HHsearch alignment for GI: 254780348 and conserved domain: COG0117

>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism].
Probab=100.00  E-value=0  Score=408.63  Aligned_cols=144  Identities=51%  Similarity=0.839  Sum_probs=140.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC
Q ss_conf             87789999999999998708821888964799986998999984388769848999999730010698899905732115
Q gi|254780348|r    3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY   82 (364)
Q Consensus         3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~   82 (364)
T Consensus         2 ~~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~~a~Gat~yVTLEPCsH~   81 (146)
T COG0117           2 SSELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAGEAARGATAYVTLEPCSHY   81 (146)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf             52379999999999998508667899966699988999986660377899728999999758555787899972476668


Q ss_pred             CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCC
Q ss_conf             752105556530134324663010121101243311001898896-2221012320012222011
Q gi|254780348|r   83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV  146 (364)
Q Consensus        83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~  146 (364)
T Consensus        82 GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~~  146 (146)
T COG0117          82 GRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRMR  146 (146)
T ss_pred             CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf             99964579999709888999952899301684699999769869960408999998888870169