Query         gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 364
No_of_seqs    245 out of 4143
Neff          7.0 
Searched_HMMs 23785
Date          Mon May 30 09:31:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780348.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2b3z_A Riboflavin biosynthesis 100.0       0       0  857.9  27.9  355    3-358    10-372 (373)
  2 2g6v_A Riboflavin biosynthesis 100.0       0       0  825.1  27.1  356    1-358    24-395 (402)
  3 2hxv_A Diaminohydroxyphosphori 100.0       0       0  778.9  28.8  343    4-363    11-360 (360)
  4 2p4g_A Hypothetical protein; p 100.0       0       0  332.9  15.5  223  135-358    19-262 (270)
  5 2azn_A HTP reductase, putative 100.0 1.4E-45       0  325.3  16.7  209  147-358     1-219 (219)
  6 1z3a_A TRNA-specific adenosine 100.0 4.3E-39 1.8E-43  282.6  10.9  148    5-161     7-168 (168)
  7 2nx8_A TRNA-specific adenosine 100.0 2.1E-37 8.8E-42  271.3  11.0  155    1-163     9-178 (179)
  8 2b3j_A TRNA adenosine deaminas 100.0 1.6E-34 6.8E-39  251.8  12.9  139    5-151     5-157 (159)
  9 1wwr_A TRNA adenosine deaminas 100.0 1.1E-32 4.6E-37  239.4  12.9  135    6-148    22-169 (171)
 10 3kgy_A Bifunctional deaminase- 100.0   2E-32 8.5E-37  237.7   8.9  210  143-356    14-230 (231)
 11 2a8n_A Cytidine and deoxycytid 100.0 6.5E-31 2.7E-35  227.4  12.6  129    5-141     2-144 (144)
 12 1p6o_A Cytosine deaminase; hyd 100.0   3E-30 1.3E-34  223.0  10.5  131    3-144    10-150 (161)
 13 3dh1_A TRNA-specific adenosine 100.0 1.1E-29 4.6E-34  219.2  12.3  143    5-155    24-188 (189)
 14 2gd9_A Hypothetical protein YY 100.0 2.1E-30   9E-35  224.0   7.5  184  144-357     4-188 (189)
 15 1wkq_A Guanine deaminase; doma 100.0 5.7E-29 2.4E-33  214.4  11.7  138    6-151    10-164 (164)
 16 1vq2_A DCMP deaminase, deoxycy  99.9   3E-27 1.3E-31  202.8  10.1  128    7-145     3-190 (193)
 17 3jtw_A Dihydrofolate reductase  99.9   6E-27 2.5E-31  200.7  11.5  168  152-356     6-177 (178)
 18 2w4l_A DCMP deaminse, deoxycyt  99.9 8.9E-27 3.7E-31  199.5   9.1  136    4-151    10-171 (178)
 19 2hvw_A Deoxycytidylate deamina  99.9 9.8E-27 4.1E-31  199.3   8.8  116    5-132    40-177 (184)
 20 3ky8_A Putative riboflavin bio  99.9 1.3E-25 5.6E-30  191.6  14.6  179  139-358    13-196 (197)
 21 2g84_A Cytidine and deoxycytid  99.9 1.7E-25 7.1E-30  190.9  10.4  133    4-144    25-182 (197)
 22 1cz3_A Dihydrofolate reductase  99.8 5.9E-18 2.5E-22  140.0  13.8  161  152-358     3-165 (168)
 23 1vdr_A DHFR, dihydrofolate red  98.6   1E-06 4.2E-11   64.2  11.2  157  152-358     3-159 (162)
 24 3dfr_A Dihydrofolate reductase  98.4 9.9E-06 4.2E-10   57.5  12.8  152  154-358     3-162 (162)
 25 3nrr_A Dihydrofolate reductase  98.3 1.2E-05 4.9E-10   57.0  12.2  159  151-358    14-192 (515)
 26 1j3k_A Bifunctional dihydrofol  98.3 3.2E-05 1.3E-09   54.1  14.1   82  273-358   144-230 (280)
 27 1kmv_A DHFR, dihydrofolate red  98.3 1.1E-05 4.7E-10   57.2  10.6  128  154-323     6-145 (186)
 28 2fzi_A Dihydrofolate reductase  98.2 4.5E-06 1.9E-10   59.8   7.9  133  148-323     3-153 (206)
 29 3ix9_A Dihydrofolate reductase  98.2 4.8E-05   2E-09   52.9  12.7  158  151-359    24-188 (190)
 30 2bl9_A Dihydrofolate reductase  98.0 0.00021 8.7E-09   48.6  12.4   79  274-356   154-237 (238)
 31 3jsu_A Dihydrofolate reductase  97.9  0.0005 2.1E-08   46.0  14.0   82  273-358   144-230 (608)
 32 2w3w_A Dihydrofolate reductase  97.8 0.00013 5.3E-09   50.1   9.3  125  148-321     2-128 (167)
 33 1zdr_A Dihydrofolate reductase  97.8 0.00035 1.5E-08   47.1  10.8  153  152-359     2-163 (164)
 34 3ia4_A Dihydrofolate reductase  97.7  0.0011 4.6E-08   43.8  12.7  151  152-358     3-162 (162)
 35 3dau_A Dihydrofolate reductase  97.6 0.00086 3.6E-08   44.4  11.0  151  152-357     2-159 (159)
 36 3jwk_A Dihydrofolate reductase  97.6 0.00071   3E-08   45.0  10.4  151  152-358     9-168 (168)
 37 3cse_A Dihydrofolate reductase  97.6 0.00037 1.6E-08   46.9   8.9  132  147-320     2-146 (227)
 38 1df7_A DHFR, dihydrofolate red  97.4  0.0013 5.4E-08   43.3   9.7  117  152-321     2-120 (159)
 39 2z3g_A Blasticidin-S deaminase  97.4  0.0014 5.7E-08   43.1   9.6   94    1-103     1-107 (130)
 40 3hj3_A Chain A, crystal struct  97.3  0.0024   1E-07   41.4   9.4  127  149-317     4-137 (521)
 41 1aoe_A DHFR, dihydrofolate red  97.1 0.00086 3.6E-08   44.4   6.2  125  149-317     3-136 (192)
 42 2w9h_A DHFR, dihydrofolate red  97.1  0.0029 1.2E-07   40.9   8.7  149  153-358     4-159 (159)
 43 1r5t_A Cytidine deaminase; zin  96.7   0.012 4.9E-07   36.8   8.9   92    1-99      1-110 (142)
 44 3irm_A Bifunctional dihydrofol  96.5  0.0037 1.5E-07   40.2   5.2  143  153-323    24-188 (521)
 45 2fr5_A Cytidine deaminase; zin  96.4   0.016 6.9E-07   35.8   8.3   81    9-97     17-111 (146)
 46 3dmo_A Cytidine deaminase; str  96.4   0.014 5.8E-07   36.3   7.8   96    4-106     7-117 (138)
 47 3b8f_A Putative blasticidin S   95.9   0.029 1.2E-06   34.1   7.2   87    6-102     3-107 (142)
 48 2d30_A Cytidine deaminase; pur  95.8   0.042 1.8E-06   33.1   7.8   92    7-106    12-118 (141)
 49 2nyt_A Probable C->U-editing e  95.4   0.022 9.2E-07   34.9   5.3  118   28-154    32-171 (190)
 50 1uwz_A Cytidine deaminase; CDD  95.4   0.061 2.6E-06   31.9   7.5   91    7-106     3-107 (136)
 51 1juv_A DHFR, dihydrofolate red  95.3   0.074 3.1E-06   31.4   7.6  138  157-322    15-154 (193)
 52 3mpz_A Cytidine deaminase; ssg  95.3   0.055 2.3E-06   32.3   6.9   87    8-102    26-125 (150)
 53 3g8q_A Predicted RNA-binding p  95.2   0.095   4E-06   30.6   8.0   92   26-133    19-110 (278)
 54 3oj6_A Blasticidin-S deaminase  95.1    0.19 8.1E-06   28.6   9.3   84    3-96     27-123 (158)
 55 1ctt_A Cytidine deaminase; hyd  95.0    0.15 6.5E-06   29.2   8.5   80    9-96     51-140 (294)
 56 3ir2_A DNA DC->DU-editing enzy  94.2   0.099 4.2E-06   30.5   6.1   94   52-154    78-184 (207)
 57 3lqk_A Dipicolinate synthase s  79.6     1.1 4.5E-05   23.6   2.8  175   96-293     6-195 (201)
 58 3lp8_A Phosphoribosylamine-gly  72.6     1.6 6.6E-05   22.4   2.1  103   51-161    31-148 (442)
 59 3mcu_A Dipicolinate synthase,   72.2       2 8.6E-05   21.6   2.6  172   97-293     5-193 (207)
 60 1vk9_A Conserved hypothetical   71.0     5.2 0.00022   18.9   7.3   95    7-127    14-108 (151)
 61 1twd_A Copper homeostasis prot  70.0     3.5 0.00015   20.1   3.4   28   92-119    82-109 (256)
 62 1w0m_A TIM, triosephosphate is  67.9     5.2 0.00022   18.9   4.0   50   75-127    66-118 (226)
 63 1zcz_A Bifunctional purine bio  62.0     7.7 0.00032   17.8   8.0   94   11-126   216-309 (464)
 64 2qk4_A Trifunctional purine bi  61.6     3.2 0.00014   20.3   1.9   79   41-130    29-119 (452)
 65 1i4n_A Indole-3-glycerol phosp  58.3     3.6 0.00015   20.0   1.7   31  176-206   210-240 (251)
 66 1hg3_A Triosephosphate isomera  57.8     8.4 0.00035   17.5   3.5   28   77-106    71-98  (225)
 67 2yrx_A Phosphoribosylglycinami  55.2     6.1 0.00026   18.5   2.4  106   51-162    31-149 (451)
 68 3icj_A Uncharacterized metal-d  50.8     7.4 0.00031   17.9   2.3   52   25-83     49-105 (534)
 69 2yw2_A Phosphoribosylamine--gl  50.3       7 0.00029   18.1   2.1  107   41-162     5-128 (424)
 70 1mxs_A KDPG aldolase; 2-keto-3  50.2     5.4 0.00023   18.8   1.5   28  175-202    60-87  (225)
 71 2cxh_A Probable BRIX-domain ri  48.1      13 0.00053   16.3   3.4   19  274-292    71-89  (217)
 72 3mjf_A Phosphoribosylamine--gl  48.1     5.9 0.00025   18.5   1.4  103   51-161    13-132 (431)
 73 2yx6_A Hypothetical protein PH  47.5     9.6  0.0004   17.1   2.4   32   89-126    56-87  (121)
 74 1o13_A Probable NIFB protein;   46.4      10 0.00042   17.0   2.4   11  296-306    87-97  (136)
 75 1pii_A N-(5'phosphoribosyl)ant  46.3     5.2 0.00022   18.9   0.9   92  119-210   153-250 (452)
 76 2ip4_A PURD, phosphoribosylami  44.9     6.7 0.00028   18.2   1.3  108   41-161     5-126 (417)
 77 1dku_A Protein (phosphoribosyl  44.3       8 0.00034   17.6   1.6   42  273-316   231-278 (317)
 78 3lab_A Putative KDPG (2-keto-3  44.0     7.8 0.00033   17.7   1.5  122  175-307    47-181 (217)
 79 2h06_A Ribose-phosphate pyroph  43.8       7 0.00029   18.0   1.3   41  274-316   228-274 (326)
 80 1qa6_A Ribosomal protein L11;   42.0     7.9 0.00033   17.7   1.3   27   84-113     1-28  (67)
 81 1jl1_A Ribonuclease HI; RNAse   41.6      16 0.00067   15.6   3.9   44   23-67     11-59  (155)
 82 1eo1_A Hypothetical protein MT  40.1      15 0.00065   15.7   2.6   28  263-291    64-91  (124)
 83 3byp_A CZRB protein; membrane   40.0      13 0.00056   16.2   2.2   36   52-87     58-94  (94)
 84 2dgd_A 223AA long hypothetical  39.9       9 0.00038   17.3   1.3   41   86-127    97-137 (223)
 85 1rdu_A Conserved hypothetical   39.8      17 0.00071   15.5   4.3   10  117-126    77-86  (116)
 86 3ggm_A Uncharacterized protein  39.7      17 0.00071   15.4   3.1   21   26-46     18-38  (81)
 87 3krs_A Triosephosphate isomera  38.2     8.1 0.00034   17.6   0.9  220   41-304    27-265 (271)
 88 1vhc_A Putative KHG/KDPG aldol  37.7      12 0.00049   16.5   1.6   28  175-202    51-78  (224)
 89 3o8s_A Nudix hydrolase, ADP-ri  36.0      15 0.00064   15.7   2.0   17  176-192    27-43  (206)
 90 2ji4_A Phosphoribosyl pyrophos  35.6      12  0.0005   16.5   1.4   41  273-316   286-333 (379)
 91 1qgo_A CBIK protein, anaerobic  35.0      11 0.00046   16.8   1.1   19  274-292   179-197 (264)
 92 2b0v_A Nudix hydrolase; struct  34.8      13 0.00053   16.3   1.4   43   26-69      6-61  (153)
 93 3dku_A Putative phosphohydrola  33.8      17 0.00074   15.4   2.0   42   26-67      3-56  (153)
 94 1o5x_A TIM, triosephosphate is  33.6      11 0.00047   16.7   1.0   41  263-304   202-242 (248)
 95 1aw2_A Triosephosphate isomera  31.7      22 0.00092   14.7   2.2   42  262-304   204-246 (256)
 96 1wbh_A KHG/KDPG aldolase; lyas  31.3      17  0.0007   15.5   1.6   28  175-202    50-77  (214)
 97 1a53_A IGPS, indole-3-glycerol  31.0      18 0.00074   15.3   1.7   17  275-292   215-231 (247)
 98 2v5b_A Triosephosphate isomera  31.0      17 0.00071   15.5   1.6   40  263-303   198-237 (244)
 99 2bib_A CBPE, teichoic acid pho  30.9      19  0.0008   15.1   1.8   46   81-126   229-277 (547)
100 2i9e_A Triosephosphate isomera  30.8      17  0.0007   15.5   1.5   41  263-304   201-241 (259)
101 1mo0_A TIM, triosephosphate is  30.8      13 0.00055   16.2   1.0   41  263-304   221-261 (275)
102 1u9y_A RPPK;, ribose-phosphate  30.7      11 0.00044   16.8   0.5   42  272-315   218-265 (284)
103 2dp3_A Triosephosphate isomera  30.7      16 0.00067   15.6   1.4   41  263-304   207-247 (257)
104 1p90_A NAFY protein, hypotheti  29.8      22 0.00092   14.7   2.0   43   77-127    50-92  (145)
105 2qjo_A Bifunctional NMN adenyl  29.1      25   0.001   14.3   3.7   14  275-288   244-258 (341)
106 1r2r_A TIM, triosephosphate is  29.0      19  0.0008   15.1   1.5   41  263-304   202-242 (248)
107 3fpn_A Geobacillus stearotherm  28.7      25  0.0011   14.3   2.6   24  272-295    33-56  (119)
108 3dah_A Ribose-phosphate pyroph  28.7      17 0.00071   15.5   1.2   42  273-316   230-277 (319)
109 1b9b_A TIM, protein (triosepho  28.6     9.7 0.00041   17.1  -0.0   40  264-304   206-245 (255)
110 1zbf_A Ribonuclease H-related   28.4      21 0.00089   14.8   1.7   44   22-66     17-65  (142)
111 3clq_A Uncharacterized protein  27.7      20 0.00082   15.0   1.4   25   68-95     88-112 (421)
112 2xed_A Putative maleate isomer  27.3      18 0.00075   15.3   1.2   41   87-128   136-176 (273)
113 2vxn_A Triosephosphate isomera  27.1      15 0.00062   15.8   0.7   40  263-303   205-244 (251)
114 1ccw_A Protein (glutamate muta  26.9      27  0.0011   14.1   2.5   30   98-127     4-35  (137)
115 3ixl_A Amdase, arylmalonate de  26.9      19 0.00078   15.2   1.2   40   87-127   107-146 (240)
116 3lnp_A Amidohydrolase family p  26.6      26  0.0011   14.2   1.9   18   32-49     51-68  (468)
117 2jug_A TUBC protein; docking d  26.4      28  0.0012   14.0   2.5   21  274-295     6-26  (78)
118 3ff4_A Uncharacterized protein  26.3      19 0.00081   15.1   1.2   21  275-295    71-91  (122)
119 2wfb_A Putative uncharacterize  26.2      17 0.00072   15.4   0.9   23  204-226    13-35  (120)
120 2j27_A Triosephosphate isomera  25.8      18 0.00075   15.3   0.9   40  263-303   204-243 (250)
121 2ood_A BLR3880 protein; PSI-II  25.5      29  0.0012   13.9   2.7   15   32-46     36-50  (475)
122 3gvg_A Triosephosphate isomera  25.3      29  0.0012   13.9   2.3   41  263-304   231-272 (283)
123 1hc8_A Ribosomal protein L11;   25.1      20 0.00085   14.9   1.1   28   83-113     5-33  (76)
124 3kxq_A Triosephosphate isomera  25.0      27  0.0011   14.1   1.7   41  263-304   226-267 (275)
125 2btm_A TIM, protein (triosepho  24.7      30  0.0012   13.8   1.9   41  263-304   203-244 (252)
126 1tv8_A MOAA, molybdenum cofact  24.3      30  0.0013   13.8   2.1   44   84-127   107-163 (340)
127 1byr_A Protein (endonuclease);  24.0      14 0.00058   16.1   0.1   10   86-95     40-49  (155)
128 2q5c_A NTRC family transcripti  22.6      33  0.0014   13.5   6.7   23  179-201    41-63  (196)
129 1ney_A TIM, triosephosphate is  22.5      12 0.00048   16.6  -0.6   40  264-304   202-241 (247)
130 1wa3_A 2-keto-3-deoxy-6-phosph  22.5      27  0.0011   14.1   1.3   28  175-202    44-72  (205)
131 2gm2_A Conserved hypothetical   21.8      26  0.0011   14.1   1.2   13  276-288    81-93  (132)
132 3iq0_A Putative ribokinase II;  21.8      30  0.0013   13.8   1.4   42   88-131    43-85  (330)
133 3gip_A N-acyl-D-glutamate deac  21.3      35  0.0015   13.4   3.3   69   26-103    21-93  (480)
134 2ab1_A Hypothetical protein; H  21.0      35  0.0015   13.3   2.1   10  188-197    60-69  (122)
135 1wu7_A Histidyl-tRNA synthetas  20.5      17  0.0007   15.5  -0.1   12   84-95     82-93  (434)
136 3im9_A MCAT, MCT, malonyl COA-  20.5      36  0.0015   13.2   2.7   38  271-309   259-297 (316)
137 2z6i_A Trans-2-enoyl-ACP reduc  20.3      36  0.0015   13.2   2.0   38   86-128    78-115 (332)
138 2axw_A DRAD invasin; homodimer  20.1      33  0.0014   13.5   1.4   21  219-239    92-112 (134)

