Query gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 364
No_of_seqs 245 out of 4143
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 16:19:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780348.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10786 ribD bifunctional dia 100.0 0 0 857.7 28.2 345 6-356 2-366 (367)
2 TIGR00326 eubact_ribD riboflav 100.0 0 0 824.9 19.5 342 11-352 1-392 (393)
3 COG0117 RibD Pyrimidine deamin 100.0 0 0 408.6 13.2 144 3-146 2-146 (146)
4 TIGR00227 ribD_Cterm riboflavi 100.0 0 0 396.7 12.9 209 148-356 1-239 (239)
5 PRK05625 hypothetical protein; 100.0 0 0 375.6 16.3 223 133-356 3-238 (239)
6 COG1985 RibD Pyrimidine reduct 100.0 0 0 362.1 15.7 210 147-358 1-218 (218)
7 TIGR01508 rib_reduct_arch diam 100.0 1.4E-45 0 328.4 11.3 204 150-355 1-223 (224)
8 pfam01872 RibD_C RibD C-termin 100.0 2.1E-43 0 313.3 15.6 194 150-352 1-196 (196)
9 cd01284 Riboflavin_deaminase-r 100.0 5.5E-44 0 317.2 10.3 113 11-123 1-115 (115)
10 PRK10860 tRNA-specific adenosi 100.0 7.3E-38 1.9E-42 275.8 12.1 144 6-159 18-175 (178)
11 COG0590 CumB Cytosine/adenosin 99.9 3E-23 7.6E-28 177.2 11.1 133 3-143 4-151 (152)
12 pfam00383 dCMP_cyt_deam_1 Cyti 99.9 1.7E-22 4.3E-27 172.1 9.6 93 5-104 2-104 (104)
13 cd01286 deoxycytidylate_deamin 99.9 1.6E-21 4.1E-26 165.5 9.8 93 7-108 1-121 (131)
14 cd01285 nucleoside_deaminase N 99.8 7.1E-21 1.8E-25 161.2 9.2 91 11-109 1-101 (109)
15 COG2131 ComEB Deoxycytidylate 99.8 2.9E-19 7.4E-24 150.3 11.4 118 3-129 5-151 (164)
16 KOG1018 consensus 99.7 7.8E-17 2E-21 133.9 10.6 139 3-148 7-165 (169)
17 cd00786 cytidine_deaminase-lik 99.7 2.8E-17 7.2E-22 136.9 7.5 87 11-104 1-95 (96)
18 KOG3127 consensus 99.5 7.1E-14 1.8E-18 113.9 8.2 119 5-132 65-211 (230)
19 COG0262 FolA Dihydrofolate red 98.9 2.9E-08 7.4E-13 76.1 12.4 147 152-344 2-149 (167)
20 TIGR02571 ComEB ComE operon pr 98.8 1.5E-08 3.8E-13 78.0 6.4 117 5-133 4-143 (151)
21 cd00209 DHFR Dihydrofolate red 97.9 0.00029 7.3E-09 49.1 10.9 143 153-348 2-147 (158)
22 PRK10769 folA dihydrofolate re 97.8 0.00068 1.7E-08 46.6 11.1 149 152-357 2-159 (159)
23 KOG2771 consensus 97.7 0.0001 2.6E-09 52.2 6.5 100 6-119 166-313 (344)
24 pfam00186 DHFR_1 Dihydrofolate 97.7 0.0011 2.9E-08 45.1 11.0 140 152-347 2-143 (159)
25 PRK06848 hypothetical protein; 97.5 0.0018 4.6E-08 43.8 10.3 88 1-98 1-110 (139)
26 PTZ00164 bifunctional dihydrof 97.5 0.0027 6.9E-08 42.5 11.1 161 152-358 10-189 (512)
27 cd01283 cytidine_deaminase Cyt 96.8 0.0063 1.6E-07 40.1 7.0 89 13-109 3-104 (112)
28 PRK05578 cytidine deaminase; V 95.5 0.14 3.7E-06 30.9 8.4 78 10-96 6-97 (132)
29 KOG1324 consensus 95.4 0.092 2.3E-06 32.2 7.3 127 154-324 6-147 (190)
30 PRK12411 cytidine deaminase; P 95.1 0.26 6.5E-06 29.2 8.7 90 7-105 3-108 (132)
31 KOG0833 consensus 94.3 0.47 1.2E-05 27.4 8.6 92 11-109 24-130 (173)
32 PRK08298 cytidine deaminase; V 93.1 0.81 2.1E-05 25.8 9.3 94 5-109 2-112 (128)
33 PRK09027 cytidine deaminase; P 90.4 1.6 4E-05 23.9 8.6 59 28-94 70-138 (295)
34 pfam08973 DUF1893 Domain of un 88.0 0.91 2.3E-05 25.5 4.3 92 11-127 1-92 (134)
35 TIGR01182 eda 2-dehydro-3-deox 85.8 0.89 2.3E-05 25.6 3.3 126 175-311 42-194 (205)
36 PRK06015 keto-hydroxyglutarate 85.2 0.74 1.9E-05 26.1 2.6 28 175-202 49-76 (212)
37 PRK00478 scpA segregation and 85.1 1.6 4.2E-05 23.8 4.4 117 152-318 2-120 (505)
38 COG0295 Cdd Cytidine deaminase 80.7 4.8 0.00012 20.6 9.6 86 1-96 1-99 (134)
39 KOG3191 consensus 80.4 0.96 2.4E-05 25.3 1.7 133 52-193 24-157 (209)
40 PRK08305 spoVFB dipicolinate s 79.5 2.5 6.3E-05 22.6 3.6 158 116-294 26-194 (195)
41 COG1105 FruK Fructose-1-phosph 79.4 3.3 8.4E-05 21.7 4.1 202 73-297 4-225 (310)
42 COG4408 Uncharacterized protei 78.6 4 0.0001 21.2 4.4 83 29-129 111-201 (431)
43 pfam08210 APOBEC_N APOBEC-like 78.6 3.8 9.6E-05 21.3 4.2 63 27-95 21-98 (116)
44 PRK05718 keto-hydroxyglutarate 77.5 2.2 5.7E-05 22.9 2.8 28 175-202 49-76 (212)
45 PRK09427 bifunctional indole-3 77.1 1 2.6E-05 25.1 1.0 37 175-211 218-254 (459)
46 pfam09587 PGA_cap Bacterial ca 73.4 4.4 0.00011 20.8 3.5 73 59-131 26-113 (237)
47 PRK05579 bifunctional phosphop 73.4 3.6 9.1E-05 21.5 3.0 111 89-202 107-239 (392)
48 PRK08904 consensus 73.3 3 7.6E-05 22.0 2.6 28 175-202 44-71 (207)
49 TIGR01355 cyt_deam_dimer cytid 71.8 8.2 0.00021 19.1 6.8 153 9-189 27-212 (311)
50 PRK08782 consensus 68.4 4.1 0.0001 21.1 2.4 28 175-202 51-78 (219)
51 PRK08104 consensus 68.1 5 0.00013 20.5 2.8 28 175-202 49-76 (212)
52 pfam01081 Aldolase KDPG and KH 67.6 7.2 0.00018 19.4 3.5 28 175-202 42-69 (196)
53 PRK07455 keto-hydroxyglutarate 66.8 10 0.00026 18.4 4.5 123 175-307 47-175 (210)
54 cd00452 KDPG_aldolase KDPG and 66.0 7.2 0.00018 19.4 3.2 28 175-202 38-65 (190)
55 pfam10100 DUF2338 Uncharacteri 65.7 4.5 0.00012 20.8 2.2 89 30-136 110-209 (429)
56 PRK06857 consensus 65.5 6.5 0.00017 19.7 2.9 28 175-202 46-73 (209)
57 smart00854 PGA_cap Bacterial c 63.7 8.8 0.00023 18.8 3.4 75 59-133 22-113 (239)
58 TIGR01354 cyt_deam_tetra cytid 61.6 13 0.00033 17.7 6.2 90 11-107 3-113 (135)
59 PTZ00333 triosephosphate isome 59.6 10 0.00027 18.3 3.1 42 262-304 204-245 (252)
60 PRK13957 indole-3-glycerol-pho 58.5 4.3 0.00011 21.0 1.0 34 175-208 209-242 (247)
61 PRK05301 pyrroloquinoline quin 58.0 6.6 0.00017 19.7 1.9 69 84-152 103-187 (375)
62 PRK07313 phosphopantothenoylcy 57.8 4.4 0.00011 20.9 1.0 91 116-225 22-122 (180)
63 TIGR01407 dinG_rel DnaQ family 55.1 9.6 0.00025 18.6 2.3 60 31-104 23-87 (944)
64 TIGR01523 ATPase-IID_K-Na pota 54.9 5.4 0.00014 20.3 1.0 101 101-208 588-710 (1001)
65 TIGR00666 PBP4 D-alanyl-D-alan 54.9 2.7 6.8E-05 22.3 -0.5 140 26-166 127-288 (427)
66 PTZ00187 succinyl-CoA syntheta 54.8 17 0.00042 17.0 4.5 31 23-58 12-43 (309)
67 PRK13907 rnhA ribonuclease H; 54.7 17 0.00042 17.0 5.7 45 22-66 7-55 (128)
68 pfam02844 GARS_N Phosphoribosy 54.0 14 0.00034 17.6 2.9 79 50-134 8-96 (99)
69 COG0074 SucD Succinyl-CoA synt 53.8 17 0.00044 16.9 5.4 88 34-128 3-121 (293)
70 TIGR03286 methan_mark_15 putat 51.6 12 0.00032 17.8 2.4 39 29-67 154-196 (404)
71 cd00851 MTH1175 This uncharact 51.2 14 0.00037 17.4 2.7 37 85-127 52-88 (103)
72 cd05126 Mth938 Mth938 domain. 51.2 12 0.0003 18.0 2.3 49 81-129 43-92 (117)
73 COG1433 Uncharacterized conser 50.6 14 0.00035 17.5 2.5 17 89-105 58-74 (121)
74 PRK06395 phosphoribosylamine-- 49.9 9.9 0.00025 18.5 1.7 75 49-131 10-97 (435)
75 PRK13802 bifunctional indole-3 49.6 8 0.0002 19.1 1.2 94 116-209 153-253 (695)
76 pfam00218 IGPS Indole-3-glycer 49.5 8.1 0.00021 19.1 1.2 13 280-292 225-237 (254)
77 PRK13790 phosphoribosylamine-- 49.1 13 0.00034 17.6 2.3 93 49-150 8-117 (415)
78 KOG3363 consensus 47.5 5.9 0.00015 20.0 0.2 10 279-288 133-142 (196)
79 pfam06754 PhnG Phosphonate met 47.1 20 0.0005 16.5 2.9 30 33-63 68-98 (147)
80 PRK11572 copper homeostasis pr 46.9 16 0.00041 17.1 2.4 12 188-199 85-96 (248)
81 KOG0237 consensus 46.7 18 0.00045 16.8 2.6 89 50-150 11-122 (788)
82 pfam02550 AcetylCoA_hydro Acet 46.0 20 0.0005 16.5 2.7 122 33-166 16-143 (198)
83 PRK02458 ribose-phosphate pyro 44.6 12 0.00031 17.9 1.5 44 273-316 232-279 (323)
84 PRK01999 consensus 44.4 12 0.00031 17.9 1.4 43 274-316 227-273 (311)
85 PRK00278 trpC indole-3-glycero 43.9 11 0.00027 18.3 1.1 11 282-292 229-239 (261)
86 TIGR01116 ATPase-IIA1_Ca calci 43.1 8 0.0002 19.1 0.4 26 101-127 460-486 (800)
87 PRK04923 ribose-phosphate pyro 43.0 12 0.00032 17.8 1.3 44 273-316 231-278 (319)
88 PRK05259 consensus 42.2 14 0.00037 17.4 1.6 42 273-316 223-270 (310)
89 PRK09058 coproporphyrinogen II 42.0 19 0.00047 16.6 2.1 79 46-125 113-209 (447)
90 PRK01259 ribose-phosphate pyro 41.8 13 0.00034 17.6 1.3 44 273-316 222-269 (309)
91 PRK09249 coproporphyrinogen II 41.4 11 0.00028 18.2 0.9 79 46-125 108-204 (456)
92 PRK09140 2-dehydro-3-deoxy-6-p 41.1 17 0.00043 16.9 1.8 124 174-308 43-174 (206)
93 KOG1100 consensus 40.8 15 0.00038 17.3 1.4 39 52-90 147-187 (207)
94 cd00331 IGPS Indole-3-glycerol 40.1 14 0.00035 17.5 1.2 27 179-205 183-210 (217)
95 KOG2737 consensus 39.4 25 0.00064 15.8 2.4 64 33-103 44-128 (492)
96 pfam07825 Exc Excisionase-like 39.1 7.7 0.0002 19.2 -0.2 21 72-92 1-21 (72)
97 COG0134 TrpC Indole-3-glycerol 38.7 14 0.00037 17.4 1.1 33 175-207 214-247 (254)
98 PRK09920 acetyl-CoA:acetoacety 38.5 29 0.00074 15.3 5.6 109 35-158 14-123 (220)
99 cd04672 Nudix_Hydrolase_14 Mem 38.3 29 0.00075 15.3 2.7 41 27-67 1-51 (123)
100 PRK07199 phosphoribosylpyropho 38.0 16 0.00042 17.0 1.3 18 88-108 110-127 (301)
101 PRK04554 consensus 38.0 18 0.00046 16.7 1.5 44 273-316 229-276 (327)
102 PRK11539 hypothetical protein; 38.0 18 0.00046 16.7 1.5 13 276-288 698-710 (754)
103 pfam06545 DUF1116 Protein of u 37.6 10 0.00027 18.3 0.3 22 74-95 1-22 (216)
104 TIGR02764 spore_ybaN_pdaB poly 37.6 30 0.00077 15.2 3.6 45 235-293 150-195 (198)
105 TIGR01755 flav_wrbA flavoprote 37.6 13 0.00032 17.8 0.7 32 187-230 74-105 (205)
106 TIGR00007 TIGR00007 phosphorib 37.5 19 0.00049 16.5 1.6 45 176-224 81-126 (241)
107 PRK02039 consensus 37.4 19 0.00048 16.6 1.6 42 273-316 228-275 (316)
108 PRK03092 ribose-phosphate pyro 37.4 17 0.00043 16.9 1.3 42 273-316 215-262 (304)
109 PRK00121 trmB tRNA (guanine-N( 37.1 31 0.00078 15.2 5.8 55 262-316 76-134 (229)
110 PRK02812 ribose-phosphate pyro 36.5 24 0.0006 16.0 1.9 44 273-316 244-292 (331)
111 PRK01506 consensus 36.2 19 0.00049 16.6 1.4 44 273-316 231-278 (317)
112 cd04511 Nudix_Hydrolase_4 Memb 36.0 29 0.00075 15.3 2.3 42 26-67 9-65 (130)
113 PRK04117 consensus 35.6 20 0.00051 16.4 1.5 44 273-316 225-272 (309)
114 PRK02269 ribose-phosphate pyro 34.7 20 0.00052 16.4 1.4 44 273-316 231-278 (321)
115 PRK08309 short chain dehydroge 34.2 27 0.00068 15.6 1.9 35 162-197 138-173 (182)
116 PRK08074 bifunctional ATP-depe 34.2 34 0.00087 14.9 3.5 17 188-204 674-690 (932)
117 TIGR01910 DapE-ArgE acetylorni 33.9 26 0.00065 15.7 1.8 61 34-99 104-171 (427)
118 PTZ00145 phosphoribosylpyropho 33.8 24 0.00061 15.9 1.6 41 274-316 354-400 (443)
119 COG3624 PhnG Uncharacterized e 33.1 35 0.0009 14.8 3.0 27 37-63 75-102 (151)
120 COG5252 Uncharacterized conser 32.8 35 0.00089 14.8 2.3 24 148-173 134-158 (299)
121 PRK00934 ribose-phosphate pyro 32.7 23 0.00059 16.0 1.4 44 273-316 218-265 (286)
122 PRK12412 pyridoxal kinase; Rev 32.7 36 0.00092 14.7 2.4 25 273-297 155-179 (268)
123 pfam09263 PEX-2N Peroxisome bi 32.6 35 0.00089 14.8 2.3 29 50-81 57-87 (87)
124 PRK00881 purH bifunctional pho 32.6 36 0.00092 14.7 8.6 50 245-296 307-356 (514)
125 PRK13789 phosphoribosylamine-- 32.3 36 0.00093 14.7 3.3 92 49-150 12-122 (426)
126 TIGR00737 nifR3_yhdG putative 32.0 27 0.00068 15.6 1.6 112 84-207 123-247 (336)
127 KOG1596 consensus 31.9 27 0.00069 15.5 1.6 12 72-83 81-92 (317)
128 CHL00012 ndhJ NADH dehydrogena 31.3 32 0.00083 15.0 1.9 34 262-295 23-56 (158)
129 cd01121 Sms Sms (bacterial rad 31.1 23 0.00059 16.0 1.2 58 165-228 107-168 (372)
130 PRK05038 consensus 30.7 23 0.0006 16.0 1.1 42 273-316 227-274 (315)
131 PRK06552 keto-hydroxyglutarate 30.7 29 0.00075 15.3 1.6 122 175-307 47-177 (209)
132 PRK09228 guanine deaminase; Pr 30.4 39 0.001 14.5 2.6 17 31-47 30-46 (429)
133 cd04673 Nudix_Hydrolase_15 Mem 30.2 39 0.001 14.4 2.5 15 30-44 2-16 (122)
134 PRK07326 short chain dehydroge 29.4 21 0.00053 16.3 0.7 13 44-56 11-23 (235)
135 COG5441 Uncharacterized conser 29.0 31 0.00079 15.2 1.5 83 80-166 187-283 (401)
136 PRK09356 imidazolonepropionase 28.9 36 0.00092 14.7 1.8 20 31-50 28-47 (401)
137 PRK07205 hypothetical protein; 28.8 42 0.0011 14.3 2.3 35 29-64 98-132 (444)
138 COG1412 Uncharacterized protei 28.5 16 0.0004 17.1 -0.0 66 54-127 51-121 (136)
139 pfam02593 DUF166 Uncharacteriz 28.4 23 0.0006 16.0 0.8 89 66-166 46-143 (215)
140 pfam02424 ApbE ApbE family. Th 28.4 41 0.001 14.3 2.0 30 4-35 31-60 (254)
141 pfam06427 UDP-g_GGTase UDP-glu 28.4 36 0.00092 14.7 1.8 55 175-233 56-110 (210)
142 PRK00042 tpiA triosephosphate 28.1 43 0.0011 14.2 3.3 41 263-304 203-244 (251)
143 KOG1255 consensus 27.8 43 0.0011 14.2 2.2 31 23-58 27-58 (329)
144 PRK05678 succinyl-CoA syntheta 27.5 43 0.0011 14.2 2.1 26 33-58 2-28 (289)
145 cd04696 Nudix_Hydrolase_37 Mem 27.4 44 0.0011 14.1 3.8 41 27-67 1-53 (125)
146 PRK12494 NADH dehydrogenase su 27.4 26 0.00067 15.6 0.9 35 261-295 36-70 (172)
147 TIGR00676 fadh2 5,10-methylene 27.2 44 0.0011 14.1 2.6 25 165-192 161-185 (302)
148 COG1574 Predicted metal-depend 27.1 44 0.0011 14.1 3.1 23 25-47 18-40 (535)
149 TIGR01524 ATPase-IIIB_Mg magne 27.0 15 0.00039 17.2 -0.3 54 70-129 506-562 (892)
150 PRK00885 phosphoribosylamine-- 27.0 45 0.0011 14.1 3.6 77 49-131 8-94 (424)
151 PRK06427 phosphomethylpyrimidi 26.9 45 0.0011 14.1 3.2 45 274-321 158-207 (266)
152 KOG3549 consensus 26.8 45 0.0011 14.1 2.9 52 51-102 115-177 (505)
153 KOG0881 consensus 26.5 37 0.00096 14.6 1.6 26 55-80 93-118 (164)
154 TIGR02495 NrdG2 anaerobic ribo 26.4 46 0.0012 14.0 4.9 50 274-323 79-138 (220)
155 KOG1682 consensus 26.2 46 0.0012 14.0 4.2 45 11-58 60-111 (287)
156 pfam00298 Ribosomal_L11 Riboso 26.1 31 0.0008 15.1 1.1 27 84-113 1-28 (69)
157 TIGR03179 gua_deam guanine dea 25.8 47 0.0012 13.9 2.6 16 31-46 29-44 (427)
158 cd03118 alpha_CA_V Carbonic an 25.7 34 0.00087 14.9 1.3 12 73-84 64-75 (236)
159 TIGR01469 cobA_cysG_Cterm urop 25.7 24 0.00061 15.9 0.4 57 72-128 51-111 (242)
160 PRK10991 fucI L-fucose isomera 25.1 48 0.0012 13.8 5.8 67 5-84 23-92 (588)
161 PRK07246 bifunctional ATP-depe 25.0 48 0.0012 13.8 3.6 29 77-105 270-299 (820)
162 cd00562 NifX_NifB This CD repr 25.0 48 0.0012 13.8 2.7 33 89-127 54-86 (102)
163 KOG0202 consensus 24.9 27 0.00068 15.6 0.6 27 101-128 578-605 (972)
164 TIGR02213 lolE_release lipopro 24.6 18 0.00047 16.7 -0.3 15 52-66 60-74 (416)
165 COG1683 Uncharacterized conser 24.3 34 0.00086 14.9 1.0 90 22-126 49-144 (156)
166 PRK12413 phosphomethylpyrimidi 24.2 21 0.00053 16.3 -0.1 25 273-297 152-176 (253)
167 COG0106 HisA Phosphoribosylfor 24.1 48 0.0012 13.9 1.8 126 31-175 5-143 (241)
168 COG0800 Eda 2-keto-3-deoxy-6-p 24.0 46 0.0012 14.0 1.6 50 174-229 46-95 (211)
169 PRK13168 rumA 23S rRNA 5-methy 23.6 45 0.0012 14.0 1.5 14 77-90 79-92 (440)
170 PRK00129 upp uracil phosphorib 23.0 29 0.00073 15.4 0.4 18 274-291 138-155 (208)
171 PRK09954 hypothetical protein; 22.7 53 0.0014 13.6 3.1 97 30-131 33-141 (362)
172 pfam03254 XG_FTase Xyloglucan 22.6 27 0.00068 15.6 0.2 25 278-302 408-432 (477)
173 cd00738 HGTP_anticodon HGTP an 22.4 27 0.00068 15.6 0.2 35 117-153 25-59 (94)
174 PRK09568 DNA primase large sub 22.4 36 0.00092 14.7 0.8 15 92-106 64-78 (306)
175 cd01303 GDEase Guanine deamina 22.2 55 0.0014 13.5 2.4 17 31-47 26-42 (429)
176 COG2185 Sbm Methylmalonyl-CoA 22.1 55 0.0014 13.5 2.5 39 274-312 79-120 (143)
177 TIGR00419 tim triosephosphate 22.0 52 0.0013 13.6 1.6 66 60-127 45-122 (244)
178 cd04687 Nudix_Hydrolase_28 Mem 21.7 56 0.0014 13.4 2.5 16 29-44 2-17 (128)
179 PRK12616 pyridoxal kinase; Rev 21.6 38 0.00098 14.5 0.9 49 273-321 158-208 (270)
180 PRK00553 ribose-phosphate pyro 21.6 47 0.0012 13.9 1.3 44 273-316 240-291 (340)
181 pfam10450 POC1 POC1 chaperone. 21.5 40 0.001 14.4 0.9 28 172-199 191-219 (223)
182 COG1212 KdsB CMP-2-keto-3-deox 21.4 57 0.0014 13.4 4.7 116 88-229 34-152 (247)
183 TIGR02637 RhaS rhamnose ABC tr 21.2 41 0.001 14.3 0.9 186 87-325 47-250 (307)
184 TIGR02515 IV_pilus_PilQ type I 21.2 56 0.0014 13.4 1.6 88 113-204 57-164 (464)
185 COG1979 Uncharacterized oxidor 20.8 58 0.0015 13.3 4.5 31 96-126 56-88 (384)
186 cd06311 PBP1_ABC_sugar_binding 20.8 52 0.0013 13.6 1.4 43 83-127 47-89 (274)
187 COG0220 Predicted S-adenosylme 20.7 59 0.0015 13.3 5.7 55 262-316 70-128 (227)
188 COG0328 RnhA Ribonuclease HI [ 20.7 59 0.0015 13.3 5.0 54 22-82 9-67 (154)
189 pfam02579 Nitro_FeMo-Co Dinitr 20.6 59 0.0015 13.3 3.0 35 87-127 44-78 (94)
190 cd00311 TIM Triosephosphate is 20.6 59 0.0015 13.3 3.8 41 263-304 198-239 (242)
191 cd03556 L-fucose_isomerase L-f 20.5 59 0.0015 13.2 6.5 67 5-84 19-88 (584)
192 pfam04319 NifZ NifZ domain. Th 20.4 59 0.0015 13.2 2.1 25 25-49 22-49 (75)
193 PRK10461 thiamine biosynthesis 20.4 60 0.0015 13.2 1.7 15 36-50 36-50 (351)
194 cd04730 NPD_like 2-Nitropropan 20.4 60 0.0015 13.2 4.9 40 83-127 67-106 (236)
195 TIGR00615 recR recombination p 20.4 57 0.0015 13.4 1.5 36 272-324 124-159 (205)
No 1
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=0 Score=857.75 Aligned_cols=345 Identities=37% Similarity=0.546 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCC
Q ss_conf 89999999999998708821888964799986998999984388769848999999730010698899905732115752
Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 (364)
Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~Gkt 85 (364)
+|++||++||+||+++.|.|+|||+||||||+||+|||+|||+++|+||||++||++||++++|||||||||||||+|||
T Consensus 2 ~d~~~M~~Al~lA~~~~g~t~pNP~VG~Vivk~g~iig~G~h~~~G~~HAEv~Al~~a~~~~~gatlYVTLEPC~H~GkT 81 (367)
T PRK10786 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRT 81 (367)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 87999999999998469987999999999998999999995788999899999999713431497699983573467989
Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHC
Q ss_conf 105556530134324663010121101243311001898896-2221012320012222011342220110102787720
Q gi|254780348|r 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 (364)
Q Consensus 86 ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkI 164 (364)
||||++||++||+|||||+.||||+|+|||+++|+++||+|+ |++++||..||++||++++++||||++|+|+|+||||
T Consensus 82 pPC~~aIi~agI~rVvia~~DPnp~v~GkGi~~L~~aGI~V~~g~l~~ea~~ln~~F~~~~~~~rP~VtlK~A~SlDGki 161 (367)
T PRK10786 82 PPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRT 161 (367)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCE
T ss_conf 45999999828988999688988212463699998769889974206679999899999986599759999812556661
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCC-----------CCCEEEEECCCCCCCHH
Q ss_conf 2113653222210135666764201440366312201345423544344443-----------44215764466899802
Q gi|254780348|r 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 (364)
Q Consensus 165 a~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~-----------~~P~riVld~~l~i~~~ 233 (364)
|..+|+|+||||++||++||+||+++||||||++|++.|||+||||+++... +||+|||+|++++++++
T Consensus 162 A~~~g~SkWIT~~~sR~~vH~LRa~~DAIlvG~~Tv~~DnP~Lt~R~~~~~~~~~~~~~~~~~~qP~RvVlD~~~r~~~~ 241 (367)
T PRK10786 162 AMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPE 241 (367)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf 40479764157477887999876518759978770043397644466776542112354324679818998179888815
Q ss_pred HHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCC----CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 21003444670798546554210110022322222333----22278899998607996999812389999999788988
Q gi|254780348|r 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364)
Q Consensus 234 ~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~----~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364)
+++|+... ++++++...+... ...+++++..+ ..||..+|+.|+++||++||||||++|+++||+++|||
T Consensus 242 ~~i~~~~~--~~~i~~~~~~~~~----~~~~v~~i~~~~~~~~ldl~~il~~L~~~gi~~lLVEgG~~l~~sfl~~~LvD 315 (367)
T PRK10786 242 HRIVQQPG--ETWFARTQEDSRE----WPETVRTLLLPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVD 315 (367)
T ss_pred HHHHCCCC--CEEEEEECHHHHH----HHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCC
T ss_conf 56536898--6799983612213----00687799964657887999999999975899899944799999998779853
Q ss_pred EEEEEEECEEECCCCCCCCC----CCCCCCCCCEEEEEEEECCCEEEEEEE
Q ss_conf 99999607432688752333----454544464054468867936999950
Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYIG 356 (364)
Q Consensus 310 El~ifiaP~ilG~~g~~s~~----~~~~~~~~~~l~~~~~ig~Dv~~~y~~ 356 (364)
|+++|+||++||+++.+.+- ..+.....|++.+++++|+|+++++++
T Consensus 316 el~~y~APkilG~~~~~~~~~~~~~~l~~a~~l~~~~~~~~G~Di~l~~~P 366 (367)
T PRK10786 316 ELIVYIAPKLLGSDARGLCELPGLEKLADAPQFKFSEIRHVGPDVCLHLVP 366 (367)
T ss_pred EEEEEECCHHHCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCCEEEEEEE
T ss_conf 978677477448999775667772488567475875689988818899983
No 2
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=824.87 Aligned_cols=342 Identities=39% Similarity=0.618 Sum_probs=316.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCCCCHHHHHHHHHHCCHH----------------------
Q ss_conf 999999998708821888964799986-998999984388769848999999730010----------------------
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA---------------------- 67 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G~~HAE~~al~~~~~~~---------------------- 67 (364)
|++||+||++++|+|.|||+||||||+ ||+|||+|||.++|.||||++||.+||+++
T Consensus 1 M~~AL~lA~k~~g~T~PNP~VGcViv~~ng~IVG~G~H~kaG~~HAE~~Al~~AG~~aRPeisLPkeanaLhefiCknhq 80 (393)
T TIGR00326 1 MKRALDLAKKGQGTTHPNPLVGCVIVKKNGEIVGEGFHQKAGEPHAEIHALRQAGENARPEISLPKEANALHEFICKNHQ 80 (393)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 93567666404310057986004898338758752466977887089999999766368865685135678887652267
Q ss_pred ---CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHH
Q ss_conf ---698899905732115752105556530134324663010121101243311001898896-2221012320012222
Q gi|254780348|r 68 ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143 (364)
Q Consensus 68 ---~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~ 143 (364)
||||+||||||||||||||||+++||++||+|||+++.||||.|+|||+++||++||||+ ++++++|..||++|.+
T Consensus 81 GvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplvaGkG~~~L~~aGIeV~~~~l~~~a~~lnk~Fl~ 160 (393)
T TIGR00326 81 GVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGKGIERLKQAGIEVTFGILKEEAEKLNKGFLK 160 (393)
T ss_pred CEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHCCHHHHH
T ss_conf 41207767981576688888715689997386148988865087222341479998669725440158986400056788
Q ss_pred HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCC-------
Q ss_conf 0113422201101027877202113653222210135666764201440366312201345423544344443-------
Q gi|254780348|r 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------- 216 (364)
Q Consensus 144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~------- 216 (364)
|+++++|||++|+|+|||||||+.++.||||||+.||.|||++|+.+||||||++||++|||.||+|+.+...
T Consensus 161 ~~~~G~Pf~~~K~A~sLDG~~A~a~~~SkWiTs~~aR~~a~~~R~~~~ai~vG~~TV~aDnP~Lt~R~~~~~~~~~~~Y~ 240 (393)
T TIGR00326 161 RMRTGLPFVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQSDAILVGGGTVRADNPALTARLDEATELLKALYK 240 (393)
T ss_pred HHCCCCCHHHHHHCCCCCCCEEECCCCCCEEECHHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHCC
T ss_conf 86068853245430465761020089975672768899999976460356875730351086112647774201333120
Q ss_pred ----CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCEE
Q ss_conf ----44215764466899802210034446707985465542101100223222223332--227889999860799699
Q gi|254780348|r 217 ----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSL 290 (364)
Q Consensus 217 ----~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~--~dl~~iL~~L~~~gi~~i 290 (364)
+||+|||||+.++|+...+++.+.....+++.+...+......+....+.++.... .++.++|.+|++++|+.|
T Consensus 241 ~~~LrQP~rvvl~~~~~i~~~~k~~~~~~a~tw~~~~~~~D~~~~~~l~~~~v~~~~le~~~~~~~~~~~~L~~r~~~~v 320 (393)
T TIGR00326 241 KENLRQPLRVVLDRQLRIPEEAKLIRDQVAPTWVITTKRADREKKKFLESLEVEIFPLEKERLTIEEVMEQLGKRGINSV 320 (393)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 65457980899546546773001010477767888356223023236111104564222354488999999874475489
Q ss_pred EECCHHHHHHHHHHCCCCCEEEEEEECEEECC-----CCCCCCC-----CCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 98123899999997889889999960743268-----8752333-----45454446405446886793699
Q gi|254780348|r 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCL 352 (364)
Q Consensus 291 LVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~-----~g~~s~~-----~~~~~~~~~~l~~~~~ig~Dv~~ 352 (364)
|||||+.|+.+|+++|+|||+++|+||+++|+ ...+... ..+....+|+..+.+++|+|++.
T Consensus 321 ~vEgG~~l~~~f~~~G~~d~l~~y~APkL~ggGvsll~~a~~~~~~~g~~~~~~al~~~~~~~~~iG~D~~~ 392 (393)
T TIGR00326 321 LVEGGPNLLGSFIDEGLVDELIIYIAPKLLGGGVSLLQEAPGLCAEPGFQKLADALNLKPLEISQIGDDILL 392 (393)
T ss_pred EEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCHHHHCCCCCCCHHHCCCCCCCC
T ss_conf 872158999999745843003424500331443100110552013211110000226871022100761025
No 3
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=408.63 Aligned_cols=144 Identities=51% Similarity=0.839 Sum_probs=140.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC
Q ss_conf 87789999999999998708821888964799986998999984388769848999999730010698899905732115
Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 (364)
Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~ 82 (364)
.+.+|++||++||++|+++.|.|.|||+||||||+||+|||+|||.++|+||||++||++|++.++|||+||||||||||
T Consensus 2 ~~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~ag~~a~Gat~yVTLEPCsH~ 81 (146)
T COG0117 2 SSELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMAGEAARGATAYVTLEPCSHY 81 (146)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCC
T ss_conf 52379999999999998508667899966699988999986660377899728999999758555787899972476668
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCC
Q ss_conf 752105556530134324663010121101243311001898896-2221012320012222011
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~ 146 (364)
||||||+++||++||+|||+|+.||||.|+|+|+.+|++|||+|+ +++++|++.+|++|+++++
T Consensus 82 GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~~ 146 (146)
T COG0117 82 GRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRMR 146 (146)
T ss_pred CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCC
T ss_conf 99964579999709888999952899301684699999769869960408999998888870169
No 4
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain; InterPro: IPR011549 Eubacterial riboflavin-specific deaminases have a zinc-binding domain, IPR002125 from INTERPRO, toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins related to riboflavin biosynthesis consist only of this domain and lack the zinc-binding domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0050661 NADP binding, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=396.68 Aligned_cols=209 Identities=33% Similarity=0.502 Sum_probs=189.8
Q ss_pred CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCC-C----------
Q ss_conf 42220110102787720211365322221013566676420144036631220134542354434444-3----------
Q gi|254780348|r 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-E---------- 216 (364)
Q Consensus 148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~-~---------- 216 (364)
++|||++|+|||||||||+.+|+|+|||++++|.+||+||+++||||||+|||++|||+||||..+.. .
