RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >gnl|CDD|181760 PRK09289, PRK09289, riboflavin synthase subunit alpha; Provisional. Length = 194 Score = 254 bits (652), Expect = 1e-68 Identities = 87/197 (44%), Positives = 126/197 (63%), Gaps = 5/197 (2%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVD 60 MFTGIV ++G + ++ P G+RL + S +KLG SIA G+CLTV + Sbjct: 1 MFTGIVEEVGTVESIEPKGDGLRLTIEAGKLLSDLKLGDSIAVNGVCLTVTEID-----G 55 Query: 61 NWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIG 120 + + V+V ET R TN+ +G +NLER+++LGDRL GH+VSGH+DGT EI+ ++ G Sbjct: 56 DSFTVDVSPETLRRTNLGDLKVGDRVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEG 115 Query: 121 DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG 180 +S+ R P L ++I KGS+ ++GVSLTVN V + F V LI HT+E TT KVG Sbjct: 116 NSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVG 175 Query: 181 DLINIEVDSMMRYIARL 197 D +N+E+D + +Y+ RL Sbjct: 176 DRVNLEIDLLAKYVERL 192 >gnl|CDD|183846 PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional. Length = 206 Score = 155 bits (395), Expect = 5e-39 Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 6/195 (3%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MFTGIV +++A+ L + +++G S+A G+CLTV ++ Sbjct: 1 MFTGIVQATAEVVAIHKKDGLNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIE----- 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 + +V ET R+TN+A +G +N+ERS K G + GH++SGH+D T ++ + Sbjct: 56 GDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKFGAEIGGHILSGHVDTTATVVEISDT 115 Query: 120 GDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKV 179 ++ R +P ++I KG + +NG SLTV V ++ F+V LI T+ T KV Sbjct: 116 EENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKV 175 Query: 180 GDLINIEVDSMMRYI 194 GDL+NIE+DS + I Sbjct: 176 GDLVNIEIDSQTQVI 190 >gnl|CDD|161753 TIGR00187, ribE, riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc. Length = 200 Score = 152 bits (386), Expect = 5e-38 Identities = 68/198 (34%), Positives = 115/198 (58%), Gaps = 7/198 (3%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSK-MKLGCSIAHAGICLTVVRLSEEHSV 59 MFTGI+ K++++ + L V + + ++LG SIA G+CLTV +++ H Sbjct: 1 MFTGIIQGTAKLVSIKEKPLFISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINKNH-- 58 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 + V++ ET + TN+ +GT++N+ER++K + GH VSGHID T EI ++ Sbjct: 59 ---FSVDLSPETLKRTNLGDLKVGTWVNIERALKADGEIGGHFVSGHIDTTAEIAKIETS 115 Query: 120 GDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHK 178 +++ L L ++I KGS+ ++G+SLT+ V + F V LI HT+E T + K Sbjct: 116 ENNVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVTETRFCVSLIPHTLENTILGLKK 175 Query: 179 VGDLINIEVDSMMRYIAR 196 +GD +NIE+D + + +A Sbjct: 176 LGDRVNIEIDMLGKAVAD 193 >gnl|CDD|178342 PLN02741, PLN02741, riboflavin synthase. Length = 194 Score = 133 bits (337), Expect = 3e-32 Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 10/200 (5%) Query: 1 MFTGIVTDIGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRL-SEEHS 58 +FTGIV ++G++ ++ G L++ S +KLG SIA G CLTV +E + Sbjct: 1 LFTGIVEEMGEVKSLGVTDDGGFDLKIEASTVLDGVKLGDSIAVNGTCLTVTEFDGDEFT 60 Query: 59 VDNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDF 118 V + ET R T++ G+ +NLER+++ G R+ GH V GH+DGT I+ + Sbjct: 61 VG------LAPETLRKTSLGELKTGSLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEP 114 Query: 119 IGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGK--NFFDVLLIRHTIEETTWKM 176 GDS++ ++ L ++I KG + ++G SLTV V F+ +L+ +T ++ + Sbjct: 115 EGDSLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPL 174 Query: 177 HKVGDLINIEVDSMMRYIAR 196 KVGD +N+EVD + +Y+ R Sbjct: 175 KKVGDKVNLEVDILGKYVER 194 >gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional. Length = 245 Score = 26.8 bits (59), Expect = 3.8 Identities = 8/20 (40%), Positives = 12/20 (60%) Query: 100 GHLVSGHIDGTVEILFLDFI 119 GHL+ DGT E L +++ Sbjct: 225 GHLIVRRPDGTEEDLMAEYL 244 >gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family. Length = 228 Score = 26.0 bits (57), Expect = 6.8 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Query: 100 GHLVSGHIDGTVEILF--LDFIGDSMYCR--LSLPHNLEQFIA-VKGSVCLN 146 G LVS + E L LD I D +YC+ E +A V+GSVCL Sbjct: 14 GCLVS--LTDNYEGLLDILDNIADLVYCQTLADAREIPEMDVALVEGSVCLQ 63 >gnl|CDD|180094 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional. Length = 696 Score = 26.1 bits (58), Expect = 7.4 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 15 MTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLT 49 + PI G+ L + S TS+ LG ++ G+ L Sbjct: 572 LAPILLGLILAIPLSVLTSRASLGLALRRRGLFLI 606 >gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional. Length = 954 Score = 25.9 bits (58), Expect = 7.6 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 4/18 (22%) Query: 190 MMRYIARL----YALNTS 203 MMRY+ RL AL+ S Sbjct: 483 MMRYLRRLEDKDLALDRS 500 >gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii. Length = 2757 Score = 25.8 bits (56), Expect = 8.9 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 133 LEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMR 192 ++Q+I+ K ++ L+ ++ N NF + I I K ++ ++ N E +++M+ Sbjct: 2328 IDQYISDKKNIFLHALNENTNF---NFNALKEIYDDIINRENKADEIENINNKENENIMQ 2384 Query: 193 YI 194 YI Sbjct: 2385 YI 2386 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.138 0.416 Gapped Lambda K H 0.267 0.0618 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,253,420 Number of extensions: 197472 Number of successful extensions: 425 Number of sequences better than 10.0: 1 Number of HSP's gapped: 408 Number of HSP's successfully gapped: 12 Length of query: 204 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 115 Effective length of database: 4,071,361 Effective search space: 468206515 Effective search space used: 468206515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.2 bits)