Query gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 204 No_of_seqs 131 out of 2487 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 02:55:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780347.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1kzla2 b.43.4.3 (A:93-202) Ri 100.0 2.6E-41 1.4E-45 259.5 9.2 108 97-204 1-109 (110) 2 d1i8da2 b.43.4.3 (A:94-206) Ri 100.0 5.4E-38 4E-42 240.1 7.6 105 98-202 1-110 (113) 3 d1i8da1 b.43.4.3 (A:1-93) Ribo 100.0 4.5E-32 3.3E-36 205.5 10.4 92 1-97 1-93 (93) 4 d1kzla1 b.43.4.3 (A:1-92) Ribo 100.0 2.6E-30 1.9E-34 195.2 9.6 90 1-95 1-91 (92) 5 d1i8da1 b.43.4.3 (A:1-93) Ribo 99.9 1.5E-27 1.1E-31 179.1 7.6 88 102-189 1-88 (93) 6 d1kzla1 b.43.4.3 (A:1-92) Ribo 99.9 3.6E-27 2.6E-31 176.8 5.9 90 102-192 1-91 (92) 7 d1i8da2 b.43.4.3 (A:94-206) Ri 99.9 6.3E-25 4.6E-29 163.7 9.4 86 1-91 5-92 (113) 8 d1kzla2 b.43.4.3 (A:93-202) Ri 99.9 6.2E-24 4.5E-28 157.9 9.9 88 1-93 6-95 (110) 9 d1ep3b1 b.43.4.2 (B:2-102) Dih 64.7 4.3 0.00031 18.4 6.4 82 7-91 4-96 (101) 10 d1k8kg_ a.118.13.1 (G:) Arp2/3 32.1 9.4 0.00068 16.4 1.6 17 186-202 94-110 (143) 11 d2vgba1 b.58.1.1 (A:160-261) P 21.0 24 0.0017 14.1 3.9 39 124-163 40-80 (102) No 1 >d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=100.00 E-value=2.6e-41 Score=259.54 Aligned_cols=108 Identities=30% Similarity=0.515 Sum_probs=103.7 Q ss_pred CCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC-CCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHH Q ss_conf 0476424540100110111002331379875134-211210023571998234578774168549999844433013300 Q gi|254780347|r 97 RLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWK 175 (204) Q Consensus 97 ~lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~-~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~ 175 (204) |+|||+||||||++|+|+++++.++++.+++.+| +.+.+|++.|||||+|||||||+++.+++|++++|||||++|||+ T Consensus 1 r~~GH~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~~~~f~v~lipETl~~Tnl~ 80 (110) T d1kzla2 1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMA 80 (110) T ss_dssp CSSSCCBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEECSSCEEEEECHHHHTTSGGG T ss_pred CCCEEEEEEEECEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEEEEHHHHHHHCCCC T ss_conf 94304350795689999999987985213563250555331001214774783899972569789998769987656000 Q ss_pred HCCCCCEEEEEHHHHHHHHHHHHCCCCCC Q ss_conf 24899674697135889999986023359 Q gi|254780347|r 176 MHKVGDLINIEVDSMMRYIARLYALNTSQ 204 (204) Q Consensus 176 ~~k~Gd~VNiE~D~l~kyv~r~~~~~~~~ 204 (204) .+++||+||||+|+||||++|+++.+.++ T Consensus 81 ~~~~G~~VNLE~D~lak~i~~~~~~~~~~ 109 (110) T d1kzla2 81 KKNVGDLVNVEVDQIGKYTEKLVEAHIAD 109 (110) T ss_dssp GCCTTCEEEEEECTHHHHHHHHHHHHTTT T ss_pred CCCCCCEEEEEEHHHHHHHHHHHHHHCCC T ss_conf 17799989982166999999998765269 No 2 >d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=5.4e-38 Score=240.13 Aligned_cols=105 Identities=33% Similarity=0.454 Sum_probs=97.1 Q ss_pred CCCCEEEECCCCHHHHHHHCCCCCEEEEEEECC-CCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHH Q ss_conf 476424540100110111002331379875134-2112100235719982345787741685499998444330133002 Q gi|254780347|r 98 LDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKM 176 (204) Q Consensus 98 lgGH~v~GhVd~~~~i~~i~~~~~~~~~~i~~~-~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~ 176 (204) +|||+||||||++|+|.