T Consensus 1 ~~Pyv~lk~A~sLDGkiA~~~g~s~~It~e~ar~~Vh~lR~~~daIlvG~gTVlaDdP~LTv~~~~~~e~~~~~yk~~~L 80 (239)
T TIGR00227 1 GRPYVILKLAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELPEALQAEYKKENL 80 (239)
T ss_pred CCCEEEEECCCCCCHHHHCCCCCCCEECCHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCCCCCCCCHHHHHCCCHHHC
T ss_conf 99728972012324021126886534828789899998765619788747237721775567798874455421214551
Q ss_pred CCCEEEEECC----CCCCCHHHHHCCCC-CCCEEEEECCC-CCCCH---HHHCCCCCCCCCCCCCC---CHHHHHHHHHH
Q ss_conf 4421576446----68998022100344-46707985465-54210---11002232222233322---27889999860
Q gi|254780348|r 217 HSPMRIILDP----HFKLSLDSKIIKTA-LLAPVIIVTEN-DDPVL---ALAFRKKNINIIYCDCR---DLKKLLTILVG 284 (364)
Q Consensus 217 ~~P~riVld~----~l~i~~~~~l~~~~-~~~~~ii~~~~-~~~~~---~~~~~~~~v~vi~~~~~---dl~~iL~~L~~ 284 (364)
+||+|||+|+ .+|+|+++++|.+. ...|+||+++. .++.+ ...+.+.+++++..+.. +|+.+|+.|++
T Consensus 81 ~~PvRvv~DskqkW~~r~p~~~~~~~~~~Gka~t~~~ts~~~d~e~ekk~~~l~~~~~~~~~~~~~G~v~l~~Lm~~L~~ 160 (239)
T TIGR00227 81 RNPVRVVLDSKQKWRLRVPPTARLLNDEVGKAPTWVATSEPADEEKEKKVKELEDFGVEVIVLETKGRVDLKKLMEILYE 160 (239)
T ss_pred CCCCCEEEECCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHEEEEEECCCCCEECHHHHHHHHHH
T ss_conf 69951898267403215880117762167982579996243783010244310201447787187763368999999778
Q ss_pred C-CCCEEEECCHH-HHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCC-----CCCCEEEEEEEECCCEEEEEEE
Q ss_conf 7-99699981238-99999997889889999960743268875233345454-----4464054468867936999950
Q gi|254780348|r 285 R-GVTSLLVEGGA-AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIG 356 (364)
Q Consensus 285 ~-gi~~iLVEGG~-~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~-----~~~~~l~~~~~ig~Dv~~~y~~ 356 (364)
+ ||++||||||+ .|+++||++|||||+++|+||++|||..+|+..+..++ ..+|++.+.+++|+|+.++|+.
T Consensus 161 ~f~I~~~~vEgG~n~L~~~l~~~glVde~~~yiAPk~~GG~~Apt~v~~eGf~~m~d~~~l~~~~~~~iG~D~~l~~~~ 239 (239)
T TIGR00227 161 EFGIRSVMVEGGGNTLNGSLLKEGLVDEVIIYIAPKLLGGRDAPTLVDGEGFQKMADAPNLELKEIEQIGEDIVLTAKL 239 (239)
T ss_pred HHCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCEEEEEEC
T ss_conf 6394489996266899999982398208988860411266768875487564348876340000020048867999649
No 5
>PRK05625 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=375.58 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCC
Q ss_conf 12320012222011342220110102787720211365322221013566676420144036631220134542354434
Q gi|254780348|r 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 (364)
Q Consensus 133 ~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~ 212 (364)
+.++||+.|||++..+||||++|+|||+|||||. ++.+.||||+++|.++|+||+++||||||++|++.|||+||+|..
T Consensus 3 ~~~~ln~~~~~~~~~~RP~V~~k~A~SlDGkIa~-~~~~~~It~~~~r~~~h~LRa~~DaIlvG~~Tv~~D~P~Ltv~~~ 81 (239)
T PRK05625 3 DDEELAALYAYPDRLMRPYVRANFATSLDGAATT-KGRSGPLSGPADRRRFHALRALADVVLVGAGTVRAENYSLTVLSA 81 (239)
T ss_pred CHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCH
T ss_conf 9789874327987789983999998867568617-998636899999999999986468699724568701886543633
Q ss_pred --------CCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCC--CCCHHHHHHHH
Q ss_conf --------44434421576446689980221003444670798546554210110022322222333--22278899998
Q gi|254780348|r 213 --------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTIL 282 (364)
Q Consensus 213 --------~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~--~~dl~~iL~~L 282 (364)
....++|.|||+|+++++|+++++|+.....++++++++.+..+...+...++.++..+ ..|++++|+.|
T Consensus 82 ~~~~~r~~~g~~~~P~~vIld~~~~l~~~~~lf~~~~~~~li~~~~~~~~~~~~~l~~~~i~v~~~~~~~ldl~~il~~L 161 (239)
T PRK05625 82 ERRAARQARGQSENPPRAVVSSSLRLDPDARLFTDGEVPPIVLTSAAAPADRRRELAAKAEVVVVGGDDRVDLAAALDAL 161 (239)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCHHHHHHHH
T ss_conf 45666664167789918998289898955311136999989998898898999999858969995799987999999999
Q ss_pred HHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCC--CCCCCCEEEEEEEECCCEE-EEEEE
Q ss_conf 60799699981238999999978898899999607432688752333454--5444640544688679369-99950
Q gi|254780348|r 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEKNFMCVRRDYFGSDVC-LEYIG 356 (364)
Q Consensus 283 ~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~--~~~~~~~l~~~~~ig~Dv~-~~y~~ 356 (364)
+++||++|||||||+|+++|++++||||+++|+||+++|+++.+.+.... ....++++.+.+++|+|++ ++|.+
T Consensus 162 ~~~gi~~lLvEGG~~l~~sfl~~~LvDEl~l~iaP~iiGg~~~~~~~g~~~~~~~~rl~l~~~~~~~~~~~~~~y~~ 238 (239)
T PRK05625 162 AERGLRRILCEGGPTLLGSLLAAGLVDELCLTIAPRLVGGGAARIVDGPGFPTDELRLRLAHVLTDDDGVLLTRYVR 238 (239)
T ss_pred HHCCCCEEEECHHHHHHHHHHHCCCCEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEC
T ss_conf 97699989986279999999987985087431768677689987667988555331127401789289589998853
No 6
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=362.11 Aligned_cols=210 Identities=39% Similarity=0.556 Sum_probs=188.7
Q ss_pred CCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCC-CCCCCEEEEEC
Q ss_conf 34222011010278772021136532222101356667642014403663122013454235443444-43442157644
Q gi|254780348|r 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILD 225 (364)
Q Consensus 147 ~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~-~~~~P~riVld 225 (364)
++||||++|+|+|+|||||+.+|+|+||||+++|.++|+||+++||||||++|+++|||+||+|..+. ..+||.|||+|
T Consensus 1 ~~rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD 80 (218)
T COG1985 1 RGRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILD 80 (218)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEECCCCCCCCCCEEEEEC
T ss_conf 99963999999713676126798753673988999999999875989977667980288522424888766798799987
Q ss_pred CCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 6689980221003444670798546554210110022322222333--22278899998607996999812389999999
Q gi|254780348|r 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364)
Q Consensus 226 ~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~--~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364)
+++++|+++++|+.....|+++++++. +.+...+...+++++.++ ..|+..+|+.|+++||++||||||++|+++||
T Consensus 81 ~~~rlp~~~~v~~~~~~~p~~v~~~~~-~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i~~vlvEGG~~L~~s~l 159 (218)
T COG1985 81 SRLRLPLDSRVFRTGEGAPTIVVTTEP-EEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSVLVEGGATLNGSFL 159 (218)
T ss_pred CCCCCCCHHHHHCCCCCCCEEEEECCC-HHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHH
T ss_conf 898887133322068888489994684-3666778747977998486654899999999866672899843899999999
Q ss_pred HCCCCCEEEEEEECEEECCCCCCCCCCCCCC-----CCCCEEEEEEEECCCEEEEEEECC
Q ss_conf 7889889999960743268875233345454-----446405446886793699995074
Q gi|254780348|r 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358 (364)
Q Consensus 304 ~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~-----~~~~~l~~~~~ig~Dv~~~y~~k~ 358 (364)
++|||||+++|+||+++|+. .+.++..... ...|.+.+.+.+|+|++++|+++.
T Consensus 160 ~~glVDel~l~iaP~i~G~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g~d~~l~~~~~~ 218 (218)
T COG1985 160 EAGLVDELLLYIAPKILGGS-ARTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEYRVNG 218 (218)
T ss_pred HCCCCCEEEEEECCHHCCCC-CCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC
T ss_conf 77997189999833211788-865526766432110433215658997891899999789
No 7
>TIGR01508 rib_reduct_arch diaminohydroxyphosphoribosylaminopyrimidine reductase; InterPro: IPR006401 These sequences represent a specific reductase of riboflavin biosynthesis in the archaea, diaminohydroxyphosphoribosylaminopyrimidine reductase. It should not be confused with bacterial 5-amino-6-(5-phosphoribosylamino)uracil reductase. The intermediate 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine in riboflavin biosynthesis is reduced first and then deaminated in both archaea and fungi, opposite to the order in bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain fused to the reductase domain, which is similar to this protein but found in most bacteria. .
Probab=100.00 E-value=1.4e-45 Score=328.36 Aligned_cols=204 Identities=28% Similarity=0.454 Sum_probs=180.7
Q ss_pred CHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCC--------CCCCCCCEE
Q ss_conf 220110102787720211365322221013566676420144036631220134542354434--------444344215
Q gi|254780348|r 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--------GLQEHSPMR 221 (364)
Q Consensus 150 P~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~--------~~~~~~P~r 221 (364)
|||+...|||+|||+|+.++..-.||.++..+.+|+|||++||||||+|||++|||+||+... .++.++|+|
T Consensus 1 pYvi~n~a~S~DGkLat~~~~Q~~lSC~~D~~rv~~lRA~vDAvMVG~gTVl~DdP~LTv~~~~~~~~k~~rG~~PnP~R 80 (224)
T TIGR01508 1 PYVIVNVAMSLDGKLATKTREQSRLSCEEDLERVDELRAEVDAVMVGIGTVLADDPSLTVKKAELVEKKEERGKEPNPVR 80 (224)
T ss_pred CEEEEEEEEEEEEEEECCCCCCEEECCHHHHHHHHHHCCCCCEEEECCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCEE
T ss_conf 93899981034003203678723881556666674320125768865521760084442122124778873578759779
Q ss_pred EEECCCCCCCHHHHHCCCCCCCEEEEECCC-CCCCH---HHHCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 764466899802210034446707985465-54210---1100223222223332--22788999986079969998123
Q gi|254780348|r 222 IILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVL---ALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGG 295 (364)
Q Consensus 222 iVld~~l~i~~~~~l~~~~~~~~~ii~~~~-~~~~~---~~~~~~~~v~vi~~~~--~dl~~iL~~L~~~gi~~iLVEGG 295 (364)
||+|++.|+|+++++|++.. .|+|.++. .+.++ ...+..+++.|..+.. .+|+++|+.|+.+|+.+||||||
T Consensus 81 vVvds~~r~pl~ariL~~~A--~T~v~~s~~~~~Ekekk~~~l~~~gv~V~~~G~~~v~L~~lld~L~~kgv~rLmvEGG 158 (224)
T TIGR01508 81 VVVDSKLRVPLSARILNKEA--KTVVAVSEAEPEEKEKKVEELEKKGVEVVKFGEERVDLEKLLDILEDKGVRRLMVEGG 158 (224)
T ss_pred EEECCEECCCCCCEEECCCC--CEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 99712007898720446898--4599960478730367888777497489992478534689999987479709998248
Q ss_pred HHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCC-----CCCEEEEEEEECCCEEEEEE
Q ss_conf 8999999978898899999607432688752333454544-----46405446886793699995
Q gi|254780348|r 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355 (364)
Q Consensus 296 ~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~-----~~~~l~~~~~ig~Dv~~~y~ 355 (364)
|+|+++||+++||||+.+|+||++||+...|++.++.++. .+|++.+.+.+|+-+.++|.
T Consensus 159 G~Li~~l~~~~LvDEi~vy~aP~~~GGr~apt~~dGeGF~~v~e~p~leL~~~~r~~~G~~l~~~ 223 (224)
T TIGR01508 159 GTLIWSLIKENLVDEIRVYIAPKIIGGRDAPTLVDGEGFIAVEESPKLELKDVKRLGEGVVLELK 223 (224)
T ss_pred CEEEHHHHHCCCEEEEEEEECCEEECCCCCCEEEECCCEEEECCCEEEEEECEEEECCCEEEEEE
T ss_conf 51010223028435899988146762777880773772322115324687021570586489973
No 8
>pfam01872 RibD_C RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.
Probab=100.00 E-value=2.1e-43 Score=313.28 Aligned_cols=194 Identities=38% Similarity=0.543 Sum_probs=166.2
Q ss_pred CHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCC--CCCCEEEEECCC
Q ss_conf 220110102787720211365322221013566676420144036631220134542354434444--344215764466
Q gi|254780348|r 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPH 227 (364)
Q Consensus 150 P~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~--~~~P~riVld~~ 227 (364)
|||++|+|+|+|||||..+|+++|||+++++.++|.+|+++||||+|++|++.|||+||+|..... .++|.|||+|++
T Consensus 1 P~V~l~~A~SlDG~Ia~~~g~~~wis~~~~~~~~~~lR~~~daIlvG~~T~~~d~p~l~~r~~~~~~~~~~p~~vVl~~~ 80 (196)
T pfam01872 1 PYVILKFAISLDGKIAAAGGSSQWITGEEARADVHQLRAEADAILVGRGTVRADNPSLTVRWVKGRAAERQPPRVVVDST 80 (196)
T ss_pred CEEEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECHHHHHHHCCCCCEECCCCCCCCCCCEEEEECCC
T ss_conf 98999999969888599999867138977989999998618959974565211075651650476631369829998378
Q ss_pred CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC
Q ss_conf 89980221003444670798546554210110022322222333222788999986079969998123899999997889
Q gi|254780348|r 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 (364)
Q Consensus 228 l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~L 307 (364)
++++.++++|... . +.+++++...... .......+..|+..+++.|+++|+++||||||++|+++|+++||
T Consensus 81 l~~~~~~~~~~~~-~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~l~~L~~~g~~~ilveGG~~l~~~fl~~~L 151 (196)
T pfam01872 81 LRVPLDARVLNDD-A-PTLVATTEPADKE-------KVEKLKVLRVDLKELLRELKERGIRSLLVEGGATLAGSLLRAGL 151 (196)
T ss_pred CCCCCHHHHHCCC-C-CEEEEECCCCCHH-------HCCCCCCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCC
T ss_conf 8889212442589-9-8899983763254-------32122345789999999998679987999857999999976884
Q ss_pred CCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 889999960743268875233345454446405446886793699
Q gi|254780348|r 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 (364)
Q Consensus 308 vDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~ 352 (364)
|||+++|+||+++|++|.+.|-.......+|++++++++|+|+.+
T Consensus 152 iDE~~l~i~P~ilG~~g~~~f~~~~~~~~~l~l~~~~~~~~~~v~ 196 (196)
T pfam01872 152 VDELRLYIAPKLLGGGGRTLFGGEGFLALKLKLVSSEAIGNGVVL 196 (196)
T ss_pred CCEEEEEECCEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEC
T ss_conf 889899983667889997777889976767689889992991289
No 9
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=100.00 E-value=5.5e-44 Score=317.16 Aligned_cols=113 Identities=56% Similarity=0.913 Sum_probs=109.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCCCCHHHHHHHHHHCC-HHCCCEEEEECCCCCCCCCCCHH
Q ss_conf 999999998708821888964799986-9989999843887698489999997300-10698899905732115752105
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPC 88 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G~~HAE~~al~~~~~-~~~~atlyvtLEPC~h~GktppC 88 (364)
|++||++|++++|.|+|||+||||||+ ||+|||+|||+..|++|||++||+++++ .++|+|||||||||+|+|+||||
T Consensus 1 M~~Ai~lA~~~~g~t~pnP~VGaViv~~~g~Iis~g~~~~~g~~HAE~~Ai~~a~~~~~~g~tlyvTLEPC~~~g~tp~C 80 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLARGATLYVTLEPCSHHGKTPPC 80 (115)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHH
T ss_conf 97999999853798899999899999179989998847989974099999998523135797699986783478987549
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 55653013432466301012110124331100189
Q gi|254780348|r 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 (364)
Q Consensus 89 ~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G 123 (364)
+++|+++||+|||||+.||||+|+|+|+++||++|
T Consensus 81 a~ai~~~gI~~Vv~g~~DP~p~v~g~G~~~Lk~~G 115 (115)
T cd01284 81 VDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCC
T ss_conf 99999839299999675949774887899998675
No 10
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=7.3e-38 Score=275.82 Aligned_cols=144 Identities=28% Similarity=0.421 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCC----CHHHHHHHHHHCCH-----HCCCEEEEEC
Q ss_conf 89999999999998708821888964799986998999984388769----84899999973001-----0698899905
Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEE-----ARGATAYVTL 76 (364)
Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~----~HAE~~al~~~~~~-----~~~atlyvtL 76 (364)
.|+.||++||++|+++. ..+++|||||||+||+|||+|||+..|. +|||++||++|.+. +.++||||||
T Consensus 18 ~de~fM~~Al~~A~~a~--~~gevPVGaVIV~~g~IIa~g~N~~~~~~dpt~HAEi~Ai~~A~~~~~~~~L~~~tLYVTL 95 (178)
T PRK10860 18 SHEYWMRHALTLAKRAW--DEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTL 95 (178)
T ss_pred CHHHHHHHHHHHHHHHH--HCCCCCEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 99999999999999862--1799988999998999999975443367899867999999999999589766784799654
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC----CEEE-ECCCCHHHHHHHHHHHHCCCCCCH
Q ss_conf 73211575210555653013432466301012110124331100189----8896-222101232001222201134222
Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVD-RMMESEGKIFLHAYLTRQVEKRSH 151 (364)
Q Consensus 77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G----I~V~-~~~~~~~~~ln~~f~~~~~~~rP~ 151 (364)
|||.| |+.+|+++||+|||||+.||++.+.|+++++|+++| |+|. |++++||..|++.|| ...++++
T Consensus 96 EPC~M------Ca~Ai~~arI~rVv~ga~Dpk~g~~gs~~~~l~~~~~nh~ieV~~Gvle~E~~~Ll~~FF--~~~R~~~ 167 (178)
T PRK10860 96 EPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF--RMRRQEI 167 (178)
T ss_pred CCCHH------HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH--HHHHHCC
T ss_conf 87688------999999909798999637899997653888975569899948984858999999999999--9997366
Q ss_pred HHHHHCCC
Q ss_conf 01101027
Q gi|254780348|r 152 ITLKIAVS 159 (364)
Q Consensus 152 V~lK~A~S 159 (364)
.++|+|.+
T Consensus 168 ~~~k~a~~ 175 (178)
T PRK10860 168 KALKKAQR 175 (178)
T ss_pred HHHHHHHH
T ss_conf 76775653
No 11
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3e-23 Score=177.23 Aligned_cols=133 Identities=34% Similarity=0.464 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCC----CCCHHHHHHHHHHCCH-----HCCCEE
Q ss_conf 87789999999999998708821888964799986-9989999843887----6984899999973001-----069889
Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEAGEE-----ARGATA 72 (364)
Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~----G~~HAE~~al~~~~~~-----~~~atl 72 (364)
.+..|..||+.||.+|+++. .. -+.+||||||+ +|+||++|+-... ...|||++||+.|.+. ++|+||
T Consensus 4 ~~~~~~~~m~~al~~A~~a~-~~-ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tl 81 (152)
T COG0590 4 LSEKDEDFMREALKEAKKAG-DE-GEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTL 81 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HC-CCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 34505889999999999888-73-89977999991799889873377567788551499999999998608886787289
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC----CCCEEE-ECCCCHHHHHHHHHHH
Q ss_conf 9905732115752105556530134324663010121101243311001----898896-2221012320012222
Q gi|254780348|r 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ----KGIIVD-RMMESEGKIFLHAYLT 143 (364)
Q Consensus 73 yvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~----~GI~V~-~~~~~~~~~ln~~f~~ 143 (364)
|||||||.. |+-||+.+||+|||+|..||+....|....++.+ +.++|. +++++||..+.+.||.
T Consensus 82 yvT~EPC~M------CagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 82 YVTLEPCPM------CAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred EEECCHHHH------HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 986682899------9999998489949997325887665654021037777966676653300789999998741
No 12
>pfam00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region.
Probab=99.88 E-value=1.7e-22 Score=172.14 Aligned_cols=93 Identities=43% Similarity=0.633 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCC-CC---CCHHHHHHHHHHC-----CHHCCCEEEE
Q ss_conf 789999999999998708821888964799986-998999984388-76---9848999999730-----0106988999
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAY-GG---CPHAEVQALEEAG-----EEARGATAYV 74 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~-~G---~~HAE~~al~~~~-----~~~~~atlyv 74 (364)
+.|+.||++|+++|+++. .+.+||+||||||+ ||+||++|++.. .| ..|||++||.++. ...+++|+||
T Consensus 2 ~~de~~m~~A~~~A~~a~-~~~~~~~VGaviv~~~g~ii~~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~~lyv 80 (104)
T pfam00383 2 EWDEYFMRLALEAAKRAY-TPYSNFPVGAVIVKNDGGIIATGYNGENAGYDPTIHAERNAIRNAGRLGEGIKLEGATLYV 80 (104)
T ss_pred CHHHHHHHHHHHHHHHCC-CCCCCCCEEEEEECCCCCEEEEEECEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 789999999999998667-9889997899999279979998857075699963018999999999966997112632326
Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 057321157521055565301343246630
Q gi|254780348|r 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 (364)
Q Consensus 75 tLEPC~h~GktppC~~~ii~~gIk~Vvi~~ 104 (364)
|||||.+ |+.+|+++||+|||||+
T Consensus 81 T~ePC~m------C~~ai~~~gi~~Vvyg~ 104 (104)
T pfam00383 81 TLEPCGM------CRQAIIESGIKKVVFGT 104 (104)
T ss_pred CCCCHHH------HHHHHHHHCCCEEEECC
T ss_conf 9897699------99999996919999809
No 13
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.86 E-value=1.6e-21 Score=165.51 Aligned_cols=93 Identities=40% Similarity=0.569 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC-CCCC------------------------HHHHHHHH
Q ss_conf 9999999999998708821888964799986998999984388-7698------------------------48999999
Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------------------------HAEVQALE 61 (364)
Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~-~G~~------------------------HAE~~al~ 61 (364)
|+.||++|..+|++. +-|+..||||||++|+|||.||... .|.+ |||++||.
T Consensus 1 De~fM~lA~~~A~rS---~~~~~~VGaVIV~~~~iIs~GyNG~p~g~~~~~~~~~~~~~~~~~~~~~~~~~iHAE~nAi~ 77 (131)
T cd01286 1 DEYFMAIARLAALRS---TCPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAIL 77 (131)
T ss_pred CHHHHHHHHHHHHHC---CCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 988999999999866---99999868999979938966448998888874000331124443323222221789999999
Q ss_pred HHC---CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 730---01069889990573211575210555653013432466301012
Q gi|254780348|r 62 EAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 (364)
Q Consensus 62 ~~~---~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPn 108 (364)
+|. ...+|+|||||+|||.+ |+.+|+++||+|||+.-.=++
T Consensus 78 ~a~~~~~~~~g~tlYvT~~PC~~------Ca~~Ii~aGI~rVvy~~~y~~ 121 (131)
T cd01286 78 QAARHGVSLEGATLYVTLFPCIE------CAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred HHHHCCCCCCCCEEECCCCCHHH------HHHHHHHCCCCEEEECCCCCC
T ss_conf 99982998888666607897799------999999829999998997699
No 14
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.84 E-value=7.1e-21 Score=161.17 Aligned_cols=91 Identities=37% Similarity=0.621 Sum_probs=78.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCC--C--CCHHHHHHHHHHCCH-----HCCCEEEEECCCCC
Q ss_conf 999999998708821888964799986-9989999843887--6--984899999973001-----06988999057321
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG--G--CPHAEVQALEEAGEE-----ARGATAYVTLEPCS 80 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~--G--~~HAE~~al~~~~~~-----~~~atlyvtLEPC~ 80 (364)
|++||++|+++. ...+.+||||||+ ||+||++|+++.. + ..|||++||+++.++ .+|+|||||||||
T Consensus 1 M~~Ai~~A~~a~--~~g~~PvGaviv~~~g~ii~~g~N~~~~~~~~~~HaE~~ai~~a~~~~~~~~~~~~tly~TlEPC- 77 (109)
T cd01285 1 MRLAIELARKAL--AEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPC- 77 (109)
T ss_pred CHHHHHHHHHHH--HCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCH-
T ss_conf 979999999873--57999999999938997999980764668998634899999999987188766773577488985-
Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 15752105556530134324663010121
Q gi|254780348|r 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 (364)
Q Consensus 81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp 109 (364)
|.|+.+|+++||+|||||+.||+.
T Consensus 78 -----~mC~~Ai~~~gI~~Vvyg~~~~~~ 101 (109)
T cd01285 78 -----PMCAGALLWARIKRVVYGASDPKL 101 (109)
T ss_pred -----HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf -----999999999592989999848998
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.81 E-value=2.9e-19 Score=150.30 Aligned_cols=118 Identities=36% Similarity=0.493 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC-CCC-------------------------HHH
Q ss_conf 877899999999999987088218889647999869989999843887-698-------------------------489
Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP-------------------------HAE 56 (364)
Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~-G~~-------------------------HAE 56 (364)
.|.-|+.||+.|.-.|.+ .|-|+-.||||||+|++||++||.... |.+ |||
T Consensus 5 ~~~wdeyfm~~A~l~a~R---stc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE 81 (164)
T COG2131 5 PSMWDEYFMAIAELVALR---STCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAE 81 (164)
T ss_pred CCHHHHHHHHHHHHHHHH---CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHH
T ss_conf 007999999999999987---43866545689986995998513888765677676676001222566235788999999
Q ss_pred HHHHHHHCC---HHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 999997300---1069889990573211575210555653013432466301012110124331100189889622
Q gi|254780348|r 57 VQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 (364)
Q Consensus 57 ~~al~~~~~---~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~ 129 (364)
.|||-+|.. ...|+|+|||..||. +|+..||++|||+||++..-++..+.--+.+.|+++||+++..
T Consensus 82 ~NAil~aa~~g~~~~~atlYvt~~PC~------~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~~ 151 (164)
T COG2131 82 QNAILQAARHGVGLEGATLYVTHFPCS------NCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQF 151 (164)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCH------HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999986478877708999824658------9999999828658995067775101377999998679537752
No 16
>KOG1018 consensus
Probab=99.71 E-value=7.8e-17 Score=133.93 Aligned_cols=139 Identities=29% Similarity=0.432 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECC----CCCCCHHHHHHHHH----HC----CHHCC
Q ss_conf 87789999999999998708821888964799986-99899998438----87698489999997----30----01069
Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEE----AG----EEARG 69 (364)
Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~----~~G~~HAE~~al~~----~~----~~~~~ 69 (364)
.+..|..||..|+++|+++. -++-+++||||+|+ ||++++.|++. +.+..|||+.||.+ ++ ...++
T Consensus 7 ~~~~~~~~m~~a~eea~ka~-d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~ 85 (169)
T KOG1018 7 LSDHDIAFMVEAVEEAKKAL-DEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSE 85 (169)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCCCCCCEEEEEEECCCEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCC
T ss_conf 23104799999999998614-67778865799994798077215640024478104457887762777754307244148
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC----CCCCCCCEE--E-ECCCCHHHHHHHHHH
Q ss_conf 889990573211575210555653013432466301012110124331----100189889--6-222101232001222
Q gi|254780348|r 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ----WLSQKGIIV--D-RMMESEGKIFLHAYL 142 (364)
Q Consensus 70 atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~----~L~~~GI~V--~-~~~~~~~~~ln~~f~ 142 (364)
.|+|||+||| |-|+.+|+.+||++||+|+.-+.+.-.|.-.. .|+..|.++ . ++..+++..+..+|+
T Consensus 86 ~tlyvt~ePc------~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~ 159 (169)
T KOG1018 86 TTLYVTCEPC------PMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFY 159 (169)
T ss_pred CEEEEEECCC------HHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEHHHHHCCCCCCEEECCCHHHHHHHHHHHHHC
T ss_conf 7799995544------8899999986997899801145311462441000123046786417622156677666777541
Q ss_pred HHCCCC
Q ss_conf 201134
Q gi|254780348|r 143 TRQVEK 148 (364)
Q Consensus 143 ~~~~~~ 148 (364)
-+....
T Consensus 160 ~~~n~~ 165 (169)
T KOG1018 160 VRDNPK 165 (169)
T ss_pred CCCCCC
T ss_conf 201357
No 17
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.71 E-value=2.8e-17 Score=136.88 Aligned_cols=87 Identities=44% Similarity=0.724 Sum_probs=76.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEE--ECCEEEEEEEC----CCCCCCHHHHHHHHHHCC--HHCCCEEEEECCCCCCC
Q ss_conf 99999999870882188896479998--69989999843----887698489999997300--10698899905732115
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT----AYGGCPHAEVQALEEAGE--EARGATAYVTLEPCSHY 82 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv--~~g~ii~~g~~----~~~G~~HAE~~al~~~~~--~~~~atlyvtLEPC~h~ 82 (364)
|+.|+++|+++. ...+|.+|||+|| ++|.+|+.|++ ...+..|||++||.+|.. ..++.|+|||||||.+
T Consensus 1 m~~A~~~a~~ay-~p~s~~pVGa~iv~~~~~~ii~~G~N~en~~~~~t~hAE~~Ai~~a~~~~~~~~~tlyvtl~PC~~- 78 (96)
T cd00786 1 MTEALKAADLGY-AKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGDTKGQMLYVALSPCGA- 78 (96)
T ss_pred CHHHHHHHHHCC-CCCCCCCEEEEEEEECCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEECEEECCCHHH-
T ss_conf 979999999656-988899889999987799799776461786679733799999999752258761107872299199-
Q ss_pred CCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 7521055565301343246630
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCV 104 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~ 104 (364)
|+++|+++|||+|||-+
T Consensus 79 -----C~q~I~e~gik~vvi~~ 95 (96)
T cd00786 79 -----CAQLIIELGIKDVIVVL 95 (96)
T ss_pred -----HHHHHHHHCCCCEEEEE
T ss_conf -----99999998899689996
No 18
>KOG3127 consensus
Probab=99.51 E-value=7.1e-14 Score=113.93 Aligned_cols=119 Identities=27% Similarity=0.492 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEE-EEEEECCEEEEEEECCCC-------------C----C-------CHHHHHH
Q ss_conf 7899999999999987088218889647-999869989999843887-------------6----9-------8489999
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYG-------------G----C-------PHAEVQA 59 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg-~viv~~g~ii~~g~~~~~-------------G----~-------~HAE~~a 59 (364)
+-|..||..|.-.|++- --||-.|| |++++++.|||.||...+ + . -|||.||
T Consensus 65 swd~yFM~iA~LsA~RS---kDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NA 141 (230)
T KOG3127 65 SWDDYFMAIAFLSAKRS---KDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENA 141 (230)
T ss_pred CHHHHHHHHHHHHHHHC---CCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHH
T ss_conf 68999999999999853---596566026997379879996037876777777775443442248776258885057789
Q ss_pred HHHHCC-HHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCEEE-ECCCC
Q ss_conf 997300-106988999057321157521055565301343246630101-21101243311001898896-22210
Q gi|254780348|r 60 LEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWLSQKGIIVD-RMMES 132 (364)
Q Consensus 60 l~~~~~-~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DP-np~v~gkGi~~L~~~GI~V~-~~~~~ 132 (364)
|.+++. ...++++||||=||+. |+..|+.+|||+|+++..+- +....--+...|..+|+... .+..+
T Consensus 142 i~~~~~~~~~~~~lYvtl~PC~~------Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i~~~ 211 (230)
T KOG3127 142 ILNKGRERVGGCSLYVTLCPCNE------CAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFIPPE 211 (230)
T ss_pred HHHHCCCCCCCCEEEEEECCHHH------HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 98717550477168986245688------89999985456504221113652777899999986386047750677
No 19
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=98.95 E-value=2.9e-08 Score=76.06 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=92.1
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442157644668998
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~ 231 (364)
|++-+|+|+||.|+. +++-.|-..+ ..++.-.. .....|++|.+|.-. | +.....-+.+.-+|++++...
