+||||+|+||||++|+++.+.++
T Consensus        81 ~~~~G~~VNLE~D~lak~i~~~~~~~~~~  109 (110)
T d1kzla2          81 KKNVGDLVNVEVDQIGKYTEKLVEAHIAD  109 (110)
T ss_dssp             GCCTTCEEEEEECTHHHHHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEEHHHHHHHHHHHHHHCCC
T ss_conf             17799989982166999999998765269


No 2  
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=5.4e-38  Score=240.13  Aligned_cols=105  Identities=33%  Similarity=0.454  Sum_probs=97.1

Q ss_pred             CCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC-CCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHH
Q ss_conf             476424540100110111002331379875134-2112100235719982345787741685499998444330133002
Q gi|254780347|r   98 LDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKM  176 (204)
Q Consensus        98 lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~-~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~  176 (204)
                      +|||+||||||++|+|.++++.+++..+++.+| +.+.+|+..|||||+|||||||+++.+++|++++|||||++|||+.
T Consensus         1 igGH~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~li~ETl~~T~l~~   80 (113)
T d1i8da2           1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGK   80 (113)
T ss_dssp             CSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGG
T ss_pred             CCCEEEEEEECEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEEEEEHHHHHHCCCCC
T ss_conf             98501606968799999999738834888874137776554323237615725887633487899996789865491124


Q ss_pred             CCCCCEEEEEHHHHHHH----HHHHHCCCC
Q ss_conf             48996746971358899----999860233
Q gi|254780347|r  177 HKVGDLINIEVDSMMRY----IARLYALNT  202 (204)
Q Consensus       177 ~k~Gd~VNiE~D~l~ky----v~r~~~~~~  202 (204)
                      |++||+||||+|+++||    ++|+++.++
T Consensus        81 ~~~G~~VNlE~D~~~k~i~~~~~~~~~~~~  110 (113)
T d1i8da2          81 KKLGARVNIEIDPQTQAVVDTVERVLAARE  110 (113)
T ss_dssp             CCTTCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf             768998899383515799999999875514


No 3  
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=4.5e-32  Score=205.51  Aligned_cols=92  Identities=33%  Similarity=0.536  Sum_probs=87.1

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             94533711899999987699359999817551-12667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      ||||||+++|+|.++++.++++++.++.|..+ ..+.+|+|||||||||||++++     +++|.|+++|||+++|||+.
T Consensus         1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~-----~~~f~~~ii~eTl~~T~l~~   75 (93)
T d1i8da1           1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEIN-----GNHVSFDLMKETLRITNLGD   75 (93)
T ss_dssp             CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEE-----TTEEEEEEEHHHHHHSGGGG
T ss_pred             CCCEEECEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECC-----CCCEEEEEEHHHHHHCCHHH
T ss_conf             9684234499999999889949999998978863055687699777889999627-----75189999678831172201


Q ss_pred             CCCCCCCCCCCCCHHHHC
Q ss_conf             565663133543200000
Q gi|254780347|r   80 WGIGTFINLERSVKLGDR   97 (204)
Q Consensus        80 l~~G~~VNLE~a~~~g~~   97 (204)
                      |++|++||||||||+||+
T Consensus        76 ~~~G~~VNlErslk~gde   93 (93)
T d1i8da1          76 LKVGDWVNVERAAKFSDE   93 (93)
T ss_dssp             CCTTCEEEEEECCBTTSC
T ss_pred             CCCCCEEEECCCCCCCCC
T ss_conf             668999997848768898


No 4  
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.96  E-value=2.6e-30  Score=195.21  Aligned_cols=90  Identities=31%  Similarity=0.475  Sum_probs=83.1

Q ss_pred             CCCEEEEEEEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC
Q ss_conf             945337118999999876-9935999981755112667724653331542365045556686799998656553201355
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS   79 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~-~~~~~l~i~~~~~~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~   79 (204)
                      |||||||++|+|.++++. +.++++.+..+..++++.+|+|||||||||||++++     +++|.|+++|||+++|||+.
T Consensus         1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~~~lipeTl~~T~l~~   75 (92)
T d1kzla1           1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFD-----RYHFTVGIAPESLRLTNLGQ   75 (92)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEEC-----SSEEEEEECHHHHHHSSGGG
T ss_pred             CCCCCCCEEEEEEEEEECCCCEEEEEEECCHHHHHCCCCCEEEECCEEEEEEEEC-----CCEEEEEEEHHHCCCCCHHH
T ss_conf             9786508399999999879995999998707764263476698566777767611-----10499999737615642221


Q ss_pred             CCCCCCCCCCCCCHHH
Q ss_conf             5656631335432000
Q gi|254780347|r   80 WGIGTFINLERSVKLG   95 (204)
Q Consensus        80 l~~G~~VNLE~a~~~g   95 (204)
                      |++|++|||||||++.
T Consensus        76 ~~~G~~VNlE~sl~a~   91 (92)
T d1kzla1          76 CKAGDPVNLERAVLSS   91 (92)
T ss_dssp             CCTTCEEEEEECCCCS
T ss_pred             CCCCCEEEECCCCCCC
T ss_conf             7679999937125588


