HHsearch results for GI: 254780348 and protein with PDBid: 2gd9_A

>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis}
Probab=99.96  E-value=2.1e-30  Score=223.97  Aligned_cols=184  Identities=18%  Similarity=0.159  Sum_probs=141.8

Q ss_pred             HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             01134222011010278772021136532222101356667642014403663122013454235443444434421576
Q gi|254780348|r  144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII  223 (364)
Q Consensus       144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riV  223 (364)
                      ...+.|| |++|+|+|+|||||..+|.+.|+|++.++. .|.+|+++||||+|++|+..|+|.++.|... ...+|.+++
T Consensus         4 ~~~~~Rk-vi~~~A~SlDG~ia~~~g~~~w~~~~~~~~-~~~~~~~~dail~G~~T~~~~~~~~~~~~~~-~~~~~~~~~   80 (189)
T 2gd9_A            4 NNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMG-FTDFLNQIDTILYGRKSFDLWGQYIPKNEDP-DTEKELWKL   80 (189)
T ss_dssp             CCCCCCC-EEEEEEECTTSEEECTTSCCTTCCCCTTSC-HHHHHHTEEEEEEEHHHHHHHTTC-----------CCHHHH
T ss_pred             CCCCCCE-EEEEEEEECCCCEECCCCCCCCCCCHHHHH-HHHHHHHCCCEEECCCEEEEECCCCCCCCCC-CCCCCCCEE
T ss_conf             8898681-999999908988799999847758768889-9999986797875672799765757637677-656872212


Q ss_pred             ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             44668998022100344467079854655421011002232222233322278899998607996999812389999999
Q gi|254780348|r  224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI  303 (364)
Q Consensus       224 ld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl  303 (364)
                      +++.                +.++++.......      ..   ...-..|+.++++.+.+.++++|++|||++++++|+
T Consensus        81 ~~~~----------------~~~v~s~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~~~v~veGG~~l~~~~l  135 (189)
T 2gd9_A           81 VHSK----------------KKYVFSRTQNEID------NQ---AIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFI  135 (189)
T ss_dssp             HHHS----------------EEEEECCEEETTT------TE---EECCHHHHHHHHHHHHHSCCSEEEEEECHHHHHHHH
T ss_pred             CCCC----------------CEEEEECCCCCCC------CC---EEEEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             2677----------------4141002235566------64---389846889999999974897199967616778776


Q ss_pred             HCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEEC
Q ss_conf             7889889999960743268875233345454446405446886793-69999507
Q gi|254780348|r  304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK  357 (364)
Q Consensus       304 ~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k  357 (364)
                      +++||||+++|++|+++|+ |.+.+ ........|++.+++.++++ ++++|.++
T Consensus       136 ~~glvDel~l~i~P~ilG~-G~~~f-~~~~~~~~l~L~~~~~~~~g~v~l~Y~~~  188 (189)
T 2gd9_A          136 NLGLVDEFRLSIHPVVLGE-GKPLF-IDVKQRINLKMVNTRTFSSGVVQIVYHWN  188 (189)
T ss_dssp             HTTCCCEEEEEECSEECSS-SEESS-CSCCSCEECEEEEEEECTTSCEEEEEEC-
T ss_pred             HCCCCCEEEEEEECEEECC-CCCCC-CCCCCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf             4673427899982679889-72267-77777888689788992899899999858