HHsearch alignment for GI: 254780348 and conserved domain: TIGR00227
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain; InterPro: IPR011549 Eubacterial riboflavin-specific deaminases have a zinc-binding domain, IPR002125 from INTERPRO, toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins related to riboflavin biosynthesis consist only of this domain and lack the zinc-binding domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0050661 NADP binding, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=396.68 Aligned_cols=209 Identities=33% Similarity=0.502 Sum_probs=189.8
Q ss_pred CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCC-C----------
Q ss_conf 42220110102787720211365322221013566676420144036631220134542354434444-3----------
Q gi|254780348|r 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-E---------- 216 (364)
Q Consensus 148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~-~---------- 216 (364)
T Consensus 1 ~~Pyv~lk~A~sLDGkiA~~~g~s~~It~e~ar~~Vh~lR~~~daIlvG~gTVlaDdP~LTv~~~~~~e~~~~~yk~~~L 80 (239)
T TIGR00227 1 GRPYVILKLAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELPEALQAEYKKENL 80 (239)
T ss_pred CCCEEEEECCCCCCHHHHCCCCCCCEECCHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCCCHHHHHCCCHHHC
T ss_conf 99728972012324021126886534828789899998765619788747237721775567798874455421214551
Q ss_pred CCCEEEEECC----CCCCCHHHHHCCCC-CCCEEEEECCC-CCCCH---HHHCCCCCCCCCCCCCC---CHHHHHHHHHH
Q ss_conf 4421576446----68998022100344-46707985465-54210---11002232222233322---27889999860
Q gi|254780348|r 217 HSPMRIILDP----HFKLSLDSKIIKTA-LLAPVIIVTEN-DDPVL---ALAFRKKNINIIYCDCR---DLKKLLTILVG 284 (364)
Q Consensus 217 ~~P~riVld~----~l~i~~~~~l~~~~-~~~~~ii~~~~-~~~~~---~~~~~~~~v~vi~~~~~---dl~~iL~~L~~ 284 (364)
T Consensus 81 ~~PvRvv~DskqkW~~r~p~~~~~~~~~~Gka~t~~~ts~~~d~e~ekk~~~l~~~~~~~~~~~~~G~v~l~~Lm~~L~~ 160 (239)
T TIGR00227 81 RNPVRVVLDSKQKWRLRVPPTARLLNDEVGKAPTWVATSEPADEEKEKKVKELEDFGVEVIVLETKGRVDLKKLMEILYE 160 (239)
T ss_pred CCCCCEEEECCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHEEEEEECCCCCEECHHHHHHHHHH
T ss_conf 69951898267403215880117762167982579996243783010244310201447787187763368999999778
Q ss_pred C-CCCEEEECCHH-HHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCC-----CCCCEEEEEEEECCCEEEEEEE
Q ss_conf 7-99699981238-99999997889889999960743268875233345454-----4464054468867936999950
Q gi|254780348|r 285 R-GVTSLLVEGGA-AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356 (364)
Q Consensus 285 ~-gi~~iLVEGG~-~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~-----~~~~~l~~~~~ig~Dv~~~y~~ 356 (364)
T Consensus 161 ~f~I~~~~vEgG~n~L~~~l~~~glVde~~~yiAPk~~GG~~Apt~v~~eGf~~m~d~~~l~~~~~~~iG~D~~l~~~~ 239 (239)
T TIGR00227 161 EFGIRSVMVEGGGNTLNGSLLKEGLVDEVIIYIAPKLLGGRDAPTLVDGEGFQKMADAPNLELKEIEQIGEDIVLTAKL 239 (239)
T ss_pred HHCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCEEEEEEC
T ss_conf 6394489996266899999982398208988860411266768875487564348876340000020048867999649