T Consensus 2 i~~i~A~s~dG~Ig~-~~~lpW~~~~-~~~~Fk~~-t~~~~viMGRkT~es----l--~~~~~pl~~r~~iV~sr~~~~- 71 (167)
T COG0262 2 IILIVAVSLDGVIGR-DNSLPWHLPE-DLAHFKAT-TLGKPVIMGRKTYES----L--PGEWRPLPGRKNIVLSRNPDL- 71 (167)
T ss_pred EEEEEEECCCCCCCC-CCCCCCCCHH-HHHHHHHH-HCCCCEEECCCHHHH----H--HHCCCCCCCCEEEEECCCCCC-
T ss_conf 899999878883002-8988888878-98889875-269828971401444----2--112787999849998179876-
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCE
Q ss_conf 022100344467079854655421011002232-2222333222788999986079969998123899999997889889
Q gi|254780348|r 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKN-INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 (364)
Q Consensus 232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~-v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDE 310 (364)
...+ +.+ ..++.+++..+....-..|+|=||+.|+++||.++++||
T Consensus 72 -----------------------------~~e~~~~v----~~s~~~al~~~~~~~~~~i~IiGG~~l~~~~l~~~l~De 118 (167)
T COG0262 72 -----------------------------KTEGGVEV----VDSIEEALLLLLKEEGEDIFIIGGGELYRQFLPAGLADE 118 (167)
T ss_pred -----------------------------CCCCCEEE----ECCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCCE
T ss_conf -----------------------------67885898----489999999864167985999979999999850463338
Q ss_pred EEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 9999607432688752333454544464054468
Q gi|254780348|r 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 (364)
Q Consensus 311 l~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~ 344 (364)
+++++.|..+|++. +.+ .. .....|+++..+
T Consensus 119 l~lt~ip~~lg~Gd-~~F-p~-~~~~~~~~~~~~ 149 (167)
T COG0262 119 LILTIIPVLLGEGD-TLF-PE-GDPADWELVSSE 149 (167)
T ss_pred EEEEECCCCCCCCC-CCC-CC-CCHHHEEEEEEE
T ss_conf 99995440147777-457-87-451020786466
No 20
>TIGR02571 ComEB ComE operon protein 2; InterPro: IPR013404 This is encoded in the ComE operon for "late competence" as characterised in B. subtilis . The presence of a cytidine/deoxycytidine deaminase domain in these proteins means that they may perform this activity..
Probab=98.79 E-value=1.5e-08 Score=78.04 Aligned_cols=117 Identities=30% Similarity=0.460 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC-CCCC------------------HHHHHHHHHH--
Q ss_conf 789999999999998708821888964799986998999984388-7698------------------4899999973--
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------------------HAEVQALEEA-- 63 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~-~G~~------------------HAE~~al~~~-- 63 (364)
+-|+.||..+.-+|.+. |-..-+|||.||+|.+||+-||..- .|.. |||++||-+.
T Consensus 4 ~W~~yfm~q~~ll~~rs---tC~rl~vGativ~d~riiaGGynGs~~G~~hC~~~GC~~~d~hC~rtihaemna~lqCak 80 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRS---TCTRLSVGATIVRDKRIIAGGYNGSVAGEVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 (151)
T ss_pred CHHHHHHHHHHHHHHHH---HCCHHEECEEEEECCEEEECCCCCEECCCCEEECCCCEEEECCEEEHHHHHHHHHHHHHH
T ss_conf 36788888888875420---000000020454236266236453013772331277378617430036788999998864
Q ss_pred -CCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE-CCCCH
Q ss_conf -00106988999057321157521055565301343246630101211012433110018988962-22101
Q gi|254780348|r 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESE 133 (364)
Q Consensus 64 -~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~-~~~~~ 133 (364)
|....+|++|||-=||-. |+..|+++||++|++...=-|.. -.++.+++++|++.. -++.+
T Consensus 81 ~G~~t~~a~~yvt~fPCl~------C~k~~~q~Gi~~~~y~~~y~n~~---ya~~l~~~~~~~~~~~~~~~~ 143 (151)
T TIGR02571 81 FGVSTEEAEIYVTHFPCLQ------CTKSIIQAGIKKVYYAKDYKNDP---YALELLEKAGVELKKVEFDES 143 (151)
T ss_pred CCCCCCCCEEEEEECCHHH------HHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHCCCEEEEEECCHH
T ss_conf 0554366348985075678------99999986678746666325748---899998741531133203578
No 21
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=97.90 E-value=0.00029 Score=49.12 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=86.8
Q ss_pred HHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE--EEEECCCCCC
Q ss_conf 11010278772021136532222101356667642014403663122013454235443444434421--5764466899
Q gi|254780348|r 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFKL 230 (364)
Q Consensus 153 ~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~--riVld~~l~i 230 (364)
.+=+|++.||-|+.. |+--| ..++..++..+. ....++++|.+|... | +. ..-|- -+|++++...
T Consensus 2 ~lIvA~~~~~~IG~~-~~lPW-~~~~Dl~~F~~~-T~~~~viMGr~T~es----i----p~--~pLp~R~niVlSr~~~~ 68 (158)
T cd00209 2 SLIVAVDENGVIGKD-NKLPW-HLPEDLKHFKKT-TTGNPVIMGRKTFES----I----PR--RPLPGRTNIVLSRQLDY 68 (158)
T ss_pred EEEEEECCCCCEECC-CCCCC-CCHHHHHHHHHH-HCCCEEEEECCHHHH----C----CC--CCCCCCEEEEEECCCCC
T ss_conf 899998899956379-96255-088999999998-179809996673332----4----65--56899559999717887
Q ss_pred CHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCE
Q ss_conf 80221003444670798546554210110022322222333222788999986079969998123899999997889889
Q gi|254780348|r 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 (364)
Q Consensus 231 ~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDE 310 (364)
.. ..++.++ .+++++++.+. .....++|-||+.+..+||. ++|+
T Consensus 69 ~~-----------------------------~~~~~~~----~s~~~~l~~~~-~~~~~i~IiGG~~iY~~~l~--~~d~ 112 (158)
T cd00209 69 QD-----------------------------AEGVEVV----HSLEEALELAE-NTVEEIFVIGGAEIYKQALP--YADR 112 (158)
T ss_pred CC-----------------------------CCCCEEC----CCHHHHHHHHH-CCCCEEEEECHHHHHHHHHH--HCCE
T ss_conf 77-----------------------------8981862----99999999976-67884999578999999998--6197
Q ss_pred EEEEEECEEECCCCCCCCCCCCCCCCCCEEEE-EEEECC
Q ss_conf 99996074326887523334545444640544-688679
Q gi|254780348|r 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-RDYFGS 348 (364)
Q Consensus 311 l~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~-~~~ig~ 348 (364)
+++++-+....++ .++.... ...|++++ ...+.+
T Consensus 113 i~lT~I~~~~~~D---~~fp~~~-~~~~~~~~~~~~~~~ 147 (158)
T cd00209 113 LYLTRIHAEFEGD---TFFPEID-ESEWELVSEEEVFEE 147 (158)
T ss_pred EEEEEECCCCCCC---EECCCCC-HHHCEEEEEEECCCC
T ss_conf 9999878610688---7889999-788899997731477
No 22
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=97.77 E-value=0.00068 Score=46.59 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=91.7
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCC
Q ss_conf 0110102787720211365322221013566676420144036631220134542354434444344215--76446689
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFK 229 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~ 229 (364)
|.+=+|++.||-|+.. |+--| .-++..++..++ ....+|++|.+|... ....-|-| ||++++..
T Consensus 2 I~lI~A~~~n~~IG~~-~~LPW-~lp~Dlk~Fk~~-T~g~~vIMGRkT~eS-----------i~rpLp~R~nIVlTr~~~ 67 (159)
T PRK10769 2 ISLIAALAVDRVIGME-NAMPW-NLPADLAWFKRN-TLNKPVIMGRHTWES-----------IGRPLPGRKNIVLSSQPG 67 (159)
T ss_pred EEEEEEECCCCCEECC-CCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCCC-----------CCCCCCCCEEEEEECCCC
T ss_conf 7999998599957479-95343-888999999997-289809996574556-----------886799977999978898
Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364)
Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364)
...++.+ ..++.+++..+. ....|+|=||+.+..+++. ++|
T Consensus 68 -------------------------------~~~~~~~----~~s~~~al~~~~--~~~~i~IiGG~~IY~~~l~--~~d 108 (159)
T PRK10769 68 -------------------------------TDDRVTW----VKSVDEAIAACG--DVPEIMVIGGGRVYEQFLP--KAQ 108 (159)
T ss_pred -------------------------------CCCCEEE----ECCHHHHHHHHC--CCCEEEEECCHHHHHHHHH--HCC
T ss_conf -------------------------------7799599----999999999836--9980999739999999997--789
Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-------EEEEEEEC
Q ss_conf 9999960743268875233345454446405446886793-------69999507
Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-------VCLEYIGK 357 (364)
Q Consensus 310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-------v~~~y~~k 357 (364)
+++++.-.....++. -.| . .....|++++.+....| .+.+|.||
T Consensus 109 ~l~lT~I~~~~egD~-~fP--~-~d~~~w~~~~~e~~~~d~~n~~~~~f~~~~Rk 159 (159)
T PRK10769 109 KLYLTHIDAEVEGDT-HFP--D-YEPDEWESVFSEFHDADAQNSHSYCFEILERR 159 (159)
T ss_pred EEEEEEECCEECCCE-ECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 999999887367766-679--9-99799899999975888889997189999729
No 23
>KOG2771 consensus
Probab=97.74 E-value=0.0001 Score=52.19 Aligned_cols=100 Identities=25% Similarity=0.366 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCEEEEEEECCCCC-CC--HHHHHHHHHH------C----------
Q ss_conf 89999999999998708821888964799986--99899998438876-98--4899999973------0----------
Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGG-CP--HAEVQALEEA------G---------- 64 (364)
Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~--~g~ii~~g~~~~~G-~~--HAE~~al~~~------~---------- 64 (364)
...++|+.+|..|..+ .+ +++||++|+. -..|++.|.-...- .| |+-+++++.. +
T Consensus 166 ~~~ri~e~~I~~a~~~--~~--~~~~~a~I~~p~~~~Via~~~~~~~~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~ 241 (344)
T KOG2771 166 EIARIGELLIAMATDG--HA--SRPVSAAIVDPVMDRVIAAGTGEVCAYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLL 241 (344)
T ss_pred HHHHHHHHHHHHHHHH--CC--CCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9999998999998640--02--5676504557861337744777422347488889999999999875365444446100
Q ss_pred -------------------CHH--------CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf -------------------010--------69889990573211575210555653013432466301012110124331
Q gi|254780348|r 65 -------------------EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 (364)
Q Consensus 65 -------------------~~~--------~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~ 117 (364)
+.. .|-++|+|.|||.. |+-|++.+.|+||+++.. ++ ++| |+.
T Consensus 242 ~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~M------CsMALvHsRikRvfy~~~--~s-~~G-~L~ 311 (344)
T KOG2771 242 IFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAM------CSMALVHSRIKRVFYCKP--MS-TAG-GLG 311 (344)
T ss_pred CCCCCCCHHHHHHCHHCCCCCCCCCCCEEEECCEEEEECCHHHH------HHHHHHHHHHHHEEECCC--CC-CCC-CCC
T ss_conf 13520003555301000455223666636434337873473888------899998876430365357--77-777-754
Q ss_pred CC
Q ss_conf 10
Q gi|254780348|r 118 WL 119 (364)
Q Consensus 118 ~L 119 (364)
-+
T Consensus 312 s~ 313 (344)
T KOG2771 312 SL 313 (344)
T ss_pred CE
T ss_conf 12
No 24
>pfam00186 DHFR_1 Dihydrofolate reductase.
Probab=97.67 E-value=0.0011 Score=45.11 Aligned_cols=140 Identities=18% Similarity=0.222 Sum_probs=87.6
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCC
Q ss_conf 0110102787720211365322221013566676420144036631220134542354434444344215--76446689
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFK 229 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~ 229 (364)
+.+=+|++.+|-|.. +|+--| .-++..++..++ ..-.+|++|.+|... =| ..-|-| ||++++..
T Consensus 2 i~lI~A~~~n~~IG~-~~~LPW-~l~~Dl~~Fk~~-T~~~~vIMGRkT~eS-ip----------~pLp~R~niVlsr~~~ 67 (159)
T pfam00186 2 ISLIVAVDKNGVIGK-DNDLPW-HLPEDLKHFKAL-TMGKPIIMGRKTFES-IG----------RPLPGRTNIVLTRNPD 67 (159)
T ss_pred EEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-HCCCCEEEECCCCCC-CC----------CCCCCCEEEEEECCCC
T ss_conf 799999879995607-995154-478999999998-589929996671334-66----------4599974999963566
Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364)
Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364)
.. ..++.++ .+++++++.+. +...++|=||+++..+|+. ++|
T Consensus 68 ~~------------------------------~~~~~v~----~s~~~al~~~~--~~~~i~ViGG~~iY~~~l~--~~~ 109 (159)
T pfam00186 68 FK------------------------------AEGVEVV----HSLEEALALAA--GEEEIFIIGGAEIYKQALP--YAD 109 (159)
T ss_pred CC------------------------------CCCCEEE----CCHHHHHHHHC--CCCCEEEECHHHHHHHHHH--HCC
T ss_conf 68------------------------------9985898----99999999724--8883999886999999998--789
Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 99999607432688752333454544464054468867
Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347 (364)
Q Consensus 310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig 347 (364)
++++++-..-.-++ .++... ....|++++.+...
T Consensus 110 ~i~lT~I~~~~~~D---~~fP~i-d~~~w~~~~~~~~~ 143 (159)
T pfam00186 110 RLYLTEIDAEFEGD---TFFPEI-DLSEWELVSREEHP 143 (159)
T ss_pred EEEEEEECCEECCC---EECCCC-CHHHCEEEEEEECC
T ss_conf 99999989736676---787989-96789999999637
No 25
>PRK06848 hypothetical protein; Validated
Probab=97.52 E-value=0.0018 Score=43.76 Aligned_cols=88 Identities=23% Similarity=0.291 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEE
Q ss_conf 968778999999999999870882188896479998-69989999843887----6984899999973---001069889
Q gi|254780348|r 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATA 72 (364)
Q Consensus 1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atl 72 (364)
|++|..|+..++.|.+..++.- .-+-+ .|||.+. +||+|+ +|..... -+.-||..||-.| |+.- -.++
T Consensus 1 m~l~~~d~eLi~~A~~a~~~aY-~ps~~-~VgAAll~~dG~i~-tG~NvENasy~~~~CAEr~Ai~~Avs~G~~~-~~~i 76 (139)
T PRK06848 1 MPLNSEDYELIKAAEKVIEKRY-RNDWH-HVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDAG-IDTI 76 (139)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-CCCCC-CEEEEEEECCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEE
T ss_conf 9989899999999999999658-99999-73899993899999-9865236767855178999999999879975-5899
Q ss_pred EEE--------------CCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 990--------------57321157521055565301343
Q gi|254780348|r 73 YVT--------------LEPCSHYGRSPPCAQFIIECGIR 98 (364)
Q Consensus 73 yvt--------------LEPC~h~GktppC~~~ii~~gIk 98 (364)
.+. +-|| +.|-+.|.+.+-.
T Consensus 77 v~v~~~~~~~~~~~~~~~sPC------G~CRQvl~Ef~~~ 110 (139)
T PRK06848 77 VAVRHPKPHEDDREIRVVSPC------GACRELISDYDKN 110 (139)
T ss_pred EEEECCCCCCCCCCCCCCCCC------HHHHHHHHHHCCC
T ss_conf 999605888777765221782------7899999997899
No 26
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=97.51 E-value=0.0027 Score=42.53 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=83.4
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110102787720211365322221013566676420------------1440366312201345423544344443442
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------------QSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P 219 (364)
..+-.|++.++-|.. +|+--|= -++..++..++-. .-.||++|.+|-.. ++....+-|
T Consensus 10 ~slIvA~~~n~gIG~-~n~LPW~-lp~Dmk~Fk~iTT~~~~~~~~~~~~~~NaVIMGRKTweS--------IP~k~RPLp 79 (512)
T PTZ00164 10 FSIVVAVDENRGIGD-KGTLPWK-IPEDMKFFRRVTTYVRPKKVEKSPKKQNAVVMGRKTWES--------IPKKFRPLK 79 (512)
T ss_pred CEEEEEECCCCCCCC-CCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHH--------CCCCCCCCC
T ss_conf 439999889981446-9810674-989999999974587655555666778179973775765--------898788895
Q ss_pred EE--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 15--7644668998022100344467079854655421011002232222233322278899998607996999812389
Q gi|254780348|r 220 MR--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 (364)
Q Consensus 220 ~r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~ 297 (364)
-| |||+++..... ++.+...-...++.+.......++..++|=||+.
T Consensus 80 nR~NIVLSr~~~~~~-------------------------------~~~~~~si~~al~~l~~~~~~~~~e~iFVIGG~~ 128 (512)
T PTZ00164 80 NRINVVLSRTLTKEE-------------------------------LLLVVPDLEDALRLLARPLYNLSIEKIFIIGGSQ 128 (512)
T ss_pred CCEEEEECCCCCCCC-------------------------------CCEEECCHHHHHHHHHHHHHHCCCCEEEEEECHH
T ss_conf 691899899897678-------------------------------9615688999999997567526887089981799
Q ss_pred HHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEE--EECCCE---EEEEEECC
Q ss_conf 99999978898899999607432688752333454544464054468--867936---99995074
Q gi|254780348|r 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD--YFGSDV---CLEYIGKN 358 (364)
Q Consensus 298 l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~--~ig~Dv---~~~y~~k~ 358 (364)
+...+|+.+++|++|++.-..-.-.+. ++... ..+|++..+. ...+++ +++|.+++
T Consensus 129 IY~eaL~~~~~~~IylT~I~~~~ecDt---FFP~i--d~~f~~~~~S~~~~~~~~~y~f~~y~~~~ 189 (512)
T PTZ00164 129 VYREALDANLLQKIYLTRINKAYECDV---FFPEI--PENFQITQISQTFSSNGTSYDFVKYEPKD 189 (512)
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCC---CCCCC--CCCCCEEECCCEECCCCCEEEEEEEECCC
T ss_conf 999884422488899986156214764---17888--86442332131231588147778984455
No 27
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=96.79 E-value=0.0063 Score=40.07 Aligned_cols=89 Identities=27% Similarity=0.337 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEEEEE-----CCCC
Q ss_conf 9999998708821888964799986-9989999843887----6984899999973---001069889990-----5732
Q gi|254780348|r 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATAYVT-----LEPC 79 (364)
Q Consensus 13 ~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atlyvt-----LEPC 79 (364)
+|++.+.+. ..-.-|=.|||+++. ||+|. .|..... .+-|||..||..+ |..-...+++++ .-||
T Consensus 3 ~a~~~~~~a-y~pyS~f~Vga~~~~~~G~i~-~G~nvEna~~~~~~cAEr~ai~~~~~~g~~~~~~~~~~~~~~~~~sPC 80 (112)
T cd01283 3 AALAAAEFA-YAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSPC 80 (112)
T ss_pred HHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEEECCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 799998467-688679912099993899899-989870677887511889999999982898549999993899756873
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 115752105556530134324663010121
Q gi|254780348|r 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 (364)
Q Consensus 80 ~h~GktppC~~~ii~~gIk~Vvi~~~DPnp 109 (364)
-+ |.+.|.+..-.++.+-..+++-
T Consensus 81 G~------CrQ~l~Ef~~~~~~i~~~~~~g 104 (112)
T cd01283 81 GA------CRQVLAEFLPSRLYIIIDNPKG 104 (112)
T ss_pred HH------HHHHHHHHCCCCCEEEEECCCC
T ss_conf 46------8999998678996899997999
No 28
>PRK05578 cytidine deaminase; Validated
Probab=95.46 E-value=0.14 Score=30.87 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHC---CHHCCCEEEEECC----
Q ss_conf 999999999870882188896479998-6998999984388----769848999999730---0106988999057----
Q gi|254780348|r 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAG---EEARGATAYVTLE---- 77 (364)
Q Consensus 10 ~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~---~~~~~atlyvtLE---- 77 (364)
.++.|. .|++....-+-|=.|||.+. +||+|+ .|.... ..+-+||..||-.|- ...- -.+.|+=+
T Consensus 6 L~~~A~-~a~~~AyaPYS~F~VGAall~~~G~i~-~G~NvEnasy~~~~CAEr~Ai~~avs~g~~~i-~~iav~~~~~~~ 82 (132)
T PRK05578 6 LIEAAV-EASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGGRL-VAIACVGETGEP 82 (132)
T ss_pred HHHHHH-HHHHHCCCCCCCCEEEEEEEECCCCEE-EEEEEECCCCCCCCCHHHHHHHHHHHCCCCCE-EEEEEECCCCCC
T ss_conf 999999-999836698568806799990899899-98976057888775577999999986489737-899998489982
Q ss_pred --CCCCCCCCCHHHHHHHHCC
Q ss_conf --3211575210555653013
Q gi|254780348|r 78 --PCSHYGRSPPCAQFIIECG 96 (364)
Q Consensus 78 --PC~h~GktppC~~~ii~~g 96 (364)
|| +-|-+.|.+..
T Consensus 83 ~~PC------G~CRQvl~Ef~ 97 (132)
T PRK05578 83 LSPC------GRCRQVLAEFG 97 (132)
T ss_pred CCCC------HHHHHHHHHHC
T ss_conf 6975------24899999856
No 29
>KOG1324 consensus
Probab=95.43 E-value=0.092 Score=32.20 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=74.5
Q ss_pred HHHCCCHHHHCCCCCCCCCCC-CCHHHHHHHHHH------HHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC----EEE
Q ss_conf 101027877202113653222-210135666764------201440366312201345423544344443442----157
Q gi|254780348|r 154 LKIAVSQDNMIGMAGCGSVPI-TGFISKNQVHLL------RAQSDAILVGIGTVLADDPELTCRLNGLQEHSP----MRI 222 (364)
Q Consensus 154 lK~A~SlDGkIa~~~g~s~wI-T~~~sr~~vh~l------Ra~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P----~ri 222 (364)
+-.|+|-+.-|. ++|.--|- -+ ..++.+.+ -++..|+++|.+|--. ++. .+.| +-|
T Consensus 6 ~Vva~~~~mGIG-k~g~LPW~lps--emkyF~~vT~~tsd~~k~NaViMGRKtweS--------iP~--k~RPL~gRiNi 72 (190)
T KOG1324 6 LVVALSPNMGIG-KNGDLPWPLPS--EMKYFRRVTTSTSDPSKKNAVIMGRKTWES--------IPE--KFRPLPGRINV 72 (190)
T ss_pred EEEEECCCCCCC-CCCCCCCCCHH--HHHHHHHHHHCCCCCCCCCEEEECCCCCCC--------CCC--CCCCCCCCEEE
T ss_conf 999975566756-47878988778--889999875404775533048961231011--------873--45889985579
Q ss_pred EECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCEEEECCHHHH
Q ss_conf 644668998022100344467079854655421011002232222233322278899998607----9969998123899
Q gi|254780348|r 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAV 298 (364)
Q Consensus 223 Vld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~----gi~~iLVEGG~~l 298 (364)
||++++.-+. . ....++ . ..+++..|+.|.+. .+..|+|-||+.+
T Consensus 73 VLSR~~~~~~----~---~t~~~~----------------------~--~~slesAl~lL~~pp~~~~ve~vfvIGG~~v 121 (190)
T KOG1324 73 VLSRSLKEDF----A---PTENVF----------------------L--SSSLESALDLLEEPPSSNSVEMVFVIGGSEV 121 (190)
T ss_pred EEECCCCCCC----C---CCCCEE----------------------E--ECCHHHHHHHHCCCCCCCCEEEEEEECCHHH
T ss_conf 9944667566----7---756789----------------------8--3139999985138853352147999868899
Q ss_pred HHHHHHCCCCCEEEEEEECEEECCCC
Q ss_conf 99999788988999996074326887
Q gi|254780348|r 299 AHSFINSRLVDSIILYRSQIVIGEGG 324 (364)
Q Consensus 299 ~~sfl~~~LvDEl~ifiaP~ilG~~g 324 (364)
.+..|.+...|.++++.--+-+-.+.
T Consensus 122 y~~al~~p~~~~i~~T~I~~~~~cDt 147 (190)
T KOG1324 122 YSEALNSPRCDAIHITEIFQSFECDT 147 (190)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCCC
T ss_conf 99987387755289887324677554
No 30
>PRK12411 cytidine deaminase; Provisional
Probab=95.07 E-value=0.26 Score=29.21 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEEEEEC--
Q ss_conf 999999999999870882188896479998-69989999843887----6984899999973---0010698899905--
Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATAYVTL-- 76 (364)
Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atlyvtL-- 76 (364)
+++.++.|.+..++ ...-+-|=.|||+++ +||+|+ .|.+... .+-+||..||-.+ |+.-. .+++|+=
T Consensus 3 ~~~L~~~A~~a~~~-AYaPYS~F~VGAall~~~G~i~-~G~NvEnasy~~t~CAEr~Ai~~avs~g~~~~-~~I~v~~~~ 79 (132)
T PRK12411 3 SKQLIQEAIEARKQ-AYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEF-VAIAIVADT 79 (132)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCCEEEEEEEECCCCEE-EEECCCCCCCCCCEEHHHHHHHHHHHCCCCCE-EEEEEECCC
T ss_conf 89999999999971-8288679959999995899999-98741567788751337779999986488768-999998689
Q ss_pred ----CCCCCCCCCCHHHHHHHHCC--CCEEEEECC
Q ss_conf ----73211575210555653013--432466301
Q gi|254780348|r 77 ----EPCSHYGRSPPCAQFIIECG--IRRVVVCVD 105 (364)
Q Consensus 77 ----EPC~h~GktppC~~~ii~~g--Ik~Vvi~~~ 105 (364)
-|| +.|-+.|.+.. --+|++...
T Consensus 80 ~~~~~PC------G~CRQvl~Ef~~~~~~i~~~~~ 108 (132)
T PRK12411 80 KRPVPPC------GACRQVMVELCKQDTKVYLSNL 108 (132)
T ss_pred CCCCCCC------HHHHHHHHHHCCCCCEEEEECC
T ss_conf 9867973------8889999996689957999859
No 31
>KOG0833 consensus
Probab=94.33 E-value=0.47 Score=27.42 Aligned_cols=92 Identities=22% Similarity=0.164 Sum_probs=58.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEEEEE------C
Q ss_conf 99999999870882188896479998-69989999843887----6984899999973---001069889990------5
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATAYVT------L 76 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atlyvt------L 76 (364)
+..++..|++-...-.-+=.||||+. ++|+|. .|..-.. .+-|||.-|+.++ |++---+-+.++ -
T Consensus 24 L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f~ 102 (173)
T KOG0833 24 LLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDFT 102 (173)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 999999999853488557844789970598389-8513214677776219999999999707654147999953788767
Q ss_pred CCCCCCCCCCHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 7321157521055565301343-24663010121
Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIR-RVVVCVDDPDV 109 (364)
Q Consensus 77 EPC~h~GktppC~~~ii~~gIk-~Vvi~~~DPnp 109 (364)
.||-| |.+.|.+.+-. .|.....+...
T Consensus 103 tPCG~------CRQfl~Ef~~~~~l~~~~~n~~~ 130 (173)
T KOG0833 103 TPCGV------CRQFLREFGNASLLLEYRANCLY 130 (173)
T ss_pred CCCHH------HHHHHHHHHHCCEEEEECCCCCC
T ss_conf 97588------99999998414004640478754
No 32
>PRK08298 cytidine deaminase; Validated
Probab=93.06 E-value=0.81 Score=25.83 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-EECCEEEEEEECC----CCCCCHHHHHHHHHH---CCHHCCC------
Q ss_conf 7899999999999987088218889647999-8699899998438----876984899999973---0010698------
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTA----YGGCPHAEVQALEEA---GEEARGA------ 70 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~vi-v~~g~ii~~g~~~----~~G~~HAE~~al~~~---~~~~~~a------ 70 (364)
+.|+.....|+++-++..-.-+ -|+|.+ .+||+|+ +|..- ...+-.||..|+-+| |+....+
T Consensus 2 ~~~q~Lv~~A~~~~~~ry~~~~---~gaAAllt~dG~I~-tG~NvEnasy~~~lCAEr~Ai~~Avs~G~r~~~~I~V~~~ 77 (128)
T PRK08298 2 NIEQALYDAAKELLEQRYPNGW---GGAAAMRTEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKRVTHSICVARE 77 (128)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC---CEEEEEEECCCCEE-EEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 4789999999999997474667---53899994799799-9742155667745157789999999769946999999916
Q ss_pred ---EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf ---899905732115752105556530134324663010121
Q gi|254780348|r 71 ---TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 (364)
Q Consensus 71 ---tlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp 109 (364)
.-+.-|-|| +-|-+.|.+.| ..+-+...|||-
T Consensus 78 ~~~~~~~vl~PC------G~CRQ~L~Efg-~d~~V~v~~~d~ 112 (128)
T PRK08298 78 NEHSPLKVLSPC------GVCQERLFYWG-PDVMVAVTNADD 112 (128)
T ss_pred CCCCCEEEECCC------HHHHHHHHHHC-CCCEEEEECCCC
T ss_conf 888872665897------79999999979-997899968999
No 33
>PRK09027 cytidine deaminase; Provisional
Probab=90.36 E-value=1.6 Score=23.88 Aligned_cols=59 Identities=34% Similarity=0.564 Sum_probs=43.2
Q ss_pred CCCEEEEEE-ECCEEEEEEECC-CCCCC-----HHHHHHHHHH---CCHHCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 896479998-699899998438-87698-----4899999973---0010698899905732115752105556530
Q gi|254780348|r 28 NPSVACLIV-KDGIVIGRGVTA-YGGCP-----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 (364)
Q Consensus 28 NP~Vg~viv-~~g~ii~~g~~~-~~G~~-----HAE~~al~~~---~~~~~~atlyvtLEPC~h~GktppC~~~ii~ 94 (364)
+=.||||-. ..|++- .|... ..|.| |||.-|+.+| |++. =..+.|+--||-| |-+.+-+
T Consensus 70 ~F~VGAia~G~SG~~Y-~GaN~EF~g~~l~~sVHAEQ~aI~~Awl~gE~~-l~~iaVn~~PCGH------CRQFmnE 138 (295)
T PRK09027 70 HFNVGAIARGLSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEKG-IADITVNYTPCGH------CRQFMNE 138 (295)
T ss_pred CCEEEEEEECCCCCEE-EEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCC-CEEEEEECCCCHH------HHHHHHH
T ss_conf 7735589963887678-750445589986663119999999999737655-3068850577457------8999986
No 34
>pfam08973 DUF1893 Domain of unknown function (DUF1893). This domain is found in a set of hypothetical bacterial proteins. The structure of this protein has recently been solved showing it to belong to the cytidine deaminase superfamily. It has also recently been found that this protein is ADP-ribosylated.
Probab=88.01 E-value=0.91 Score=25.48 Aligned_cols=92 Identities=26% Similarity=0.351 Sum_probs=62.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 99999999870882188896479998699899998438876984899999973001069889990573211575210555
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~ 90 (364)
|+.++.+=..+ -..||++++|+| .+ ++++.=.| =+..+++-.+..+|+.++-.. .||. -+-
T Consensus 1 m~~~i~lL~e~--------~~S~Vi~k~~~i-~t-s~~rGv~p--L~~ll~~~~~~l~ga~iaDKV-----VGKa--AA~ 61 (134)
T pfam08973 1 MEEAIKILHEG--------GYSLVIYKDGKI-RT-STQRGVAP--LYDLLTDEPEFLEGALIADKV-----IGKA--AAA 61 (134)
T ss_pred CHHHHHHHHHC--------CEEEEEEECCEE-EE-ECCCCHHH--HHHHHHHCHHHHCCCCHHHHH-----HHHH--HHH
T ss_conf 96799999848--------936999729868-86-45757389--999998598886588446778-----7499--999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 6530134324663010121101243311001898896
Q gi|254780348|r 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 91 ~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
+++..|++.|+-.. .+-...+.|+++||+|+
T Consensus 62 l~vlggv~~VyA~V------ISe~A~~lL~~~gI~~~ 92 (134)
T pfam08973 62 LMVLGGIKEVYADI------ISEPALDLLENAGIEVE 92 (134)
T ss_pred HHHHCCEEEEEHHH------HCHHHHHHHHHCCCEEE
T ss_conf 99947902675325------04899999998595676
No 35
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=85.80 E-value=0.89 Score=25.55 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHCCC-CEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEE-------
Q ss_conf 21013566676420144-0366312201345423544344443442157644668998022100344467079-------
Q gi|254780348|r 175 TGFISKNQVHLLRAQSD-AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI------- 246 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~D-aIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~i------- 246 (364)
+++.+..---.||.+.. -++||+|||+.-.=-.-++.. +-| +|+++.+.-..- +.-++ ..-|++
T Consensus 42 RT~~A~~aI~~l~~~~P~~~~iGAGTVL~~~Q~~~A~~A---GA~---F~vSPG~~p~l~-~~~~~-~~~P~iPGV~tps 113 (205)
T TIGR01182 42 RTPVALEAIRALRKEVPKDALIGAGTVLNPEQLRQAVAA---GAQ---FIVSPGLTPELA-KHAKD-KGIPIIPGVATPS 113 (205)
T ss_pred CCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHC---CCC---EEECCCCCHHHH-HHHHH-CCCCEECCCCCHH
T ss_conf 472168999999972823348716764898999999970---895---787697888999-99850-8881217776878
Q ss_pred --------------EECCC--CCCCHHHHCCC--CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHH-HHHCCC
Q ss_conf --------------85465--54210110022--322222333222788999986079969998123899999-997889
Q gi|254780348|r 247 --------------IVTEN--DDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS-FINSRL 307 (364)
Q Consensus 247 --------------i~~~~--~~~~~~~~~~~--~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~s-fl~~~L 307 (364)
+|=.+ --....+.+.. .+|+++..++.++..+-++|+ .-+|+|=||+-|... +++++-
T Consensus 114 Ei~~Al~~G~~~lKlFPAe~~GG~~~lkAL~GPf~~v~F~PTGGi~l~N~~~YLa---~p~v~c~GGSWl~P~~~~~~g~ 190 (205)
T TIGR01182 114 EIMLALELGITALKLFPAEVVGGVKMLKALAGPFPQVRFCPTGGINLDNARDYLA---LPNVACVGGSWLVPKDLIAAGD 190 (205)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHC---CCCEEEEECCCCCCHHHHHCCC
T ss_conf 9999987577465212562353089999731657898451479998878999971---8937998163146478875899
Q ss_pred CCEE
Q ss_conf 8899
Q gi|254780348|r 308 VDSI 311 (364)
Q Consensus 308 vDEl 311 (364)
+|++
T Consensus 191 wd~i 194 (205)
T TIGR01182 191 WDEI 194 (205)
T ss_pred HHHH
T ss_conf 6799
No 36
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.21 E-value=0.74 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+..-...+|.++.-+++|++||+.