++++.+++..+++.+| +.+.+|+..|||||+|||||||+++.+++|++++|||||++|||+. T Consensus 1 igGH~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~~~~f~v~li~ETl~~T~l~~ 80 (113) T d1i8da2 1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGK 80 (113) T ss_dssp CSSCCBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBCSSEEEEEECHHHHHHSSGGG T ss_pred CCCEEEEEEECEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHEEECCCCEEEEEEECCCEEEEEEEHHHHHHCCCCC T ss_conf 98501606968799999999738834888874137776554323237615725887633487899996789865491124 Q ss_pred CCCCCEEEEEHHHHHHH----HHHHHCCCC Q ss_conf 48996746971358899----999860233 Q gi|254780347|r 177 HKVGDLINIEVDSMMRY----IARLYALNT 202 (204) Q Consensus 177 ~k~Gd~VNiE~D~l~ky----v~r~~~~~~ 202 (204) |++||+||||+|+++|| ++|+++.++ T Consensus 81 ~~~G~~VNlE~D~~~k~i~~~~~~~~~~~~ 110 (113) T d1i8da2 81 KKLGARVNIEIDPQTQAVVDTVERVLAARE 110 (113) T ss_dssp CCTTCEEEEEECHHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHH T ss_conf 768998899383515799999999875514 No 3 >d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Probab=99.97 E-value=4.5e-32 Score=205.51 Aligned_cols=92 Identities=33% Similarity=0.536 Sum_probs=87.1 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 94533711899999987699359999817551-12667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) ||||||+++|+|.++++.++++++.++.|..+ ..+.+|+|||||||||||++++ +++|.|+++|||+++|||+. T Consensus 1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~-----~~~f~~~ii~eTl~~T~l~~ 75 (93) T d1i8da1 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEIN-----GNHVSFDLMKETLRITNLGD 75 (93) T ss_dssp CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEE-----TTEEEEEEEHHHHHHSGGGG T ss_pred CCCEEECEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECC-----CCCEEEEEEHHHHHHCCHHH T ss_conf 9684234499999999889949999998978863055687699777889999627-----75189999678831172201 Q ss_pred CCCCCCCCCCCCCHHHHC Q ss_conf 565663133543200000 Q gi|254780347|r 80 WGIGTFINLERSVKLGDR 97 (204) Q Consensus 80 l~~G~~VNLE~a~~~g~~ 97 (204) |++|++||||||||+||+ T Consensus 76 ~~~G~~VNlErslk~gde 93 (93) T d1i8da1 76 LKVGDWVNVERAAKFSDE 93 (93) T ss_dssp CCTTCEEEEEECCBTTSC T ss_pred CCCCCEEEECCCCCCCCC T ss_conf 668999997848768898 No 4 >d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.96 E-value=2.6e-30 Score=195.21 Aligned_cols=90 Identities=31% Similarity=0.475 Sum_probs=83.1 Q ss_pred CCCEEEEEEEEEEEEEEC-CCCEEEEEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCC Q ss_conf 945337118999999876-9935999981755112667724653331542365045556686799998656553201355 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIAS 79 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~-~~~~~l~i~~~~~~~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~ 79 (204) |||||||++|+|.++++. +.++++.+..+..++++.+|+|||||||||||++++ +++|.