HHsearch results for GI: 254780348 and protein with PDBid: 2gd9_A
>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=2.1e-30 Score=223.97 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=141.8
Q ss_pred HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 01134222011010278772021136532222101356667642014403663122013454235443444434421576
Q gi|254780348|r 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223 (364)
Q Consensus 144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riV 223 (364)
...+.|| |++|+|+|+|||||..+|.+.|+|++.++. .|.+|+++||||+|++|+..|+|.++.|... ...+|.+++
T Consensus 4 ~~~~~Rk-vi~~~A~SlDG~ia~~~g~~~w~~~~~~~~-~~~~~~~~dail~G~~T~~~~~~~~~~~~~~-~~~~~~~~~ 80 (189)
T 2gd9_A 4 NNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMG-FTDFLNQIDTILYGRKSFDLWGQYIPKNEDP-DTEKELWKL 80 (189)
T ss_dssp CCCCCCC-EEEEEEECTTSEEECTTSCCTTCCCCTTSC-HHHHHHTEEEEEEEHHHHHHHTTC-----------CCHHHH
T ss_pred CCCCCCE-EEEEEEEECCCCEECCCCCCCCCCCHHHHH-HHHHHHHCCCEEECCCEEEEECCCCCCCCCC-CCCCCCCEE
T ss_conf 8898681-999999908988799999847758768889-9999986797875672799765757637677-656872212
Q ss_pred ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf 44668998022100344467079854655421011002232222233322278899998607996999812389999999
Q gi|254780348|r 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364)
Q Consensus 224 ld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364)
+++. +.++++....... .. ...-..|+.++++.+.+.++++|++|||++++++|+
T Consensus 81 ~~~~----------------~~~v~s~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~~~v~veGG~~l~~~~l 135 (189)
T 2gd9_A 81 VHSK----------------KKYVFSRTQNEID------NQ---AIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFI 135 (189)
T ss_dssp HHHS----------------EEEEECCEEETTT------TE---EECCHHHHHHHHHHHHHSCCSEEEEEECHHHHHHHH
T ss_pred CCCC----------------CEEEEECCCCCCC------CC---EEEEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 2677----------------4141002235566------64---389846889999999974897199967616778776
Q ss_pred HCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEEC
Q ss_conf 7889889999960743268875233345454446405446886793-69999507
Q gi|254780348|r 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357 (364)
Q Consensus 304 ~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k 357 (364)
+++||||+++|++|+++|+ |.+.+ ........|++.+++.++++ ++++|.++
T Consensus 136 ~~glvDel~l~i~P~ilG~-G~~~f-~~~~~~~~l~L~~~~~~~~g~v~l~Y~~~ 188 (189)
T 2gd9_A 136 NLGLVDEFRLSIHPVVLGE-GKPLF-IDVKQRINLKMVNTRTFSSGVVQIVYHWN 188 (189)
T ss_dssp HTTCCCEEEEEECSEECSS-SEESS-CSCCSCEECEEEEEEECTTSCEEEEEEC-
T ss_pred HCCCCCEEEEEEECEEECC-CCCCC-CCCCCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf 4673427899982679889-72267-77777888689788992899899999858