No 1  
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00  E-value=0  Score=857.87  Aligned_cols=355  Identities=34%  Similarity=0.527  Sum_probs=331.9

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC
Q ss_conf             87789999999999998708821888964799986998999984388769848999999730010698899905732115
Q gi|254780348|r    3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY   82 (364)
Q Consensus         3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~   82 (364)
                      ++++|++||++||++|++++|.|+|||+||||||+||+|||+|||+++|+||||++||++|+++++|||||||||||||+
T Consensus        10 ~~~~d~~~m~~Al~lA~~~~g~t~pNP~VG~viv~~g~ii~~G~h~~~G~~HAEv~Al~~a~~~~~gat~yvTLEPC~h~   89 (373)
T 2b3z_A           10 HGSMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHY   89 (373)
T ss_dssp             ---CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTTCEEEESSCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf             66399999999999998547888999989999998998999886899997579999999617002597799983687777


Q ss_pred             CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHH
Q ss_conf             752105556530134324663010121101243311001898896-2221012320012222011342220110102787
Q gi|254780348|r   83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD  161 (364)
Q Consensus        83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlD  161 (364)
                      |||||||++||++||||||||+.||||+|+|||+++|+++||+|+ +++++||.++|++||++++++||||++|+|+|+|
T Consensus        90 GktppC~~~ii~~gikrVv~~~~DPnp~v~g~g~~~L~~~gI~V~~g~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlD  169 (373)
T 2b3z_A           90 GKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLD  169 (373)
T ss_dssp             SSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETT
T ss_pred             CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf             88717889999709999999556578354885289998789989857218988876665556522589769999985687


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCC
Q ss_conf             72021136532222101356667642014403663122013454235443444434421576446689980221003444
Q gi|254780348|r  162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL  241 (364)
Q Consensus       162 GkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~  241 (364)
                      ||||..+|+|+||||++||.++|+||+++||||||++|++.|||+||||..+. .+||+|||+|+++++|.++++|++..
T Consensus       170 Gkia~~~g~s~wIT~~~sr~~vh~lRa~~DAIlvG~~Tv~~DnP~Lt~R~~~~-~~~P~riV~d~~l~~~~~~~i~~~~~  248 (373)
T 2b3z_A          170 GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV-TKQPVRVILDTVLSIPEDAKVICDQI  248 (373)
T ss_dssp             SBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTC-CSCCEEEEECTTCCCCTTCHHHHSCS
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCHHHEECCCC
T ss_conf             65333468740157777889998755525358982288445387022457775-67981898435554241233000478


