HHsearch results for GI: 254780348 and protein with PDBid: 3ky8_A

>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94  E-value=1.3e-25  Score=191.61  Aligned_cols=179  Identities=18%  Similarity=0.194  Sum_probs=129.6

Q ss_pred             HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH----HHHHCCCCEEEEHHHHCCCCCCCCCCCCCC
Q ss_conf             1222201134222011010278772021136532222101356667----642014403663122013454235443444
Q gi|254780348|r  139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPELTCRLNGL  214 (364)
Q Consensus       139 ~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh----~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~  214 (364)
                      +.||+.-..+   | +.+|+|+|||||.++|+++|||++.++..+|    .+|+++||||+|.+|+..+.+..    ...
T Consensus        13 ~~~~~~~M~~---I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~dailvGr~Ty~~~~~~~----~~~   84 (197)
T 3ky8_A           13 ENLYFQGMAN---I-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFD----CDW   84 (197)
T ss_dssp             CCTTTTTCEE---E-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHHHHCCTT----CCC
T ss_pred             HHHHHHCCCC---E-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCEECCCCCC----CCC
T ss_conf             5656605700---0-3999948782189899836847988878999999999854899997814110335557----556


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf             43442157644668998022100344467079854655421011002232222233322278899998607996999812
Q gi|254780348|r  215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG  294 (364)
Q Consensus       215 ~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEG  294 (364)
                      . ..|.++|+++...-..     .. ....+                    .   .-..++.++++.|.+.|.+.+++||
T Consensus        85 ~-~~~~~~V~s~~~~~~~-----~~-~~~~v--------------------~---~~~~d~~~~l~~l~~~g~~~i~igG  134 (197)
T 3ky8_A           85 P-YSKPVFVLSNTMTEVP-----QG-YEDKV--------------------F---LVKGKLVDIIADLNAKGFNELYIDG  134 (197)
T ss_dssp             C-CSSCEEEECSSCCSCC-----TT-CTTTE--------------------E---EECSCHHHHHHHHHHTTCCEEEEES
T ss_pred             C-CCCCEEEECCCCCCCC-----CC-CCCCE--------------------E---EECCCHHHHHHHHHHCCCCEEEECC
T ss_conf             6-7887899706666455-----46-89989--------------------9---9829979999999967996699816


Q ss_pred             HHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEECC
Q ss_conf             3899999997889889999960743268875233345454446405446886793-699995074
Q gi|254780348|r  295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN  358 (364)
Q Consensus       295 G~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k~  358 (364)
                      |+. +++||++|||||+++|++|+++|+ |.+.+ .......+|++++++.++++ +.++|.+|.
T Consensus       135 g~~-~~~~l~~gLvDEl~l~i~P~llG~-G~~lF-~~~~~~~~L~L~~~~~~~~g~v~l~Y~~kr  196 (197)
T 3ky8_A          135 GVT-IQNFLKEDLIDEMVITRFPILLGG-GVPLF-GELESSLSFNVIKSEVVLDSLTQTTYHRKR  196 (197)
T ss_dssp             HHH-HHHHHHTTCCCEEEEEEESEECSS-SEESC-CCCSSCEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             CCC-CHHHHHCCCCCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEECCCCEEEEEEEEEE
T ss_conf             761-100120688755799992379758-85166-777767677896889928986999999950