T Consensus 49 rt~~a~~~I~~l~~~~p~~~vGaGTVl~ 76 (212)
T PRK06015 49 RTPAALDAIRAVAAEVEEAIVGAGTILN 76 (212)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9951999999999869996795421156
No 37
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=85.12 E-value=1.6 Score=23.76 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=55.4
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC-
Q ss_conf 0110102787720211365322221013566676420144036631220134542354434444344215764466899-
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL- 230 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i- 230 (364)
+.+=|-.++++-|+..+.- -|---+ ...+.|.- .....|++|.+|..+=+-.|+-| .-||+++.+..
T Consensus 2 ikLIWCqd~n~GI~knN~i-PW~i~E-~LnHF~~t-T~N~tIVMGynTF~al~~~L~n~---------~niV~Sk~~q~e 69 (505)
T PRK00478 2 IKLIWCEDLNFGIAKNNQI-PWKIDE-ELNHFHQT-TTNHTIVMGYNTFQAMNKILANQ---------ANIVISKKHQRE 69 (505)
T ss_pred CEEEEEECCCCCCCCCCCC-CCEEHH-HHHHHHHC-CCCCEEEEECHHHHHHHHHHCCC---------CEEEEEHHHHHH
T ss_conf 3489971476671558838-840078-88888753-55764887122699998761467---------618975665653
Q ss_pred -CHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf -8022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r 231 -SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364)
Q Consensus 231 -~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364)
+.+. .+ .| ..|++.+|.. .....++|=||++++..|++. .|
T Consensus 70 L~~n~---------~l--------------------~V----fnd~qqlL~d---~~n~DlfIIGGK~l~~~Fin~--aD 111 (505)
T PRK00478 70 LKNNN---------EL--------------------FV----FNDLKKLLID---FSNVDLFIIGGKKTIEQFIKY--AD 111 (505)
T ss_pred CCCCC---------CE--------------------EE----HHHHHHHHHH---HCCCCEEEECCHHHHHHHHHH--HH
T ss_conf 56787---------46--------------------86----2569999987---203707998578899999985--02
Q ss_pred EEEEEEECE
Q ss_conf 999996074
Q gi|254780348|r 310 SIILYRSQI 318 (364)
Q Consensus 310 El~ifiaP~ 318 (364)
.+++-.-|-
T Consensus 112 ~LIVS~Ln~ 120 (505)
T PRK00478 112 QLIISKLNA 120 (505)
T ss_pred EEEEEECCC
T ss_conf 014420464
No 38
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=80.69 E-value=4.8 Score=20.64 Aligned_cols=86 Identities=22% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC---C-CCHHHHHHHHHHCCH-HCC-CEEE
Q ss_conf 968778999999999999870882188896479998-69989999843887---6-984899999973001-069-8899
Q gi|254780348|r 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---G-CPHAEVQALEEAGEE-ARG-ATAY 73 (364)
Q Consensus 1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~---G-~~HAE~~al~~~~~~-~~~-atly 73 (364)
|+++.. .+..++.+|......-.-|=.|||++. +||+|+ +|.+-.. | +-|||..||-+|=.. .+. ..++
T Consensus 1 ~~m~~~---~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~ 76 (134)
T COG0295 1 KNMDGL---ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISEGKRKFDAVV 76 (134)
T ss_pred CCCCHH---HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 997789---9999999998724486457827799992799799-988660254552163899999999973997179999
Q ss_pred EE------CCCCCCCCCCCHHHHHHHHCC
Q ss_conf 90------573211575210555653013
Q gi|254780348|r 74 VT------LEPCSHYGRSPPCAQFIIECG 96 (364)
Q Consensus 74 vt------LEPC~h~GktppC~~~ii~~g 96 (364)
|. .-||-| |-+.|-+..
T Consensus 77 v~~~~~~~~sPCG~------CRQ~i~Ef~ 99 (134)
T COG0295 77 VVADTGKPVSPCGA------CRQVLAEFC 99 (134)
T ss_pred EECCCCCCCCCCHH------HHHHHHHHC
T ss_conf 97489997598588------999999866
No 39
>KOG3191 consensus
Probab=80.36 E-value=0.96 Score=25.35 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 9848999999730010698899905732115752105556-530134324663010121101243311001898896222
Q gi|254780348|r 52 CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF-IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 (364)
Q Consensus 52 ~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~~-ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~ 130 (364)
..-+=.+||+.+....++-..-..||=.|-.| |+.. +.+.-...+++-+.|-||...--..+..+.+++....+.
T Consensus 24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSG----vvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~ 99 (209)
T KOG3191 24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSG----VVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVR 99 (209)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 05389999999999986148605899348846----59999997417771699954998999887999985577520565
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
Q ss_conf 101232001222201134222011010278772021136532222101356667642014403
Q gi|254780348|r 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 (364)
Q Consensus 131 ~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaI 193 (364)
.+-...+.+.=---...+.|||-. -|+-|...+-.+.|-.|..-|.-..+|-.+.+-|
T Consensus 100 tdl~~~l~~~~VDvLvfNPPYVpt-----~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~i 157 (209)
T KOG3191 100 TDLLSGLRNESVDVLVFNPPYVPT-----SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDI 157 (209)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCC-----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 257766332773089978996769-----8544206778888745754178999887640444
No 40
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.51 E-value=2.5 Score=22.55 Aligned_cols=158 Identities=15% Similarity=0.131 Sum_probs=78.4
Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 31100189889622210123200122220113422201101027877202113653222210135666764201440366
Q gi|254780348|r 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 (364)
Q Consensus 116 i~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlv 195 (364)
++.|++.|-+|..++.+.+..+..+|-.. ..|+ +....+-|+ .-.-|-.++.... .....|+++|
T Consensus 26 ir~L~~~GA~V~~ImS~~a~~~~Trfg~~----~~~~--~~le~iTg~-------~vi~ti~~aE~ig--p~~~~D~lvI 90 (195)
T PRK08305 26 IEKLVAEGAEVRPIVSYTVQTTDTRFGEG----EEWI--KKIEEITGF-------KVINSIVEAEPLG--PKKPLDCMVI 90 (195)
T ss_pred HHHHHHCCCEEEEEECHHHHHCCCCCCCH----HHHH--HHHHHHHCC-------CCEEECCCCEECC--CCCCCCEEEE
T ss_conf 99999879969999754477505667527----8899--999998599-------5200134551336--6763368999
Q ss_pred E---HHHH------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH-HCCCCCCCEEEE-ECCCCCCCHHHHCCCCC
Q ss_conf 3---1220------13454235443444434421576446689980221-003444670798-54655421011002232
Q gi|254780348|r 196 G---IGTV------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-IIKTALLAPVII-VTENDDPVLALAFRKKN 264 (364)
Q Consensus 196 G---~~Tv------~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~-l~~~~~~~~~ii-~~~~~~~~~~~~~~~~~ 264 (364)
- +||+ +.|+|-+.+=........|+.+.++.|-.+-.+.+ +-+--..+.+++ -..++++.+...
T Consensus 91 APaTaNtiaKLAnGI~DtpV~maaka~Lrn~kPVvia~stNd~l~~n~~Ni~~Ll~~kniyfvPfgqd~~~~Kp~----- 165 (195)
T PRK08305 91 APCTGNTMAKLANGITDSPVLMAAKATLRNQKPVVLAISTNDALGLNAVNLGRLLNTKNIYFVPFGQDDPEKKPN----- 165 (195)
T ss_pred ECCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCH-----
T ss_conf 007541899986535587799999998627998899983686787689999999826978999568867344704-----
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 222233322278899998607996999812
Q gi|254780348|r 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 (364)
Q Consensus 265 v~vi~~~~~dl~~iL~~L~~~gi~~iLVEG 294 (364)
..+..-..=+..+...|..+.+|-||+|-
T Consensus 166 -slva~~~~l~~t~~~Al~g~qlqpv~~~~ 194 (195)
T PRK08305 166 -SLVARMDLLIPTIEEALQGKQLQPVLVEY 194 (195)
T ss_pred -HHHHCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf -56505987799999996499766077743
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=79.35 E-value=3.3 Score=21.72 Aligned_cols=202 Identities=18% Similarity=0.190 Sum_probs=95.4
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCEEE--ECCCCHHHHHHHHHHHHCCC
Q ss_conf 9905732115752105556530134324663010121101243311---001898896--22210123200122220113
Q gi|254780348|r 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW---LSQKGIIVD--RMMESEGKIFLHAYLTRQVE 147 (364)
Q Consensus 73 yvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~---L~~~GI~V~--~~~~~~~~~ln~~f~~~~~~ 147 (364)
-|||-|- ...|-++ +.+-.-.+-|+.-...+| .||||.. |+.-|+++. |.+-....++....+....-
T Consensus 4 TvTLNPa--iD~~~~l-~~l~~g~vNr~~~~~~~a----GGKGINVa~vL~~lG~~~~a~GflGg~tg~~~~~~l~~~gi 76 (310)
T COG1105 4 TVTLNPA--LDYTVFL-DELELGEVNRVRAVTKTA----GGKGINVARVLKDLGIPVTALGFLGGFTGEFFVALLKDEGI 76 (310)
T ss_pred EEECCHH--HHHEEEC-CCCCCCCEEEECCCEECC----CCCCEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9825766--7405444-640025323202330347----88735599999972997169996688657899999876389
Q ss_pred CCCHHHHHHCCCH--------HHHCCCCCCCCCCCCCHHHHHHHHHHH---HCCCCEEEEHHHHCCCCCCCCCC----CC
Q ss_conf 4222011010278--------772021136532222101356667642---01440366312201345423544----34
Q gi|254780348|r 148 KRSHITLKIAVSQ--------DNMIGMAGCGSVPITGFISKNQVHLLR---AQSDAILVGIGTVLADDPELTCR----LN 212 (364)
Q Consensus 148 ~rP~V~lK~A~Sl--------DGkIa~~~g~s~wIT~~~sr~~vh~lR---a~~DaIlvG~~Tv~~DnP~Lt~R----~~ 212 (364)
.--||.++-.+-. ||....-++..--||..+-+++..++. ...|. +|=+|.+= |.+..+ +-
T Consensus 77 ~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~-VvlsGSlP---~g~~~d~y~~li 152 (310)
T COG1105 77 PDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDI-VVLSGSLP---PGVPPDAYAELI 152 (310)
T ss_pred CCEEEECCCCCEEEEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCE-EEEECCCC---CCCCHHHHHHHH
T ss_conf 83079905887356999717888468704889988999999999999975664889-99908899---999979999999
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 44434421576446689980221003444670798546554210110022322222333222788999986079969998
Q gi|254780348|r 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 (364)
Q Consensus 213 ~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLV 292 (364)
..-..+-.++|+|.++.. +...-...|++|- .+......+... ++ ....|....-+.|..+|+++|+|
T Consensus 153 ~~~~~~g~~vilD~Sg~~-----L~~~L~~~P~lIK---PN~~EL~~~~g~--~~--~~~~d~~~~a~~l~~~g~~~ViV 220 (310)
T COG1105 153 RILRQQGAKVILDTSGEA-----LLAALEAKPWLIK---PNREELEALFGR--EL--TTLEDVIKAARELLAEGIENVIV 220 (310)
T ss_pred HHHHHCCCEEEEECCHHH-----HHHHHCCCCCEEE---CCHHHHHHHHCC--CC--CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999865983999798599-----9998707993894---588999999689--88--97488999999998779988999
Q ss_pred CCHHH
Q ss_conf 12389
Q gi|254780348|r 293 EGGAA 297 (364)
Q Consensus 293 EGG~~ 297 (364)
-=|+.
T Consensus 221 SlG~~ 225 (310)
T COG1105 221 SLGAD 225 (310)
T ss_pred EECCC
T ss_conf 75676
No 42
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.60 E-value=4 Score=21.17 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHH--------CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 964799986998999984388769848999999730010--------698899905732115752105556530134324
Q gi|254780348|r 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 (364)
Q Consensus 29 P~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~--------~~atlyvtLEPC~h~GktppC~~~ii~~gIk~V 100 (364)
|.|-|||.=. ...|+.--=.+-++.++.++ -+.|-|+-=||-+| ++-++==||+
T Consensus 111 ~~vk~viLiS---------ptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p~~---------alTkavKkri 172 (431)
T COG4408 111 PQVKSVILIS---------PTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQPNR---------ALTKAVKKRI 172 (431)
T ss_pred CCCCEEEEEC---------CCCCCCHHHHHHHHHHCCCCEEEEEEHHCCCCEEECCCCCCH---------HHHHHHHHHE
T ss_conf 1554799962---------445633799998766089806997501115413442558525---------8899876726
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 66301012110124331100189889622
Q gi|254780348|r 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 (364)
Q Consensus 101 vi~~~DPnp~v~gkGi~~L~~~GI~V~~~ 129 (364)
++|+..+|...+-+--+.|.+.||+|+.+
T Consensus 173 Ylgs~~~ns~~~e~l~~v~aq~~I~v~~~ 201 (431)
T COG4408 173 YLGSQHGNSGSAEMLTAVLAQHGIDVEPC 201 (431)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCEEEC
T ss_conf 60367899718899999998659725873
No 43
>pfam08210 APOBEC_N APOBEC-like N-terminal domain. A mechanism of generating protein diversity is mRNA editing. Members of this family are C-to-U editing enzymes. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination.APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerization and this complex interacts with RNA binding proteins to from the editosome (and references therein).
Probab=78.59 E-value=3.8 Score=21.33 Aligned_cols=63 Identities=37% Similarity=0.532 Sum_probs=41.9
Q ss_pred CCCCEEEEEEE--CC---EEEEEEECCCCC---CCHHHHHHHHHHCC-H---H---CCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 88964799986--99---899998438876---98489999997300-1---0---698899905732115752105556
Q gi|254780348|r 27 TNPSVACLIVK--DG---IVIGRGVTAYGG---CPHAEVQALEEAGE-E---A---RGATAYVTLEPCSHYGRSPPCAQF 91 (364)
Q Consensus 27 pNP~Vg~viv~--~g---~ii~~g~~~~~G---~~HAE~~al~~~~~-~---~---~~atlyvtLEPC~h~GktppC~~~ 91 (364)
.|=.-=|-.|+ +| -.+..|+-+..+ .-|||+.=|..... + + -.-|.|||=-||. .|+++
T Consensus 21 R~ktyLCY~Vk~~~~~~~~~~~~G~l~n~~~~~~~HaE~~Fl~~~~~~~~~~~~~~y~VTwy~SWSPC~------~Ca~~ 94 (116)
T pfam08210 21 RNKTYLCYEVKRKNGGSPVSLDRGILRNEVANTGCHAELCFLEWFGSLRLLPADQRYSVTWYVSWSPCA------NCAQK 94 (116)
T ss_pred CCCEEEEEEEECCCCCCCCCEECCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCHH------HHHHH
T ss_conf 984699999973789987621002674677887752899999997443468977769999996538769------99999
Q ss_pred HHHC
Q ss_conf 5301
Q gi|254780348|r 92 IIEC 95 (364)
Q Consensus 92 ii~~ 95 (364)
|.+.
T Consensus 95 v~~f 98 (116)
T pfam08210 95 VAEF 98 (116)
T ss_pred HHHH
T ss_conf 9999
No 44
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.45 E-value=2.2 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+.+-...+|.++.-+++|++||+.
T Consensus 49 ~tp~a~~~I~~l~~~~p~~~vGaGTV~~ 76 (212)
T PRK05718 49 RTPAALEAIRAIRKEVPEALIGAGTVLN 76 (212)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 8961999999999758981796533134
No 45
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=77.07 E-value=1 Score=25.11 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCC
Q ss_conf 2101356667642014403663122013454235443
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~ 211 (364)
||-.++.++..|+..+||+|||..-.+.+||..++|.
T Consensus 218 SGI~~~~dv~~l~~~~~~~LvGe~lmr~~d~~~~~r~ 254 (459)
T PRK09427 218 SGIYTHAQVRELSPFVNGFLIGSSLMAEDDLDLAVRK 254 (459)
T ss_pred CCCCCHHHHHHHHHHCCEEEECHHHHCCCCHHHHHHH
T ss_conf 7999999999998439999978587579998999999
No 46
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=73.42 E-value=4.4 Score=20.85 Aligned_cols=73 Identities=19% Similarity=0.128 Sum_probs=40.5
Q ss_pred HHHHHCCHHCCC-EEEEECCCCC-----------CCCCCCHHHHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCCCC
Q ss_conf 999730010698-8999057321-----------1575210555653013432466301---012110124331100189
Q gi|254780348|r 59 ALEEAGEEARGA-TAYVTLEPCS-----------HYGRSPPCAQFIIECGIRRVVVCVD---DPDVRVSGRGLQWLSQKG 123 (364)
Q Consensus 59 al~~~~~~~~~a-tlyvtLEPC~-----------h~GktppC~~~ii~~gIk~Vvi~~~---DPnp~v~gkGi~~L~~~G 123 (364)
.++...+-.+.| -.+++||=.. ++.-.|-+.+++.++|+.-|-.|.- |--+.---.-++.|+++|
T Consensus 26 ~~~~v~~~l~~aD~~i~NlE~~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~G~~~T~~~L~~~g 105 (237)
T pfam09587 26 PFADVKPLLRAADLAIGNLETPITDSGEPYSGKPAFRAPPENAEALKAAGFDVVSLANNHSLDYGEEGLLDTLDALDRAG 105 (237)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 89999999861998699811365488987899815779999999999849999995776433257799999999999879
Q ss_pred CEEEECCC
Q ss_conf 88962221
Q gi|254780348|r 124 IIVDRMME 131 (364)
Q Consensus 124 I~V~~~~~ 131 (364)
|...|.-.
T Consensus 106 i~~~G~g~ 113 (237)
T pfam09587 106 IAHAGAGR 113 (237)
T ss_pred CCCCCCCC
T ss_conf 96058889
No 47
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=73.39 E-value=3.6 Score=21.47 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=56.2
Q ss_pred HHHHHHCCCCEEEEECCCCC----CCCCCCCCCCCCCCCCEEEE----CC--CCH-------HHHHHHHHHHHCCCCCCH
Q ss_conf 55653013432466301012----11012433110018988962----22--101-------232001222201134222
Q gi|254780348|r 89 AQFIIECGIRRVVVCVDDPD----VRVSGRGLQWLSQKGIIVDR----MM--ESE-------GKIFLHAYLTRQVEKRSH 151 (364)
Q Consensus 89 ~~~ii~~gIk~Vvi~~~DPn----p~v~gkGi~~L~~~GI~V~~----~~--~~~-------~~~ln~~f~~~~~~~rP~ 151 (364)
+..+..++-+.++..+-+++ |.+- +-++.|++.|+.|-+ .+ .++ -.++. .+..+....+||
T Consensus 107 t~~~la~~~pv~iaPAMn~~M~~np~tq-~Ni~~L~~~G~~vi~P~~G~LAcgd~G~Grl~ep~~I~-~~i~~~l~~~~l 184 (392)
T PRK05579 107 TTTLLATDAPVLVAPAMNTQMWENPATQ-RNLATLRSRGVLVIGPASGRLACGDVGKGRMAEPEEIV-AAAERLLGPKDL 184 (392)
T ss_pred HHHHHHCCCCEEEEECCCHHHHHCHHHH-HHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCCC
T ss_conf 8888853995799837698888697999-99999973698881896675246332356899999999-999985067776
Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHH----HHH-HHHCCCCEEEEHHHHCC
Q ss_conf 0110102787720211365322221013566----676-42014403663122013
Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQ----VHL-LRAQSDAILVGIGTVLA 202 (364)
Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~----vh~-lRa~~DaIlvG~~Tv~~ 202 (364)
--.|+-+|.-+-.-.-+- -+.|||..|=+. ... ++.-++..+|.+.|-..
T Consensus 185 ~gkkvLITaG~T~E~IDp-VR~IsN~SSGkmG~aiA~~a~~~GA~VtlI~g~~~~~ 239 (392)
T PRK05579 185 AGKRVLITAGPTREPIDP-VRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP 239 (392)
T ss_pred CCCEEEEECCCCEEEECC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 788799974772477676-2476657865899999999996799799996478778
No 48
>PRK08904 consensus
Probab=73.27 E-value=3 Score=22.00 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+..-...++.++.-+++|++||+.
T Consensus 44 rtp~a~~~i~~l~~~~p~~~vGaGTVl~ 71 (207)
T PRK08904 44 RTPVGLDAIRLIAKEVPNAIVGAGTVTN 71 (207)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9913999999999868987685531368
No 49
>TIGR01355 cyt_deam_dimer cytidine deaminase; InterPro: IPR006263 Cytidine deaminase is a homodimeric zinc metalloprotein found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals, IPR006262 from INTERPRO. Both types may act on deoxycytidine as well as cytidine. ; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=71.82 E-value=8.2 Score=19.06 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC-CCCC-----HHHHHHHHHH---CCHHCCCEEEEE---
Q ss_conf 9999999999870882188896479998-6998999984388-7698-----4899999973---001069889990---
Q gi|254780348|r 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY-GGCP-----HAEVQALEEA---GEEARGATAYVT--- 75 (364)
Q Consensus 9 ~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~-~G~~-----HAE~~al~~~---~~~~~~atlyvt--- 75 (364)
+.+++|..+|+-..=+- .||||-. ..|++ =-|.-.. .|-+ |||+-++.++ +|+- =..|-|+
T Consensus 27 ~Li~~A~sya~apiS~f----~VgAvgrGsSGR~-YLGvNvEF~gl~l~~sIHAEQfli~hl~Ln~Er~-l~~lavs~ng 100 (311)
T TIGR01355 27 KLIPKAASYARAPISKF----NVGAVGRGSSGRF-YLGVNVEFPGLPLHHSIHAEQFLISHLALNNERG-LNDLAVSSNG 100 (311)
T ss_pred HHHHHHHHHHCCCCCCC----CEEEEEEECCCCE-EEEECEECCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEEEECC
T ss_conf 75377756631676434----3278998314764-2000110478587863761489999999707985-0046785157
Q ss_pred -----CCCCCCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC------CCCCCCCCCCCCCEEEECCCCH---HHHHHHH
Q ss_conf -----57321157521055565301-3432466301012110------1243311001898896222101---2320012
Q gi|254780348|r 76 -----LEPCSHYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRV------SGRGLQWLSQKGIIVDRMMESE---GKIFLHA 140 (364)
Q Consensus 76 -----LEPC~h~GktppC~~~ii~~-gIk~Vvi~~~DPnp~v------~gkGi~~L~~~GI~V~~~~~~~---~~~ln~~ 140 (364)
-.||-| |.+.+-+- +-.++=|=..||+-.- ...|..-|+. .|.++ -.++.-.
T Consensus 101 dc~~F~~PCgh------CrQFl~E~~~A~~ikIll~~~~~~~dSdsaadsdGF~~L~~-------yLP~~yFgp~dl~~~ 167 (311)
T TIGR01355 101 DCSVFAAPCGH------CRQFLNEIRNASSIKILLPDPHNKEDSDSAADSDGFLSLQS-------YLPDRYFGPDDLLIK 167 (311)
T ss_pred CEEECCCCCCC------HHHHHHHHCCHHHHHCCCCCHHHCCCCCHHHCCCCCCCHHH-------HCCCCCCCCCCCCHH
T ss_conf 65344887851------77899860583142010687222046610110235544266-------385104783002312
Q ss_pred HHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC--CCCCHH---HHHHHHHHHHC
Q ss_conf 22201134222011010278772021136532--222101---35666764201
Q gi|254780348|r 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--PITGFI---SKNQVHLLRAQ 189 (364)
Q Consensus 141 f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~--wIT~~~---sr~~vh~lRa~ 189 (364)
||.. -=+++.-|+.++..+-.|- -|+++. +.-.-+-|||.
T Consensus 168 yf~~---------~LL~e~~~n~l~l~d~ds~~~~~~s~~dlC~~L~~~AL~AA 212 (311)
T TIGR01355 168 YFSA---------PLLLEERDNCLALSDEDSIADGIDSESDLCSHLKQQALKAA 212 (311)
T ss_pred HCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 3044---------46760027831005776445677760667789999999996
No 50
>PRK08782 consensus
Probab=68.38 E-value=4.1 Score=21.09 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+......+|.++.-+++|++||+.
T Consensus 51 rt~~a~~~i~~l~~~~p~~~vGaGTV~~ 78 (219)
T PRK08782 51 RTPVAIEALAMLKRELPNIVIGAGTVLS 78 (219)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 9933999999999868994799997058
No 51
>PRK08104 consensus
Probab=68.07 E-value=5 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+..-...++.++.-+++|++||+.
T Consensus 49 rt~~a~~~I~~l~~~~p~~~vGaGTV~~ 76 (212)
T PRK08104 49 RTPCALEAIRAIAKEVPEAIVGAGTVLN 76 (212)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8814999999999868985685420267
No 52
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=67.64 E-value=7.2 Score=19.42 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+..-...+|.++.-+++|++||+.
T Consensus 42 ~t~~a~~~I~~l~~~~p~~~iGaGTV~~ 69 (196)
T pfam01081 42 RTPCALDAIRLLRKNRPDALVGAGTVLN 69 (196)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9827999999999649996799983768
No 53
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.77 E-value=10 Score=18.37 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 21013566676420144036631220134542354434444344215764466899802210034446707985465542
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~ 254 (364)
+++.+......+|.++.-+++|++||+.-.- ++. ...-=..+++++..+. .+.+......+.++-.-..+
T Consensus 47 ~t~~a~~~I~~l~~~~p~~~iGaGTV~~~e~---~~~---a~~aGA~FiVSP~~~~----~vi~~a~~~~i~~iPGv~Tp 116 (210)
T PRK07455 47 NSDQPAELISQLREKLPECIIGTGTLLTLED---LEE---AIAAGAQFCFTPHVDL----ELIQAAVAADIPIIPGALTP 116 (210)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCHHH---HHH---HHHCCCCEEECCCCCH----HHHHHHHHCCCCEECCCCCH
T ss_conf 9988999999999878996898881878999---999---9986999998688889----99999998299765886999
Q ss_pred CHHHHCCCCCCCCC---CCCCCCHHHHHHHHHH-CCCCEEEECCH--HHHHHHHHHCCC
Q ss_conf 10110022322222---3332227889999860-79969998123--899999997889
Q gi|254780348|r 255 VLALAFRKKNINII---YCDCRDLKKLLTILVG-RGVTSLLVEGG--AAVAHSFINSRL 307 (364)
Q Consensus 255 ~~~~~~~~~~v~vi---~~~~~dl~~iL~~L~~-~gi~~iLVEGG--~~l~~sfl~~~L 307 (364)
.........|.+++ ..+...=...++.|.. ..--+++--|| ..-+..||++|.
T Consensus 117 sEi~~A~~~G~~~vKlFPA~~~GG~~ylkal~~p~p~i~~~ptGGV~~~n~~~yl~ag~ 175 (210)
T PRK07455 117 TEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAGA 175 (210)
T ss_pred HHHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCC
T ss_conf 99999998699847750513206799999986548999388789989888999996899
No 54
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=65.96 E-value=7.2 Score=19.44 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+.+..+.+|.++.-+++|++||+.
T Consensus 38 ~t~~a~~~i~~l~~~~~~~~iGaGTV~~ 65 (190)
T cd00452 38 RTPGALEAIRALRKEFPEALIGAGTVLT 65 (190)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 8802999999999868980896523477
No 55
>pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.68 E-value=4.5 Score=20.79 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred CEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCH--------HCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEE
Q ss_conf 6479998699899998438876984899999973001--------06988999057321157521055565301343246
Q gi|254780348|r 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 (364)
Q Consensus 30 ~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~--------~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vv 101 (364)
.|.|+|.=.- -.|+.+-=.+.|++++.. .-|+|-|+-=|||.| .|.++==||++
T Consensus 110 ~vk~iILvSP---------t~GS~~lv~~~l~~~~~~~eVISfStY~gdTr~~d~~~~~~---------vlTtavKkkiY 171 (429)
T pfam10100 110 RVKCVILISP---------TFGSNLLVQNFLNALNKDAEVISFSTYYGDTRWIDDEQPNR---------VLTTAVKKKLY 171 (429)
T ss_pred CCCEEEEECC---------CCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCCH---------HHHHHHHCEEE
T ss_conf 4777999766---------64407999999985599816998530036431006788735---------78876422078
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEE---CCCCHHHH
Q ss_conf 630101211012433110018988962---22101232
Q gi|254780348|r 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR---MMESEGKI 136 (364)
Q Consensus 102 i~~~DPnp~v~gkGi~~L~~~GI~V~~---~~~~~~~~ 136 (364)
+|+.+.+..---+=.+.+++.||++.. .++.|.++
T Consensus 172 lgSt~~~S~~~~~l~~~~~~~~I~~~~~~~pL~AE~rN 209 (429)
T pfam10100 172 LGSTHSGSAELSRLCAVFAQLGIELTPMESPLAAETRN 209 (429)
T ss_pred ECCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHCC
T ss_conf 54799996789999999987593069817877775426
No 56
>PRK06857 consensus
Probab=65.52 E-value=6.5 Score=19.73 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf 2101356667642014403663122013
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364)
+++.+..-...+|.++.-+++|++||+.
T Consensus 46 rt~~a~~~I~~l~~~~p~~~vGaGTV~~ 73 (209)
T PRK06857 46 RSAAAAEAIRLLREAYPDMLIGAGTVLT 73 (209)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 9932999999999758994899993767
No 57
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=63.69 E-value=8.8 Score=18.82 Aligned_cols=75 Identities=19% Similarity=0.076 Sum_probs=42.7
Q ss_pred HHHHHCCHHCCCE-EEEECCCCCC-------------CCCCCHHHHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCC
Q ss_conf 9997300106988-9990573211-------------575210555653013432466301---0121101243311001
Q gi|254780348|r 59 ALEEAGEEARGAT-AYVTLEPCSH-------------YGRSPPCAQFIIECGIRRVVVCVD---DPDVRVSGRGLQWLSQ 121 (364)
Q Consensus 59 al~~~~~~~~~at-lyvtLEPC~h-------------~GktppC~~~ii~~gIk~Vvi~~~---DPnp~v~gkGi~~L~~ 121 (364)
.++...+-.+.+. .+++||=+.. +--.|-.++++.++|+.-|-.|-- |--..=--.-++.|++
T Consensus 22 ~~~~v~~~~~~aD~~~~NlE~~i~~~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~~slANNH~~D~G~~Gl~~Ti~~L~~ 101 (239)
T smart00854 22 PFAGVKPLLRAADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDA 101 (239)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89999999974999999640266289987877766120299999999998299989931763431208999999999998
Q ss_pred CCCEEEECCCCH
Q ss_conf 898896222101
Q gi|254780348|r 122 KGIIVDRMMESE 133 (364)
Q Consensus 122 ~GI~V~~~~~~~ 133 (364)
+||...|.-.++
T Consensus 102 ~gi~~~G~g~~~ 113 (239)
T smart00854 102 AGIAHVGAGRNL 113 (239)
T ss_pred CCCCCCCCCCCH
T ss_conf 699615898995
No 58
>TIGR01354 cyt_deam_tetra cytidine deaminase; InterPro: IPR006262 Cytidine deaminase is a small homotetrameric zinc metalloprotein. It is found in humans and most bacteria. A related homodimeric form, IPR006263 from INTERPRO, with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.; GO: 0004126 cytidine deaminase activity, 0046087 cytidine metabolic process.
Probab=61.57 E-value=13 Score=17.73 Aligned_cols=90 Identities=23% Similarity=0.268 Sum_probs=57.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC---C-CCHHHHHHHHHHCCH----HC----CCEEEEE--
Q ss_conf 99999999870882188896479998-69989999843887---6-984899999973001----06----9889990--
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---G-CPHAEVQALEEAGEE----AR----GATAYVT-- 75 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~---G-~~HAE~~al~~~~~~----~~----~atlyvt-- 75 (364)
+..+++.|.+.-..-+-|=+|||.++ +||+++ .|.--.. | +-+||..||-++--. -+ --.++|+
T Consensus 3 l~~~a~~a~~~aY~PYS~F~VGAa~~t~dg~~f-~G~NvENASY~~~~CAEr~Ai~~~~~~yP~GG~r~G~f~~~~~~~~ 81 (135)
T TIGR01354 3 LFKAAQEALKKAYAPYSNFKVGAALLTKDGRVF-TGVNVENASYGLTICAERSAIGKAISAYPAGGRRDGKFVAIAVAAS 81 (135)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
T ss_conf 888999999852787668811699985699889-8763421367670468999999998608878753551279998626
Q ss_pred -----CCCCCCCCCCCHHHHHHHHCCC-CEEEEECCCC
Q ss_conf -----5732115752105556530134-3246630101
Q gi|254780348|r 76 -----LEPCSHYGRSPPCAQFIIECGI-RRVVVCVDDP 107 (364)
Q Consensus 76 -----LEPC~h~GktppC~~~ii~~gI-k~Vvi~~~DP 107 (364)
.-|| +-|-+-|.+..- +..=|=+.|.
T Consensus 82 ~~~D~~~PC------G~CRQvl~EF~~h~d~~i~~~~~ 113 (135)
T TIGR01354 82 ANDDSVSPC------GACRQVLAEFAKHPDTKIIMTNN 113 (135)
T ss_pred CCCCCCCCC------CHHHHHHHHHCCCCCCEEEEECC
T ss_conf 988832676------03577788750899833898679
No 59
>PTZ00333 triosephosphate isomerase; Provisional
Probab=59.59 E-value=10 Score=18.34 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 2322222333222788999986079969998123899999997
Q gi|254780348|r 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364)
Q Consensus 262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364)
..++.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus 204 ~~~i~ILYGGSVn~~Na~~i~~~~~vDG~LV-GgASL~~~F~~ 245 (252)
T PTZ00333 204 AKKVRIIYGGSVNEKNCHELIKQPDIDGFLV-GGASLKPEFVD 245 (252)
T ss_pred HCCCCEEEECCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHH
T ss_conf 0677488727779999999966889997896-00537978999
No 60
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=58.51 E-value=4.3 Score=20.95 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCC
Q ss_conf 2101356667642014403663122013454235
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt 208 (364)
||-.+..++..+|+.+||+|||..=.+.+||.-.