Q ss_pred             CCEEEEECCCCCCCHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEE
Q ss_conf             670798546554210110022322222333--222788999986079969998123899999997889889999960743
Q gi|254780348|r  242 LAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV  319 (364)
Q Consensus       242 ~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~--~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~i  319 (364)
                      ...+++++.+.+..+...+...++.++...  ..++.++|+.|+++||++||||||++|+++||+++||||+++|+||++
T Consensus       249 ~~~~i~~~~~~~~~~~~~l~~~~~~vi~~~~~~l~l~~il~~L~~~Gi~~lLVEGG~~L~~sfL~~~LvDEl~l~iAPki  328 (373)
T 2b3z_A          249 APTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKL  328 (373)
T ss_dssp             SCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHTCCSEEEEEEESBC
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCHHEEEEEECCCE
T ss_conf             87035513665467789888618714431001345799999987759888999057999999997776108876887831


Q ss_pred             ECCCCCCCCCCCCCC-----CCCCEEEEEEEECCCEEEEEEECC
Q ss_conf             268875233345454-----446405446886793699995074
Q gi|254780348|r  320 IGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN  358 (364)
Q Consensus       320 lG~~g~~s~~~~~~~-----~~~~~l~~~~~ig~Dv~~~y~~k~  358 (364)
                      +|+++.++++.....     ...|++++++++|+|++++|++..
T Consensus       329 lGg~~~~~~~~~~~~~~l~~a~~l~l~~~~~~G~Di~i~~rP~k  372 (373)
T 2b3z_A          329 IGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPTK  372 (373)
T ss_dssp             CCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEEC-
T ss_pred             ECCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC
T ss_conf             07888777557656358756666666479998985999999787


No 2  
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00  E-value=0  Score=825.12  Aligned_cols=356  Identities=36%  Similarity=0.517  Sum_probs=317.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC
Q ss_conf             96877899999999999987088218889647999869989999843887698489999997300106988999057321
Q gi|254780348|r    1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS   80 (364)
Q Consensus         1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~   80 (364)
                      |-|..+|++||++|+++|++++|.|+|||+||||||+||+|||+|||+.+|+||||++||++|+++++|+||||||||||
T Consensus        24 ~~~~~~d~~~m~~a~~~a~~~~g~t~pnp~Vg~viv~~~~ii~~g~~~~~g~~HAE~~a~~~~~~~~~~~~~yvtLEPC~  103 (402)
T 2g6v_A           24 LYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCS  103 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGGGGSSCEEESSCCC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCHHCCCCEEEEECCCCC
T ss_conf             32010899999999999985689889999889999989989999968999986999999997253217988999778865


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
Q ss_conf             15752105556530134324663010121101243311001898896-22210123200122220113422201101027
Q gi|254780348|r   81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS  159 (364)
Q Consensus        81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~S  159 (364)
                      |+||||||+++|+++||||||||+.||||+|+|||+++||++||+|+ +++++||.+||++||++++++||||++|+|+|
T Consensus       104 h~GkTppC~~~i~~~gikrVv~~~~DPnp~v~GkGi~~Lr~aGI~V~~g~l~~e~~~ln~~f~~~~~~~rP~V~lK~A~S  183 (402)
T 2g6v_A          104 HHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGAS  183 (402)
T ss_dssp             ------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTTTHHHHHTHHHHHHHHSSSCEEEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             68998369999997246689995788981106963354631796896560455567788999999744571799999522


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCC-----------CCCCEEEEECCCC
Q ss_conf             87720211365322221013566676420144036631220134542354434444-----------3442157644668
Q gi|254780348|r  160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHF  228 (364)
Q Consensus       160 lDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~-----------~~~P~riVld~~l  228 (364)
                      +|||||..+|+++||||++||.++|+||+++||||||++|++.|||+||||..+..           .+||.|||+|+++
T Consensus       184 lDGkIa~~~g~s~wIT~~~sr~~vH~lRa~~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~~~~~~~~~~~P~riVld~~~  263 (402)
T 2g6v_A          184 LDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN  263 (402)
T ss_dssp             TTCBBCC---CCSCSSCHHHHHHHHHHHHHCSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSSCCGGGCCCCEEEEECTTC
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             77764445787443657889999999886200043267843123883335036630101112554456898415667888


Q ss_pred             CCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC
Q ss_conf             99802210034446707985465542101100223222223332227889999860799699981238999999978898
Q gi|254780348|r  229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV  308 (364)
Q Consensus       229 ~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~Lv  308 (364)
                      ++++++++|+..  .++|++++..............+.....+..||+++|+.|+++||++||||||++|+++||+++||
T Consensus       264 rl~~~~~if~~~--~~~ii~~s~~~~~~~~~~~~~~~~~~~~~~ldl~~iL~~L~~~Gi~~LLVEGG~~L~~sfL~~~Lv  341 (402)
T 2g6v_A          264 RVTPVHRIVQQP--GETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLV  341 (402)
T ss_dssp             CCCTTSGGGSSS--SCEEEEESSCCCSCCCTTEEEEECCEETTEECHHHHHHHHHHTTCCEEEECCCHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHCCC--CCEEEEECCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCC
T ss_conf             998467631378--847997240445665202203686324774049999999987699999994279999999876981


Q ss_pred             CEEEEEEECEEECCCCCCCCCC----CCCCCCCCEEEEEEEECCCEEEEEEECC
Q ss_conf             8999996074326887523334----5454446405446886793699995074
Q gi|254780348|r  309 DSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN  358 (364)
Q Consensus       309 DEl~ifiaP~ilG~~g~~s~~~----~~~~~~~~~l~~~~~ig~Dv~~~y~~k~  358 (364)
                      ||+++|+||+++|+++.+.+..    .+....+|++++++++|+|++++|++-.
T Consensus       342 DEl~i~iAPkilG~~~~~~~~~~~~~~l~da~~l~l~~~~~lG~Di~l~yvp~~  395 (402)
T 2g6v_A          342 DELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGAS  395 (402)
T ss_dssp             CEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEEEETTEEEEEEECC-
T ss_pred             CEEEEEECCHHHCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC
T ss_conf             399989877644899977666667017756537767579998984999999655


No 3  
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00  E-value=0  Score=778.91  Aligned_cols=343  Identities=35%  Similarity=0.534  Sum_probs=306.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHH---CCHHCCCEEEEECCCCC
Q ss_conf             778999999999999870882188896479998699899998438876984899999973---00106988999057321
Q gi|254780348|r    4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCS   80 (364)
Q Consensus         4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~---~~~~~~atlyvtLEPC~   80 (364)
                      +.|+++||++|+++|+++.|.|+|||+||||||+||+|||+|||+.+|+||||++||++|   +++++|+||||||||||
T Consensus        11 ~~~~~~~m~~A~~~A~~~~g~t~pNP~VG~viv~~g~ii~~g~~~~~g~~HAE~~ai~~a~~~~~~~~g~tlyvTLEPC~   90 (360)
T 2hxv_A           11 HHMYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCD   90 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             57999999999999975177768999889999989989999838999998999999999876274668978999878843


Q ss_pred             CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC
Q ss_conf             15752105556530134324663010121101243311001898896-22210123200122220113422201101027
Q gi|254780348|r   81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS  159 (364)
Q Consensus        81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~S  159 (364)
                      |+||||||+++||++||+|||||+.||||+ +|+|+++|+++||+|. ++++++|.++|++||++++++||||++|+|+|
T Consensus        91 h~GktppC~~~ii~~gi~~Vv~~~~Dpnp~-~g~g~~~L~~aGI~V~~g~~~~~~~~ln~~f~~~~~~~rP~V~~K~A~S  169 (360)
T 2hxv_A           91 HHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYAST  169 (360)
T ss_dssp             SCSSSCCHHHHHHHHTCCEEEEEECCCCGG-GCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEEECCCCC-CCCCEEHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEEEEC
T ss_conf             557776488899972899899971437623-5775201104683899800244332344213445425895399987675


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCC
Q ss_conf             87720211365322221013566676420144036631220134542354434444344215764466899802210034
Q gi|254780348|r  160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT  239 (364)
Q Consensus       160 lDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~  239 (364)
                      +|||||..+|+|+|||++.+| .+|+||+++||||||++|++.|||+||||+++  .++|.|||+|++++++.++..+..
T Consensus       170 lDGkia~~~g~s~~it~~~~r-~~h~lRa~~DAIlvG~~Tv~~DnP~Lt~R~~~--~~~P~rvIld~~~~l~~~~~~~~~  246 (360)
T 2hxv_A          170 LDGKIADHRGDSKWITDKLRF-KVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFE  246 (360)
T ss_dssp             TTSEEECTTSCCTTSCSTTHH-HHHHHHHHSSEEEEEHHHHHHHCCCCCCCSTT--SCCCEEEEECTTCTTTTCCCGGGS
T ss_pred             CCCCEECCCCCCEECCHHHHH-HHHHHHHHCCCEEECCCCHHHCCCCCEEECCC--CCCCCEEECCCCCCCCHHHHHEEC
T ss_conf             998734467873551310035-78999986586043367343208610145557--878944755755667745540230


Q ss_pred             CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEE
Q ss_conf             44670798546554210110022322222333222788999986079969998123899999997889889999960743
Q gi|254780348|r  240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV  319 (364)
Q Consensus       240 ~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~i  319 (364)
                      . ..+++|++++.+..+...+..      .....|++.+|+.|+++||++||||||++|+++||++  +||+++|+||++
T Consensus       247 ~-~~~~ii~t~~~~~~~~~~~~~------~~~~~dl~~iL~~L~~~Gi~slLVEGG~~L~~sfl~~--~Dei~~f~APki  317 (360)
T 2hxv_A          247 E-NARVIVFTESEEAEYPPHVEK------ALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDH--ADVVFGFYSTKI  317 (360)
T ss_dssp             S-SSCEEEEESCSSCCCCTTSEE------EECCCCHHHHHHHHHHTTCCEEEECCCHHHHHHHGGG--CSEEEEEEESCC
T ss_pred             C-CCCEEEEECCCCCCCCHHHHH------HCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH--CCEEEEEECCHH
T ss_conf             4-773158842531013046665------0245899999999986799899992369999999985--999999988777


Q ss_pred             ECCCCCCCCC---CCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCC
Q ss_conf             2688752333---4545444640544688679369999507431257
Q gi|254780348|r  320 IGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE  363 (364)
Q Consensus       320 lG~~g~~s~~---~~~~~~~~~~l~~~~~ig~Dv~~~y~~k~~c~~~  363 (364)
                      ||+ |.+.+.   .......+|++.+++++|+|++++|++   |+||
T Consensus       318 lG~-G~~~~~~~~~~l~~~~~l~l~~~~~~G~Di~i~~rP---c~~~  360 (360)
T 2hxv_A          318 FGK-GLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP---CSRE  360 (360)
T ss_dssp             CSS-SEETTTTCCCCTTSCCCEEEEEEEEETTEEEEEEEE---C---
T ss_pred             HCC-CCCCCCCCHHHHHHCCCCEEEEEEEECCEEEEEEEE---CCCC
T ss_conf             569-853346421111215366887899999989999996---8999