|+++|||+++|||+. T Consensus 1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~~~lipeTl~~T~l~~ 75 (92) T d1kzla1 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFD-----RYHFTVGIAPESLRLTNLGQ 75 (92) T ss_dssp CBCSCCCEEEEEEEEEEETTTEEEEEEECGGGCTTCCTTCEEEETTEEEEEEEEC-----SSEEEEEECHHHHHHSSGGG T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEECCHHHHHCCCCCEEEECCEEEEEEEEC-----CCEEEEEEEHHHCCCCCHHH T ss_conf 9786508399999999879995999998707764263476698566777767611-----10499999737615642221 Q ss_pred CCCCCCCCCCCCCHHH Q ss_conf 5656631335432000 Q gi|254780347|r 80 WGIGTFINLERSVKLG 95 (204) Q Consensus 80 l~~G~~VNLE~a~~~g 95 (204) |++|++|||||||++. T Consensus 76 ~~~G~~VNlE~sl~a~ 91 (92) T d1kzla1 76 CKAGDPVNLERAVLSS 91 (92) T ss_dssp CCTTCEEEEEECCCCS T ss_pred CCCCCEEEECCCCCCC T ss_conf 7679999937125588 No 5 >d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Probab=99.94 E-value=1.5e-27 Score=179.10 Aligned_cols=88 Identities=26% Similarity=0.358 Sum_probs=84.9 Q ss_pred EEEECCCCHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCCC Q ss_conf 24540100110111002331379875134211210023571998234578774168549999844433013300248996 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGD 181 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~Gd 181 (204) +.+||||++|+|.++++.++++.++|++|+.+.+|+..|||||+|||||||+++.+++|++++||||+++|||+.+++|+ T Consensus 1 MFtGiV~~~g~I~~i~~~~~~~~~~i~~~~~~~~~~~~g~SIavnGvcLTV~~~~~~~f~~~ii~eTl~~T~l~~~~~G~ 80 (93) T d1i8da1 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD 80 (93) T ss_dssp CBCSCCCEEEEEEEEEECSSEEEEEEECCGGGTTTCCTTCEEEETTEEEEEEEEETTEEEEEEEHHHHHHSGGGGCCTTC T ss_pred CCCEEECEEEEEEEEEECCCCEEEEEEECHHHHHHCCCCCEEEECCEEEEEEECCCCCEEEEEEHHHHHHCCHHHCCCCC T ss_conf 96842344999999998899499999989788630556876997778899996277518999967883117220166899 Q ss_pred EEEEEHHH Q ss_conf 74697135 Q gi|254780347|r 182 LINIEVDS 189 (204) Q Consensus 182 ~VNiE~D~ 189 (204) +||||.-+ T Consensus 81 ~VNlErsl 88 (93) T d1i8da1 81 WVNVERAA 88 (93) T ss_dssp EEEEEECC T ss_pred EEEECCCC T ss_conf 99978487 No 6 >d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.93 E-value=3.6e-27 Score=176.85 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=81.9 Q ss_pred EEEECCCCHHHHHHHCCCC-CEEEEEEECCCCCCCEECCCCEEEEEEEEEEEEEECCCEEEEEEEHHHHCCCCHHHCCCC Q ss_conf 2454010011011100233-137987513421121002357199823457877416854999984443301330024899 Q gi|254780347|r 102 LVSGHIDGTVEILFLDFIG-DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG 180 (204) Q Consensus 102 ~v~GhVd~~~~i~~i~~~~-~~~~~~i~~~~~~~~~l~~KgsI~idGvSLTV~~~~~~~f~v~lIp~Tl~~T~l~~~k~G 180 (204) +.+||||++|+|.++++.+ +++.+++..|+ +.+++..|||||+|||||||+++.+++|++++|||||++|||+.+++| T Consensus 1 MFTGiV~~~g~I~~i~~~~~~~~~~~i~~~~-~~~~i~~g~SIavnGvcLTV~~~~~~~f~~~lipeTl~~T~l~~~~~G 79 (92) T d1kzla1 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQ-ILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAG 79 (92) T ss_dssp CBCSCCCEEEEEEEEEEETTTEEEEEEECGG-GCTTCCTTCEEEETTEEEEEEEECSSEEEEEECHHHHHHSSGGGCCTT T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEECCH-HHHHCCCCCEEEECCEEEEEEEECCCEEEEEEEHHHCCCCCHHHCCCC T ss_conf 9786508399999999879995999998707-764263476698566777767611104999997376156422217679 Q ss_pred CEEEEEHHHHHH Q ss_conf 674697135889 Q gi|254780347|r 181 DLINIEVDSMMR 192 (204) Q Consensus 181 d~VNiE~D~l~k 192 (204) |+||||.