T Consensus 209 SGI~~~~di~~l~~~~da~LIGeslMk~~d~~~a 242 (247)
T PRK13957 209 SGIESRSDLDKFRKLVDAALIGTYFMEKKDIRKA 242 (247)
T ss_pred CCCCCHHHHHHHHHHCCEEEECHHHHCCCCHHHH
T ss_conf 8999999999999739999988677569999999
No 61
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=58.00 E-value=6.6 Score=19.68 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHCCCCEEEEECCCCCCCC----CC---------CCCCCCCCCCCEEE--E-CCCCHHHHHHHHHHHHCCC
Q ss_conf 5210555653013432466301012110----12---------43311001898896--2-2210123200122220113
Q gi|254780348|r 84 RSPPCAQFIIECGIRRVVVCVDDPDVRV----SG---------RGLQWLSQKGIIVD--R-MMESEGKIFLHAYLTRQVE 147 (364)
Q Consensus 84 ktppC~~~ii~~gIk~Vvi~~~DPnp~v----~g---------kGi~~L~~~GI~V~--~-~~~~~~~~ln~~f~~~~~~ 147 (364)
-|+-=++.+.++|+.+|.|+..+++|.+ .| +||+.|+++||.|. - +......++-.-+-.....
T Consensus 103 it~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~r~N~~~l~~i~~la~~l 182 (375)
T PRK05301 103 LTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVEL 182 (375)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 57999999985099889995677987787776378862999999999999749816999872305688899999999972
Q ss_pred CCCHH
Q ss_conf 42220
Q gi|254780348|r 148 KRSHI 152 (364)
Q Consensus 148 ~rP~V 152 (364)
+-+++
T Consensus 183 Gv~~~ 187 (375)
T PRK05301 183 GADRL 187 (375)
T ss_pred CCCEE
T ss_conf 99828
No 62
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=57.84 E-value=4.4 Score=20.87 Aligned_cols=91 Identities=21% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH-HHHHCCCCEE
Q ss_conf 311001898896222101232001222201134222011010278772021136532222101356667-6420144036
Q gi|254780348|r 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH-LLRAQSDAIL 194 (364)
Q Consensus 116 i~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh-~lRa~~DaIl 194 (364)
+..|+++|.+|+.++.+.+..+-.........++|..+-. | .| +.....-| .|+.++|+++
T Consensus 22 ir~L~k~g~~V~vi~T~~A~~fv~~~~~~~ls~~~v~~d~-----~----------~~---~~~~~~~HI~L~~waDl~l 83 (180)
T PRK07313 22 TSQLTKIGYDVTVIMTKAATQFITPLTLQVLSKNPVHLDV-----M----------DE---EDPKSMNHIELAKNTDLFL 83 (180)
T ss_pred HHHHHHCCCEEEEEECCCHHHHCCHHHHHHHCCCEEECCC-----C----------CC---CCCCCCCCEEECCCCCEEE
T ss_conf 9999988995999977469976698789887299288378-----8----------65---4678766121232038889
Q ss_pred EEH---HHH------CCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 631---220------1345423544344443442157644
Q gi|254780348|r 195 VGI---GTV------LADDPELTCRLNGLQEHSPMRIILD 225 (364)
Q Consensus 195 vG~---~Tv------~~DnP~Lt~R~~~~~~~~P~riVld 225 (364)
|-- ||+ +.||...++=+ ......|+.+.-.
T Consensus 84 IaPaTANtiaK~A~GiaDnllt~~~l-A~~~~~Pv~iaPA 122 (180)
T PRK07313 84 VAPATANTIAKLAHGIADNLVTSVAL-ALPATTPKLIAPA 122 (180)
T ss_pred EECCCHHHHHHHHHCCCCCHHHHHHH-HHCCCCCEEEECC
T ss_conf 81086869999984124729999999-7268998899517
No 63
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=55.06 E-value=9.6 Score=18.58 Aligned_cols=60 Identities=18% Similarity=0.260 Sum_probs=36.0
Q ss_pred EEEEEEECCEEEEEEECCCCCCCHHHHHHH----HHHC-CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 479998699899998438876984899999----9730-0106988999057321157521055565301343246630
Q gi|254780348|r 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQAL----EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~~~~~G~~HAE~~al----~~~~-~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~ 104 (364)
||||+|.||+||.. ||..- .||-++.+. .-.. ...+.| |=.| -|+..|.+.==--|+||+
T Consensus 23 iGiV~v~DgeIv~~-f~T~V-NP~~~~pp~I~eLTGisd~~l~~A-------P~F~-----qVA~~i~~~l~D~iFVAH 87 (944)
T TIGR01407 23 IGIVLVEDGEIVDT-FATDV-NPNEPIPPFIQELTGISDEQLKQA-------PYFS-----QVAQEIYDLLEDGIFVAH 87 (944)
T ss_pred EEEEEEECCCEEEE-CCCCC-CCCCCCCCHHHHHCCCCHHHHCCC-------CCHH-----HHHHHHHHHHCCCEEEEE
T ss_conf 98899855814320-12677-889877611454228776864048-------8887-----999999987429727761
No 64
>TIGR01523 ATPase-IID_K-Na potassium/sodium efflux P-type ATPase, fungal-type; InterPro: IPR006414 Initially described as a calcium efflux ATPase , more recent work has shown that the Schizosaccharomyces pombe CTA3 gene is in fact a potassium ion efflux pump . These sequences form the clade which represents the fungal P-type ATPases which are responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID . ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006812 cation transport, 0016021 integral to membrane.
Probab=54.86 E-value=5.4 Score=20.26 Aligned_cols=101 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred EEECCCCCCCCCCCC-CCCCCCCCCEEEEC---CCCHHHH------HHHH-HHHHCCCCCCHHHHHHCCCHHHHCCCCCC
Q ss_conf 663010121101243-31100189889622---2101232------0012-22201134222011010278772021136
Q gi|254780348|r 101 VVCVDDPDVRVSGRG-LQWLSQKGIIVDRM---MESEGKI------FLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 (364)
Q Consensus 101 vi~~~DPnp~v~gkG-i~~L~~~GI~V~~~---~~~~~~~------ln~~-f~~~~~~~rP~V~lK~A~SlDGkIa~~~g 169 (364)
.||.+|| ||.-.+| +++..+|||.|+-+ .-+.|+. +... |++..+..--|... ...--|| ..+.
T Consensus 588 L~GIYDP-PR~E~~GAV~~~H~AGI~VHMLTGD~~~TAKAIA~EVGI~P~nl~~~~~~~~~~MVM-TGSQFD~---LS~E 662 (1001)
T TIGR01523 588 LVGIYDP-PRTESKGAVKKFHRAGIRVHMLTGDFVETAKAIAREVGILPTNLISDRDEIVDSMVM-TGSQFDA---LSDE 662 (1001)
T ss_pred EEEECCC-CCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCEEEE-CCCCCCC---CCCC
T ss_conf 6650288-887524489988547966887438965788998742367885001012100000131-2431356---6600
Q ss_pred CCC---CC------CCHHHHHHHH--HHHHCCCCEEEEHHHHCCCCCCCC
Q ss_conf 532---22------2101356667--642014403663122013454235
Q gi|254780348|r 170 GSV---PI------TGFISKNQVH--LLRAQSDAILVGIGTVLADDPELT 208 (364)
Q Consensus 170 ~s~---wI------T~~~sr~~vh--~lRa~~DaIlvG~~Tv~~DnP~Lt 208 (364)
+-. -+ -+|+..-.+= +-|++.=.-|+|=| ..|-|+|.
T Consensus 663 EVD~L~~L~LVIARC~PQTKV~MIEALHRRK~F~~MTGDG--VNDSPSLK 710 (1001)
T TIGR01523 663 EVDDLKVLPLVIARCAPQTKVKMIEALHRRKKFVAMTGDG--VNDSPSLK 710 (1001)
T ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCC--CCCCHHHH
T ss_conf 0014563300243178863267766542023226401787--37873221
No 65
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; InterPro: IPR000667 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family of serine peptidases belong to MEROPS peptidase family S13 (D-Ala-D-Ala carboxypeptidase C, clan SE). The predicted active site residues for members of this family and family S12 occur in the motif SXXK. D-Ala-D-Ala carboxypeptidase C is involved in the metabolism of cell components ; it is synthesised with a leader peptide to target it to the cell membrane . After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor . There are three families of serine-type D-Ala-D-Ala peptidase (designated S11, S12 and S13), which are also known as low molecular weight penicillin-binding proteins . Family S13 comprises D-Ala-D-Ala peptidases that have sufficient sequence similarity around their active sites to assume a distant evolutionary relationship to other clan members; members of the S13 family also bind penicillin and have D-amino-peptidase activity. Proteases of family S11 have exclusive D-Ala-D-Ala peptidase activity, while some members of S12 are C beta-lactamases . ; GO: 0004185 serine carboxypeptidase activity, 0006508 proteolysis.
Probab=54.86 E-value=2.7 Score=22.32 Aligned_cols=140 Identities=15% Similarity=0.107 Sum_probs=69.9
Q ss_pred CCCCCEEE------EEEECCEEEEEEECCCCCCCHHHHH---------HHHHHCCHHCCC--EEEEECCCCCCCCCCCHH
Q ss_conf 88896479------9986998999984388769848999---------999730010698--899905732115752105
Q gi|254780348|r 26 STNPSVAC------LIVKDGIVIGRGVTAYGGCPHAEVQ---------ALEEAGEEARGA--TAYVTLEPCSHYGRSPPC 88 (364)
Q Consensus 26 ~pNP~Vg~------viv~~g~ii~~g~~~~~G~~HAE~~---------al~~~~~~~~~a--tlyvtLEPC~h~GktppC 88 (364)
.=+|||-| .+++.|.++-+=+-...+++-+.+. -+.++.+-+.|+ -.||+||=-.|--++=--
T Consensus 127 ~~~aP~~AltasPnA~~D~n~v~~~l~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~ds~~~~YC~~~~~~~g~n~~~i 206 (427)
T TIGR00666 127 GYAAPIAALTASPNAIIDANCVIVELTPNKKPGELTAISVSPKAPVQTIFSQVKTTAADSEEAPYCQLDVVVGGQNRLTI 206 (427)
T ss_pred CCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCEECCCCCCCCCCCEEEEEECCCEEEEE
T ss_conf 67788566427830101388799998426888860235307578707776342630368887876358888879557999
Q ss_pred HHHH-HHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE-CC-CCHHHHHHHHHHHHCCCCCCHHH--HHHCCCHHHH
Q ss_conf 5565-301343246630101211012433110018988962-22-10123200122220113422201--1010278772
Q gi|254780348|r 89 AQFI-IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MM-ESEGKIFLHAYLTRQVEKRSHIT--LKIAVSQDNM 163 (364)
Q Consensus 89 ~~~i-i~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~-~~-~~~~~~ln~~f~~~~~~~rP~V~--lK~A~SlDGk 163 (364)
+--+ .++.+...-++..||..=..--..+.||+.||+|.+ ++ ..+....-.. =.-...-.|... -+|-..-|..
T Consensus 207 ~G~lP~~~~~~~~~~aV~~~~~YAl~~~~~~Lk~~GI~~~g~~~r~~~~~~~~~~-PLa~~~S~PL~~Ll~~mmk~SdN~ 285 (427)
T TIGR00666 207 TGCLPRAAEPTPLTFAVQDPATYALDILKQKLKQLGITVSGKILRAAQAPEAGQV-PLASHQSAPLIDLLKKMMKKSDNL 285 (427)
T ss_pred EECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-CHHHHCCCCHHHHHHHHHHHCCCH
T ss_conf 7045577766542798418611689999999997189621367743788875656-533214886689999986210633
Q ss_pred CCC
Q ss_conf 021
Q gi|254780348|r 164 IGM 166 (364)
Q Consensus 164 Ia~ 166 (364)
+|.
T Consensus 286 ~Ae 288 (427)
T TIGR00666 286 IAE 288 (427)
T ss_pred HHH
T ss_conf 378
No 66
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=54.79 E-value=17 Score=16.98 Aligned_cols=31 Identities=35% Similarity=0.346 Sum_probs=26.0
Q ss_pred CCCCCCCCEEEEEE-ECCEEEEEEECCCCCCCHHHHH
Q ss_conf 82188896479998-6998999984388769848999
Q gi|254780348|r 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQ 58 (364)
Q Consensus 23 g~t~pNP~Vg~viv-~~g~ii~~g~~~~~G~~HAE~~ 58 (364)
..|-|| +++ ++-++|=+|.|.+.|+-|++.+
T Consensus 12 ~~t~~~-----ili~~~TkViVQGiTG~~g~~h~~~m 43 (309)
T PTZ00187 12 FRTAPR-----VWVNKDTKVICQGITGKQGTFHTEQA 43 (309)
T ss_pred HHCCCC-----EEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 722674-----89869981999768882888999999
No 67
>PRK13907 rnhA ribonuclease H; Provisional
Probab=54.68 E-value=17 Score=16.97 Aligned_cols=45 Identities=20% Similarity=0.079 Sum_probs=24.5
Q ss_pred CCCCCCCCC---EEEEEEECCEEEEEEECCCCCCC-HHHHHHHHHHCCH
Q ss_conf 882188896---47999869989999843887698-4899999973001
Q gi|254780348|r 22 VGLTSTNPS---VACLIVKDGIVIGRGVTAYGGCP-HAEVQALEEAGEE 66 (364)
Q Consensus 22 ~g~t~pNP~---Vg~viv~~g~ii~~g~~~~~G~~-HAE~~al~~~~~~ 66 (364)
.|.+.+||= .|.||..+...+..++.....+. -||..||-.+=+.
T Consensus 7 DGasrgNPG~ag~Gv~i~~~~~~~~~~~~lg~~TNN~AEy~Ali~gL~~ 55 (128)
T PRK13907 7 DGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKY 55 (128)
T ss_pred EECCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 3547999977069999990986799986148755779999999999999
No 68
>pfam02844 GARS_N Phosphoribosylglycinamide synthetase, N domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289).
Probab=54.04 E-value=14 Score=17.58 Aligned_cols=79 Identities=27% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHCCHHCCCEEEEEC--------CCCCCCC--CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 769848999999730010698899905--------7321157--521055565301343246630101211012433110
Q gi|254780348|r 50 GGCPHAEVQALEEAGEEARGATAYVTL--------EPCSHYG--RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 (364)
Q Consensus 50 ~G~~HAE~~al~~~~~~~~~atlyvtL--------EPC~h~G--ktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L 119 (364)
.||.||=..+|.+... ...+|+.- -.|.... .--.-.+...+.+|.=||||-.+| ++.| =.+.|
T Consensus 8 GgREHAi~~~l~~s~~---~~~l~~~pgN~gi~~~~~~~~i~~~d~~~i~~~~~~~~idlviiGPE~p--L~~G-l~D~l 81 (99)
T pfam02844 8 GGREHALAWKLAQSPR---VEKVYVAPGNPGTAQLAKNVNIDITDFEALADFAKEENIDLVVVGPEAP--LVAG-IVDAL 81 (99)
T ss_pred CHHHHHHHHHHHCCCC---CCEEEEECCCCHHHHHCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHHH
T ss_conf 8799999999964999---7769995898157774750145844799999999981974999896067--7878-89999
Q ss_pred CCCCCEEEECCCCHH
Q ss_conf 018988962221012
Q gi|254780348|r 120 SQKGIIVDRMMESEG 134 (364)
Q Consensus 120 ~~~GI~V~~~~~~~~ 134 (364)
+++||.|-|--.+.+
T Consensus 82 ~~~gi~vfGP~k~aA 96 (99)
T pfam02844 82 RAAGIPVFGPSKAAA 96 (99)
T ss_pred HHCCCEEECCCHHHH
T ss_conf 868991799286887
No 69
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=53.76 E-value=17 Score=16.88 Aligned_cols=88 Identities=31% Similarity=0.337 Sum_probs=47.8
Q ss_pred EEE-ECCEEEEEEECCCCCCCHHHHHHHH---------------------------HHCCHHCCCEEEEECCCCCCCCCC
Q ss_conf 998-6998999984388769848999999---------------------------730010698899905732115752
Q gi|254780348|r 34 LIV-KDGIVIGRGVTAYGGCPHAEVQALE---------------------------EAGEEARGATAYVTLEPCSHYGRS 85 (364)
Q Consensus 34 viv-~~g~ii~~g~~~~~G~~HAE~~al~---------------------------~~~~~~~~atlyvtLEPC~h~Gkt 85 (364)
+++ +|-+++-+|+|.+.|+.|+|.+.-- +|-++. ++++-|-.=|-
T Consensus 3 il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~-~a~~svI~Vp~------ 75 (293)
T COG0074 3 ILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKET-GANASVIFVPP------ 75 (293)
T ss_pred EEECCCCEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHH-CCCEEEEECCC------
T ss_conf 46358974898336542003889999972985664236897743883754789999998702-89779996481------
Q ss_pred CHHHHHHH---HCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 10555653---01343246630101211012433110018988962
Q gi|254780348|r 86 PPCAQFII---ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 (364)
Q Consensus 86 ppC~~~ii---~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~ 128 (364)
|-++++++ ++||+-||+=+.---.+=-=+=..++++.|..+-|
T Consensus 76 ~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~iiG 121 (293)
T COG0074 76 PFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRLIG 121 (293)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEC
T ss_conf 7789999999857995799995999888999999999866979987
No 70
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=51.62 E-value=12 Score=17.83 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCEEEEEEECCEEEEEEECCCCC---CC-HHHHHHHHHHCCHH
Q ss_conf 96479998699899998438876---98-48999999730010
Q gi|254780348|r 29 PSVACLIVKDGIVIGRGVTAYGG---CP-HAEVQALEEAGEEA 67 (364)
Q Consensus 29 P~Vg~viv~~g~ii~~g~~~~~G---~~-HAE~~al~~~~~~~ 67 (364)
----|||.+|++||++||..-.- +. .|=..||+.||-+.
T Consensus 154 tttk~v~m~dneiig~gw~~t~~v~~sa~~~~~~al~~ag~~~ 196 (404)
T TIGR03286 154 TTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGVSL 196 (404)
T ss_pred CEEEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 5145899725704405765554678889999999999739757
No 71
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.21 E-value=14 Score=17.41 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 2105556530134324663010121101243311001898896
Q gi|254780348|r 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 85 tppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
-+..++.+.+.|+.-|+.+..=| +..+.|+++||+|-
T Consensus 52 g~~~~~~l~~~gv~~vI~~~iG~------~a~~~L~~~GI~v~ 88 (103)
T cd00851 52 GGKAAEFLADEGVDVVIVGGIGP------RALNKLRNAGIKVY 88 (103)
T ss_pred CCHHHHHHHHCCCCEEEECCCCH------HHHHHHHHCCCEEE
T ss_conf 54089999865998999787598------89999998899999
No 72
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=51.18 E-value=12 Score=17.95 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCEEEEC
Q ss_conf 157521055565301343246630101211-0124331100189889622
Q gi|254780348|r 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRM 129 (364)
Q Consensus 81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp~-v~gkGi~~L~~~GI~V~~~ 129 (364)
|++-+|-=.+.|++.++.-||+|.-...-. +.-.-.+.|+++||+|...
T Consensus 43 ~h~l~~~dl~~ll~~~~evlviGTG~~g~l~v~p~~~~~l~~~gi~v~~~ 92 (117)
T cd05126 43 SHGLQPEELEELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVL 92 (117)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 89889999999997199999985896865648999999999759818983
No 73
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=50.63 E-value=14 Score=17.54 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=6.1
Q ss_pred HHHHHHCCCCEEEEECC
Q ss_conf 55653013432466301
Q gi|254780348|r 89 AQFIIECGIRRVVVCVD 105 (364)
Q Consensus 89 ~~~ii~~gIk~Vvi~~~ 105 (364)
++.+++.|+.=|+++..
T Consensus 58 a~~l~~~gvdvvi~~~i 74 (121)
T COG1433 58 AELLVDEGVDVVIASNI 74 (121)
T ss_pred HHHHHHCCCCEEEECCC
T ss_conf 99999769989997766
No 74
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=49.90 E-value=9.9 Score=18.49 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC----CCCC----C-----CHHHHHHHHCCCCEEEEECCCCCCCCCCCC
Q ss_conf 87698489999997300106988999057321----1575----2-----105556530134324663010121101243
Q gi|254780348|r 49 YGGCPHAEVQALEEAGEEARGATAYVTLEPCS----HYGR----S-----PPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 (364)
Q Consensus 49 ~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~----h~Gk----t-----ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkG 115 (364)
..|+.||=..+|.+.+. .+||---|-+ ..+. . .-=++...+.+|.=||||-.+| ++.| =
T Consensus 10 sGGREHAla~kl~~s~~-----~~~~~~g~gn~g~~~~~~~~~~~~~~d~~~i~~~a~~~~idLvvvGPE~p--L~~G-i 81 (435)
T PRK06395 10 SGGREDAIARAIKRSGA-----ILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPV--LATP-L 81 (435)
T ss_pred CCHHHHHHHHHHHCCCC-----CEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHCC-H
T ss_conf 78899999999855988-----44999899967877623234656856999999999984999999897678--8661-4
Q ss_pred CCCCCCCCCEEEECCC
Q ss_conf 3110018988962221
Q gi|254780348|r 116 LQWLSQKGIIVDRMME 131 (364)
Q Consensus 116 i~~L~~~GI~V~~~~~ 131 (364)
.+.|+++||.|-|--.
T Consensus 82 ~D~l~~~gi~vFGP~k 97 (435)
T PRK06395 82 VNNLLKRGIKVASPTM 97 (435)
T ss_pred HHHHHHCCCCEECCHH
T ss_conf 5599768994668428
No 75
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=49.56 E-value=8 Score=19.11 Aligned_cols=94 Identities=23% Similarity=0.236 Sum_probs=51.5
Q ss_pred CCCCCCCCCEE--EECCCCHHH-HHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC---CCCCHHHHHHHHHHH-H
Q ss_conf 31100189889--622210123-2001222201134222011010278772021136532---222101356667642-0
Q gi|254780348|r 116 LQWLSQKGIIV--DRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVHLLR-A 188 (364)
Q Consensus 116 i~~L~~~GI~V--~~~~~~~~~-~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~---wIT~~~sr~~vh~lR-a 188 (364)
++.-++-|.++ +.--++|.. .+..+=-.-=.++|-.-|+++-.+.=.+++..--... --||-.+..++..++ +
T Consensus 153 ~~~a~~LGm~~LVEVH~~~El~rAl~~ga~iIGINnRnL~Tf~vD~~~~~~Lap~iP~~~v~VAESGI~~~~Dv~~~a~a 232 (695)
T PRK13802 153 LDLAHELNMTVLVETHTREEIERARKAGAKVIGINARNLKNLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARA 232 (695)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCEECHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 99999869917999789999999984799989987898864228779999998468998579956899998999999977
Q ss_pred CCCCEEEEHHHHCCCCCCCCC
Q ss_conf 144036631220134542354
Q gi|254780348|r 189 QSDAILVGIGTVLADDPELTC 209 (364)
Q Consensus 189 ~~DaIlvG~~Tv~~DnP~Lt~ 209 (364)
-+||||||-.-+..+||+..+
T Consensus 233 GadAvLVGEalvta~dP~~~v 253 (695)
T PRK13802 233 GADAVLVGEGVATADNHELAV 253 (695)
T ss_pred CCCEEEECCHHHCCCCHHHHH
T ss_conf 999999780341589879999
No 76
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=49.46 E-value=8.1 Score=19.10 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.9
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9986079969998
Q gi|254780348|r 280 TILVGRGVTSLLV 292 (364)
Q Consensus 280 ~~L~~~gi~~iLV 292 (364)
..+.+.|++.+||
T Consensus 225 ~~l~~~G~~~~LI 237 (254)
T pfam00218 225 EKLAKHGANAFLV 237 (254)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999879999998
No 77
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=49.08 E-value=13 Score=17.60 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHCCHH------------CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 8769848999999730010------------6988999057321157521055565301343246630101211012433
Q gi|254780348|r 49 YGGCPHAEVQALEEAGEEA------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 (364)
Q Consensus 49 ~~G~~HAE~~al~~~~~~~------------~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi 116 (364)
..|+.||=..+|.+.+.-. .-++.++.+.+.++. -=.+...+.+|.=||||-..| +++| =.
T Consensus 8 sGgREHAla~~l~~s~~v~~v~~aPGN~g~~~~a~~~~~i~~~d~~----~i~~~a~~~~iDLvvvGPE~P--L~~G-iv 80 (415)
T PRK13790 8 AGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQ----AILDFAKQQNVDWVVIGPEQP--LIDG-LA 80 (415)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHH----HHHHHHHHCCCCEEEECCCHH--HHHH-HH
T ss_conf 7889999999996298989899978955765223024676855899----999999981999999896078--6634-88
Q ss_pred CCCCCCCCEEEECCCCH-----HHHHHHHHHHHCCCCCC
Q ss_conf 11001898896222101-----23200122220113422
Q gi|254780348|r 117 QWLSQKGIIVDRMMESE-----GKIFLHAYLTRQVEKRS 150 (364)
Q Consensus 117 ~~L~~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP 150 (364)
+.|+++||.|-|--.+. ++.+-+.|+. +++-|
T Consensus 81 D~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~--~~~IP 117 (415)
T PRK13790 81 DILRANGFKVFGPNKQAAQIEGSKLFAKKIME--KYNIP 117 (415)
T ss_pred HHHHCCCCEEECCCHHHHHHHCCHHHHHHHHH--HCCCC
T ss_conf 88643897598949799515126999999999--82979
No 78
>KOG3363 consensus
Probab=47.49 E-value=5.9 Score=20.02 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=3.4
Q ss_pred HHHHHHCCCC
Q ss_conf 9998607996
Q gi|254780348|r 279 LTILVGRGVT 288 (364)
Q Consensus 279 L~~L~~~gi~ 288 (364)
.+.+.+.+|+
T Consensus 133 ~~F~k~~ki~ 142 (196)
T KOG3363 133 RQFVKSHKIK 142 (196)
T ss_pred HHHHHHHCCC
T ss_conf 9999983766
No 79
>pfam06754 PhnG Phosphonate metabolism protein PhnG. This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase.
Probab=47.06 E-value=20 Score=16.47 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=21.7
Q ss_pred EEEEE-CCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99986-99899998438876984899999973
Q gi|254780348|r 33 CLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63 (364)
Q Consensus 33 ~viv~-~g~ii~~g~~~~~G~~HAE~~al~~~ 63 (364)
|++-- +|. +|.||+...-..|||.-|+-+|
T Consensus 68 c~VrL~~G~-~G~~yv~GRdk~~AelaA~~DA 98 (147)
T pfam06754 68 AAVRLASGT-VGHSYVLGRDKRHAELAALIDA 98 (147)
T ss_pred EEEEECCCC-EEEEEEECCCHHHHHHHHHHHH
T ss_conf 999948997-5688763589999999999999
No 80
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=46.87 E-value=16 Score=17.09 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=7.3
Q ss_pred HCCCCEEEEHHH
Q ss_conf 014403663122
Q gi|254780348|r 188 AQSDAILVGIGT 199 (364)
Q Consensus 188 a~~DaIlvG~~T 199 (364)
.-+|+|++|.=|
T Consensus 85 ~Ga~GvV~G~L~ 96 (248)
T PRK11572 85 LGFPGLVTGVLD 96 (248)
T ss_pred CCCCEEEEEEEC
T ss_conf 699967996688
No 81
>KOG0237 consensus
Probab=46.68 E-value=18 Score=16.77 Aligned_cols=89 Identities=26% Similarity=0.298 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHCCHHCCCEEEE------------------ECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 7698489999997300106988999------------------0573211575210555653013432466301012110
Q gi|254780348|r 50 GGCPHAEVQALEEAGEEARGATAYV------------------TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 (364)
Q Consensus 50 ~G~~HAE~~al~~~~~~~~~atlyv------------------tLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v 111 (364)
.|+.||=.-.|.+...- ...|| ++-+|.| -.-++.-.+..|.-||+|-.+| +|
T Consensus 11 GgREHal~wkL~qSp~v---~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~----~ala~f~~e~~I~lVvvGPE~P--L~ 81 (788)
T KOG0237 11 GGREHALAWKLKQSPKV---KKVYVAPGNGGTASGDASKVPNLDISVADF----EALASFCKEHNINLVVVGPELP--LV 81 (788)
T ss_pred CCHHHHHHHHHHCCCCC---CEEEECCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCEEEEEECCCHH--HH
T ss_conf 84276888876328755---538983698874567512375565576559----9999999874621899787326--54
Q ss_pred CCCCCCCCCCCCCEEEECCCC-----HHHHHHHHHHHHCCCCCC
Q ss_conf 124331100189889622210-----123200122220113422
Q gi|254780348|r 112 SGRGLQWLSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRS 150 (364)
Q Consensus 112 ~gkGi~~L~~~GI~V~~~~~~-----~~~~ln~~f~~~~~~~rP 150 (364)
+|= ...|+++||.+.|-..+ ..+.+-+.|+++ ++.|
T Consensus 82 ~Gl-~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r--~~IP 122 (788)
T KOG0237 82 AGL-ADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHR--HNIP 122 (788)
T ss_pred HHH-HHHHHCCCCCEECCHHHHHHHHHHHHHHHHHHHH--CCCC
T ss_conf 235-6666405851017437777766417889988986--3998
No 82
>pfam02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain. This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 utilizes acyl-CoA and acetate to form acetyl-CoA.
Probab=45.95 E-value=20 Score=16.49 Aligned_cols=122 Identities=16% Similarity=0.202 Sum_probs=65.8
Q ss_pred EEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCE--EEEECCCCCCCCCCCHHHHHHHHCC-C-CEEEEECCCCC
Q ss_conf 999869989999843887698489999997300106988--9990573211575210555653013-4-32466301012
Q gi|254780348|r 33 CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT--AYVTLEPCSHYGRSPPCAQFIIECG-I-RRVVVCVDDPD 108 (364)
Q Consensus 33 ~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~at--lyvtLEPC~h~GktppC~~~ii~~g-I-k~Vvi~~~DPn 108 (364)
+-++++|..|+.|-....|.|-|...||.+..+..++.. ..++|+++.... .+|+.+....+. + .| .+
T Consensus 16 ~~~IksGd~V~~~gf~~ag~p~~~~~ALa~r~~e~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~r-------~~ 87 (198)
T pfam02550 16 ASLVEIGMHIERGGFTFAGTAKAIPKYLAKRKVELVNAKVKTFIDLAVGAFLS-AGPEAEVTDWKDAFLYR-------PA 87 (198)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-CCCCHHHHHHHHCCHHC-------CC
T ss_conf 97389979998658767778788999999989987555655157678634414-68620466576341110-------16
Q ss_pred CCCCCCCCCCCCCCCC-EEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCC
Q ss_conf 1101243311001898-896-222101232001222201134222011010278772021
Q gi|254780348|r 109 VRVSGRGLQWLSQKGI-IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166 (364)
Q Consensus 109 p~v~gkGi~~L~~~GI-~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~ 166 (364)
|--.|....++-++|. +-. ..+.+-...+.++|+- -.-- ++--..+.-||++..
T Consensus 88 ~~f~~~~~Rk~in~G~~~y~p~~ls~vp~~~~~g~~~---iDva-ii~vSp~D~~G~~sl 143 (198)
T pfam02550 88 PKQSGELGRKAINQGLASFVDKHLSEVPQLFEYGFVP---IDVA-LIETTAMDDHGYFNF 143 (198)
T ss_pred CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC---CCEE-EEEEECCCCCEEEEE
T ss_conf 3005843788986799520263587739999769988---8789-999415899815974
No 83
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.64 E-value=12 Score=17.86 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|.++|.+=+==.+ +...|...-|+|++.+=+
T Consensus 232 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnT 279 (323)
T PRK02458 232 KTFAEAAKILERSGATEIYAVASHGLFAGGAAEVLETAPIKEILVTDS 279 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEECCC
T ss_conf 889999999996499768999976425707999986499868998589
No 84
>PRK01999 consensus
Probab=44.37 E-value=12 Score=17.94 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 2788999986079969998123899----999997889889999960
Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 274 dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
.+...-+.|.++|..+|.+=+==.+ +..-|...-+||++.+=+
T Consensus 227 Tl~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TdT 273 (311)
T PRK01999 227 TITKAADLMMEKGAKSVRAIASHAVMSGPASERVENSKLTEMIFTDS 273 (311)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 89999999985599738999945545855999997489988998378
No 85
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.89 E-value=11 Score=18.30 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=4.9
Q ss_pred HHHCCCCEEEE
Q ss_conf 86079969998
Q gi|254780348|r 282 LVGRGVTSLLV 292 (364)
Q Consensus 282 L~~~gi~~iLV 292 (364)
+.+.|++.+||
T Consensus 229 l~~~G~davLI 239 (261)
T PRK00278 229 LAKAGADAFLV 239 (261)
T ss_pred HHHCCCCEEEE
T ss_conf 99779999998
No 86
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=43.13 E-value=8 Score=19.11 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=21.2
Q ss_pred EEECCCCCCCC-CCCCCCCCCCCCCEEE
Q ss_conf 66301012110-1243311001898896
Q gi|254780348|r 101 VVCVDDPDVRV-SGRGLQWLSQKGIIVD 127 (364)
Q Consensus 101 vi~~~DPnp~v-~gkGi~~L~~~GI~V~ 127 (364)
++|+.|| ||- --..|+.=|+|||.|-
T Consensus 460 ~vGl~DP-PR~EV~~ai~~CR~AGIrVI 486 (800)
T TIGR01116 460 VVGLLDP-PRPEVADAIEKCREAGIRVI 486 (800)
T ss_pred EEECCCC-CCHHHHHHHHHHHHCCCEEE
T ss_conf 8506894-81689999998873797899
No 87
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.97 E-value=12 Score=17.82 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|..+|.+=+==.+ +-.-|...-+||++.+=+
T Consensus 231 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnT 278 (319)
T PRK04923 231 GTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQLDELVVTDT 278 (319)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECC
T ss_conf 129999999987599868999979768867999997089988998289
No 88
>PRK05259 consensus
Probab=42.24 E-value=14 Score=17.40 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 2278899998607996999812------3899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+=+ |+.+ ..|...-+||++.+=+
T Consensus 223 gTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~--~ri~~s~i~~vvvTdT 270 (310)
T PRK05259 223 GTLCNAAEALLANGANSVTAYITHGVLSGGAV--ARIASSKLKELVITDS 270 (310)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHH--HHHHCCCCCEEEEECC
T ss_conf 89999999998779986999997853685699--9986289978999389
No 89
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=42.01 E-value=19 Score=16.65 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=51.2
Q ss_pred ECCCCCCCH----HHHHHHHHH-CCHHC-CCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---C---
Q ss_conf 438876984----899999973-00106-98899905732115752105556530134324663010121101---2---
Q gi|254780348|r 46 VTAYGGCPH----AEVQALEEA-GEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS---G--- 113 (364)
Q Consensus 46 ~~~~~G~~H----AE~~al~~~-~~~~~-~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~---g--- 113 (364)
.+-..|+|- .+...|-++ .+... ....=+|+| |+-..-|..-.+++.+.||.|+-+|..+-|+.|- |
T Consensus 113 vy~GGGTPs~L~~~~l~~l~~~i~~~f~l~~d~EiTiE-~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h 191 (447)
T PRK09058 113 VYFGGGTPTALSADDLARLIEALREYLPLAPDCEITLE-GRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKD 191 (447)
T ss_pred EEEECCHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCC
T ss_conf 99808634748999999999999976899888469883-38787999999999964998057725448888998647999
Q ss_pred ------CCCCCCCCCCCE
Q ss_conf ------433110018988
Q gi|254780348|r 114 ------RGLQWLSQKGII 125 (364)
Q Consensus 114 ------kGi~~L~~~GI~ 125 (364)
+.++.|+++|+.