No 4  
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics; 2.30A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=100.00  E-value=0  Score=332.89  Aligned_cols=223  Identities=15%  Similarity=0.135  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCC-
Q ss_conf             3200122220113422201101027877202113653222210135666764201440366312201345423544344-
Q gi|254780348|r  135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG-  213 (364)
Q Consensus       135 ~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~-  213 (364)
                      ...+.+|+.+...+||||++|+|+|+|||+ ..+|.|+||||+.+|.++|+||+++||||||++|++.|||+|++|..+ 
T Consensus        19 ~~~~~~~~~~~~~~~P~v~~~~a~SlDGka-~~~G~s~~is~~~dr~~~h~LRa~~DaIlvG~~Tv~~D~p~l~~r~~~~   97 (270)
T 2p4g_A           19 EQIVYGALPLTTINEPECRAIAITSINGSA-TLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGI   97 (270)
T ss_dssp             HHHHHSSCCTHHHHCCEEEEEEEEETTSBS-CBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCHHH
T ss_pred             HHHHCCCCCCCCCCCCEEEEEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHH
T ss_conf             676404247777999629999998475664-7899776879999999999999879989988130114476543246566


Q ss_pred             -------CCCCCCEEEEECCCCCCCHHHHHCCCCCC---CEEEEECCCCCCC-----HHHHCCCCCCCCCCCC--CCCHH
Q ss_conf             -------44344215764466899802210034446---7079854655421-----0110022322222333--22278
Q gi|254780348|r  214 -------LQEHSPMRIILDPHFKLSLDSKIIKTALL---APVIIVTENDDPV-----LALAFRKKNINIIYCD--CRDLK  276 (364)
Q Consensus       214 -------~~~~~P~riVld~~l~i~~~~~l~~~~~~---~~~ii~~~~~~~~-----~~~~~~~~~v~vi~~~--~~dl~  276 (364)
                             ...++|.+||+|+++++|+++++|+....   .++++++.+.++.     +...+...+++++..+  ..||+
T Consensus        98 ~~~r~~~g~~~~P~~vVld~~~~~~~~~~l~~~~~~~~~~~iv~t~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~  177 (270)
T 2p4g_A           98 KNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLK  177 (270)
T ss_dssp             HHHHHHTTCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHH
T ss_pred             HHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHH
T ss_conf             55544216578996898257778885322213677774137998257654235567888887524726750788887999


Q ss_pred             HHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCC--CCCCCCCEEEEEEEECCC-EEEE
Q ss_conf             8999986079969998123899999997889889999960743268875233345--454446405446886793-6999
Q gi|254780348|r  277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCVRRDYFGSD-VCLE  353 (364)
Q Consensus       277 ~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~--~~~~~~~~l~~~~~ig~D-v~~~  353 (364)
                      .+|+.|+++|+++||||||++|+++||+++||||+++|+||+++|+++.+.+...  ......+++.......++ ++++
T Consensus       178 ~~l~~L~~~Gi~~vLVEGG~~L~~s~l~~gLiDEl~l~iaP~llG~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~lflR  257 (270)
T 2p4g_A          178 IAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLSSSPNGLIFSR  257 (270)
T ss_dssp             HHHHHHHTTTCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEEECTTCCEEEE
T ss_pred             HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEE
T ss_conf             99999875698727996719999999872767389999878876799866656777555564634689999249979999


Q ss_pred             EEECC
Q ss_conf             95074
Q gi|254780348|r  354 YIGKN  358 (364)
Q Consensus       354 y~~k~  358 (364)
                      |++..
T Consensus       258 Yr~~r  262 (270)
T 2p4g_A          258 YKVIR  262 (270)
T ss_dssp             EEECC
T ss_pred             EEECC
T ss_conf             87825


No 5  
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=100.00  E-value=1.4e-45  Score=325.34  Aligned_cols=209  Identities=27%  Similarity=0.452  Sum_probs=176.9

Q ss_pred             CCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             34222011010278772021136532222101356667642014403663122013454235443444434421576446
Q gi|254780348|r  147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP  226 (364)
Q Consensus       147 ~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~  226 (364)
                      .+||||++|+|||+|||||..+|.+ ||||++++.++|.||+++||||+|++|++.|||+|++|..+ ..++|.+||+|+
T Consensus         1 ~krP~V~~~~a~SlDG~ia~~~g~~-~is~~~~~~~~~~lR~~~dail~G~~T~~~d~p~l~~r~~~-~~~~~~~vV~d~   78 (219)
T 2azn_A            1 EKKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIK-SDRNPVRIVVDS   78 (219)
T ss_dssp             CCCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSC-CSSCCEEEEECT
T ss_pred             CCCCEEEEEEEECCCCCEECCCCCC-CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCEEEEEC
T ss_conf             9988899998886867888999987-75897999999999986497999557256658742031455-457981899628


Q ss_pred             CCCCCHHHHHCCCCCCCEEEEECCCCCC---CHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf             6899802210034446707985465542---10110022322222333--222788999986079969998123899999
Q gi|254780348|r  227 HFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHS  301 (364)
Q Consensus       227 ~l~i~~~~~l~~~~~~~~~ii~~~~~~~---~~~~~~~~~~v~vi~~~--~~dl~~iL~~L~~~gi~~iLVEGG~~l~~s  301 (364)
                      +++++.++++|+..... +++++.....   .+.......++.++..+  ..|++++++.|+++|+++||||||++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~  157 (219)
T 2azn_A           79 KLRVPLNARVLNKDAKT-IIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWG  157 (219)
T ss_dssp             TCCCCTTCGGGSTTSCE-EEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHH
T ss_pred             CCCCCHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             98778435665126864-89951554313488887630673799732489879999999998779978998010999999


Q ss_pred             HHHCCCCCEEEEEEECEEECCCCCCCCCCCCC-----CCCCCEEEEEEEECCCEEEEEEECC
Q ss_conf             99788988999996074326887523334545-----4446405446886793699995074
Q gi|254780348|r  302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEYIGKN  358 (364)
Q Consensus       302 fl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~-----~~~~~~l~~~~~ig~Dv~~~y~~k~  358 (364)
                      ||++|||||+++|+||+++|+++.+++++...     ...+|++.+++++|+|++++|+.|+
T Consensus       158 fl~~gliDEl~l~iaP~llG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~vkk  219 (219)
T 2azn_A          158 MFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK  219 (219)
T ss_dssp             HHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEEETTEEEEEEEECC
T ss_pred             HHHHHHCCEEEEEECCEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC
T ss_conf             98876347899998663457988766447778568646557877279998999999999739


No 6  
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2
Probab=100.00  E-value=4.3e-39  Score=282.64  Aligned_cols=148  Identities=28%  Similarity=0.402  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCC----CCHHHHHHHHHHCCH-----HCCCEEEEE
Q ss_conf             78999999999999870882188896479998699899998438876----984899999973001-----069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE-----ARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G----~~HAE~~al~~~~~~-----~~~atlyvt   75 (364)
                      -.|+.||++||++|+++  .+.|||+||||||+||+||++|+|+..|    ..|||++|++.+...     +.++++|+|
T Consensus         7 ~~h~~~M~~Ai~~A~~a--~~~~~~pVGaVIV~~g~Ii~~g~n~~~~~~~~~~HAE~~a~~~a~~~~~~~~l~~~~ly~t   84 (168)
T 1z3a_A            7 FSHEYWMRHALTLAKRA--WDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVT   84 (168)
T ss_dssp             TSHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHH--CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCEECCC
T ss_conf             78999999999999985--4189998999999899899997301145676527899987776654145627547402216


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC----CEEE-ECCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             573211575210555653013432466301012110124331100189----8896-22210123200122220113422
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVD-RMMESEGKIFLHAYLTRQVEKRS  150 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G----I~V~-~~~~~~~~~ln~~f~~~~~~~rP  150 (364)
                      ||||      |||+.+|+++||+|||||..|||+.+.|+|.+.|+++|    ++|. |++++||.+|++.|| .++.+||
T Consensus        85 ~ePC------~mC~~ai~~agI~rVvyg~~dp~~~~~g~~~~~~~~~~~~~~~ev~~gvl~~e~~~l~~~Ff-~~~r~~p  157 (168)
T 1z3a_A           85 LEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF-RMRRQEI  157 (168)
T ss_dssp             ECCC------HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHH-HHHHTTC
T ss_pred             CCCC------CCHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHH-HHHHCCC
T ss_conf             9997------33898995368878999867889887631778877346799978991839999999999999-9996796


Q ss_pred             HHHHHHCCCHH
Q ss_conf             20110102787
Q gi|254780348|r  151 HITLKIAVSQD  161 (364)
Q Consensus       151 ~V~lK~A~SlD  161 (364)
                      ||++|+|+|+|
T Consensus       158 ~~~~K~a~s~d  168 (168)
T 1z3a_A          158 KAQKKAQSSTD  168 (168)
T ss_dssp             C----------
T ss_pred             CCHHHHHHCCC
T ss_conf             41667974789


No 7  
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00  E-value=2.1e-37  Score=271.27  Aligned_cols=155  Identities=27%  Similarity=0.400  Sum_probs=140.9

Q ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC----CCCHHHHHHHHHHCC-----HHCCC
Q ss_conf             9687-7899999999999987088218889647999869989999843887----698489999997300-----10698
Q gi|254780348|r    1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE-----EARGA   70 (364)
Q Consensus         1 m~~~-~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~----G~~HAE~~al~~~~~-----~~~~a   70 (364)
                      |++| +.|++||++|+++|+++  .+.+||+||||||+||+|||+|||...    +..|||++|+++|..     .+.|+
T Consensus         9 m~~~~~~d~~fM~~Al~~A~~a--~~~g~~PVGaVIV~~g~IIa~g~N~~~~~~~~~~HAe~~ai~~a~~~~~~~~l~~~   86 (179)
T 2nx8_A            9 MPYSLEEQTYFMQEALKESEKS--LQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDT   86 (179)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             5678178999999999999986--03699988999998999999861513058997232999889999986088737676


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC----CCEEE-ECCCCHHHHHHHHHHHHC
Q ss_conf             8999057321157521055565301343246630101211012433110018----98896-222101232001222201
Q gi|254780348|r   71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK----GIIVD-RMMESEGKIFLHAYLTRQ  145 (364)
Q Consensus        71 tlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~----GI~V~-~~~~~~~~~ln~~f~~~~  145 (364)
                      |+|||||||      |.|+.+|+.+||+|||+|..||++.+.|.+..+|++.    +++|. |++++||..|++.||.+.
T Consensus        87 ~lyvTlEPC------~mC~~ai~~a~I~rVvy~~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~e~~~Llk~Ff~~~  160 (179)
T 2nx8_A           87 TLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQG  160 (179)
T ss_dssp             EEEEEECCB------HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCC------HHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf             244576866------79999999828684999537998774563888754131289978991868999999999999999


