HHsearch alignment for GI: 254780348 and conserved domain: cd01284
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=100.00 E-value=5.5e-44 Score=317.16 Aligned_cols=113 Identities=56% Similarity=0.913 Sum_probs=109.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCCCCHHHHHHHHHHCC-HHCCCEEEEECCCCCCCCCCCHH
Q ss_conf 999999998708821888964799986-9989999843887698489999997300-10698899905732115752105
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPC 88 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G~~HAE~~al~~~~~-~~~~atlyvtLEPC~h~GktppC 88 (364)
T Consensus 1 M~~Ai~lA~~~~g~t~pnP~VGaViv~~~g~Iis~g~~~~~g~~HAE~~Ai~~a~~~~~~g~tlyvTLEPC~~~g~tp~C 80 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLARGATLYVTLEPCSHHGKTPPC 80 (115)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHH
T ss_conf 97999999853798899999899999179989998847989974099999998523135797699986783478987549
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 55653013432466301012110124331100189
Q gi|254780348|r 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 (364)
Q Consensus 89 ~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G 123 (364)
T Consensus 81 a~ai~~~gI~~Vv~g~~DP~p~v~g~G~~~Lk~~G 115 (115)
T cd01284 81 VDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 99999839299999675949774887899998675