T Consensus 192 ~~~~~~~~l~~l~~~g~~ 209 (447)
T PRK09058 192 DREEVLAFLEELVARDRA 209 (447)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 999999999999974996
No 90
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.79 E-value=13 Score=17.62 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|..+|.+=+==.+ +...|.+.-+||++.+=+
T Consensus 222 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnT 269 (309)
T PRK01259 222 GTLCKAAEALKERGAKSVFAYATHPVLSGGAAERIANSVLDELVVTDS 269 (309)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECHHCCHHHHHHHHHCCCCEEEEECC
T ss_conf 659999999975699669999876313945999987089988998189
No 91
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=41.43 E-value=11 Score=18.15 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=52.1
Q ss_pred ECCCCCCC----HHHHHHHHHH-CCHHC-CCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC---C---
Q ss_conf 43887698----4899999973-00106-98899905732115752105556530134324663010121101---2---
Q gi|254780348|r 46 VTAYGGCP----HAEVQALEEA-GEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS---G--- 113 (364)
Q Consensus 46 ~~~~~G~~----HAE~~al~~~-~~~~~-~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~---g--- 113 (364)
.|-..|+| .++...|-++ .+... ....=+|+| |+=..-|+.-.+++.+.||.|+-+|..|-|+.|- |
T Consensus 108 i~~GGGTPs~L~~~~l~~l~~~l~~~f~~~~~~EitiE-~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h 186 (456)
T PRK09249 108 LHWGGGTPTFLSPEQLTRLMALLREHFNFAPDAEISIE-IDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQ 186 (456)
T ss_pred EEECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEE-ECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCC
T ss_conf 99789670649999999999999986688988359998-43475879999999845975688605357879999852889
Q ss_pred ------CCCCCCCCCCCE
Q ss_conf ------433110018988
Q gi|254780348|r 114 ------RGLQWLSQKGII 125 (364)
Q Consensus 114 ------kGi~~L~~~GI~ 125 (364)
+.++.+|++|++
T Consensus 187 ~~~~~~~~i~~ar~~Gf~ 204 (456)
T PRK09249 187 PFELTFALVEAARELGFT 204 (456)
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 999999999999981997
No 92
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=41.13 E-value=17 Score=16.91 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHCCC-CEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCC
Q ss_conf 221013566676420144-0366312201345423544344443442157644668998022100344467079854655
Q gi|254780348|r 174 ITGFISKNQVHLLRAQSD-AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 (364)
Q Consensus 174 IT~~~sr~~vh~lRa~~D-aIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~ 252 (364)
.+++.+......||.++. .++||++||+.-. .+|.. -..=..+++++..+- .+.+......+.++-.-.
T Consensus 43 l~tp~a~~~I~~l~~~~~~~~~iGAGTVlt~e---~~~~a---i~aGA~FiVSP~~~~----~vi~~a~~~~i~~iPG~~ 112 (206)
T PRK09140 43 LNSPDPFDSIAALVKALGDDALIGAGTVLSPE---QVDRL---ADAGGRLIVTPNIDP----EVIRRAVAYGMTVMPGVA 112 (206)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEECCCHH---HHHHH---HHCCCCEEECCCCCH----HHHHHHHHCCCCCCCCCC
T ss_conf 79976999999999967986599862046799---99999---985999999999989----999999982996527859
Q ss_pred CCCHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH-C-CCCEEEECCH--HHHHHHHHHCCCC
Q ss_conf 421011002232222---23332227889999860-7-9969998123--8999999978898
Q gi|254780348|r 253 DPVLALAFRKKNINI---IYCDCRDLKKLLTILVG-R-GVTSLLVEGG--AAVAHSFINSRLV 308 (364)
Q Consensus 253 ~~~~~~~~~~~~v~v---i~~~~~dl~~iL~~L~~-~-gi~~iLVEGG--~~l~~sfl~~~Lv 308 (364)
.+.........|.++ +..+...+ ..++.|.. . +--+++=-|| ..-+..||++|.+
T Consensus 113 TPsEi~~A~~~Ga~~vKlFPA~~~Gp-~~ikal~~p~P~~~~~~ptGGV~~~N~~~~l~aGa~ 174 (206)
T PRK09140 113 TPTEAFAALRAGADALKLFPASQLGP-AGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAA 174 (206)
T ss_pred CHHHHHHHHHCCCCEEEECCHHCCCH-HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99999999985987156575110599-999998643899998995379888889999986991
No 93
>KOG1100 consensus
Probab=40.81 E-value=15 Score=17.31 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHC--CHHCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 9848999999730--01069889990573211575210555
Q gi|254780348|r 52 CPHAEVQALEEAG--EEARGATAYVTLEPCSHYGRSPPCAQ 90 (364)
Q Consensus 52 ~~HAE~~al~~~~--~~~~~atlyvtLEPC~h~GktppC~~ 90 (364)
..+.|+..+...+ ..-.-.+.=|.|.||.|.=-.++|.+
T Consensus 147 ~~~~~~~~~~~~~~Cr~C~~~~~~VlllPCrHl~lC~~C~~ 187 (207)
T KOG1100 147 YVDPSVDNFKRMRSCRKCGEREATVLLLPCRHLCLCGICDE 187 (207)
T ss_pred CCCHHHHHHHCCCCCEECCCCCCEEEEECCCCEEECCCCCC
T ss_conf 35255665333564610276773588642662675445245
No 94
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=40.06 E-value=14 Score=17.52 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=10.2
Q ss_pred HHHHHHHHHHC-CCCEEEEHHHHCCCCC
Q ss_conf 35666764201-4403663122013454
Q gi|254780348|r 179 SKNQVHLLRAQ-SDAILVGIGTVLADDP 205 (364)
Q Consensus 179 sr~~vh~lRa~-~DaIlvG~~Tv~~DnP 205 (364)
+..++..++.. +||+|||..=...+||
T Consensus 183 ~~~di~~l~~~G~d~~LIG~sLm~~~~p 210 (217)
T cd00331 183 TPEDVKRLAEAGADAVLIGESLMRAPDP 210 (217)
T ss_pred CHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 9999999998799999989788679998
No 95
>KOG2737 consensus
Probab=39.37 E-value=25 Score=15.78 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=35.9
Q ss_pred EEEEECCEEEEEEECCCCCCCHHHHHHHHHH-------CCH-----------HCCCEEEEECCCCCC---CCCCCHHHHH
Q ss_conf 9998699899998438876984899999973-------001-----------069889990573211---5752105556
Q gi|254780348|r 33 CLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-------GEE-----------ARGATAYVTLEPCSH---YGRSPPCAQF 91 (364)
Q Consensus 33 ~viv~~g~ii~~g~~~~~G~~HAE~~al~~~-------~~~-----------~~~atlyvtLEPC~h---~GktppC~~~ 91 (364)
-|+...|+- ..++-+.|++. +++- |.+ .-.+||||-==|=++ .|+--+--+.
T Consensus 44 ~vllqgGeE-----~nrYctD~~~l--FrQesYF~~lfGV~ep~~yg~idv~tgKstLFvPrlp~~ya~W~G~i~~l~~f 116 (492)
T KOG2737 44 FVLLQGGEE-----KNRYCTDTTEL--FRQESYFAYLFGVREPGFYGAIDVGTGKSTLFVPRLPDSYATWMGEILSLQHF 116 (492)
T ss_pred EEEEECCHH-----HCCCCCCHHHH--HHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHCEECCCCCCHHHH
T ss_conf 899965454-----40103532788--75534778864678866047898168945888468972543314652778999
Q ss_pred HHHCCCCEEEEE
Q ss_conf 530134324663
Q gi|254780348|r 92 IIECGIRRVVVC 103 (364)
Q Consensus 92 ii~~gIk~Vvi~ 103 (364)
--+.-|..|++-
T Consensus 117 ke~y~VDev~yv 128 (492)
T KOG2737 117 KEKYAVDEVFYV 128 (492)
T ss_pred HHHHHHHHEEEH
T ss_conf 887511023330
No 96
>pfam07825 Exc Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.
Probab=39.10 E-value=7.7 Score=19.25 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=15.3
Q ss_pred EEEECCCCCCCCCCCHHHHHH
Q ss_conf 999057321157521055565
Q gi|254780348|r 72 AYVTLEPCSHYGRSPPCAQFI 92 (364)
Q Consensus 72 lyvtLEPC~h~GktppC~~~i 92 (364)
+|+|||--++.-.+|||.+-+
T Consensus 1 ~ylTL~eWA~~~~rPPs~~TL 21 (72)
T pfam07825 1 MYLTLQEWNARQRRPRSLETV 21 (72)
T ss_pred CEEEHHHHHHHCCCCCCHHHH
T ss_conf 946399999755389968899
No 97
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=38.67 E-value=14 Score=17.39 Aligned_cols=33 Identities=39% Similarity=0.545 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHC-CCCEEEEHHHHCCCCCCC
Q ss_conf 210135666764201-440366312201345423
Q gi|254780348|r 175 TGFISKNQVHLLRAQ-SDAILVGIGTVLADDPEL 207 (364)
Q Consensus 175 T~~~sr~~vh~lRa~-~DaIlvG~~Tv~~DnP~L 207 (364)
||-.+..++.+++.. +||+|||..=...+||.-
T Consensus 214 SGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 214 SGISTPEDVRRLAKAGADAFLVGEALMRADDPEE 247 (254)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHHCCCCHHH
T ss_conf 7989999999999748998996388856999899
No 98
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=38.51 E-value=29 Score=15.32 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=60.5
Q ss_pred EEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHHHHHH-CCCCEEEEECCCCCCCCCC
Q ss_conf 986998999984388769848999999730010698899905732115752105556530-1343246630101211012
Q gi|254780348|r 35 IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSG 113 (364)
Q Consensus 35 iv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~~ii~-~gIk~Vvi~~~DPnp~v~g 113 (364)
.++||-.|+.|=-...|.|.+=+.||.+.+ .++-|++.. -.|....=...++. --++|++.+..=-+|...
T Consensus 14 ~IkDG~tI~vgGf~~~g~P~~li~al~~~g--~kdLtli~~-----~~~~~~~g~~~l~~~G~v~r~I~~~~g~~p~~~- 85 (220)
T PRK09920 14 FFRDGMTIMVGGFMGIGTPSRLVEALLESG--VRDLTLIAN-----DTAFVDTGIGPLIVNGRVRKVIASHIGTNPETG- 85 (220)
T ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHC--CCCCEEEEC-----CCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHH-
T ss_conf 299979999898577378999999999729--987678724-----789887577888656977578705526898999-
Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCC
Q ss_conf 433110018988962221012320012222011342220110102
Q gi|254780348|r 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 (364)
Q Consensus 114 kGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~ 158 (364)
+...++-|++...-.-- ....+.-...++|.+.-+...
T Consensus 86 ---~~~~~~~ie~~~~pqG~----~~~~~Ra~aaG~pg~~t~~Gl 123 (220)
T PRK09920 86 ---RRMISGEMDVVLVPQGT----LIEQIRCGGAGLGGFLTPTGV 123 (220)
T ss_pred ---HHHHCCCCEEEECCHHH----HHHHHHHHHCCCCCCCCCCCC
T ss_conf ---99875973899988899----999999866899975465554
No 99
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=38.26 E-value=29 Score=15.30 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCCCEEEEEEECCEEEEEEE------CCCCC----CCHHHHHHHHHHCCHH
Q ss_conf 88964799986998999984------38876----9848999999730010
Q gi|254780348|r 27 TNPSVACLIVKDGIVIGRGV------TAYGG----CPHAEVQALEEAGEEA 67 (364)
Q Consensus 27 pNP~Vg~viv~~g~ii~~g~------~~~~G----~~HAE~~al~~~~~~~ 67 (364)
|-..|+|||++||+|+=.=. ....| +...|.-|++...+..
T Consensus 1 p~v~V~~vv~~dg~vLL~rr~~~g~W~lPGG~ve~gEt~~eaa~REv~EET 51 (123)
T cd04672 1 PKVDVRAAIFKDGKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEET 51 (123)
T ss_pred CCCEEEEEEEECCEEEEEEECCCCEEECCCEECCCCCCHHHHHHHHHHHHH
T ss_conf 932099999989999999988999398984663799899999999999977
No 100
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=38.02 E-value=16 Score=17.00 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=10.7
Q ss_pred HHHHHHHCCCCEEEEECCCCC
Q ss_conf 555653013432466301012
Q gi|254780348|r 88 CAQFIIECGIRRVVVCVDDPD 108 (364)
Q Consensus 88 C~~~ii~~gIk~Vvi~~~DPn 108 (364)
+++.+ .+|+.||+.= |+.
T Consensus 110 vA~ll-~~~~d~vitv--DlH 127 (301)
T PRK07199 110 FARLL-SGSFDRLITV--DPH 127 (301)
T ss_pred HHHHH-HHHCCEEEEE--CCC
T ss_conf 99999-8527768997--045
No 101
>PRK04554 consensus
Probab=37.97 E-value=18 Score=16.71 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHH----HHHHHCCCCCEEEEEEE
Q ss_conf 227889999860799699981238999----99997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAVA----HSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~----~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+-+=-.++ ..-|...-+||++.+=+
T Consensus 229 gTl~~aa~~Lk~~GA~~V~~~aTHglfs~~A~~rl~~s~i~~ivvTnT 276 (327)
T PRK04554 229 NTLCKAAVALKERGAERVLAYASHAVFSGEAVSRIASSEIDQVVVTDT 276 (327)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 679999999997699878999879160633999997189978999189
No 102
>PRK11539 hypothetical protein; Provisional
Probab=37.96 E-value=18 Score=16.71 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=8.1
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 8899998607996
Q gi|254780348|r 276 KKLLTILVGRGVT 288 (364)
Q Consensus 276 ~~iL~~L~~~gi~ 288 (364)
+++++.+.++|+.
T Consensus 698 ~eVl~R~~~~g~~ 710 (754)
T PRK11539 698 VKVKHRYQQQGYQ 710 (754)
T ss_pred HHHHHHHHHCCCE
T ss_conf 8999999987994
No 103
>pfam06545 DUF1116 Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.
Probab=37.62 E-value=10 Score=18.33 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=16.5
Q ss_pred EECCCCCCCCCCCHHHHHHHHC
Q ss_conf 9057321157521055565301
Q gi|254780348|r 74 VTLEPCSHYGRSPPCAQFIIEC 95 (364)
Q Consensus 74 vtLEPC~h~GktppC~~~ii~~ 95 (364)
|+|+||-|++--+|=+--+.-+
T Consensus 1 I~~~Pch~~~aVgPMagV~S~s 22 (216)
T pfam06545 1 IRLEPCHHHGAVGPMAGVTSPS 22 (216)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9201654368724562104798
No 104
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=37.58 E-value=30 Score=15.23 Aligned_cols=45 Identities=13% Similarity=0.334 Sum_probs=29.8
Q ss_pred HHCCCCCCCEEEEEC-CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Q ss_conf 100344467079854-65542101100223222223332227889999860799699981
Q gi|254780348|r 235 KIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 (364)
Q Consensus 235 ~l~~~~~~~~~ii~~-~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVE 293 (364)
++.+.....-+|+++ .+++..+. ...|+.||+.|.++|+.-|-|+
T Consensus 150 ~V~~~~~~GdIiL~HDASd~~KqT--------------~~ALp~Ii~~LK~~GY~fv~is 195 (198)
T TIGR02764 150 RVVKNTKPGDIILLHDASDSAKQT--------------VKALPEIIKKLKEKGYEFVTIS 195 (198)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCH--------------HHHHHHHHHHHHHCCCEEEEHH
T ss_conf 133127998569876348797441--------------7789999899875495343422
No 105
>TIGR01755 flav_wrbA flavoprotein WrbA; InterPro: IPR010089 This entry represents a protein, WrbA, related to and slightly larger than flavodoxin. In Escherichia coli, this protein is produced during stationary phase, binds to the trp repressor, and makes trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Three copies are found in Sinorhizobium meliloti, and members are found in species in which homologs of the Escherichia coli trp operon repressor TrpR (P03032 from SWISSPROT) are not detected.; GO: 0010181 FMN binding, 0016481 negative regulation of transcription.
Probab=37.57 E-value=13 Score=17.78 Aligned_cols=32 Identities=38% Similarity=0.433 Sum_probs=23.5
Q ss_pred HHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 20144036631220134542354434444344215764466899
Q gi|254780348|r 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230 (364)
Q Consensus 187 Ra~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i 230 (364)
=|.+|||++|+.| |.-.. .-| +|-+||..+=|
T Consensus 74 LA~yDAiI~Gt~T----------RyG~m-asQ-Mr~fLDqtGGL 105 (205)
T TIGR01755 74 LADYDAIIFGTPT----------RYGNM-ASQ-MRNFLDQTGGL 105 (205)
T ss_pred HCCCCEEEECCCC----------CCCCC-HHH-HHHHHHCCCCC
T ss_conf 0057637772887----------33450-468-88874105770
No 106
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=37.50 E-value=19 Score=16.55 Aligned_cols=45 Identities=31% Similarity=0.536 Sum_probs=24.2
Q ss_pred CHHHHHHHHHH-HHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 10135666764-20144036631220134542354434444344215764
Q gi|254780348|r 176 GFISKNQVHLL-RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224 (364)
Q Consensus 176 ~~~sr~~vh~l-Ra~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVl 224 (364)
|--|+..+.+| -.-.+.+++|+--+. ||.+- | .-...+.|.+|++
T Consensus 81 GIRs~e~v~~ll~~Gv~RVI~GT~A~~--~~~~v-~-~~~~~~g~~~i~V 126 (241)
T TIGR00007 81 GIRSLEDVEKLLDLGVDRVIIGTAAVE--NPDLV-K-ELLKEYGPERIVV 126 (241)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEEEEEC--CHHHH-H-HHHHHHCCCCEEE
T ss_conf 516889999999739857997332210--86999-9-9999848996599
No 107
>PRK02039 consensus
Probab=37.44 E-value=19 Score=16.60 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 2278899998607996999812------3899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+=+ |+. -.-|...-+||++++=+
T Consensus 228 gTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A--~~rl~~s~i~~vvvTnT 275 (316)
T PRK02039 228 GTLCKAAQVLKERGAKQVFAYATHPVLSGGA--AERIAASALDELVVTDT 275 (316)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHH--HHHHHCCCCCEEEEECC
T ss_conf 8899999999976998579999784257349--99986089978999389
No 108
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.40 E-value=17 Score=16.93 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 2278899998607996999812------3899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|..+|.+=+ |+ -...+.+++ +|+++.+=+
T Consensus 215 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~-A~~rl~~s~-i~~iv~TnT 262 (304)
T PRK03092 215 GTIAGAVEALKEAGAKDVIIAATHGVLSDP-AAERLKNCG-AREVVVTNT 262 (304)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHCC-CCEEEEECC
T ss_conf 359999999986699839999979345967-999997389-987998188
No 109
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=37.12 E-value=31 Score=15.18 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCC--CHHHHHHHHHHCCCCEEEECCH--HHHHHHHHHCCCCCEEEEEEE
Q ss_conf 232222233322--2788999986079969998123--899999997889889999960
Q gi|254780348|r 262 KKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG--AAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 262 ~~~v~vi~~~~~--dl~~iL~~L~~~gi~~iLVEGG--~~l~~sfl~~~LvDEl~ifia 316 (364)
.....++.++-. -+..+++.+.+.++.+|.+-.| -.++..++..+-+|+++++-.
T Consensus 76 ~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~FP 134 (229)
T PRK00121 76 NPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLNFP 134 (229)
T ss_pred CCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECCC
T ss_conf 88886899996169999999999982998389883478999997146454140467179
No 110
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=36.47 E-value=24 Score=15.96 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHCCCCEEEECCH-----HHHHHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123-----899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGG-----AAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG-----~~l~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+-+= +.-...+.+++++||++++=+
T Consensus 244 gTl~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~~rl~~s~ii~~vvvTdT 292 (331)
T PRK02812 244 GTICEGARLLRKEGAKRVYACATHAVFSPPAIERLSASGLFEEVIVTNT 292 (331)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999999999857998789999896558779999972897677998089
No 111
>PRK01506 consensus
Probab=36.23 E-value=19 Score=16.55 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|.++|.+=+==.+ +-.-|...-+||++.+=+
T Consensus 231 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~iv~TnT 278 (317)
T PRK01506 231 GTITLAANALVENGASEVYACCTHPVLSGPAIERIQNSKIKELVVTNS 278 (317)
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEECC
T ss_conf 059999999986599758999977006817999986189988999388
No 112
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=35.99 E-value=29 Score=15.30 Aligned_cols=42 Identities=33% Similarity=0.316 Sum_probs=25.7
Q ss_pred CCCC--CEEEEEEECCEEEEEEEC---------CCCC----CCHHHHHHHHHHCCHH
Q ss_conf 8889--647999869989999843---------8876----9848999999730010
Q gi|254780348|r 26 STNP--SVACLIVKDGIVIGRGVT---------AYGG----CPHAEVQALEEAGEEA 67 (364)
Q Consensus 26 ~pNP--~Vg~viv~~g~ii~~g~~---------~~~G----~~HAE~~al~~~~~~~ 67 (364)
++|| .|||||.++|+|+=.=.. ...| +-.+|..|++.+.+..
T Consensus 9 y~nP~~~v~~ii~~~~kILLvrR~~~P~~g~W~lPGG~vE~gEt~eea~~REv~EEt 65 (130)
T cd04511 9 YQNPKIIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEA 65 (130)
T ss_pred CCCCCEEEEEEEEECCEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 599978999999869999999406899999586897486589899999998998740
No 113
>PRK04117 consensus
Probab=35.62 E-value=20 Score=16.43 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|..+|.+=+==.+ +..-|...-++|++.+=+
T Consensus 225 gTi~~aa~~L~~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnT 272 (309)
T PRK04117 225 GTIVKAAEALKEKGATSVMACCTHAVLSGPAYERIAKGALDELVVTNT 272 (309)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 999999999986699748999945545836999998389978998289
No 114
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.73 E-value=20 Score=16.39 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+=+==.+ +..-|...-+||++++=+
T Consensus 231 gTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A~~rl~~s~i~~ivvTdT 278 (321)
T PRK02269 231 GTICHAADALAEAGATAVYASCTHPVLSGPALDNIQKSAIEKLIVLDT 278 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCEEEEECC
T ss_conf 669999999984899827999978027847999986089988998089
No 115
>PRK08309 short chain dehydrogenase; Provisional
Probab=34.20 E-value=27 Score=15.59 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=16.1
Q ss_pred HHCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCEEEEH
Q ss_conf 72021136532222101-3566676420144036631
Q gi|254780348|r 162 NMIGMAGCGSVPITGFI-SKNQVHLLRAQSDAILVGI 197 (364)
Q Consensus 162 GkIa~~~g~s~wIT~~~-sr~~vh~lRa~~DaIlvG~ 197 (364)
||+ ..++.|.|+|+++ |.--..-+|...+-.+||.
T Consensus 138 GFv-~e~~~sRWLTHeEIS~GVi~Ai~~~~~~~ivG~ 173 (182)
T PRK08309 138 GFI-LEDTYSRWLTHEEISDGVIKAIESDCDEHIVGR 173 (182)
T ss_pred EEE-EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 889-718864146458999999999865797279877
No 116
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=34.16 E-value=34 Score=14.87 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=6.9
Q ss_pred HCCCCEEEEHHHHCCCC
Q ss_conf 01440366312201345
Q gi|254780348|r 188 AQSDAILVGIGTVLADD 204 (364)
Q Consensus 188 a~~DaIlvG~~Tv~~Dn 204 (364)
....+++..+.|+..++
T Consensus 674 ~~~~~vi~tSATLtv~~ 690 (932)
T PRK08074 674 AEKKSVILTSATLTVNG 690 (932)
T ss_pred HCCCEEEEEECCCCCCC
T ss_conf 43785999814678898
No 117
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; InterPro: IPR010182 This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0046872 metal ion binding, 0009085 lysine biosynthetic process.
Probab=33.85 E-value=26 Score=15.71 Aligned_cols=61 Identities=26% Similarity=0.326 Sum_probs=41.6
Q ss_pred EEEECCEEEEEEECCCCCCCHHHHHHHHHHC---CHHCCCE--EEEECCC--CCCCCCCCHHHHHHHHCCCCE
Q ss_conf 9986998999984388769848999999730---0106988--9990573--211575210555653013432
Q gi|254780348|r 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAG---EEARGAT--AYVTLEP--CSHYGRSPPCAQFIIECGIRR 99 (364)
Q Consensus 34 viv~~g~ii~~g~~~~~G~~HAE~~al~~~~---~~~~~at--lyvtLEP--C~h~GktppC~~~ii~~gIk~ 99 (364)
-+.+|||+.|+|.+...|+-=|=+-|+.... -++.|-- +.|-=|= |.=.| +..+++.|..+
T Consensus 104 ~~ekdGK~yGRGa~DMKgG~~a~~~A~~~l~~~~~~~~g~~~l~~V~dEE~~~g~~G-----~~~~~~~G~~~ 171 (427)
T TIGR01910 104 PVEKDGKLYGRGATDMKGGLVALLYALKALREAGLKLNGNIILQAVVDEEETSGEAG-----TLYLLQKGYFK 171 (427)
T ss_pred CEEECCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHCCCCCHH-----HHHHHHHHHHH
T ss_conf 378768077556651268999999999999964889774079988537010552256-----89999976541
No 118
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=33.76 E-value=24 Score=15.90 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 278899998607996999812------3899999997889889999960
Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 274 dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364)
.+...-+.|.++|..+|++-+ |+.+ .-|+..-+||++++=+
T Consensus 354 TL~~AA~~Lke~GAk~VyA~aTHGVfSg~Ai--erI~~S~I~evVVTDT 400 (443)
T PTZ00145 354 TLCEAAKQLKKHGARRVFAFATHGLFSGPAI--DRIEKSPLEEVVVTDT 400 (443)
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHH--HHHHCCCCCEEEECCC
T ss_conf 7999999999679987999997730785489--8975489978998788
No 119
>COG3624 PhnG Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=33.07 E-value=35 Score=14.75 Aligned_cols=27 Identities=37% Similarity=0.498 Sum_probs=21.7
Q ss_pred ECCE-EEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 6998-99998438876984899999973
Q gi|254780348|r 37 KDGI-VIGRGVTAYGGCPHAEVQALEEA 63 (364)
Q Consensus 37 ~~g~-ii~~g~~~~~G~~HAE~~al~~~ 63 (364)
.+|. ++|.||-......|||.-||-+|
T Consensus 75 ~~~~~~vGh~yv~Grdk~~AelaAi~DA 102 (151)
T COG3624 75 EDGTGTVGHGYVLGRDKRHAELAALIDA 102 (151)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 6787542035552577147699999999
No 120
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=32.76 E-value=35 Score=14.80 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=10.4
Q ss_pred CCCHHHHHHCCCHHHHC-CCCCCCCCC
Q ss_conf 42220110102787720-211365322
Q gi|254780348|r 148 KRSHITLKIAVSQDNMI-GMAGCGSVP 173 (364)
Q Consensus 148 ~rP~V~lK~A~SlDGkI-a~~~g~s~w 173 (364)
+|||++-....- -+| |+.+|+--|
T Consensus 134 krP~intd~VCk--ffieA~e~GkYgw 158 (299)
T COG5252 134 KRPWINTDRVCK--FFIEAMESGKYGW 158 (299)
T ss_pred CCCCCCHHHHHH--HHHHHHHCCCCCC
T ss_conf 577777238999--9999985487665
No 121
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=32.69 E-value=23 Score=15.99 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHH----HHHHHHCCCCCEEEEEEE
Q ss_conf 22788999986079969998123899----999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAV----AHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l----~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|..+|.+=+==.+ +-.-|...-+||++.+=+
T Consensus 218 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~rl~~s~i~~ivvTnT 265 (286)
T PRK00934 218 GTMAKAISILKEQGAKKIYVSCVHPVLVEDAINKIHSAGADELAVTNT 265 (286)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 889999999998699869999979007805999997489988998588
No 122
>PRK12412 pyridoxal kinase; Reviewed
Probab=32.68 E-value=36 Score=14.71 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 2278899998607996999812389
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAA 297 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~ 297 (364)
.++++..+.|.++|.+.|||-||..
T Consensus 155 ~~~~~aa~~l~~~G~~~VlikGGh~ 179 (268)
T PRK12412 155 EDMKEAAKKIHALGAKYVLIKGGSK 179 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999999999866797799716765
No 123
>pfam09263 PEX-2N Peroxisome biogenesis factor 1, N-terminal. Members of this family adopt a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation.
Probab=32.64 E-value=35 Score=14.81 Aligned_cols=29 Identities=34% Similarity=0.449 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHCCHH--CCCEEEEECCCCCC
Q ss_conf 769848999999730010--69889990573211
Q gi|254780348|r 50 GGCPHAEVQALEEAGEEA--RGATAYVTLEPCSH 81 (364)
Q Consensus 50 ~G~~HAE~~al~~~~~~~--~~atlyvtLEPC~h 81 (364)
.|..-||++ ++.|+++ ++ ---|=|+||+|
T Consensus 57 ~~envaEin--rq~gekLGl~d-GeQvfLkpCs~ 87 (87)
T pfam09263 57 LGENVAEIN--RQFAEKLGFSH-GDQVFLKPCSH 87 (87)
T ss_pred CCCCHHHHH--HHHHHHHCCCC-CCEEEEEECCC
T ss_conf 662189999--99888738775-67773423689
No 124
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=32.56 E-value=36 Score=14.70 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=24.4
Q ss_pred EEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf 7985465542101100223222223332227889999860799699981238
Q gi|254780348|r 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 (364)
Q Consensus 245 ~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~ 296 (364)
++.+...-+......+...-++++..+..+.+ .|+.|.++.=-||| |.++
T Consensus 307 Iva~N~~vd~~~A~~i~~~F~EvIiAP~f~~e-AL~iL~~KKNlRvl-~~~~ 356 (514)
T PRK00881 307 IIAFNREVDAETAEAIVKIFLEVIIAPSFDEE-ALEILAKKKNLRLL-ECGE 356 (514)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCEEEE-ECCC
T ss_conf 79962626899999999988874117889989-99998639856998-1588
No 125
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=32.32 E-value=36 Score=14.67 Aligned_cols=92 Identities=22% Similarity=0.209 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC------------C--CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 87698489999997300106988999057321------------1--575210555653013432466301012110124
Q gi|254780348|r 49 YGGCPHAEVQALEEAGEEARGATAYVTLEPCS------------H--YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 (364)
Q Consensus 49 ~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~------------h--~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gk 114 (364)
..||.||=..+|.+.+.- ..+||. |.+ . ......=.+...+..|.=||||-.+| +++|
T Consensus 12 sGGREHAia~kl~~S~~v---~~v~~a--PGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idLvvvGPE~P--L~~G- 83 (426)
T PRK13789 12 SGGRESAIAFALRKSNLL---SELKVF--PGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDLIVVGPEDP--LVAG- 83 (426)
T ss_pred CCHHHHHHHHHHHHCCCC---CEEEEE--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-
T ss_conf 888999999999619898---879998--89761123454544433866999999999984999999896688--8631-
Q ss_pred CCCCCCCCCCEEEECCCCH-----HHHHHHHHHHHCCCCCC
Q ss_conf 3311001898896222101-----23200122220113422
Q gi|254780348|r 115 GLQWLSQKGIIVDRMMESE-----GKIFLHAYLTRQVEKRS 150 (364)
Q Consensus 115 Gi~~L~~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP 150 (364)
=.+.|+++||.|-|--.+. ++.+-+.|+.+ ++-|
T Consensus 84 i~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~--~~IP 122 (426)
T PRK13789 84 FADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKE--AKIP 122 (426)
T ss_pred HHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHH--CCCC
T ss_conf 79998416991689598995051269899999997--2999
No 126
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=31.97 E-value=27 Score=15.60 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHCCCCEEE---EECC-------CCCCCCCCCCCCCCCCCCCE-EEECCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 521055565301343246---6301-------01211012433110018988-962221012320012222011342220
Q gi|254780348|r 84 RSPPCAQFIIECGIRRVV---VCVD-------DPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHI 152 (364)
Q Consensus 84 ktppC~~~ii~~gIk~Vv---i~~~-------DPnp~v~gkGi~~L~~~GI~-V~~~~~~~~~~ln~~f~~~~~~~rP~V 152 (364)
++|--...|+++=|+-|- |..+ |.+-+..-.-.++++++|++ |. +--.-+..+|+|=-.| =||
T Consensus 123 ~~p~~~~~iv~~vV~AV~~~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~-lHGRTRaQ~Y~G~A~w-----d~I 196 (336)
T TIGR00737 123 RDPDLIGKIVKAVVDAVDAQDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVT-LHGRTRAQGYEGEANW-----DII 196 (336)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEE-HHHHHHCCCCCCCCCH-----HHH
T ss_conf 5868999999999987518766516655156362448889999999872400021-1100000157887606-----899
Q ss_pred -HHHHCCCHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCC
Q ss_conf -110102787720-2113653222210135666764201440366312201345423
Q gi|254780348|r 153 -TLKIAVSQDNMI-GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 (364)
Q Consensus 153 -~lK~A~SlDGkI-a~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~L 207 (364)
.+|.|.+-+|-| ...||+ |++++.=+. -+-+.-+|+||||.+++ =+|=|
T Consensus 197 ~~vKq~v~~~GeiPVigNGD---i~~~~~A~~-~L~~TG~DGvm~gRG~l--G~PWl 247 (336)
T TIGR00737 197 ARVKQAVRKEGEIPVIGNGD---IFSPEDAKA-MLETTGADGVMIGRGAL--GNPWL 247 (336)
T ss_pred HHHHHHHHCCCCCCEECCCC---CCCHHHHHH-HHHHCCCCEEEEECHHC--CCCHH
T ss_conf 99999971687533222774---246789999-98637886898500222--78758
No 127
>KOG1596 consensus
Probab=31.94 E-value=27 Score=15.55 Aligned_cols=12 Identities=42% Similarity=0.639 Sum_probs=8.9
Q ss_pred EEEECCCCCCCC
Q ss_conf 999057321157
Q gi|254780348|r 72 AYVTLEPCSHYG 83 (364)
Q Consensus 72 lyvtLEPC~h~G 83 (364)
--|..||.-|.|
T Consensus 81 ~~v~vEPHRh~G 92 (317)
T KOG1596 81 SKVLVEPHRHAG 92 (317)
T ss_pred CEEEECCCCCCC
T ss_conf 657852365563
No 128
>CHL00012 ndhJ NADH dehydrogenase subunit J
Probab=31.32 E-value=32 Score=15.02 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 2322222333222788999986079969998123
Q gi|254780348|r 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 (364)
Q Consensus 262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG 295 (364)
-.||+++.+...+|..+-..|+..|++.+-+-||
T Consensus 23 ~~GvE~i~v~~~~~~~va~aL~~~GFnyL~~q~g 56 (158)
T CHL00012 23 YQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCA 56 (158)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 1553787666768699999999818541246632
No 129
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=31.08 E-value=23 Score=16.00 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=30.3
Q ss_pred CCCCCCCCCCCCHHHHHHH----HHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 2113653222210135666----764201440366312201345423544344443442157644668
Q gi|254780348|r 165 GMAGCGSVPITGFISKNQV----HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228 (364)
Q Consensus 165 a~~~g~s~wIT~~~sr~~v----h~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l 228 (364)
|...+.--++|||+|..-+ .+|....|-|.+-+.|-+.+ =+...+...|..+|+|+=.