Q ss_pred             CCCCCHHHHHHCCCHHHH
Q ss_conf             134222011010278772
Q gi|254780348|r  146 VEKRSHITLKIAVSQDNM  163 (364)
Q Consensus       146 ~~~rP~V~lK~A~SlDGk  163 (364)
                      ..++|+++.|+|+|.|++
T Consensus       161 r~k~~~~~~~~~~~~d~~  178 (179)
T 2nx8_A          161 RERKKIAKHLIKEQSDPF  178 (179)
T ss_dssp             HHHHHHHHHHHHC-----
T ss_pred             HHCCCCHHHHHHHHCCCC
T ss_conf             860970025688746999


No 8  
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00  E-value=1.6e-34  Score=251.79  Aligned_cols=139  Identities=31%  Similarity=0.436  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf             78999999999999870882188896479998699899998438----87698489999997300-----1069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt   75 (364)
                      +.|++||++||++|+++.  +.|||+||||||++|++|+.|+++    ..+.+|||++|+.++..     ...++|+|+|
T Consensus         5 ~~D~~fM~~Al~~A~~a~--~~g~~pVGaViV~~~~ii~~g~~~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tly~t   82 (159)
T 2b3j_A            5 TNDIYFMTLAIEEAKKAA--QLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT   82 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHC--CCCCCCEEEEEEECCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             679999999999999854--069998999998699389876231005886335899999999999838877788557403


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             5732115752105556530134324663010121101243311001898----896-22210123200122220113422
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAYLTRQVEKRS  150 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f~~~~~~~rP  150 (364)
                      ||||.      +|+.+|+++||+|||||+.|||+.++|+|..+|+++||    +|. |++++||.+|++.||++.+.++|
T Consensus        83 ~EPC~------mC~~ai~~agI~~Vv~g~~dp~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~Ll~~ff~~~R~~~~  156 (159)
T 2b3j_A           83 LEPCV------MCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKK  156 (159)
T ss_dssp             ECCCH------HHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCH------HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             79968------999999996999899997489987556388998726999998798284999999999999999985048


Q ss_pred             H
Q ss_conf             2
Q gi|254780348|r  151 H  151 (364)
Q Consensus       151 ~  151 (364)
                      -
T Consensus       157 ~  157 (159)
T 2b3j_A          157 S  157 (159)
T ss_dssp             -
T ss_pred             C
T ss_conf             9


No 9  
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00  E-value=1.1e-32  Score=239.43  Aligned_cols=135  Identities=23%  Similarity=0.329  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC----CCCCHHHHHHHHHHCC-----HHCCCEEEEEC
Q ss_conf             89999999999998708821888964799986998999984388----7698489999997300-----10698899905
Q gi|254780348|r    6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTL   76 (364)
Q Consensus         6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~----~G~~HAE~~al~~~~~-----~~~~atlyvtL   76 (364)
                      .|++||++||++|+++  .+.++|+||||||+||+||++|++..    .+.+|||++|+++|..     .++|+|+||||
T Consensus        22 ~~e~fM~~Al~~A~~a--~~~g~~PVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tlY~Tl   99 (171)
T 1wwr_A           22 GKEYFLKVALREAKRA--FEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTL   99 (171)
T ss_dssp             SHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESS
T ss_pred             CHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             9999999999999986--13699989999998996986533664469997314999999999976086556786885315


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC----CEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf             73211575210555653013432466301012110124331100189----8896222101232001222201134
Q gi|254780348|r   77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEK  148 (364)
Q Consensus        77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G----I~V~~~~~~~~~~ln~~f~~~~~~~  148 (364)
                      |||.+      |+.+|+++||+|||||+.||++.+.|++++.|++.+    ++|.+++.+||.+|++.||...+++
T Consensus       100 EPC~m------C~~ai~~sgI~rVvyg~~D~~~g~~~~~~~~l~~~~~~~~~~v~~g~~eE~~~Ll~~FF~~~R~~  169 (171)
T 1wwr_A          100 EPCIM------CSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKKLRNN  169 (171)
T ss_dssp             CCBHH------HHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred             CCCHH------HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf             87888------99999985888599986479987434488887643248998899734999999999999998620


No 10 
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.97  E-value=2e-32  Score=237.65  Aligned_cols=210  Identities=14%  Similarity=0.053  Sum_probs=152.5

Q ss_pred             HHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCC-----C
Q ss_conf             20113422201101027877202113653222210135666764201440366312201345423544344443-----4
Q gi|254780348|r  143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----H  217 (364)
Q Consensus       143 ~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~-----~  217 (364)
                      ..+..+.|+|++|+|+|+|||||..++.++|+|+++++.++|.+|+++|+|++|..|+..|+|.+++|......     .
T Consensus        14 ~~~~~~M~~V~~~~a~SLDG~Ia~~~g~~~~l~~~~~~~~~~~~r~~~d~il~g~~T~~~~~~~~~~~~~~~~~~~~~~~   93 (231)
T 3kgy_A           14 NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTF   93 (231)
T ss_dssp             CTTGGGSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHH
T ss_pred             HHHHCCCHHHEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf             89987886774888996788404989983565787899999888763698996874144258756556664455514664


Q ss_pred             CCEEEEECCCCCCCHHHHHCCCCC--CCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf             421576446689980221003444--670798546554210110022322222333222788999986079969998123
Q gi|254780348|r  218 SPMRIILDPHFKLSLDSKIIKTAL--LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG  295 (364)
Q Consensus       218 ~P~riVld~~l~i~~~~~l~~~~~--~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG  295 (364)
                      +|..++++.+..++.....+....  ..+.+++++.....   .....+..++.........+.+.+.+.|+++|+||||
T Consensus        94 ~~~~~vv~g~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~---~~~~~~~~~~~~~~d~~~~l~~l~~~~G~~~i~veGG  170 (231)
T 3kgy_A           94 ERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNP---WVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGG  170 (231)
T ss_dssp             HTEEEEEEEHHHHHHHHHHSCSSCSCCSEEEEECSSCCCC---EEETTTEEEEEECSCHHHHHHHHHHHHTTSEEEEEEC
T ss_pred             CCCCCEECCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCC---HHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECH
T ss_conf             6778050475323156762777775332036530244430---1203786799917986999999998679983999716


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEE
Q ss_conf             8999999978898899999607432688752333454544464054468867936999950
Q gi|254780348|r  296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG  356 (364)
Q Consensus       296 ~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~  356 (364)
                      ++|+++||++|||||+++|++|+++|+ |.+.|-........+.+.+...-+..+.++|+|
T Consensus       171 g~L~~sfl~agLvDEl~l~iaP~llG~-G~~lf~~~~~~~~~~~l~~~~~~~g~v~LrY~R  230 (231)
T 3kgy_A          171 ANVIQQYLNLGLVDELEIALIPVIFGG-GRRLFENLHEPLPQFRIDRVLASPTATHLRYVR  230 (231)
T ss_dssp             HHHHHHHHHTTCCSEEEEEEESCCCSS-SEESSCSCCSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred             HHHHHHHHHCCCCCEEEEEEECEEECC-CCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
T ss_conf             999998855895879999990479779-851789998541013755898689849999997


No 11 
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97  E-value=6.5e-31  Score=227.45  Aligned_cols=129  Identities=32%  Similarity=0.402  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf             78999999999999870882188896479998699899998438----87698489999997300-----1069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt   75 (364)
                      +.|++||++||++|+++.  ..++||||||||+||+||++|+|.    ..+..|||++|+++|..     ...++|+|+|
T Consensus         2 ~~~~~fM~~Al~~A~~a~--~~g~~PvGavIV~~g~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~t   79 (144)
T 2a8n_A            2 AERTHFMELALVEARSAG--ERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT   79 (144)
T ss_dssp             CCHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHH--CCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf             606999999999999863--069998899999899999984203102688640189999999999718873476333256


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHH
Q ss_conf             5732115752105556530134324663010121101243311001898----896-22210123200122
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAY  141 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f  141 (364)
                      +|||      |+|+.+|+++||+|||||+.||++.+.|++++.+.+.++    +|. |++++||.+|++.|
T Consensus        80 ~EPC------~mC~~ai~~~gI~rVvyg~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~E~~~L~~~F  144 (144)
T 2a8n_A           80 LEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF  144 (144)
T ss_dssp             ECCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred             CCCC------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCC
T ss_conf             7898------7899999996999899997089977556188987604799998899486899999997479


No 12 
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.97  E-value=3e-30  Score=222.99  Aligned_cols=131  Identities=27%  Similarity=0.430  Sum_probs=114.4

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE--ECCEEEEEEECC----CCCCCHHHHHHHHHHC----CHHCCCEE
Q ss_conf             8778999999999999870882188896479998--699899998438----8769848999999730----01069889
Q gi|254780348|r    3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPHAEVQALEEAG----EEARGATA   72 (364)
Q Consensus         3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv--~~g~ii~~g~~~----~~G~~HAE~~al~~~~----~~~~~atl   72 (364)
                      .|+.|++||++|+++|+++  ....++|||||||  ++|+||++||+.    ..+.+|||++||++|.    ...+|+||
T Consensus        10 ~~~~D~~~M~~A~~~A~~a--~~~g~~PvGaviV~~~~g~Ii~~g~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~l~~~tl   87 (161)
T 1p6o_A           10 ASKWDQKGMDIAYEEAALG--YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTL   87 (161)
T ss_dssp             CCTTHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEE
T ss_pred             CCHHHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCCCEEEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             8799999999999999999--87599998999998599969998613000479997579899998764128976778368


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             990573211575210555653013432466301012110124331100189889622210123200122220
Q gi|254780348|r   73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR  144 (364)
Q Consensus        73 yvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~  144 (364)
                      |||||||      |+|+.+|+.+||+|||||..|   ...|.|.+.|+.+|++|.++++++|.+|++.||..
T Consensus        88 yvTlEPC------~mC~~ai~~~gI~rVv~G~~~---~~~~~~~~~l~~~~~~v~~v~~eec~~Ll~~FF~~  150 (161)
T 1p6o_A           88 YTTLSPC------DMCTGAIIMYGIPRCVVGENV---NFKSKGEKYLQTRGHEVVVVDDERCKKIMKQFIDE  150 (161)
T ss_dssp             EEEECCC------HHHHHHHHHHTCCEEEEEESS---SCCCTHHHHHHHTTCEEEECCCHHHHHHHHHHHHH
T ss_pred             EECCCCC------HHHHHHHHHHCCCEEEEECCC---CCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHH
T ss_conf             8526887------999999999693989993899---87873499998689779863899999999999998