|+++. T Consensus 80 ~~VNlE~sl~a~ 91 (92) T d1kzla1 80 DPVNLERAVLSS 91 (92) T ss_dssp CEEEEEECCCCS T ss_pred CEEEECCCCCCC T ss_conf 999937125588 No 7 >d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=6.3e-25 Score=163.68 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=78.3 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECC-CC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCC Q ss_conf 945337118999999876993599998175-51-1266772465333154236504555668679999865655320135 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSY-NT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIA 78 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~-~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~ 78 (204) |++|+|+++|+|.++.+.++..++.+..+. .+ ..+.+|+|||||||||||+++. +++|+|+++|||+++|||+ T Consensus 5 ~vsGhV~~~G~I~~i~~~~~~~~~~i~~~~~~~~~~i~~g~SIavnGvcLTV~~~~-----~~~f~v~li~ETl~~T~l~ 79 (113) T d1i8da2 5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT-----PTRFCVHLIPETLERTTLG 79 (113) T ss_dssp CBCCCCCEEEEEEEEEEETTEEEEEEEESCGGGGGGCCTTCEEEETTEEEECCSBC-----SSEEEEEECHHHHHHSSGG T ss_pred EEEEEECEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHEEECCCCEEEEEEEC-----CCEEEEEEEHHHHHHCCCC T ss_conf 16069687999999997388348888741377765543232376157258876334-----8789999678986549112 Q ss_pred CCCCCCCCCCCCC Q ss_conf 5565663133543 Q gi|254780347|r 79 SWGIGTFINLERS 91 (204) Q Consensus 79 ~l~~G~~VNLE~a 91 (204) .|++|++||||-- T Consensus 80 ~~~~G~~VNlE~D 92 (113) T d1i8da2 80 KKKLGARVNIEID 92 (113) T ss_dssp GCCTTCEEEEEEC T ss_pred CCCCCCEEEEEEE T ss_conf 4768998899383 No 8 >d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=99.90 E-value=6.2e-24 Score=157.90 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=78.4 Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEEEECC-CC-CCCCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCC Q ss_conf 945337118999999876993599998175-51-1266772465333154236504555668679999865655320135 Q gi|254780347|r 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSY-NT-SKMKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIA 78 (204) Q Consensus 1 MFtGIV~~~G~V~~i~~~~~~~~l~i~~~~-~~-~~l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~ 78 (204) |-+|+|+++|+|.++++.++++++.+.++. .+ ..+..|+|||||||||||++++ +++|+|+++|||+++|||+ T Consensus 6 ~v~GHVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~~l~~~~SIavnGvcLTV~~~~-----~~~f~v~lipETl~~Tnl~ 80 (110) T d1kzla2 6 FVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----DSTFSIMMISYTQSKVIMA 80 (110) T ss_dssp CBCSCCCEEEEEEEEEEETTEEEEEEEESSGGGGGGCCTTCEEEETTEEEEEEEEC-----SSCEEEEECHHHHTTSGGG T ss_pred EEEEEECEEEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHEEECCCCEEEEEEEC-----CCEEEEEEHHHHHHHCCCC T ss_conf 35079568999999998798521356325055533100121477478389997256-----9789998769987656000 Q ss_pred CCCCCCCCCCCCCCH Q ss_conf 556566313354320 Q gi|254780347|r 79 SWGIGTFINLERSVK 93 (204) Q Consensus 79 ~l~~G~~VNLE~a~~ 93 (204) .