No 5  
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=99.94  E-value=1.5e-27  Score=179.10  Aligned_cols=88  Identities=26%  Similarity=0.358  Sum_probs=84.9

Q ss_pred             EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC
Q ss_conf             24540100110111002331379875134211210023571998234578774168549999844433013300248996
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD  181 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd  181 (204)
                      +.+||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|++++||||+++|||+.+++|+
T Consensus         1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~ii~eTl~~T~l~~~~~G~   80 (93)
T d1i8da1           1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD   80 (93)
T ss_dssp             CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTC
T ss_pred             CCCEEECEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCCCCEEEEEEHHHHHHCCHHHCCCCC
T ss_conf             96842344999999998899499999989788630556876997778899996277518999967883117220166899


Q ss_pred             EEEEEHHH
Q ss_conf             74697135
Q gi|254780347|r  182 LINIEVDS  189 (204)
Q Consensus       182 ~VNiE~D~  189 (204)
                      +||||.-+
T Consensus        81 ~VNlErsl   88 (93)
T d1i8da1          81 WVNVERAA   88 (93)
T ss_dssp             EEEEEECC
T ss_pred             EEEECCCC
T ss_conf             99978487


No 6  
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.93  E-value=3.6e-27  Score=176.85  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=81.9

Q ss_pred             EEEECCCCHHHHHHHCCCC-CEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCC
Q ss_conf             2454010011011100233-137987513421121002357199823457877416854999984443301330024899
Q gi|254780347|r  102 LVSGHIDGTVEILFLDFIG-DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG  180 (204)
Q Consensus       102 ~v~GhVd~~~~i~~i~~~~-~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~G  180 (204)
                      +.+||||++|+|.++++.+ +++.+++..|+ +.+++..|||||+|||||||+++.+++|++++|||||++|||+.+++|
T Consensus         1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~~-~~~~i~~g~SIavnGvcLTV~~~~~~~f~~~lipeTl~~T~l~~~~~G   79 (92)
T d1kzla1           1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQ-ILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAG   79 (92)
T ss_dssp             CBCSCCCEEEEEEEEEEETTTEEEEEEECGG-GCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTT
T ss_pred             CCCCCCCEEEEEEEEEECCCCEEEEEEECCH-HHHHCCCCCEEEECCEEEEEEEECCCEEEEEEEHHHCCCCCHHHCCCC
T ss_conf             9786508399999999879995999998707-764263476698566777767611104999997376156422217679


Q ss_pred             CEEEEEHHHHHH
Q ss_conf             674697135889
Q gi|254780347|r  181 DLINIEVDSMMR  192 (204)
Q Consensus       181 d~VNiE~D~l~k  192 (204)
                      |+||||.|+++.
T Consensus        80 ~~VNlE~sl~a~   91 (92)
T d1kzla1          80 DPVNLERAVLSS   91 (92)
T ss_dssp             CEEEEEECCCCS
T ss_pred             CEEEECCCCCCC
T ss_conf             999937125588


No 7  
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]}
Probab=99.91  E-value=6.3e-25  Score=163.68  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECC-CC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCC
Q ss_conf             945337118999999876993599998175-51-1266772465333154236504555668679999865655320135
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSY-NT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIA   78 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~-~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~   78 (204)
                      |++|+|+++|+|.++.+.++..++.+..+. .+ ..+.+|+|||||||||||+++.     +++|+|+++|||+++|||+
T Consensus         5 ~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~v~li~ETl~~T~l~   79 (113)
T d1i8da2           5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT-----PTRFCVHLIPETLERTTLG   79 (113)
T ss_dssp             CBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBC-----SSEEEEEECHHHHHHSSGG
T ss_pred             EEEEEECEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHEEECCCCEEEEEEEC-----CCEEEEEEEHHHHHHCCCC
T ss_conf             16069687999999997388348888741377765543232376157258876334-----8789999678986549112


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             5565663133543
Q gi|254780347|r   79 SWGIGTFINLERS   91 (204)
Q Consensus        79 ~l~~G~~VNLE~a   91 (204)
                      .|++|++||||--
T Consensus        80 ~~~~G~~VNlE~D   92 (113)
T d1i8da2          80 KKKLGARVNIEID   92 (113)
T ss_dssp             GCCTTCEEEEEEC
T ss_pred             CCCCCCEEEEEEE
T ss_conf             4768998899383


No 8  
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.90  E-value=6.2e-24  Score=157.90  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=78.4

Q ss_pred             CCCEEEEEEEEEEEEEECCCCEEEEEEECC-CC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCC
Q ss_conf             945337118999999876993599998175-51-1266772465333154236504555668679999865655320135
Q gi|254780347|r    1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSY-NT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIA   78 (204)
Q Consensus         1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~-~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~   78 (204)
                      |-+|+|+++|+|.++++.++++++.+.++. .+ ..+..|+|||||||||||++++     +++|+|+++|||+++|||+
T Consensus         6 ~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~-----~~~f~v~lipETl~~Tnl~   80 (110)
T d1kzla2           6 FVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----DSTFSIMMISYTQSKVIMA   80 (110)
T ss_dssp             CBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC-----SSCEEEEECHHHHTTSGGG
T ss_pred             EEEEEECEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHEEECCCCEEEEEEEC-----CCEEEEEEHHHHHHHCCCC
T ss_conf             35079568999999998798521356325055533100121477478389997256-----9789998769987656000