No 13 
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens}
Probab=99.96  E-value=1.1e-29  Score=219.20  Aligned_cols=143  Identities=22%  Similarity=0.303  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHC-----------CHHCC
Q ss_conf             78999999999999870882188896479998699899998438----8769848999999730-----------01069
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----------EEARG   69 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~-----------~~~~~   69 (364)
                      ++|++||+.||++|+++...  .+.+||||||+||+||++||..    ..+..|||++||+.+.           ..+.|
T Consensus        24 ~~de~~M~~Al~lA~~a~~~--g~~PvGaViV~~g~IIa~g~N~~~~~~d~t~HaEi~ai~~a~~~~~~~~~~~~~~l~~  101 (189)
T 3dh1_A           24 EETEKWMEEAMHMAKEALEN--TEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEH  101 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             78999999999999987416--9998899999899899986144555788776489999999999998741125432578


Q ss_pred             CEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC------CCCEEE-ECCCCHHHHHHHHHH
Q ss_conf             8899905732115752105556530134324663010121101243311001------898896-222101232001222
Q gi|254780348|r   70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ------KGIIVD-RMMESEGKIFLHAYL  142 (364)
Q Consensus        70 atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~------~GI~V~-~~~~~~~~~ln~~f~  142 (364)
                      +|||||||||      |.|+.+|+++||+|||||+.||+....|..+.....      .+++|. |++++||..|++.||
T Consensus       102 ~tlYtT~EPC------~mCa~ai~~agI~rVvyg~~d~~~g~~g~~~~l~~~~~~~~~~~~~v~~gvl~ee~~~llk~Ff  175 (189)
T 3dh1_A          102 TVLYVTVEPC------IMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFY  175 (189)
T ss_dssp             EEEEEEECCB------HHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHT
T ss_pred             CEEEECCCCH------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH
T ss_conf             5468524881------9999999995998799997189988756247877654111389908986958999999999999


Q ss_pred             HHCCCCCCHHHHH
Q ss_conf             2011342220110
Q gi|254780348|r  143 TRQVEKRSHITLK  155 (364)
Q Consensus       143 ~~~~~~rP~V~lK  155 (364)
                      .....++|..-.|
T Consensus       176 ~~~r~~~p~~k~k  188 (189)
T 3dh1_A          176 KQENPNAPKSKVR  188 (189)
T ss_dssp             CC-----------
T ss_pred             HHHCCCCCCCCCC
T ss_conf             9866799977768


No 14 
>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis}
Probab=99.96  E-value=2.1e-30  Score=223.97  Aligned_cols=184  Identities=18%  Similarity=0.159  Sum_probs=141.8

Q ss_pred             HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             01134222011010278772021136532222101356667642014403663122013454235443444434421576
Q gi|254780348|r  144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII  223 (364)
Q Consensus       144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riV  223 (364)
                      ...+.|| |++|+|+|+|||||..+|.+.|+|++.++. .|.+|+++||||+|++|+..|+|.++.|... ...+|.+++
T Consensus         4 ~~~~~Rk-vi~~~A~SlDG~ia~~~g~~~w~~~~~~~~-~~~~~~~~dail~G~~T~~~~~~~~~~~~~~-~~~~~~~~~   80 (189)
T 2gd9_A            4 NNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMG-FTDFLNQIDTILYGRKSFDLWGQYIPKNEDP-DTEKELWKL   80 (189)
T ss_dssp             CCCCCCC-EEEEEEECTTSEEECTTSCCTTCCCCTTSC-HHHHHHTEEEEEEEHHHHHHHTTC-----------CCHHHH
T ss_pred             CCCCCCE-EEEEEEEECCCCEECCCCCCCCCCCHHHHH-HHHHHHHCCCEEECCCEEEEECCCCCCCCCC-CCCCCCCEE
T ss_conf             8898681-999999908988799999847758768889-9999986797875672799765757637677-656872212


Q ss_pred             ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             44668998022100344467079854655421011002232222233322278899998607996999812389999999
Q gi|254780348|r  224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI  303 (364)
Q Consensus       224 ld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl  303 (364)
                      +++.                +.++++.......      ..   ...-..|+.++++.+.+.++++|++|||++++++|+
T Consensus        81 ~~~~----------------~~~v~s~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~~~v~veGG~~l~~~~l  135 (189)
T 2gd9_A           81 VHSK----------------KKYVFSRTQNEID------NQ---AIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFI  135 (189)
T ss_dssp             HHHS----------------EEEEECCEEETTT------TE---EECCHHHHHHHHHHHHHSCCSEEEEEECHHHHHHHH
T ss_pred             CCCC----------------CEEEEECCCCCCC------CC---EEEEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf             2677----------------4141002235566------64---389846889999999974897199967616778776


Q ss_pred             HCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEEC
Q ss_conf             7889889999960743268875233345454446405446886793-69999507
Q gi|254780348|r  304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK  357 (364)
Q Consensus       304 ~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k  357 (364)
                      +++||||+++|++|+++|+ |.+.+ ........|++.+++.++++ ++++|.++
T Consensus       136 ~~glvDel~l~i~P~ilG~-G~~~f-~~~~~~~~l~L~~~~~~~~g~v~l~Y~~~  188 (189)
T 2gd9_A          136 NLGLVDEFRLSIHPVVLGE-GKPLF-IDVKQRINLKMVNTRTFSSGVVQIVYHWN  188 (189)
T ss_dssp             HTTCCCEEEEEECSEECSS-SEESS-CSCCSCEECEEEEEEECTTSCEEEEEEC-
T ss_pred             HCCCCCEEEEEEECEEECC-CCCCC-CCCCCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf             4673427899982679889-72267-77777888689788992899899999858


No 15 
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.96  E-value=5.7e-29  Score=214.36  Aligned_cols=138  Identities=22%  Similarity=0.290  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC----CCCHHHHHHHHHHC-----CHHCCCEEEEEC
Q ss_conf             899999999999987088218889647999869989999843887----69848999999730-----010698899905
Q gi|254780348|r    6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTL   76 (364)
Q Consensus         6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~----G~~HAE~~al~~~~-----~~~~~atlyvtL   76 (364)
                      .|++||++|+++|+++.....++| ||||||+||+||++|++...    ...|||++||++|.     ..+.|+||||||
T Consensus        10 d~e~~M~~Ai~~A~~~~~~g~~~P-vGaVIv~~g~ii~~~~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~g~tlYvT~   88 (164)
T 1wkq_A           10 NHETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSC   88 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSSSS-CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             999999999999998855799998-8999997998999970010025776501899999999874388775898899866


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf             7321157521055565301343246630101211012433--------11001898896222101232001222201134
Q gi|254780348|r   77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK  148 (364)
Q Consensus        77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi--------~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~  148 (364)
                      |||      |+|+.+|+++||+|||+|..||++...|-..        ..+.+.++.|.++..+|+..+++.| .+...+
T Consensus        89 EPC------~mC~~ai~~agI~~Vvyg~~d~~~~~~g~~~~~~~~~i~~~~~~~~i~v~~~~~~e~l~~f~~~-~~~~~K  161 (164)
T 1wkq_A           89 EPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAW-RNFANK  161 (164)
T ss_dssp             CCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCEEECCCTTTTHHHHHH-HHCTTC
T ss_pred             CCH------HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHH-HHHCCC
T ss_conf             843------9999999985689899997389864457527878999837977588008258889987999999-885079


Q ss_pred             CCH
Q ss_conf             222
Q gi|254780348|r  149 RSH  151 (364)
Q Consensus       149 rP~  151 (364)
                      |||
T Consensus       162 ~~Y  164 (164)
T 1wkq_A          162 KEY  164 (164)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             979


No 16 
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.94  E-value=3e-27  Score=202.76  Aligned_cols=128  Identities=26%  Similarity=0.318  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC------------------------------------
Q ss_conf             99999999999987088218889647999869989999843887------------------------------------
Q gi|254780348|r    7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG------------------------------------   50 (364)
Q Consensus         7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~------------------------------------   50 (364)
                      ++.||+.|...|++.   +-|+..||||||+||+|||+||+..+                                    
T Consensus         3 ~~~~M~~A~~~a~rS---~c~~~~VGAVIV~~~~IIs~G~Ng~P~G~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (193)
T 1vq2_A            3 ASTVLQIAYLVSQES---KCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG   79 (193)
T ss_dssp             HHHHHHHHHHHHTTC---CCSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-----------------
T ss_pred             HHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf             899999999999758---99999878999989989998748997688764533101211103211122210110000112


Q ss_pred             ---------------------CCCHHHHHHHHHHC---CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             ---------------------69848999999730---010698899905732115752105556530134324663010
Q gi|254780348|r   51 ---------------------GCPHAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD  106 (364)
Q Consensus        51 ---------------------G~~HAE~~al~~~~---~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~D  106 (364)
                                           ...|||++||.++.   ....|+|||||+|||.+      |+.+|+++||+||||+..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~iHAE~~ai~~~~~~~~~~~~~~lyvt~~PC~~------Ca~~i~~~gI~~V~~~~~~  153 (193)
T 1vq2_A           80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYCETY  153 (193)
T ss_dssp             ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHH------HHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHH------HHHHHHHHCCCEEEEEECC
T ss_conf             1100000002332100136788769899999999883788877436647896599------9999999798989996289


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             121101243311001898896222101232001222201
Q gi|254780348|r  107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ  145 (364)
Q Consensus       107 Pnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~  145 (364)
                      |+.  .+.|.++|+++||+|..+.++++..||..+|...
T Consensus       154 ~~~--~~~~~~~l~~~gI~v~~i~~~~~~~l~~~~~~~~  190 (193)
T 1vq2_A          154 DKN--KPGWDDILRNAGIEVFNVPKKNLNKLNWENINEF  190 (193)
T ss_dssp             TTC--CTTTTHHHHHTTCEEEECCGGGCCSSCGGGCCCB
T ss_pred             CCC--CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             995--3799999998799799519999999999999998


No 17 
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.94  E-value=6e-27  Score=200.73  Aligned_cols=168  Identities=18%  Similarity=0.148  Sum_probs=133.6

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCC----CHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             011010278772021136532222----1013566676420144036631220134542354434444344215764466
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPIT----GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH  227 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT----~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~  227 (364)
                      |++++|+|+|||||..+|++.|++    +++++.++|.+|+.+||||+|.+|+..|+|.|+.|..... .. ..+|++++
T Consensus         6 vi~~~a~SlDG~Ia~~~g~~~w~~~~~~~~~~~~~~~~~~~~~dail~Gr~T~~~~~~~~~~~~~~~~-~~-~~~v~~~~   83 (178)
T 3jtw_A            6 VILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYA-DR-QTYIVTSH   83 (178)
T ss_dssp             EEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTTT-TS-EEEEECSS
T ss_pred             EEEEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCCCC-CC-CEEEEEEC
T ss_conf             98999991898678999995772478887799999999984399899894363301535894433458-98-47999632