|++|++||||+.+- T Consensus 81 ~~~~G~~VNLE~D~l 95 (110) T d1kzla2 81 KKNVGDLVNVEVDQI 95 (110) T ss_dssp GCCTTCEEEEEECTH T ss_pred CCCCCCEEEEEEHHH T ss_conf 177999899821669 No 9 >d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Probab=64.75 E-value=4.3 Score=18.44 Aligned_cols=82 Identities=6% Similarity=0.062 Sum_probs=39.4 Q ss_pred EEEEEEEEEEECC-CCEEEEEEECCCCCCCCCCCEEEE----CC----EEEEEEEECCCCCCCCEEEEE--EEHHHHHHC Q ss_conf 1189999998769-935999981755112667724653----33----154236504555668679999--865655320 Q gi|254780347|r 7 TDIGKIIAMTPIA-KGMRLRVMTSYNTSKMKLGCSIAH----AG----ICLTVVRLSEEHSVDNWYEVE--VWAETNRIT 75 (204) Q Consensus 7 ~~~G~V~~i~~~~-~~~~l~i~~~~~~~~l~~G~SIav----nG----vCLTV~~i~~~~~~~~~f~~~--~~~ETl~~T 75 (204) |...+|.+.++.. +-+++.++.+......+.|.=+.+ +| -+.++.+...+. ..+++. ..+.-.... T Consensus 4 ~~~~~V~~~~~~~~~i~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~~~R~~Si~~~~~~~---~~i~~~i~~~~~g~~t~ 80 (101) T d1ep3b1 4 QEMMTVVSQREVAYNIFEMVLKGTLVDEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRA---KTCTILYRIGDETTGTY 80 (101) T ss_dssp EEEEEEEEEEEEETTEEEEEEESGGGGGCCSTTCEEEECCSCTTCCSCEEEECCEEETTT---TEEEEEEECCCTTSHHH T ss_pred CEEEEEEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEECCCCCCEEECCCEEEECCCCC---CEEEEEEEECCCCHHHH T ss_conf 736899998893499799999878765236999268887057862761022462079987---28999973227503547 Q ss_pred CCCCCCCCCCCCCCCC Q ss_conf 1355565663133543 Q gi|254780347|r 76 NIASWGIGTFINLERS 91 (204) Q Consensus 76 ~l~~l~~G~~VNLE~a 91 (204) -+..+++||.|++.-| T Consensus 81 ~l~~l~~Gd~v~v~GP 96 (101) T d1ep3b1 81 KLSKLESGAKVDVMGP 96 (101) T ss_dssp HHHTCCTTCEEEEEEE T ss_pred HHHHCCCCCEEEEECC T ss_conf 8870899999999566 No 10 >d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]} Probab=32.11 E-value=9.4 Score=16.44 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=13.9 Q ss_pred EHHHHHHHHHHHHCCCC Q ss_conf 71358899999860233 Q gi|254780347|r 186 EVDSMMRYIARLYALNT 202 (204) Q Consensus 186 E~D~l~kyv~r~~~~~~ 202 (204) +.|+|.||++|-|+... T Consensus 94 ~~D~LMKYiYkG~~~p~ 110 (143) T d1k8kg_ 94 GVDLLMKYIYKGFESPS 110 (143) T ss_dssp HHHHHHHHHHHHHTSCC T ss_pred HHHHHHHHHHHHCCCCC T ss_conf 67899999987315888 No 11 >d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 9606]} Probab=20.97 E-value=24 Score=14.06 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=16.9 Q ss_pred EEEEECCCCCCCEECCCCEEEEEE--EEEEEEEECCCEEEEE Q ss_conf 987513421121002357199823--4578774168549999 Q gi|254780347|r 124 YCRLSLPHNLEQFIAVKGSVCLNG--VSLTVNLVGKNFFDVL 163 (204) Q Consensus 124 ~~~i~~~~~~~~~l~~KgsI~idG--vSLTV~~~~~~~f~v~ 163 (204) .+.+.+|. +.+.+.+...|-+|- +.|+|.++.++.+.+- T Consensus 40 ~i~v~~~~-l~~~v~~G~~IliDDG~i~l~V~~v~~~~i~~~ 80 (102) T d2vgba1 40 TVWVDYPN-IVRVVPVGGRIYIDDGLISLVVQKIGPEGLVTQ 80 (102) T ss_dssp EEEBSCTT-HHHHSCTTCEEEETTTTEEEEEEEECSSEEEEE T ss_pred EEEECHHH-HHHHCCCCCEEEECCCCEEEEEEECCCCEEEEE T ss_conf 99856089-753137777899858816899985378879999 Done!