Q ss_pred             CCCCCCCCCCCCCCH
Q ss_conf             556566313354320
Q gi|254780347|r   79 SWGIGTFINLERSVK   93 (204)
Q Consensus        79 ~l~~G~~VNLE~a~~   93 (204)
                      .|++|++||||+.+-
T Consensus        81 ~~~~G~~VNLE~D~l   95 (110)
T d1kzla2          81 KKNVGDLVNVEVDQI   95 (110)
T ss_dssp             GCCTTCEEEEEECTH
T ss_pred             CCCCCCEEEEEEHHH
T ss_conf             177999899821669


No 9  
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=64.75  E-value=4.3  Score=18.44  Aligned_cols=82  Identities=6%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             EEEEEEEEEEECC-CCEEEEEEECCCCCCCCCCCEEEE----CC----EEEEEEEECCCCCCCCEEEEE--EEHHHHHHC
Q ss_conf             1189999998769-935999981755112667724653----33----154236504555668679999--865655320
Q gi|254780347|r    7 TDIGKIIAMTPIA-KGMRLRVMTSYNTSKMKLGCSIAH----AG----ICLTVVRLSEEHSVDNWYEVE--VWAETNRIT   75 (204)
Q Consensus         7 ~~~G~V~~i~~~~-~~~~l~i~~~~~~~~l~~G~SIav----nG----vCLTV~~i~~~~~~~~~f~~~--~~~ETl~~T   75 (204)
                      |...+|.+.++.. +-+++.++.+......+.|.=+.+    +|    -+.++.+...+.   ..+++.  ..+.-....
T Consensus         4 ~~~~~V~~~~~~~~~i~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~---~~i~~~i~~~~~g~~t~   80 (101)
T d1ep3b1           4 QEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRA---KTCTILYRIGDETTGTY   80 (101)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETTT---TEEEEEEECCCTTSHHH
T ss_pred             CEEEEEEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEECCCCCCEEECCCEEEECCCCC---CEEEEEEEECCCCHHHH
T ss_conf             736899998893499799999878765236999268887057862761022462079987---28999973227503547


Q ss_pred             CCCCCCCCCCCCCCCC
Q ss_conf             1355565663133543
Q gi|254780347|r   76 NIASWGIGTFINLERS   91 (204)
Q Consensus        76 ~l~~l~~G~~VNLE~a   91 (204)
                      -+..+++||.|++.-|
T Consensus        81 ~l~~l~~Gd~v~v~GP   96 (101)
T d1ep3b1          81 KLSKLESGAKVDVMGP   96 (101)
T ss_dssp             HHHTCCTTCEEEEEEE
T ss_pred             HHHHCCCCCEEEEECC
T ss_conf             8870899999999566


No 10 
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=32.11  E-value=9.4  Score=16.44  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=13.9

Q ss_pred             EHHHHHHHHHHHHCCCC
Q ss_conf             71358899999860233
Q gi|254780347|r  186 EVDSMMRYIARLYALNT  202 (204)
Q Consensus       186 E~D~l~kyv~r~~~~~~  202 (204)
                      +.|+|.||++|-|+...
T Consensus        94 ~~D~LMKYiYkG~~~p~  110 (143)
T d1k8kg_          94 GVDLLMKYIYKGFESPS  110 (143)
T ss_dssp             HHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHCCCCC
T ss_conf             67899999987315888


No 11 
>d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.97  E-value=24  Score=14.06  Aligned_cols=39  Identities=18%  Similarity=0.373  Sum_probs=16.9

Q ss_pred             EEEEECCCCCCCEECCCCEEEEEE--EEEEEEEECCCEEEEE
Q ss_conf             987513421121002357199823--4578774168549999
Q gi|254780347|r  124 YCRLSLPHNLEQFIAVKGSVCLNG--VSLTVNLVGKNFFDVL  163 (204)
Q Consensus       124 ~~~i~~~~~~~~~l~~KgsI~idG--vSLTV~~~~~~~f~v~  163 (204)
                      .+.+.+|. +.+.+.+...|-+|-  +.|+|.++.++.+.+-
T Consensus        40 ~i~v~~~~-l~~~v~~G~~IliDDG~i~l~V~~v~~~~i~~~   80 (102)
T d2vgba1          40 TVWVDYPN-IVRVVPVGGRIYIDDGLISLVVQKIGPEGLVTQ   80 (102)
T ss_dssp             EEEBSCTT-HHHHSCTTCEEEETTTTEEEEEEEECSSEEEEE
T ss_pred             EEEECHHH-HHHHCCCCCEEEECCCCEEEEEEECCCCEEEEE
T ss_conf             99856089-753137777899858816899985378879999


Done!