T Consensus 107 a~~~~~vLYvSGEES~~QIk~RA~RLg~~~~~l~l~set~le~------Il~~i~~~kP~~lIIDSIQ 168 (372)
T cd01121 107 AKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLED------ILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred HHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH------HHHHHHHHCCCEEEEECHH
T ss_conf 8639938998245678999989998587887727884356999------9999997199889995622
No 130
>PRK05038 consensus
Probab=30.75 E-value=23 Score=15.96 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 2278899998607996999812------3899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364)
..+-..-+.|.++|.++|++-+ |+.. .-|...-+++++.+=+
T Consensus 227 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~A~--~~l~~s~i~~ivvTnT 274 (315)
T PRK05038 227 GTLCKAAEALKERGAKRVFAYATHPVFSGNAA--ENIRNSVIDEVIVTDT 274 (315)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH--HHHHCCCCCEEEEECC
T ss_conf 58999999999659986359986535583699--9986089988999289
No 131
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.66 E-value=29 Score=15.30 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCC
Q ss_conf 2101356667642014---4036631220134542354434444344215764466899802210034446707985465
Q gi|254780348|r 175 TGFISKNQVHLLRAQS---DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~---DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~ 251 (364)
+++.+......+|..+ ..+++|++||+.-.- ++.. ..-=..+++++..+-. +.+......+.++-.-
T Consensus 47 ~tp~a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~---~~~a---~~aGA~FiVSP~~~~~----v~~~a~~~~i~~iPG~ 116 (209)
T PRK06552 47 TNPFASEVIKELVERYKDDPEVLIGAGTVLDAVT---ARQA---ILAGAQFIVSPSFNRE----TAKICNRYQIPYLPGC 116 (209)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH---HHHH---HHCCCCEEECCCCCHH----HHHHHHHCCCCEECCC
T ss_conf 8975999999999981779981898872748999---9999---9859988976999899----9999998599641797
Q ss_pred CCCCHHHHCCCCCCCCCC---CCCCCHHHHHHHHHH-CCCCEEEECCH--HHHHHHHHHCCC
Q ss_conf 542101100223222223---332227889999860-79969998123--899999997889
Q gi|254780348|r 252 DDPVLALAFRKKNINIIY---CDCRDLKKLLTILVG-RGVTSLLVEGG--AAVAHSFINSRL 307 (364)
Q Consensus 252 ~~~~~~~~~~~~~v~vi~---~~~~dl~~iL~~L~~-~gi~~iLVEGG--~~l~~sfl~~~L 307 (364)
..+.........|.+++. .+... ...++.|.. ..--+++--|| ..-+..||++|.
T Consensus 117 ~TpsEi~~A~~~Ga~~vKlFPA~~~G-~~yikal~~p~p~~~~~ptGGV~~~N~~~~l~aG~ 177 (209)
T PRK06552 117 MTVTEIVTALEAGVDIVKLFPGSTVG-PSFISAIKGPLPQVNIMVTGGVSLDNVKDWFAAGA 177 (209)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHCC-HHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCC
T ss_conf 99999999998699958858333248-99999986648999288638999888999998799
No 132
>PRK09228 guanine deaminase; Provisional
Probab=30.40 E-value=39 Score=14.46 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.3
Q ss_pred EEEEEEECCEEEEEEEC
Q ss_conf 47999869989999843
Q gi|254780348|r 31 VACLIVKDGIVIGRGVT 47 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~~ 47 (364)
=|+|+|++|+|++.|-.
T Consensus 30 dGaVlVe~grI~aVG~~ 46 (429)
T PRK09228 30 DGLLLVEDGRIVAAGPY 46 (429)
T ss_pred CEEEEEECCEEEEECCH
T ss_conf 74999989999997787
No 133
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=30.25 E-value=39 Score=14.45 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred CEEEEEEECCEEEEE
Q ss_conf 647999869989999
Q gi|254780348|r 30 SVACLIVKDGIVIGR 44 (364)
Q Consensus 30 ~Vg~viv~~g~ii~~ 44 (364)
.|||||++||+|+=.
T Consensus 2 ~v~~ii~~~~kvLL~ 16 (122)
T cd04673 2 AVGAVVFRGGRVLLV 16 (122)
T ss_pred EEEEEEEECCEEEEE
T ss_conf 899999989999999
No 134
>PRK07326 short chain dehydrogenase; Provisional
Probab=29.44 E-value=21 Score=16.31 Aligned_cols=13 Identities=31% Similarity=0.151 Sum_probs=4.4
Q ss_pred EEECCCCCCCHHH
Q ss_conf 9843887698489
Q gi|254780348|r 44 RGVTAYGGCPHAE 56 (364)
Q Consensus 44 ~g~~~~~G~~HAE 56 (364)
+|-.+.-|..-|+
T Consensus 11 TGas~GIG~aiA~ 23 (235)
T PRK07326 11 TGGSKGIGFAVAE 23 (235)
T ss_pred ECCCCHHHHHHHH
T ss_conf 3826799999999
No 135
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=28.96 E-value=31 Score=15.17 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHC---CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--ECCCCH-HHHHHH--------HHHHHC
Q ss_conf 1157521055565301---34324663010121101243311001898896--222101-232001--------222201
Q gi|254780348|r 80 SHYGRSPPCAQFIIEC---GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD--RMMESE-GKIFLH--------AYLTRQ 145 (364)
Q Consensus 80 ~h~GktppC~~~ii~~---gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~--~~~~~~-~~~ln~--------~f~~~~ 145 (364)
.|+|-|.||..++... .-.-.|+-.. -.-|+..|+|-+.|.-|- -+...| |..+.- .|--.-
T Consensus 187 TmfGvttpCv~av~~~L~~~yDclvFHAT----GtGGra~EklAdsgll~gv~D~tttEVcd~l~ggVl~~~pdRf~a~a 262 (401)
T COG5441 187 TMFGVTTPCVQAVKPELEARYDCLVFHAT----GTGGRAMEKLADSGLLVGVLDITTTEVCDLLFGGVLPCTPDRFGAIA 262 (401)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEC----CCCCHHHHHHHHCCCEEEEEEEEHHHHHHHHHCCEECCCHHHHHHHH
T ss_conf 54036607899978987424567999833----77507799988548827899733676667773773037814665565
Q ss_pred CCCCCHHHHHHCCCHHHHCCC
Q ss_conf 134222011010278772021
Q gi|254780348|r 146 VEKRSHITLKIAVSQDNMIGM 166 (364)
Q Consensus 146 ~~~rP~V~lK~A~SlDGkIa~ 166 (364)
.++.|||..-=|..+=.+=|.
T Consensus 263 rt~lPyvgs~GAlDMVnf~a~ 283 (401)
T COG5441 263 RTGLPYVGSCGALDMVNFGAP 283 (401)
T ss_pred HCCCCCCCCCCCEEEECCCCC
T ss_conf 239982035660002337883
No 136
>PRK09356 imidazolonepropionase; Validated
Probab=28.91 E-value=36 Score=14.70 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.1
Q ss_pred EEEEEEECCEEEEEEECCCC
Q ss_conf 47999869989999843887
Q gi|254780348|r 31 VACLIVKDGIVIGRGVTAYG 50 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~~~~~ 50 (364)
=|+|+++||+|+..|-....
T Consensus 28 ~g~V~I~~grI~~VG~~~~~ 47 (401)
T PRK09356 28 DGAIAVKDGKIVWVGPEAEL 47 (401)
T ss_pred CCEEEEECCEEEEECCCCCC
T ss_conf 86899989999995589878
No 137
>PRK07205 hypothetical protein; Provisional
Probab=28.81 E-value=42 Score=14.29 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 964799986998999984388769848999999730
Q gi|254780348|r 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 (364)
Q Consensus 29 P~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~ 64 (364)
|+-.++ ++||++.|+|...-.|.--|-+.|++...
T Consensus 98 dPF~~~-i~dGkLYGRGa~DmKG~l~a~l~A~~~l~ 132 (444)
T PRK07205 98 DPFEAV-EADGCLFGRGTQDDKGPTMAALFAVKALL 132 (444)
T ss_pred CCCCEE-EECCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 998669-98999991475016668999999999999
No 138
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=28.50 E-value=16 Score=17.12 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-CCHHC--CCEEEEECCCCCCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 4899999973-00106--988999057321157521055565301--34324663010121101243311001898896
Q gi|254780348|r 54 HAEVQALEEA-GEEAR--GATAYVTLEPCSHYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 54 HAE~~al~~~-~~~~~--~atlyvtLEPC~h~GktppC~~~ii~~--gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
++|...+... +..++ -+-.|.-==||.|.|+-+ -++|.++ .-.++++++.|..- .+.|++.||.|-
T Consensus 51 i~EL~~l~~~~~~~~r~~ia~~~~er~~~~~~~~~a--De~i~~~a~~~~~~iVaTnD~eL------k~rlr~~GIPvi 121 (136)
T COG1412 51 IRELEKLKRKHRGKARIAIALKYAERLECIHKGRYA--DECLLEAALKHGRYIVATNDKEL------KRRLRENGIPVI 121 (136)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCH--HHHHHHHHHHCCCEEEEECCHHH------HHHHHHCCCCEE
T ss_conf 999999998627007789899986514723467776--89999999980988999489999------999998199779
No 139
>pfam02593 DUF166 Uncharacterized ArCR, COG1810.
Probab=28.42 E-value=23 Score=15.96 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=54.2
Q ss_pred HHCCCEEEEECCCCCCCCCCCHHHHHH----HHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE---CC--CCHHHH
Q ss_conf 106988999057321157521055565----301343246630101211012433110018988962---22--101232
Q gi|254780348|r 66 EARGATAYVTLEPCSHYGRSPPCAQFI----IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR---MM--ESEGKI 136 (364)
Q Consensus 66 ~~~~atlyvtLEPC~h~GktppC~~~i----i~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~---~~--~~~~~~ 136 (364)
+..++.++++.- .-|==+-.| -++|++-|+++.-.|.-...+ =.+.+.+.|++|.. .| ++....
T Consensus 46 ~~~~~Dl~i~y~------lhPDl~~~l~~~~~e~g~kalIvp~~~~~g~~~~-lk~~~e~~g~~~~~P~~~CsL~~~~~p 118 (215)
T pfam02593 46 EIPEADLVIAYG------LHPDLTLELAEIAAETGIKALIVPAEAPKGLRKG-LKEQLEEFGVEVEFPEPFCSLEPVGNP 118 (215)
T ss_pred CCCCCCEEEEEC------CCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH-HHHHHHHCCCEEECCCCCCCCCCCCCH
T ss_conf 677876899943------5950799999999864998899746886212899-999999759738778765578898886
Q ss_pred HHHHHHHHCCCCCCHHHHHHCCCHHHHCCC
Q ss_conf 001222201134222011010278772021
Q gi|254780348|r 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166 (364)
Q Consensus 137 ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~ 166 (364)
....|..+ .|||-+-+++ -||+|..
T Consensus 119 ~i~~F~~~--FG~P~~ev~v---~~~~I~~ 143 (215)
T pfam02593 119 VIDEFAER--FGRPELEVEV---EDGKIKD 143 (215)
T ss_pred HHHHHHHH--HCCCEEEEEE---CCCEEEE
T ss_conf 69999998--1996699997---4994999
No 140
>pfam02424 ApbE ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Probab=28.40 E-value=41 Score=14.34 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 77899999999999987088218889647999
Q gi|254780348|r 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI 35 (364)
Q Consensus 4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~vi 35 (364)
|+.=...++.|.++.++-.|.- +|.+|.++
T Consensus 31 s~el~~ll~~a~~~~~~T~G~F--D~tig~l~ 60 (254)
T pfam02424 31 SPELAEVLRAALRLSELSDGAF--DPTVGPLV 60 (254)
T ss_pred CHHHHHHHHHHHHHHHHCCCCC--CCHHHHHH
T ss_conf 9999999999999999709987--62146899
No 141
>pfam06427 UDP-g_GGTase UDP-glucose:Glycoprotein Glucosyltransferase. The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase.
Probab=28.38 E-value=36 Score=14.69 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHH
Q ss_conf 21013566676420144036631220134542354434444344215764466899802
Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 (364)
Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~ 233 (364)
.++.|++.+..++...+-.-+...-++ ||+.. +.+..-+.=.|.|+++...+..+
T Consensus 56 ls~~aQkl~~il~~l~~~~~v~i~i~l--nP~~~--~selPlkrFYR~V~~~~~~F~~~ 110 (210)
T pfam06427 56 LSREAQKLVSLLKVLSKLLNVSIRVFL--NPRAE--LSELPLKRFYRFVLEPELEFDAD 110 (210)
T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEE--CCCCC--CCCCCCEEEEEEECCCCCCCCCC
T ss_conf 997898999999999854596089997--88753--35685524687762787632789
No 142
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=28.08 E-value=43 Score=14.20 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH-HHHH
Q ss_conf 32222233322278899998607996999812389999-9997
Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH-SFIN 304 (364)
Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~-sfl~ 304 (364)
..+.+++.++.+.+.+-+.+...++..+|| ||+.|-. .|++
T Consensus 203 ~~i~IlYGGSVn~~N~~~i~~~~~vDG~LV-GgASL~~~~F~~ 244 (251)
T PRK00042 203 EKVRILYGGSVKPDNAAELFAQPDIDGALV-GGASLKAEDFLA 244 (251)
T ss_pred CCCCEEEECCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf 575388717789989999966889997985-158679899999
No 143
>KOG1255 consensus
Probab=27.78 E-value=43 Score=14.17 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCCCCCCCEEEEEE-ECCEEEEEEECCCCCCCHHHHH
Q ss_conf 82188896479998-6998999984388769848999
Q gi|254780348|r 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQ 58 (364)
Q Consensus 23 g~t~pNP~Vg~viv-~~g~ii~~g~~~~~G~~HAE~~ 58 (364)
..|.+| +.+ +|-++|-+|||.+.|+=|++..
T Consensus 27 ~~T~~n-----l~ink~TkVi~QGfTGKqgTFHs~q~ 58 (329)
T KOG1255 27 NKTISN-----LKINKDTKVICQGFTGKQGTFHSQQA 58 (329)
T ss_pred HHHHHC-----EEECCCCEEEEECCCCCCCCEEHHHH
T ss_conf 312221-----46458865998323577653207888
No 144
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=27.51 E-value=43 Score=14.16 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.3
Q ss_pred EEEE-ECCEEEEEEECCCCCCCHHHHH
Q ss_conf 9998-6998999984388769848999
Q gi|254780348|r 33 CLIV-KDGIVIGRGVTAYGGCPHAEVQ 58 (364)
Q Consensus 33 ~viv-~~g~ii~~g~~~~~G~~HAE~~ 58 (364)
++++ ++-+++=+|.|.+.|+-|++.+
T Consensus 2 ~ili~~~trv~vqGiTG~~g~~h~~~m 28 (289)
T PRK05678 2 SILINKDTKVIVQGITGKQGTFHTEQM 28 (289)
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 389659983999878883777999999
No 145
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.38 E-value=44 Score=14.12 Aligned_cols=41 Identities=29% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCCCEEEEEEE-CCEEEEEEECC-------CCC----CCHHHHHHHHHHCCHH
Q ss_conf 88964799986-99899998438-------876----9848999999730010
Q gi|254780348|r 27 TNPSVACLIVK-DGIVIGRGVTA-------YGG----CPHAEVQALEEAGEEA 67 (364)
Q Consensus 27 pNP~Vg~viv~-~g~ii~~g~~~-------~~G----~~HAE~~al~~~~~~~ 67 (364)
|-|.|||||.+ +|+|+=.-... ..| +-.+|.-|.+...+..
T Consensus 1 P~v~V~avI~~~~g~vLl~r~~~~~g~W~lPGG~ve~gEs~~~aa~RE~~EEt 53 (125)
T cd04696 1 PLVTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREET 53 (125)
T ss_pred CCCEEEEEEEECCCEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 90179999994999899999369999598986588699599999999999975
No 146
>PRK12494 NADH dehydrogenase subunit J; Provisional
Probab=27.37 E-value=26 Score=15.63 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf 22322222333222788999986079969998123
Q gi|254780348|r 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 (364)
Q Consensus 261 ~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG 295 (364)
.-.||+++.++..+|..+-..|+..|++.+.+-||
T Consensus 36 D~~GvE~i~V~p~~l~~va~aL~~~GFnyL~~q~~ 70 (172)
T PRK12494 36 DHLGVEIIKVEPDFLLPIATALYAYGFNYLQCQGG 70 (172)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHCCCCHHHHEEE
T ss_conf 64643773147899999999999828500001102
No 147
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=27.16 E-value=44 Score=14.10 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 2113653222210135666764201440
Q gi|254780348|r 165 GMAGCGSVPITGFISKNQVHLLRAQSDA 192 (364)
Q Consensus 165 a~~~g~s~wIT~~~sr~~vh~lRa~~Da 192 (364)
|.+.++.. ++....+++.|-+++||
T Consensus 161 aYPE~Hpe---a~~~~~D~~nLK~KVdA 185 (302)
T TIGR00676 161 AYPEKHPE---APNLEEDIENLKRKVDA 185 (302)
T ss_pred ECCCCCCC---CCCHHHHHHHHHHHHHH
T ss_conf 25887888---88889999999998862
No 148
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=27.12 E-value=44 Score=14.09 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=19.7
Q ss_pred CCCCCCEEEEEEECCEEEEEEEC
Q ss_conf 18889647999869989999843
Q gi|254780348|r 25 TSTNPSVACLIVKDGIVIGRGVT 47 (364)
Q Consensus 25 t~pNP~Vg~viv~~g~ii~~g~~ 47 (364)
...+|-+-||.|+||+|++.|-.
T Consensus 18 ~~~~p~aeAvaI~dGrI~avG~~ 40 (535)
T COG1574 18 DEARPTAEAVAIKDGRIVAVGSD 40 (535)
T ss_pred CCCCCCEEEEEECCCEEEEECCH
T ss_conf 68886435899739989997586
No 149
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415 This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=26.99 E-value=15 Score=17.18 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=35.7
Q ss_pred CEEEEECCCCCC---CCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 889990573211---575210555653013432466301012110124331100189889622
Q gi|254780348|r 70 ATAYVTLEPCSH---YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 (364)
Q Consensus 70 atlyvtLEPC~h---~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~ 129 (364)
+.+|=+|.---- |-|+= =++.||+ | +++=.||-....++.|+.|+++||.|+.+
T Consensus 506 avAtk~l~~~e~~Pt~~~~D-E~~liie-G----~l~FlDPpKest~~AiaaL~~ngi~VKvL 562 (892)
T TIGR01524 506 AVATKKLDASEADPTYSKED-EEELIIE-G----YLAFLDPPKESTKKAIAALKKNGIAVKVL 562 (892)
T ss_pred EEEEEECCCCCCCCCCCEEC-HHHHHHH-H----HHHCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 67763046788886641307-7788899-7----76406880101799999998579789996
No 150
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=26.99 E-value=45 Score=14.08 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHCCHHCCCEEEEE--------CCCCCCCCC--CCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 876984899999973001069889990--------573211575--2105556530134324663010121101243311
Q gi|254780348|r 49 YGGCPHAEVQALEEAGEEARGATAYVT--------LEPCSHYGR--SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 (364)
Q Consensus 49 ~~G~~HAE~~al~~~~~~~~~atlyvt--------LEPC~h~Gk--tppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~ 118 (364)
..|+.||=..+|.+.+. -..+||. +-.|....- ..-=.+...+.+|.=||||-.+| +++| =.+.
T Consensus 8 sGgREHAia~kl~~s~~---v~~v~~~PGN~G~~~~~~~~~i~~~d~~~l~~~a~~~~idlviiGPE~p--L~~G-i~D~ 81 (424)
T PRK00885 8 SGGREHALAWKLAQSPL---VEKVYVAPGNAGTALEAENVAIDVTDIEALVAFAKEEGIDLTVVGPEAP--LVAG-IVDA 81 (424)
T ss_pred CCHHHHHHHHHHHHCCC---CCEEEEECCCHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHH
T ss_conf 88899999999973979---8989992897588741736512857999999999984999999896678--8735-7999
Q ss_pred CCCCCCEEEECCC
Q ss_conf 0018988962221
Q gi|254780348|r 119 LSQKGIIVDRMME 131 (364)
Q Consensus 119 L~~~GI~V~~~~~ 131 (364)
|+++||.|-|--.
T Consensus 82 l~~~gi~vfGP~k 94 (424)
T PRK00885 82 FRAAGLKIFGPTK 94 (424)
T ss_pred HHHCCCCEECCCH
T ss_conf 9506994689497
No 151
>PRK06427 phosphomethylpyrimidine kinase; Reviewed
Probab=26.90 E-value=45 Score=14.06 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHHHH-----HHHHCCCCCEEEEEEECEEEC
Q ss_conf 278899998607996999812389999-----999788988999996074326
Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEGGAAVAH-----SFINSRLVDSIILYRSQIVIG 321 (364)
Q Consensus 274 dl~~iL~~L~~~gi~~iLVEGG~~l~~-----sfl~~~LvDEl~ifiaP~ilG 321 (364)
+++..-+.|.+.|.+.|||-||-.--. -|+.. |+.+.|.+|.+-+
T Consensus 158 ~~~~aa~~l~~~G~~~VlikGGh~~~~~~~~D~l~~~---~~~~~~~~~ri~~ 207 (266)
T PRK06427 158 EMKAAARALLALGCKAVLIKGGHLDESESAVDLLFDG---EGFETFTAPRIPT 207 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEC---CEEEEEEECCCCC
T ss_conf 9999999999608984999477678888303899949---9079998133568
No 152
>KOG3549 consensus
Probab=26.84 E-value=45 Score=14.06 Aligned_cols=52 Identities=33% Similarity=0.602 Sum_probs=33.7
Q ss_pred CCCHHHH-HHHHHHCCH-------HCCCEEEEEC---CCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 6984899-999973001-------0698899905---73211575210555653013432466
Q gi|254780348|r 51 GCPHAEV-QALEEAGEE-------ARGATAYVTL---EPCSHYGRSPPCAQFIIECGIRRVVV 102 (364)
Q Consensus 51 G~~HAE~-~al~~~~~~-------~~~atlyvtL---EPC~h~GktppC~~~ii~~gIk~Vvi 102 (364)
..||-|+ +.|++||+. ++.|+.|.-| +||.-....--|+..+-++|.+--+-
T Consensus 115 ~c~HeevV~iLRNAGdeVtlTV~~lr~ApaFLklpL~~~~p~SD~ssg~sspl~DsGlhln~n 177 (505)
T KOG3549 115 ACPHEEVVNILRNAGDEVTLTVKHLRAAPAFLKLPLTKDTPDSDNSSGCSSPLADSGLHLNVN 177 (505)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 488089999987069879998276340868761746899998666666566345665132046
No 153
>KOG0881 consensus
Probab=26.50 E-value=37 Score=14.59 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCHHCCCEEEEECCCCC
Q ss_conf 89999997300106988999057321
Q gi|254780348|r 55 AEVQALEEAGEEARGATAYVTLEPCS 80 (364)
Q Consensus 55 AE~~al~~~~~~~~~atlyvtLEPC~ 80 (364)
|-+.++.+||.+..|+-.|+||.|--
T Consensus 93 AGILsMANaGPnTNgSQFFiTLAPt~ 118 (164)
T KOG0881 93 AGILSMANAGPNTNGSQFFITLAPTQ 118 (164)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 10100302699998754899936865
No 154
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=26.40 E-value=46 Score=14.01 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=35.0
Q ss_pred C-HHHHHHHHHH-CCCCEEEECCH--HHHHHHHHHCCCCCEEEE-EEEC-----EEECCC
Q ss_conf 2-7889999860-79969998123--899999997889889999-9607-----432688
Q gi|254780348|r 274 D-LKKLLTILVG-RGVTSLLVEGG--AAVAHSFINSRLVDSIIL-YRSQ-----IVIGEG 323 (364)
Q Consensus 274 d-l~~iL~~L~~-~gi~~iLVEGG--~~l~~sfl~~~LvDEl~i-fiaP-----~ilG~~ 323 (364)
+ |.++|+...+ .|+.==|==.| |+.+..+|++||||.+-+ ++|| .+.|..
T Consensus 79 ~eL~d~~~~v~~nlGf~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~ 138 (220)
T TIGR02495 79 GELGDFLREVRENLGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGRE 138 (220)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCC
T ss_conf 778999999998659278560678867899999860487578750147865674000633
No 155
>KOG1682 consensus
Probab=26.21 E-value=46 Score=13.98 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEE-----CCCCCCC-HHHHH
Q ss_conf 99999999870882188896479998-6998999984-----3887698-48999
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGV-----TAYGGCP-HAEVQ 58 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~-----~~~~G~~-HAE~~ 58 (364)
|--+++-+.+. -..|--+-|||. .+|+|.|-|+ |...|+. |||+-
T Consensus 60 M~~~Lq~~ll~---d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevF 111 (287)
T KOG1682 60 MMCALQDALLK---DKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVF 111 (287)
T ss_pred HHHHHHHHHHH---CCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHH
T ss_conf 99999999851---24446515999935885224654577762475520789999
No 156
>pfam00298 Ribosomal_L11 Ribosomal protein L11, RNA binding domain.
Probab=26.08 E-value=31 Score=15.13 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHC-CCCEEEEECCCCCCCCCC
Q ss_conf 521055565301-343246630101211012
Q gi|254780348|r 84 RSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG 113 (364)
Q Consensus 84 ktppC~~~ii~~-gIk~Vvi~~~DPnp~v~g 113 (364)
+|||-+..|.++ ||++ |+.+|+....|
T Consensus 1 ktPp~s~ll~kaagi~k---Gs~~p~~~~vG 28 (69)
T pfam00298 1 KTPPASYLLKKAAGIEK---GSGKPGKEKVG 28 (69)
T ss_pred CCCCHHHHHHHHHCCCC---CCCCCCCCEEE
T ss_conf 97978999999978586---78999991412
No 157
>TIGR03179 gua_deam guanine deaminase. This enzyme converts guanine to xanthine in the catabolism of guanine. Seed members were included by virtue of their proximity to other genes of the guanine/xanthine/urate/allantoate catabolic pathway. The guanine deaminase in E. coli has been characterized. Eukaryotic sequences were not included in the seed and fall below trusted to this model.
Probab=25.75 E-value=47 Score=13.93 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.6
Q ss_pred EEEEEEECCEEEEEEE
Q ss_conf 4799986998999984
Q gi|254780348|r 31 VACLIVKDGIVIGRGV 46 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~ 46 (364)
=|+|+|+||+|++.|-
T Consensus 29 dGaVlVedgrI~aVG~ 44 (427)
T TIGR03179 29 DGLLLVEDGRIAAAGP 44 (427)
T ss_pred CEEEEEECCEEEEECC
T ss_conf 8799998999999868
No 158
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=25.73 E-value=34 Score=14.86 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=4.7
Q ss_pred EEECCCCCCCCC
Q ss_conf 990573211575
Q gi|254780348|r 73 YVTLEPCSHYGR 84 (364)
Q Consensus 73 yvtLEPC~h~Gk 84 (364)
|.-.+=..|+|.
T Consensus 64 Y~l~q~HfHWG~ 75 (236)
T cd03118 64 YRLKQFHFHWGA 75 (236)
T ss_pred EEEEEEEECCCC
T ss_conf 899999983279
No 159
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=25.69 E-value=24 Score=15.93 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=40.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHH-CCCCEEEEECCCCCCCCCCCC---CCCCCCCCCEEEE
Q ss_conf 99905732115752105556530-134324663010121101243---3110018988962
Q gi|254780348|r 72 AYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRG---LQWLSQKGIIVDR 128 (364)
Q Consensus 72 lyvtLEPC~h~GktppC~~~ii~-~gIk~Vvi~~~DPnp~v~gkG---i~~L~~~GI~V~~ 128 (364)
+||==+|-+|+=+.--=-+.|++ |.=-+.|+=.+==||-|.|+| ++.|.++||+.+.
T Consensus 51 i~VGKr~g~h~~~Q~~IN~lLV~~A~~G~~VVRLKGGDP~vFGRgGEE~~~L~~~GI~~Ev 111 (242)
T TIGR01469 51 IDVGKRPGHHSVKQEEINRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAEAGIPFEV 111 (242)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEECCHHHHHHHHHHCCCCEEE
T ss_conf 7147779626889789999999998539858997489984378568999999966897987
No 160
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=25.09 E-value=48 Score=13.85 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHH-CCHHCCCEEEEECCCCCC
Q ss_conf 789999999999998708--82188896479998699899998438876984899999973-001069889990573211
Q gi|254780348|r 5 SFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSH 81 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~--g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~-~~~~~~atlyvtLEPC~h 81 (364)
+..++-|++|-..|..-. -.-.-.-+|-|||.+.- ..| -||..|-.+- ...-.|+|+ |.-||=+
T Consensus 23 sLEeqtm~mAk~~a~li~~~lr~~~G~~v~cviad~~---------Igg--~~eaa~~~e~F~~~~v~~ti--tVTpcWc 89 (588)
T PRK10991 23 SLEEQTMNMAKATAALITEKLRHACGAPVECVIADTC---------IGG--VAEAAACEEKFSSQNVGLTI--TVTPCWC 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC---------CCC--HHHHHHHHHHHHHCCCEEEE--EEECCCC
T ss_conf 5999999999999999985142799980479964654---------565--78889999876542832799--8602000
Q ss_pred CCC
Q ss_conf 575
Q gi|254780348|r 82 YGR 84 (364)
Q Consensus 82 ~Gk 84 (364)
||.
T Consensus 90 Ygs 92 (588)
T PRK10991 90 YGS 92 (588)
T ss_pred CCC
T ss_conf 352
No 161
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=25.05 E-value=48 Score=13.84 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=12.6
Q ss_pred CCCCCCCCCCH-HHHHHHHCCCCEEEEECC
Q ss_conf 73211575210-555653013432466301
Q gi|254780348|r 77 EPCSHYGRSPP-CAQFIIECGIRRVVVCVD 105 (364)
Q Consensus 77 EPC~h~Gktpp-C~~~ii~~gIk~Vvi~~~ 105 (364)
|--.-.|||=. ..-+|..+.=++|||++.
T Consensus 270 EAgTGtGKTlaYLlPaia~~~~~~vVIST~ 299 (820)
T PRK07246 270 EAQTGIGKTYGYLLPLLAQSDQNQIIVSVP 299 (820)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 889996479999999998437983999908
No 162
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=25.03 E-value=48 Score=13.84 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 556530134324663010121101243311001898896
Q gi|254780348|r 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 89 ~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
++.+...|+.-|+.+..-| +..+.|+++||+|-
T Consensus 54 ~~~~~~~g~~vvi~~~iG~------~a~~~L~~~GI~v~ 86 (102)
T cd00562 54 ARLLALEGCDAVLVGGIGG------PAAAKLEAAGIKPI 86 (102)
T ss_pred HHHHHHCCCCEEEECCCCH------HHHHHHHHCCCEEE
T ss_conf 7899888997999887598------89999998799999
No 163
>KOG0202 consensus
Probab=24.92 E-value=27 Score=15.57 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=20.1
Q ss_pred EEECCCCCCCC-CCCCCCCCCCCCCEEEE
Q ss_conf 66301012110-12433110018988962
Q gi|254780348|r 101 VVCVDDPDVRV-SGRGLQWLSQKGIIVDR 128 (364)
Q Consensus 101 vi~~~DPnp~v-~gkGi~~L~~~GI~V~~ 128 (364)
+||+.|| ||. ....|+.++++||.|..
T Consensus 578 lVGi~DP-PR~ev~~ai~~c~~aGIrV~m 605 (972)
T KOG0202 578 LVGILDP-PRPEVADAIELCRQAGIRVIM 605 (972)
T ss_pred EEECCCC-CCHHHHHHHHHHHHCCCEEEE
T ss_conf 7424689-965689999999973977999
No 164
>TIGR02213 lolE_release lipoprotein releasing system, transmembrane protein LolE; InterPro: IPR011926 This protein is part of an unusual ABC transporter complex that releases lipoproteins from the periplasmic side of the bacterial inner membrane, rather than transport any substrate across the inner membrane. In some species, the permease-like transmembrane protein is represented by two paralogs, LolC and LolE, both in the LolCDE complex. This family consists of LolE, as found in Escherichia coli and related species.; GO: 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=24.63 E-value=18 Score=16.70 Aligned_cols=15 Identities=47% Similarity=0.824 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHHCCH
Q ss_conf 984899999973001
Q gi|254780348|r 52 CPHAEVQALEEAGEE 66 (364)
Q Consensus 52 ~~HAE~~al~~~~~~ 66 (364)
-||||+.+..+|-+.
