HHsearch results for GI: 254780348 and protein with PDBid: 3ky8_A
>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=1.3e-25 Score=191.61 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=129.6
Q ss_pred HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH----HHHHCCCCEEEEHHHHCCCCCCCCCCCCCC
Q ss_conf 1222201134222011010278772021136532222101356667----642014403663122013454235443444
Q gi|254780348|r 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPELTCRLNGL 214 (364)
Q Consensus 139 ~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh----~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~ 214 (364)
+.||+.-..+ | +.+|+|+|||||.++|+++|||++.++..+| .+|+++||||+|.+|+..+.+.. ...
T Consensus 13 ~~~~~~~M~~---I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~dailvGr~Ty~~~~~~~----~~~ 84 (197)
T 3ky8_A 13 ENLYFQGMAN---I-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFD----CDW 84 (197)
T ss_dssp CCTTTTTCEE---E-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHHHHCCTT----CCC
T ss_pred HHHHHHCCCC---E-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCEECCCCCC----CCC
T ss_conf 5656605700---0-3999948782189899836847988878999999999854899997814110335557----556
Q ss_pred CCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf 43442157644668998022100344467079854655421011002232222233322278899998607996999812
Q gi|254780348|r 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 (364)
Q Consensus 215 ~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEG 294 (364)
. ..|.++|+++...-.. .. ....+ . .-..++.++++.|.+.|.+.+++||
T Consensus 85 ~-~~~~~~V~s~~~~~~~-----~~-~~~~v--------------------~---~~~~d~~~~l~~l~~~g~~~i~igG 134 (197)
T 3ky8_A 85 P-YSKPVFVLSNTMTEVP-----QG-YEDKV--------------------F---LVKGKLVDIIADLNAKGFNELYIDG 134 (197)
T ss_dssp C-CSSCEEEECSSCCSCC-----TT-CTTTE--------------------E---EECSCHHHHHHHHHHTTCCEEEEES
T ss_pred C-CCCCEEEECCCCCCCC-----CC-CCCCE--------------------E---EECCCHHHHHHHHHHCCCCEEEECC
T ss_conf 6-7887899706666455-----46-89989--------------------9---9829979999999967996699816
Q ss_pred HHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEECC
Q ss_conf 3899999997889889999960743268875233345454446405446886793-699995074
Q gi|254780348|r 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358 (364)
Q Consensus 295 G~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k~ 358 (364)
|+. +++||++|||||+++|++|+++|+ |.+.+ .......+|++++++.++++ +.++|.+|.
T Consensus 135 g~~-~~~~l~~gLvDEl~l~i~P~llG~-G~~lF-~~~~~~~~L~L~~~~~~~~g~v~l~Y~~kr 196 (197)
T 3ky8_A 135 GVT-IQNFLKEDLIDEMVITRFPILLGG-GVPLF-GELESSLSFNVIKSEVVLDSLTQTTYHRKR 196 (197)
T ss_dssp HHH-HHHHHHTTCCCEEEEEEESEECSS-SEESC-CCCSSCEEEEEEEEEEETTTEEEEEEEECC
T ss_pred CCC-CHHHHHCCCCCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEECCCCEEEEEEEEEE
T ss_conf 761-100120688755799992379758-85166-777767677896889928986999999950