Q ss_pred             CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC
Q ss_conf             89980221003444670798546554210110022322222333222788999986079969998123899999997889
Q gi|254780348|r  228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL  307 (364)
Q Consensus       228 l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~L  307 (364)
                      ..-                        .      ..++.   .-..++.++++.|.+++.++++||||+.++++||+++|
T Consensus        84 ~~~------------------------~------~~~~~---~~~~~~~~~~~~l~~~~~~~i~v~GG~~l~~~fl~~~L  130 (178)
T 3jtw_A           84 LGE------------------------D------TDKIK---YWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANL  130 (178)
T ss_dssp             CCC------------------------C------CSSEE---EECSCHHHHHHHHHTSSCCEEEEEECHHHHHHHHHTTC
T ss_pred             CCC------------------------C------CCCCE---ECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC
T ss_conf             443------------------------2------34530---02799999999999747995699864999999987798


Q ss_pred             CCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEE
Q ss_conf             8899999607432688752333454544464054468867936999950
Q gi|254780348|r  308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG  356 (364)
Q Consensus       308 vDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~  356 (364)
                      |||+++|++|.++|+ |.+.+ .......+|++++++.++++++++|.|
T Consensus       131 vDel~l~~~P~ilG~-G~~lf-~~~~~~~~l~L~~~~~~~~~v~l~Y~R  177 (178)
T 3jtw_A          131 IDTYILTTVPIFLGS-GIRLF-DRLEEQVPVRLIDVYQKNELVYSIYQR  177 (178)
T ss_dssp             CSEEEEEEESCCCCS-SEESS-SCCCSCCCEEEEEEEEETTEEEEEEEE
T ss_pred             CCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEEECCEEEEEEEC
T ss_conf             777576991088668-86077-887667784897899969999999827


No 18 
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.94  E-value=8.9e-27  Score=199.55  Aligned_cols=136  Identities=21%  Similarity=0.402  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCC-----------------------CCHHHHHH
Q ss_conf             7789999999999998708821888964799986-99899998438876-----------------------98489999
Q gi|254780348|r    4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-----------------------CPHAEVQA   59 (364)
Q Consensus         4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G-----------------------~~HAE~~a   59 (364)
                      -+-|+.||+.|+.+|++.   +.||+.||||||+ +|+|++.||+...+                       ..|||++|
T Consensus        10 ~~wde~fM~~A~~~A~~S---~~~~~~VGAVIV~~~~~ii~~g~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~na   86 (178)
T 2w4l_A           10 LEWPEYFMAVAFLSAQRS---KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNA   86 (178)
T ss_dssp             CCHHHHHHHHHHHHHTTC---CCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             789999999999999736---99999858999979938986114677898874433100111265422333312469999


Q ss_pred             HHHH-CCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCEEEECCCCHHHHH
Q ss_conf             9973-00106988999057321157521055565301343246630101211-012433110018988962221012320
Q gi|254780348|r   60 LEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRMMESEGKIF  137 (364)
Q Consensus        60 l~~~-~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~-v~gkGi~~L~~~GI~V~~~~~~~~~~l  137 (364)
                      |..+ +....|+|||||+|||++      |+.+|+++||+|||++..||++. ..+.|.++|+++||+|+.+ +.++.++
T Consensus        87 i~~~~~~~~~~~tlYvT~ePC~~------Ca~~I~~~GIk~Vvy~~~~~~~~~~~~~~~~~l~~aGI~v~~~-~~~~~~i  159 (178)
T 2w4l_A           87 IMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKF-IPKCSKI  159 (178)
T ss_dssp             HHC----CCTTCEEEEEECCCHH------HHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEEEC-CCSCSEE
T ss_pred             HHHHCCCCCCCCEEEECCCCHHH------HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEC-CHHHHHH
T ss_conf             99847788779868871898799------9999999498989996467898077799999999889999985-7448789


Q ss_pred             HHHHHHHCCCCCCH
Q ss_conf             01222201134222
Q gi|254780348|r  138 LHAYLTRQVEKRSH  151 (364)
Q Consensus       138 n~~f~~~~~~~rP~  151 (364)
                      ...|  ...+++|-
T Consensus       160 ~~~f--~~~~~~p~  171 (178)
T 2w4l_A          160 VIDF--DSINSRPS  171 (178)
T ss_dssp             EEEG--GGC-----
T ss_pred             HHHH--HHHCCCCC
T ss_conf             9889--98658987


No 19 
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.94  E-value=9.8e-27  Score=199.27  Aligned_cols=116  Identities=22%  Similarity=0.346  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC-CCCC------------------HHHHHHHHHHC-
Q ss_conf             789999999999998708821888964799986998999984388-7698------------------48999999730-
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------------------HAEVQALEEAG-   64 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~-~G~~------------------HAE~~al~~~~-   64 (364)
                      +.|+.||+.|+.+|++.   +.||+.||||||++|+||++||... .|.+                  |||++||.+|. 
T Consensus        40 swDeyfM~lA~~~A~rS---~~p~~~VGAVIV~~~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a~~  116 (184)
T 2hvw_A           40 SWQDYFMANAELISKRS---TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAK  116 (184)
T ss_dssp             CHHHHHHHHHHHHGGGC---CCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999999746---999998889999899699986378888788733215510012245534789988999976


Q ss_pred             --CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             --01069889990573211575210555653013432466301012110124331100189889622210
Q gi|254780348|r   65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES  132 (364)
Q Consensus        65 --~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~~~  132 (364)
                        ..++|+|||||+|||.+      |+.+|+++||+|||++..+++   .+.|+++|+++||+|...-.+
T Consensus       117 ~~~~~~gatLYvT~ePC~~------Ca~~Ii~aGIkrVVy~~~y~~---~~~~~~~l~~~gIev~~~~~~  177 (184)
T 2hvw_A          117 EGISANNTEIYVTHFPCIN------CTKALLQAGVKKITYNTAYRI---HPFAIELMTQKEVEYVQHDVP  177 (184)
T ss_dssp             HTCCCTTEEEEEEECCCHH------HHHHHHHHTEEEEEEEECCSC---CHHHHHHHHHHTCEEEECCCC
T ss_pred             HHCCCCCCEEEECCCCHHH------HHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHCCCEEEECCCC
T ss_conf             3303466227987898599------999999819898997706689---809999999879989977831


No 20 
>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94  E-value=1.3e-25  Score=191.61  Aligned_cols=179  Identities=18%  Similarity=0.194  Sum_probs=129.6

Q ss_pred             HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH----HHHHCCCCEEEEHHHHCCCCCCCCCCCCCC
Q ss_conf             1222201134222011010278772021136532222101356667----642014403663122013454235443444
Q gi|254780348|r  139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPELTCRLNGL  214 (364)
Q Consensus       139 ~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh----~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~  214 (364)
                      +.||+.-..+   | +.+|+|+|||||.++|+++|||++.++..+|    .+|+++||||+|.+|+..+.+..    ...
T Consensus        13 ~~~~~~~M~~---I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~dailvGr~Ty~~~~~~~----~~~   84 (197)
T 3ky8_A           13 ENLYFQGMAN---I-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFD----CDW   84 (197)
T ss_dssp             CCTTTTTCEE---E-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHHHHCCTT----CCC
T ss_pred             HHHHHHCCCC---E-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCEECCCCCC----CCC
T ss_conf             5656605700---0-3999948782189899836847988878999999999854899997814110335557----556


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
Q ss_conf             43442157644668998022100344467079854655421011002232222233322278899998607996999812
Q gi|254780348|r  215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG  294 (364)
Q Consensus       215 ~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEG  294 (364)
                      . ..|.++|+++...-..     .. ....+                    .   .-..++.++++.|.+.|.+.+++||
T Consensus        85 ~-~~~~~~V~s~~~~~~~-----~~-~~~~v--------------------~---~~~~d~~~~l~~l~~~g~~~i~igG  134 (197)
T 3ky8_A           85 P-YSKPVFVLSNTMTEVP-----QG-YEDKV--------------------F---LVKGKLVDIIADLNAKGFNELYIDG  134 (197)
T ss_dssp             C-CSSCEEEECSSCCSCC-----TT-CTTTE--------------------E---EECSCHHHHHHHHHHTTCCEEEEES
T ss_pred             C-CCCCEEEECCCCCCCC-----CC-CCCCE--------------------E---EECCCHHHHHHHHHHCCCCEEEECC
T ss_conf             6-7887899706666455-----46-89989--------------------9---9829979999999967996699816


Q ss_pred             HHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEECC
Q ss_conf             3899999997889889999960743268875233345454446405446886793-699995074
Q gi|254780348|r  295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN  358 (364)
Q Consensus       295 G~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k~  358 (364)
                      |+. +++||++|||||+++|++|+++|+ |.+.+ .......+|++++++.++++ +.++|.+|.
T Consensus       135 g~~-~~~~l~~gLvDEl~l~i~P~llG~-G~~lF-~~~~~~~~L~L~~~~~~~~g~v~l~Y~~kr  196 (197)
T 3ky8_A          135 GVT-IQNFLKEDLIDEMVITRFPILLGG-GVPLF-GELESSLSFNVIKSEVVLDSLTQTTYHRKR  196 (197)
T ss_dssp             HHH-HHHHHHTTCCCEEEEEEESEECSS-SEESC-CCCSSCEEEEEEEEEEETTTEEEEEEEECC
T ss_pred             CCC-CHHHHHCCCCCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEECCCCEEEEEEEEEE
T ss_conf             761-100120688755799992379758-85166-777767677896889928986999999950


No 21 
>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2
Probab=99.93  E-value=1.7e-25  Score=190.92  Aligned_cols=133  Identities=23%  Similarity=0.325  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCEEEEEEECCCC----CCCHHHHHHHHHHCCH----------H
Q ss_conf             7789999999999998708821888964799986--9989999843887----6984899999973001----------0
Q gi|254780348|r    4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEEAGEE----------A   67 (364)
Q Consensus         4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~--~g~ii~~g~~~~~----G~~HAE~~al~~~~~~----------~   67 (364)
                      .+.|+.||++||++|+++...  .+.+||||||+  +|+||++|+.+..    ...|||++||++|.++          .
T Consensus        25 ~~~~e~~M~~aielAr~~~~~--g~~P~GavIv~~d~g~Iia~g~N~~~~~~dpt~HAEi~Ai~~a~~~~~~~~l~~~~~  102 (197)
T 2g84_A           25 LAAPEARMGYVLELVRANIAA--DGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGL  102 (197)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHT--TCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTS
T ss_pred             CCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             788599999999999999876--999789999988999899987177778899663799999999999847654466455


