HHsearch results for GI: 254780348 and protein with PDBid: 2a8n_A

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97  E-value=6.5e-31  Score=227.45  Aligned_cols=129  Identities=32%  Similarity=0.402  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf             78999999999999870882188896479998699899998438----87698489999997300-----1069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt   75 (364)
                      +.|++||++||++|+++.  ..++||||||||+||+||++|+|.    ..+..|||++|+++|..     ...++|+|+|
T Consensus         2 ~~~~~fM~~Al~~A~~a~--~~g~~PvGavIV~~g~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~t   79 (144)
T 2a8n_A            2 AERTHFMELALVEARSAG--ERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT   79 (144)
T ss_dssp             CCHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf             606999999999999863--069998899999899999984203102688640189999999999718873476333256


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHH
Q ss_conf             5732115752105556530134324663010121101243311001898----896-22210123200122
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAY  141 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f  141 (364)
                      +|||      |+|+.+|+++||+|||||+.||++.+.|++++.+.+.++    +|. |++++||.+|++.|
T Consensus        80 ~EPC------~mC~~ai~~~gI~rVvyg~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~E~~~L~~~F  144 (144)
T 2a8n_A           80 LEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF  144 (144)
T ss_dssp             ECCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred             CCCC------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf             7898------7899999996999899997089977556188987604799998899486899999997479