HHsearch alignment for GI: 254780348 and conserved domain: COG0117
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=408.63 Aligned_cols=144 Identities=51% Similarity=0.839 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC
Q ss_conf 87789999999999998708821888964799986998999984388769848999999730010698899905732115
Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 (364)
Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~ 82 (364)
T Consensus 2 ~~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~~a~Gat~yVTLEPCsH~ 81 (146)
T COG0117 2 SSELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAGEAARGATAYVTLEPCSHY 81 (146)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 52379999999999998508667899966699988999986660377899728999999758555787899972476668
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCC
Q ss_conf 752105556530134324663010121101243311001898896-2221012320012222011
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~ 146 (364)
T Consensus 82 GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~~ 146 (146)
T COG0117 82 GRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRMR 146 (146)
T ss_pred CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf 99964579999709888999952899301684699999769869960408999998888870169