T Consensus 60 vPHaEie~v~nate~ 74 (416)
T TIGR02213 60 VPHAEIEAVDNATEA 74 (416)
T ss_pred ECCHHHHCCCCCCCC
T ss_conf 073453036533567
No 165
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=24.27 E-value=34 Score=14.92 Aligned_cols=90 Identities=24% Similarity=0.233 Sum_probs=50.6
Q ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHH--HHCCHHC--CCEEEEECCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 8821888964799986998999984388769848999999--7300106--98899905732115752105556530134
Q gi|254780348|r 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGI 97 (364)
Q Consensus 22 ~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~--~~~~~~~--~atlyvtLEPC~h~GktppC~~~ii~~gI 97 (364)
.|..-|-|+.==+-.++.. .-.-.....|..+-|...-- .+=+.++ +.+.++- .-|.|+| |.
T Consensus 49 ~GLpvPRppaeI~gg~~v~-~~~rv~~~~g~DVTe~~~~~a~~~L~~a~~~~~~~aIL------k~kSPSC-------G~ 114 (156)
T COG1683 49 GGLPVPRPPAEIVGGKDVL-GRARVVEDGGRDVTEAFLSGAERTLALAKEAGIDGAIL------KEKSPSC-------GS 114 (156)
T ss_pred CCCCCCCCCCEEECCCCCC-CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE------ECCCCCC-------CC
T ss_conf 4899999861655577611-33677337863189999999999999866528768999------6689998-------76
Q ss_pred CEEEEECCCCCCCCCCCCC--CCCCCCCCEE
Q ss_conf 3246630101211012433--1100189889
Q gi|254780348|r 98 RRVVVCVDDPDVRVSGRGL--QWLSQKGIIV 126 (364)
Q Consensus 98 k~Vvi~~~DPnp~v~gkGi--~~L~~~GI~V 126 (364)
++|+.+...=+- ..|.|+ ..|+++||+|
T Consensus 115 ~~vydg~f~G~~-~~G~Gvtaa~L~e~~~~v 144 (156)
T COG1683 115 GFVYDGSFSGKR-IAGSGVTAAALMENGIEV 144 (156)
T ss_pred EEEEEECCCCCC-CCCCCHHHHHHHHHCCCC
T ss_conf 024720667855-157447999999719814
No 166
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=24.24 E-value=21 Score=16.33 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf 2278899998607996999812389
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAA 297 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~ 297 (364)
.++....+.|.+.|.+.|++-||..
T Consensus 152 ~~~~~aa~~L~~~g~~~VlikGgh~ 176 (253)
T PRK12413 152 EDMKEAAKKLYDLGAKQVVIKGGNR 176 (253)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999999986699899988988
No 167
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=24.13 E-value=48 Score=13.86 Aligned_cols=126 Identities=21% Similarity=0.118 Sum_probs=48.4
Q ss_pred EEEEEEECCEEEEEEECCCCCCCHHHH-HHHHHHCCH-HCCCEE--EEECCCCCC-CCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 479998699899998438876984899-999973001-069889--990573211-575210555653013432466301
Q gi|254780348|r 31 VACLIVKDGIVIGRGVTAYGGCPHAEV-QALEEAGEE-ARGATA--YVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVD 105 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~~~~~G~~HAE~-~al~~~~~~-~~~atl--yvtLEPC~h-~GktppC~~~ii~~gIk~Vvi~~~ 105 (364)
..|+=+++|+.+-. +...+|+..... +.+..|..- ..||+. .|-|.=+.- .++.-+-...|.+.-
T Consensus 5 iPAIDl~~G~~VRL-~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~--------- 74 (241)
T COG0106 5 IPAIDLKDGKVVRL-VQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEAT--------- 74 (241)
T ss_pred EEEEEEECCEEEEE-ECCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC---------
T ss_conf 97477318879996-42467762472699899999999809958988626632158755499999999857---------
Q ss_pred CCCCCCCCCCC------CCCCCCCCE-EE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCC
Q ss_conf 01211012433------110018988-96-222101232001222201134222011010278772021136532222
Q gi|254780348|r 106 DPDVRVSGRGL------QWLSQKGII-VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 (364)
Q Consensus 106 DPnp~v~gkGi------~~L~~~GI~-V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT 175 (364)
+.|.--|.|| +.|.++|+. |. |-..- .|..|+......-| -+++.++|-|... .--+.|-.
T Consensus 75 -~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av----~~p~~v~~~~~~~g---~rivv~lD~r~g~-vav~GW~e 143 (241)
T COG0106 75 -DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAV----KNPDLVKELCEEYG---DRIVVALDARDGK-VAVSGWQE 143 (241)
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEEECCEE----CCHHHHHHHHHHCC---CCEEEEEECCCCC-CCCCCCHH
T ss_conf -9977840876789999999987998899803121----69999999999859---8289999714885-32046101
No 168
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=23.98 E-value=46 Score=13.99 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 22101356667642014403663122013454235443444434421576446689
Q gi|254780348|r 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 (364)
Q Consensus 174 IT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~ 229 (364)
.+++.+-+-.-.++.++.-+++|++||+... ++|.. ...=-++|++++..
T Consensus 46 l~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~---q~~~a---~~aGa~fiVsP~~~ 95 (211)
T COG0800 46 LRTPAALEAIRALAKEFPEALIGAGTVLNPE---QARQA---IAAGAQFIVSPGLN 95 (211)
T ss_pred CCCCCHHHHHHHHHHHCCCCEECCCCCCCHH---HHHHH---HHCCCCEEECCCCC
T ss_conf 4798789999999986746588245566999---99999---98599789899999
No 169
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=23.58 E-value=45 Score=14.04 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=9.7
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 73211575210555
Q gi|254780348|r 77 EPCSHYGRSPPCAQ 90 (364)
Q Consensus 77 EPC~h~GktppC~~ 90 (364)
-||.|+|+-+=|.=
T Consensus 79 p~C~~~~~CGGC~~ 92 (440)
T PRK13168 79 PRCPHFGVCGGCSL 92 (440)
T ss_pred CCCCCCCCCCCCHH
T ss_conf 98865677898064
No 170
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=23.02 E-value=29 Score=15.39 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHCCCCEEE
Q ss_conf 278899998607996999
Q gi|254780348|r 274 DLKKLLTILVGRGVTSLL 291 (364)
Q Consensus 274 dl~~iL~~L~~~gi~~iL 291 (364)
+...+++.|.++|..+|.
T Consensus 138 s~~~ai~~L~~~G~~~I~ 155 (208)
T PRK00129 138 SMIAAIDLLKKRGAKRIK 155 (208)
T ss_pred HHHHHHHHHHHCCCCEEE
T ss_conf 699999999966997389
No 171
>PRK09954 hypothetical protein; Provisional
Probab=22.73 E-value=53 Score=13.55 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=51.6
Q ss_pred CEEEEE---EECCEEEEEEECCCC-------CCCHHHHHHHHHHCCHHCCCE-EEEECCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 647999---869989999843887-------698489999997300106988-999057321157521055565301343
Q gi|254780348|r 30 SVACLI---VKDGIVIGRGVTAYG-------GCPHAEVQALEEAGEEARGAT-AYVTLEPCSHYGRSPPCAQFIIECGIR 98 (364)
Q Consensus 30 ~Vg~vi---v~~g~ii~~g~~~~~-------G~~HAE~~al~~~~~~~~~at-lyvtLEPC~h~GktppC~~~ii~~gIk 98 (364)
.|..-| .|.|.|.|+||-... |+.|=-+.......-...++. -.++..|- |+--==++.+-+.|.+
T Consensus 33 ~va~hi~~l~~kg~i~G~gyi~~~~~~vvvIGganiD~~g~~~~~l~~~~SNpg~i~~s~G---GvGrNiA~nLarLG~~ 109 (362)
T PRK09954 33 RVAAHIMDLMRKGRIKGKGYILTEQEYCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAG---GVGRNIAHNLALLGRD 109 (362)
T ss_pred HHHHHHHHHHHCCEECCCEEEECCCCCEEEECCCEEEEEECCCCCCCCCCCCCCEEEECCC---CHHHHHHHHHHHCCCC
T ss_conf 9999999887547652546887799718998870786430447766569999963688888---4899999999976997
Q ss_pred EEEEECCCCCCCCCCC-CCCCCCCCCCEEEECCC
Q ss_conf 2466301012110124-33110018988962221
Q gi|254780348|r 99 RVVVCVDDPDVRVSGR-GLQWLSQKGIIVDRMME 131 (364)
Q Consensus 99 ~Vvi~~~DPnp~v~gk-Gi~~L~~~GI~V~~~~~ 131 (364)
--.|+..--|+ .|+ =++.|+++||+++.+..
T Consensus 110 v~lIs~VG~D~--~G~~ll~~l~~~GVd~~~v~~ 141 (362)
T PRK09954 110 VHLLSAIGDDF--YGETLLEETRRAGVNVSGCIR 141 (362)
T ss_pred EEEEEEECCCH--HHHHHHHHHHHCCCCCCEEEE
T ss_conf 69999963858--799999999985997330798
No 172
>pfam03254 XG_FTase Xyloglucan fucosyltransferase. Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue.
Probab=22.61 E-value=27 Score=15.58 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=15.3
Q ss_pred HHHHHHHCCCCEEEECCHHHHHHHH
Q ss_conf 9999860799699981238999999
Q gi|254780348|r 278 LLTILVGRGVTSLLVEGGAAVAHSF 302 (364)
Q Consensus 278 iL~~L~~~gi~~iLVEGG~~l~~sf 302 (364)
.+.+++-..+..+||-.|-.+++..
T Consensus 408 AlaEmyLLSlsD~LVTS~~STFGYV 432 (477)
T pfam03254 408 ALAEIYLLSLSDVLVTSAWSTFGYV 432 (477)
T ss_pred HHHHHHHHHCCCCEEECCCCCHHHH
T ss_conf 9999999871562043587651426
No 173
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.43 E-value=27 Score=15.59 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=13.1
Q ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 1100189889622210123200122220113422201
Q gi|254780348|r 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 (364)
Q Consensus 117 ~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~ 153 (364)
+.|+++||.|.. ......+..-|..+-..+-||+.
T Consensus 25 ~~L~~~gi~v~~--Ddr~~~~g~k~~~a~~~giP~~i 59 (94)
T cd00738 25 NALLANGIRVLY--DDRERKIGKKFREADLRGVPFAV 59 (94)
T ss_pred HHHHHCCCEEEE--ECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 999988998999--87999975999999974998999
No 174
>PRK09568 DNA primase large subunit; Reviewed
Probab=22.43 E-value=36 Score=14.72 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=6.4
Q ss_pred HHHCCCCEEEEECCC
Q ss_conf 530134324663010
Q gi|254780348|r 92 IIECGIRRVVVCVDD 106 (364)
Q Consensus 92 ii~~gIk~Vvi~~~D 106 (364)
+...-+.+|++++.+
T Consensus 64 vlsf~~A~vlvs~~~ 78 (306)
T PRK09568 64 VLVFYTTLLILAVLN 78 (306)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999909
No 175
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=22.23 E-value=55 Score=13.49 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.5
Q ss_pred EEEEEEECCEEEEEEEC
Q ss_conf 47999869989999843
Q gi|254780348|r 31 VACLIVKDGIVIGRGVT 47 (364)
Q Consensus 31 Vg~viv~~g~ii~~g~~ 47 (364)
=|+|+|+||+|++.|-.
T Consensus 26 dgav~V~dg~I~aVG~~ 42 (429)
T cd01303 26 DGLIVVVDGNIIAAGAA 42 (429)
T ss_pred CCEEEEECCEEEEECCH
T ss_conf 87999999999998486
No 176
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.14 E-value=55 Score=13.47 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHHHHH---HHHCCCCCEEE
Q ss_conf 2788999986079969998123899999---99788988999
Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEGGAAVAHS---FINSRLVDSII 312 (364)
Q Consensus 274 dl~~iL~~L~~~gi~~iLVEGG~~l~~s---fl~~~LvDEl~ 312 (364)
..+.+.+.|.++|...+++-+|+.+-.. .|++-=+|++|
T Consensus 79 l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 79 LVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf 999999999981975548865686681367999981866546
No 177
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=22.04 E-value=52 Score=13.60 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=40.0
Q ss_pred HHHHCCHHCCCEEEE------ECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------CCCCCCCCCCCCEEE
Q ss_conf 997300106988999------05732115752105556530134324663010121101------243311001898896
Q gi|254780348|r 60 LEEAGEEARGATAYV------TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS------GRGLQWLSQKGIIVD 127 (364)
Q Consensus 60 l~~~~~~~~~atlyv------tLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~------gkGi~~L~~~GI~V~ 127 (364)
|..+.++.+|+.+-| .-.|-+|+|++ -++.|.+.|++-++|+++--=.... ++=+.+||+-|..+-
T Consensus 45 L~~~~~~v~G~~I~V~AQh~d~~~~GahTG~i--~Aem~~d~Ga~g~linHSErR~~~~laDElIe~~~~~~kelGL~~v 122 (244)
T TIGR00419 45 LPMVKDEVEGSEIPVYAQHVDAVKSGAHTGEI--SAEMLKDLGAKGTLINHSERRSLLKLADELIEKKVARLKELGLTSV 122 (244)
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCCCCCHHH--HHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 77999850799752244541011787652236--8999984599728876526666887657888999999986488279
No 178
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.68 E-value=56 Score=13.41 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=11.5
Q ss_pred CCEEEEEEECCEEEEE
Q ss_conf 9647999869989999
Q gi|254780348|r 29 PSVACLIVKDGIVIGR 44 (364)
Q Consensus 29 P~Vg~viv~~g~ii~~ 44 (364)
++|.|||+++|+|+=.
T Consensus 2 ~~a~AvI~~~~~vLL~ 17 (128)
T cd04687 2 NSAKAVIIKNDKILLI 17 (128)
T ss_pred CEEEEEEEECCEEEEE
T ss_conf 4799999989999999
No 179
>PRK12616 pyridoxal kinase; Reviewed
Probab=21.62 E-value=38 Score=14.52 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC--CEEEEEEECEEEC
Q ss_conf 227889999860799699981238999999978898--8999996074326
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV--DSIILYRSQIVIG 321 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~Lv--DEl~ifiaP~ilG 321 (364)
.++++.-+.|.+.|.+.+||-||..........-|+ ++.+.|.++.+-+
T Consensus 158 ~~~~~~a~~l~~~G~~~VlikGG~~~~~~~~~D~l~~~~~~~~~~~~ri~~ 208 (270)
T PRK12616 158 EQMKEAAKKIHELGAQYVLITGGGKLKHEKAVDVLYDGETAEVLESEMIDT 208 (270)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEECC
T ss_conf 999999999997079879990477877664258996598489986468779
No 180
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.57 E-value=47 Score=13.92 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHCCCCEEEEC--------CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 227889999860799699981--------23899999997889889999960
Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVE--------GGAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVE--------GG~~l~~sfl~~~LvDEl~ifia 316 (364)
..+...-+.|.++|..+|.+= +...-+...++++.+||++++=+
T Consensus 240 gTl~~aa~~Lk~~GA~~V~a~aTHgvfsg~A~eri~~~~~~~~i~~vvvTnT 291 (340)
T PRK00553 240 GTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNS 291 (340)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf 5699999999987998799999795148579999985202577658998578
No 181
>pfam10450 POC1 POC1 chaperone. In yeast, POC1 is a chaperone of the 20S proteasome which functions in early 20S proteasome assembly.
Probab=21.49 E-value=40 Score=14.41 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=9.8
Q ss_pred CCCCCHHHHHHHHHHH-HCCCCEEEEHHH
Q ss_conf 2222101356667642-014403663122
Q gi|254780348|r 172 VPITGFISKNQVHLLR-AQSDAILVGIGT 199 (364)
Q Consensus 172 ~wIT~~~sr~~vh~lR-a~~DaIlvG~~T 199 (364)
+|+.+..+|.....+| -+.|+-.+|+.+
T Consensus 191 q~l~~~~s~Y~~eC~r~Wrld~~a~GaQs 219 (223)
T pfam10450 191 KLLCSYPSQYSSECLRLWRLDEAAIGAQS 219 (223)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 98737848889999998641642213435
No 182
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=21.37 E-value=57 Score=13.37 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE---ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHC
Q ss_conf 5556530134324663010121101243311001898896---2221012320012222011342220110102787720
Q gi|254780348|r 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 (364)
Q Consensus 88 C~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~---~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkI 164 (364)
+.+.-.++|+.|||++.-|+.- .+.-++.|.+|- .-.+.-...+++ +.-|++..-|-.|
T Consensus 34 V~e~a~~s~~~rvvVATDde~I------~~av~~~G~~avmT~~~h~SGTdR~~E------------v~~~l~~~~~~iI 95 (247)
T COG1212 34 VAERALKSGADRVVVATDDERI------AEAVQAFGGEAVMTSKDHQSGTDRLAE------------VVEKLGLPDDEII 95 (247)
T ss_pred HHHHHHHCCCCEEEEECCCHHH------HHHHHHHCCEEEECCCCCCCCCHHHHH------------HHHHCCCCCCEEE
T ss_conf 9999987378728997498899------999997097899617888980089999------------9996599964299
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 21136532222101356667642014403663122013454235443444434421576446689
Q gi|254780348|r 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 (364)
Q Consensus 165 a~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~ 229 (364)
-.-.|+.-.|.-+.-|+....|+.. ++=|+...+-+.| .......+-.++|.|++++
T Consensus 96 VNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~-------~ee~~nPN~VKvV~d~~g~ 152 (247)
T COG1212 96 VNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITD-------EEEAFNPNVVKVVLDKEGY 152 (247)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCC-------HHHHCCCCCEEEEECCCCC
T ss_conf 9865887777979999999998737-7660455343378-------8884599827999759982
No 183
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein; InterPro: IPR013459 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of the gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source..
Probab=21.17 E-value=41 Score=14.33 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=95.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE-E--ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHH
Q ss_conf 0555653013432466301012110124331100189889-6--222101232001222201134222011010278772
Q gi|254780348|r 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D--RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 (364)
Q Consensus 87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V-~--~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGk 163 (364)
...+.+|.-++.-+-|++.||+-.|- ..++=.+.||.| + .-...||+.|.-.---.-.=||-.|.+ +|.
T Consensus 47 ~~vNsLiaQ~V~AIaiSAnDpdAlvp--alkkA~~rgI~Vv~~DS~v~pegR~l~~n~a~~~~IG~~~vql-~A~----- 118 (307)
T TIGR02637 47 EVVNSLIAQKVDAIAISANDPDALVP--ALKKAMKRGIKVVTWDSGVAPEGRKLFLNQADAELIGRTQVQL-AAE----- 118 (307)
T ss_pred HHHHHHHHCCEEEEEECCCCCCHHHH--HHHHHHHCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHH-HHH-----
T ss_conf 21000310570069970278522789--9999985698299852788813454422646831288999999-999-----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEHHHHCCCCCCCC---CCCCCCCCCCCEEEEECCCCCCCHHHHHCC
Q ss_conf 02113653222210135666764201--4403663122013454235---443444434421576446689980221003
Q gi|254780348|r 164 IGMAGCGSVPITGFISKNQVHLLRAQ--SDAILVGIGTVLADDPELT---CRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 (364)
Q Consensus 164 Ia~~~g~s~wIT~~~sr~~vh~lRa~--~DaIlvG~~Tv~~DnP~Lt---~R~~~~~~~~P~riVld~~l~i~~~~~l~~ 238 (364)
.|... -=|||.-+.|.-.-|-=.. -.+.+ +.+.-++.|
T Consensus 119 ---------------------~~~~~kG~~AILSAa~T~tNQN~WI~~mK~~Lk~-p~y~~~kLV--------------- 161 (307)
T TIGR02637 119 ---------------------QLEEGKGEIAILSAASTATNQNAWIEIMKKELKD-PKYPKVKLV--------------- 161 (307)
T ss_pred ---------------------HHCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCC-CCCCCCEEE---------------
T ss_conf ---------------------7178988588850331001467999999975478-778883079---------------
Q ss_pred CCCCCEEEEECCCCCCCH----HHHCC--CCCCCCCCCCC-CCHHHHHHHHHHCCCC-EEEEC--CHHHHHHHHHHCCCC
Q ss_conf 444670798546554210----11002--23222223332-2278899998607996-99981--238999999978898
Q gi|254780348|r 239 TALLAPVIIVTENDDPVL----ALAFR--KKNINIIYCDC-RDLKKLLTILVGRGVT-SLLVE--GGAAVAHSFINSRLV 308 (364)
Q Consensus 239 ~~~~~~~ii~~~~~~~~~----~~~~~--~~~v~vi~~~~-~dl~~iL~~L~~~gi~-~iLVE--GG~~l~~sfl~~~Lv 308 (364)
-++...+...| ...|. -.|++.|..++ .-..+.-+.+.+.+.. .|-|- |=|.=...|++.|-+
T Consensus 162 -------~~vYGDD~~~KS~~ea~GLl~s~PNlK~IiaPTTVGi~AAaq~~~d~~~~GkV~lTGLglPsem~~~vk~G~~ 234 (307)
T TIGR02637 162 -------AVVYGDDDAEKSYQEAQGLLKSYPNLKGIIAPTTVGIVAAAQAVEDAKLIGKVKLTGLGLPSEMAKYVKNGTV 234 (307)
T ss_pred -------EEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCC
T ss_conf -------9984678034118886136542897127878763889999988634883224887315782799988524630
Q ss_pred CEEEEEEECEEECCCCC
Q ss_conf 89999960743268875
Q gi|254780348|r 309 DSIILYRSQIVIGEGGI 325 (364)
Q Consensus 309 DEl~ifiaP~ilG~~g~ 325 (364)
.++-|. -|.-||-.+.
T Consensus 235 ~afalW-nPidLGy~a~ 250 (307)
T TIGR02637 235 KAFALW-NPIDLGYSAV 250 (307)
T ss_pred EEECCC-CCHHHHHHHH
T ss_conf 110036-8433678999
No 184
>TIGR02515 IV_pilus_PilQ type IV pilus secretin PilQ; InterPro: IPR013355 A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with the uptake of exogenous DNA, rather than with formation of a type IV pilus - the surface structure required for this may be considered an unusual, incomplete type IV pilus structure.; GO: 0009297 pilus biogenesis, 0009306 protein secretion.
Probab=21.17 E-value=56 Score=13.40 Aligned_cols=88 Identities=17% Similarity=0.045 Sum_probs=37.3
Q ss_pred CCCCCCCC---CCCCE-EE---ECCCCH--HHHHHHHHHHHCCCCCCHHHHHHCCCHHHH--CC--CCCCCCCCCCCHHH
Q ss_conf 24331100---18988-96---222101--232001222201134222011010278772--02--11365322221013
Q gi|254780348|r 113 GRGLQWLS---QKGII-VD---RMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IG--MAGCGSVPITGFIS 179 (364)
Q Consensus 113 gkGi~~L~---~~GI~-V~---~~~~~~--~~~ln~~f~~~~~~~rP~V~lK~A~SlDGk--Ia--~~~g~s~wIT~~~s 179 (364)
-||..+=| +.+|- |- -+...| ..+..+.--.......=++.+++|.--|=. |- ..++.+.-+++...
T Consensus 57 ~KgL~~r~~~s~GNi~~iAP~~el~~~e~~~l~~~~~~~~l~~L~te~i~lnYa~A~di~k~l~~~~~~~~~~~~~~~~~ 136 (464)
T TIGR02515 57 SKGLDKRRESSDGNIIYIAPADELAAREKDELEAKKQIENLEPLQTELIQLNYAKASDIAKVLTGDREIKEEGGGTTGGK 136 (464)
T ss_pred HCCCCCEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 35865245112788699758799889999999999999851164212078852378999999721244666666556200
Q ss_pred HHHHHHHHHC-------CCCEEEEHHHHCCCC
Q ss_conf 5666764201-------440366312201345
Q gi|254780348|r 180 KNQVHLLRAQ-------SDAILVGIGTVLADD 204 (364)
Q Consensus 180 r~~vh~lRa~-------~DaIlvG~~Tv~~Dn 204 (364)
-.. -+. ..++|-..|+|..|.
T Consensus 137 ~~~----ls~~~~A~~~~~~~LS~RGSvt~D~ 164 (464)
T TIGR02515 137 GGL----LSGDAAALDVGNAVLSERGSVTVDP 164 (464)
T ss_pred CCC----CCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 366----5200233430232038986089742
No 185
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=20.83 E-value=58 Score=13.30 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCCCC--CCCCCCCCCCCCEE
Q ss_conf 34324663010121101--24331100189889
Q gi|254780348|r 96 GIRRVVVCVDDPDVRVS--GRGLQWLSQKGIIV 126 (364)
Q Consensus 96 gIk~Vvi~~~DPnp~v~--gkGi~~L~~~GI~V 126 (364)
|+.=+=+|-..|||+.. -||+++-|+.+|+.
T Consensus 56 g~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idf 88 (384)
T COG1979 56 GIEVIEFGGVEPNPRLETLMKAVEICKEENIDF 88 (384)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 866999448778954899999999999739639
No 186
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.81 E-value=52 Score=13.63 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 752105556530134324663010121101243311001898896
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
.+--...+.+|..|+.-+++...|++-... .++.++++||.|-
T Consensus 47 ~~Q~~~ie~lI~qgvDaIiv~p~d~~a~~~--~v~~a~~aGIpVV 89 (274)
T cd06311 47 EQQNAQQDLLINRKIDALVILPFESAPLTQ--PVAKAKKAGIFVV 89 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCHHHHHH--HHHHHHHCCCEEE
T ss_conf 999999999997499999995797788899--9999998699799
No 187
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=20.75 E-value=59 Score=13.29 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCCCCCCCC--CCHHHHHHHHHHCCCCEEEE--CCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 23222223332--22788999986079969998--123899999997889889999960
Q gi|254780348|r 262 KKNINIIYCDC--RDLKKLLTILVGRGVTSLLV--EGGAAVAHSFINSRLVDSIILYRS 316 (364)
Q Consensus 262 ~~~v~vi~~~~--~dl~~iL~~L~~~gi~~iLV--EGG~~l~~sfl~~~LvDEl~ifia 316 (364)
.....++.++- .-+..+++.+.+.++++|.+ .=+-.++..|+..|-+|.++++-.
T Consensus 70 nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 70 NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEECC
T ss_conf 89877899997348999999999982998469980779999973589885657999799
No 188
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=20.69 E-value=59 Score=13.28 Aligned_cols=54 Identities=28% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCCCCCCCEE---EEEE-ECCEE-EEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC
Q ss_conf 88218889647---9998-69989-99984388769848999999730010698899905732115
Q gi|254780348|r 22 VGLTSTNPSVA---CLIV-KDGIV-IGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 (364)
Q Consensus 22 ~g~t~pNP~Vg---~viv-~~g~i-i~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~ 82 (364)
.|.+..||-.| +|+. .+++. ++.+.- ..-..-||.+|+-.|=+.++. ++||+-.
T Consensus 9 DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~------~~~~~v~ 67 (154)
T COG0328 9 DGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKE------LGACEVT 67 (154)
T ss_pred CCCCCCCCCCCEEEEEEECCCCEEEEEEEEE-CCCCHHHHHHHHHHHHHHHHH------CCCCEEE
T ss_conf 6766899987348999981884378864130-236759999999999999986------5980499
No 189
>pfam02579 Nitro_FeMo-Co Dinitrogenase iron-molybdenum cofactor. This family contains several NIF (B, Y and X) proteins which are iron-molybdenum cofactors (FeMo-co) in the dinitrogenase enzyme which catalyses the reduction of dinitrogen to ammonium. Dinitrogenase is a hetero-tetrameric (alpha(2)beta(2)) enzyme which contains the iron-molybdenum cofactor (FeMo-co) at its active site.
Probab=20.62 E-value=59 Score=13.27 Aligned_cols=35 Identities=31% Similarity=0.309 Sum_probs=21.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 05556530134324663010121101243311001898896
Q gi|254780348|r 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
..++.+...|+.-|+++..=| +..+.|+++||+|-
T Consensus 44 ~~~~~l~~~~~~~vi~~~iG~------~a~~~L~~~gI~v~ 78 (94)
T pfam02579 44 KLAQLLALEGVDAVIVGGIGP------NALAKLEAAGIKVY 78 (94)
T ss_pred HHHHHHHHCCCCEEEECCCCH------HHHHHHHHCCCEEE
T ss_conf 299999976998999687598------89999998899999
No 190
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.61 E-value=59 Score=13.27 Aligned_cols=41 Identities=27% Similarity=0.561 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH-HHHHHH
Q ss_conf 322222333222788999986079969998123899-999997
Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV-AHSFIN 304 (364)
Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l-~~sfl~ 304 (364)
..+.+++.++.+.+.+-+.+...++..+|| ||+.| ...|++
T Consensus 198 ~~v~iLYGGSV~~~N~~~i~~~~~vdG~Lv-G~ASl~~~~F~~ 239 (242)
T cd00311 198 EKVRILYGGSVNPENAAELLAQPDIDGVLV-GGASLKAESFLD 239 (242)
T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf 675489607789889999956899997885-357678889999
No 191
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=20.46 E-value=59 Score=13.25 Aligned_cols=67 Identities=33% Similarity=0.462 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHCC-CCCCC-CCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHH-CCHHCCCEEEEECCCCCC
Q ss_conf 789999999999998708-82188-896479998699899998438876984899999973-001069889990573211
Q gi|254780348|r 5 SFDARFMSAALRFSRWHV-GLTST-NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSH 81 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~-g~t~p-NP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~-~~~~~~atlyvtLEPC~h 81 (364)
++.++-|.+|-..|+.-. -..+| .-+|-|||.+.- | .| -||..|-.+- +..-.+.|+ |.-||=+
T Consensus 19 SLE~qTM~mAk~~a~l~~~~lr~~~G~pVecVIadtt--I-------gg--v~Eaa~c~ekF~~~~V~~tl--tVTPCWC 85 (584)
T cd03556 19 SLEEQTMNMAKAAAKLIEENLKYADGEPVECVIADTT--I-------GR--VAEAAACAEKFTRENVGATI--TVTPCWC 85 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--C-------CC--HHHHHHHHHHHHHCCCCEEE--EEECCCC
T ss_conf 5999999999999999986140789984689963665--4-------44--88889999987662864699--9712023
Q ss_pred CCC
Q ss_conf 575
Q gi|254780348|r 82 YGR 84 (364)
Q Consensus 82 ~Gk 84 (364)
||.
T Consensus 86 YGs 88 (584)
T cd03556 86 YGS 88 (584)
T ss_pred CCC
T ss_conf 565
No 192
>pfam04319 NifZ NifZ domain. This short protein is found in the nif (nitrogen fixation) operon. Its function is unknown but is probably involved in nitrogen fixation or regulating some component of this process. This 75 residue region is presumed to be a domain. It is found in isolation in some members and in the amino terminal half of the longer NifZ proteins.
Probab=20.45 E-value=59 Score=13.24 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=18.1
Q ss_pred CCCCCCEEEEEEEC---CEEEEEEECCC
Q ss_conf 18889647999869---98999984388
Q gi|254780348|r 25 TSTNPSVACLIVKD---GIVIGRGVTAY 49 (364)
Q Consensus 25 t~pNP~Vg~viv~~---g~ii~~g~~~~ 49 (364)
|.|.-..|+++|+. |.|++.|.+.+
T Consensus 22 T~pg~~~G~lLv~~G~~G~V~~iG~~lq 49 (75)
T pfam04319 22 TFPGKEIGELLVRKGDVGYVVSIGTFLQ 49 (75)
T ss_pred CCCCCCCCCEEECCCCCEEEEEEEEEEE
T ss_conf 8898988888884899489998268845
No 193
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=20.38 E-value=60 Score=13.24 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=8.0
Q ss_pred EECCEEEEEEECCCC
Q ss_conf 869989999843887
Q gi|254780348|r 36 VKDGIVIGRGVTAYG 50 (364)
Q Consensus 36 v~~g~ii~~g~~~~~ 50 (364)
+-.|...|+-|+-..
T Consensus 36 ~l~G~amGT~~~I~~ 50 (351)
T PRK10461 36 VLEGKTMGTFWRVSV 50 (351)
T ss_pred EEEEEECCEEEEEEE
T ss_conf 778763680899999
No 194
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.37 E-value=60 Score=13.23 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 752105556530134324663010121101243311001898896
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364)
.......+.+++.|++-|.++.-+|.+ -++.|+++|+.|-
T Consensus 67 ~~~~~~~~~~~~~~v~~v~~~~g~p~~-----~v~~l~~~g~~v~ 106 (236)
T cd04730 67 PDFEALLEVALEEGVPVVSFSFGPPAE-----VVERLKAAGIKVI 106 (236)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCHH-----HHHHHHHCCCEEE
T ss_conf 368999999997699999987989789-----9999998299899
No 195
>TIGR00615 recR recombination protein RecR; InterPro: IPR000093 The bacterial protein recR seems to play a role in a recombinational process of DNA repair . It may act with recF and recO. RecR is a protein of about 200 amino acid residues. This protein contains a putative C4-type zinc finger in the N-terminal section.; GO: 0006281 DNA repair, 0006310 DNA recombination.
Probab=20.37 E-value=57 Score=13.36 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCC
Q ss_conf 22278899998607996999812389999999788988999996074326887
Q gi|254780348|r 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 (364)
Q Consensus 272 ~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g 324 (364)
..++..+++.+++| |++.-|.|+++=..|.+=|+..
T Consensus 124 ~~~i~~L~~riGeR-----------------l~~~~~~EVIlA~nPt~EGeaT 159 (205)
T TIGR00615 124 DLKIAALLKRIGER-----------------LQEESVKEVILATNPTVEGEAT 159 (205)
T ss_pred CCCHHHHHHHHHCC-----------------CCCCCCCEEEEECCCCCHHHHH
T ss_conf 21468899886000-----------------0005797788607898413479
Done!