HHsearch results for GI: 254780348 and protein with PDBid: 2a8n_A
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97 E-value=6.5e-31 Score=227.45 Aligned_cols=129 Identities=32% Similarity=0.402 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf 78999999999999870882188896479998699899998438----87698489999997300-----1069889990
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT 75 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt 75 (364)
+.|++||++||++|+++. ..++||||||||+||+||++|+|. ..+..|||++|+++|.. ...++|+|+|
T Consensus 2 ~~~~~fM~~Al~~A~~a~--~~g~~PvGavIV~~g~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~t 79 (144)
T 2a8n_A 2 AERTHFMELALVEARSAG--ERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT 79 (144)
T ss_dssp CCHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHH--CCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf 606999999999999863--069998899999899999984203102688640189999999999718873476333256
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHH
Q ss_conf 5732115752105556530134324663010121101243311001898----896-22210123200122
Q gi|254780348|r 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAY 141 (364)
Q Consensus 76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f 141 (364)
+||| |+|+.+|+++||+|||||+.||++.+.|++++.+.+.++ +|. |++++||.+|++.|
T Consensus 80 ~EPC------~mC~~ai~~~gI~rVvyg~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~E~~~L~~~F 144 (144)
T 2a8n_A 80 LEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp ECCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred CCCC------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf 7898------7899999996999899997089977556188987604799998899486899999997479