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC--------CCCCCCCCCCEEE-ECCCCHHHHHH
Q ss_conf             69889990573211575210555653013432466301012110124--------3311001898896-22210123200
Q gi|254780348|r   68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--------GLQWLSQKGIIVD-RMMESEGKIFL  138 (364)
Q Consensus        68 ~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gk--------Gi~~L~~~GI~V~-~~~~~~~~~ln  138 (364)
                      .++|||+|||||      |.|+.+|+++||+|||||..||+....|.        ....+.+.+|+|. +++++||..+.
T Consensus       103 ~~~tlYtT~EPC------~MC~~Ai~~agI~rVvyg~~~~d~~~~G~~~~~~~~~~~~~~~~~~i~v~ggvl~dE~~~Ll  176 (197)
T 2g84_A          103 PACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALL  176 (197)
T ss_dssp             CCEEEEEEECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHH
T ss_pred             CCCEEEEECCCC------HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHH
T ss_conf             585799634778------88999999862798999960898654576532027777668765999898688899999999


Q ss_pred             HHHHHH
Q ss_conf             122220
Q gi|254780348|r  139 HAYLTR  144 (364)
Q Consensus       139 ~~f~~~  144 (364)
                      +.|+..
T Consensus       177 k~f~~~  182 (197)
T 2g84_A          177 REYNAC  182 (197)
T ss_dssp             HHHHHH
T ss_pred             HHHHHC
T ss_conf             999976


No 22 
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.78  E-value=5.9e-18  Score=140.01  Aligned_cols=161  Identities=19%  Similarity=0.236  Sum_probs=116.1

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             01101027877202113653222210135666764201440366312201345423544344443442157644668998
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS  231 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~  231 (364)
                      |++-+|+|+||+||..++  .| +.++.+++.+.+++..|+|++|.+|...-.     + + +..  -..+|++++....
T Consensus         3 ii~~~a~s~dG~Ia~~~~--~W-~~~ed~~~f~~~~~~~~~vimGr~T~e~~~-----~-p-l~~--r~~iVls~~~~~~   70 (168)
T 1cz3_A            3 VIFVLAMDVSGKIASSVE--SW-SSFEDRKNFRKITTEIGNVVMGRITFEEIG-----R-P-LPE--RLNVVLTRRPKTS   70 (168)
T ss_dssp             EEEEEEECTTCEEECSCT--TC-SCHHHHHHHHHHHHHHTEEEEEHHHHHHHC-----S-C-CTT--SEEEEECSSCCCC
T ss_pred             EEEEEEECCCCCEECCCC--CC-CCHHHHHHHHHHHCCCCEEEECCCHHHHCC-----C-C-CCC--CEEEEEEECCCCC
T ss_conf             999999848984789798--98-998999999999708998999741766275-----4-3-679--7499997533113


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
Q ss_conf             02210034446707985465542101100223222223332227889999860799699981238999999978898899
Q gi|254780348|r  232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI  311 (364)
Q Consensus       232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl  311 (364)
                      .         ...++                       .-..++.++++.|.+.+.++|+|+||+.+.++||+++|+||+
T Consensus        71 ~---------~~~~~-----------------------~~~~~~~~~i~~l~~~~~~~i~v~GG~~i~~~~l~~~lvDel  118 (168)
T 1cz3_A           71 N---------NPSLV-----------------------FFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDEL  118 (168)
T ss_dssp             S---------CTTEE-----------------------EECSCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCSEE
T ss_pred             C---------CCCEE-----------------------EECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEE
T ss_conf             3---------68779-----------------------971889999998875699858999239999998658656788


Q ss_pred             EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC--EEEEEEECC
Q ss_conf             99960743268875233345454446405446886793--699995074
Q gi|254780348|r  312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGKN  358 (364)
Q Consensus       312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D--v~~~y~~k~  358 (364)
                      ++++.|.++|+ |.+.+ ........+++.+.+.++++  +.++|..+.
T Consensus       119 ~lt~ip~~~g~-G~~~f-~~~~~~~~l~l~~~~~~~~~g~v~l~Y~v~k  165 (168)
T 1cz3_A          119 FVTVEPYVFGK-GIPFF-DEFEGYFPLKLLEMRRLNERGTLFLKYSVEK  165 (168)
T ss_dssp             EEEECSEEESS-CEESS-CCCSCEEEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             EEEEEEEECCC-CCCCC-CCCCCCCCEEEEEEEEECCCCEEEEEEEEEE
T ss_conf             99997175588-88778-9888776249978899589988999999983


No 23 
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=98.55  E-value=1e-06  Score=64.24  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=101.3

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             01101027877202113653222210135666764201440366312201345423544344443442157644668998
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS  231 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~  231 (364)
                      +++=+|++.||-|+ .+|+--|..-++..++...+ ....++++|.+|...    |--.+   +++  ..+|++++..- 
T Consensus         3 i~~I~A~~~~~~IG-~~~~lPW~~~~~Dl~~F~~~-T~~~~vIMGrkT~es----l~~pl---p~R--~~iVlsr~~~~-   70 (162)
T 1vdr_A            3 LVSVAALAENRVIG-RDGELPWPSIPADKKQYRSR-IADDPVVLGRTTFES----MRDDL---PGS--AQIVMSRSERS-   70 (162)
T ss_dssp             EEEEEEEEETSEEE-BTTBCSSCCCHHHHHHHHHH-TSSSCEEEEHHHHHH----TTTSC---CSS--SEEEECSSCCC-
T ss_pred             EEEEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHH-CCCCEEEEECCCHHH----HHHCC---CCC--CEEEEEECCCC-
T ss_conf             99999998999576-79968773588899999985-589779998770254----31125---687--32999712121-


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
Q ss_conf             02210034446707985465542101100223222223332227889999860799699981238999999978898899
Q gi|254780348|r  232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI  311 (364)
Q Consensus       232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl  311 (364)
                                                  ....++.+    ..++.++++.+.+.+.+.|+|-||+++...|+.  ++||+
T Consensus        71 ----------------------------~~~~~~~~----~~~~~~ai~~~~~~~~~~I~ViGG~~Iy~~~l~--~~dei  116 (162)
T 1vdr_A           71 ----------------------------FSVDTAHR----AASVEEAVDIAASLDAETAYVIGGAAIYALFQP--HLDRM  116 (162)
T ss_dssp             ----------------------------CCSSSCCE----ESSHHHHHHHHHHTTCSCEEEEECHHHHHHHGG--GCSEE
T ss_pred             ----------------------------CCCCCEEE----EEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHH--HCCEE
T ss_conf             ----------------------------02697699----612999999986289966999877899999987--43857


Q ss_pred             EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC
Q ss_conf             99960743268875233345454446405446886793699995074
Q gi|254780348|r  312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN  358 (364)
Q Consensus       312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~k~  358 (364)
                      ++++-+....++. -.|  . .....|++++.....+=.+.+|.|+.
T Consensus       117 ~iT~I~~~~~~D~-~fP--~-~d~~~~~~~~~~~~~~f~~~~y~Rk~  159 (162)
T 1vdr_A          117 VLSRVPGEYEGDT-YYP--E-WDAAEWELDAETDHEGFTLQEWVRSA  159 (162)
T ss_dssp             EEEEEEEECCCSE-ECC--C-CCTTTEEEEEEEECSSCEEEEEEEC-
T ss_pred             EEEEECCCCCCCE-ECC--C-CCHHHCEEEEEEECCCEEEEEEEECC
T ss_conf             9999756646767-888--8-98689899999616997999999369


No 24 
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A*
Probab=98.39  E-value=9.9e-06  Score=57.52  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             HHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCCCC
Q ss_conf             101027877202113653222210135666764201440366312201345423544344443442--157644668998
Q gi|254780348|r  154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFKLS  231 (364)
Q Consensus       154 lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~i~  231 (364)
                      |=+|++.||-|+. +|+--| ..++.+++-.++ ....+|++|.+|...    |    ++  ...|  .-||++++... 
T Consensus         3 lI~A~~~ng~IG~-~~~lPW-~~~~D~~~F~~~-T~~~~vIMGrkT~es----~----p~--~pL~~R~niVls~~~~~-   68 (162)
T 3dfr_A            3 FLWAQNRNGLIGK-DGHLPW-HLPDDLHYFRAQ-TVGKIMVVGRRTYES----F----PK--RPLPERTNVVLTHQEDY-   68 (162)
T ss_dssp             EEEEECTTCEEEB-TTBCSS-CCHHHHHHHHHT-TTTSEEEEEHHHHHH----S----SS--SSCTTSEEEEECSCTTC-
T ss_pred             EEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCHHHH----C----CC--CCCCCCEEEEECCCCCC-
T ss_conf             8999889994437-996687-798999999997-089859996252443----5----77--67799718998477542-


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
Q ss_conf             02210034446707985465542101100223222223332227889999860799699981238999999978898899
Q gi|254780348|r  232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI  311 (364)
Q Consensus       232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl  311 (364)
                                                   ...++.++    .++.+++..+.+...+.|+|-||+++...|+.  ++||+
T Consensus        69 -----------------------------~~~~~~~~----~s~~~~~~~~~~~~~~~i~IiGG~~IY~~~l~--~~d~i  113 (162)
T 3dfr_A           69 -----------------------------QAQGAVVV----HDVAAVFAYAKQHLDQELVIAGGAQIFTAFKD--DVDTL  113 (162)
T ss_dssp             -----------------------------CCTTSEEE----SSHHHHHHHHHHCCSSCEEECCCHHHHHHTGG--GCCEE
T ss_pred             -----------------------------CCCCEEEE----CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHH--HCCEE
T ss_conf             -----------------------------34886993----89999998765236665899687999999886--57999


Q ss_pred             EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC------EEEEEEECC
Q ss_conf             99960743268875233345454446405446886793------699995074
Q gi|254780348|r  312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD------VCLEYIGKN  358 (364)
Q Consensus       312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D------v~~~y~~k~  358 (364)
                      +++.-+....++. ..|   ......|.+++...+.+.      .+.+|.||.
T Consensus       114 ~lT~I~~~~~~D~-~fp---~~~~~~~~~i~~~~~~~~~~~~~y~F~iy~RK~  162 (162)
T 3dfr_A          114 LVTRLAGSFEGDT-KMI---PLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA  162 (162)
T ss_dssp             EEEEESSCCCCSE-ECC---CCCGGGEEEEEEEEECCSSGGGCEEEEEEEECC
T ss_pred             EEEEECCCCCCCE-EEC---CCCHHHCEEEEEEEECCCCCCCCEEEEEEEEEC
T ss_conf             9987567647876-806---788589699998852256799747999999719


No 25 
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=98.33  E-value=1.2e-05  Score=57.03  Aligned_cols=159  Identities=16%  Similarity=0.083  Sum_probs=95.1

Q ss_pred             HHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             20110102787720211365322221013566676420------------144036631220134542354434444344
Q gi|254780348|r  151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------------QSDAILVGIGTVLADDPELTCRLNGLQEHS  218 (364)
Q Consensus       151 ~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~  218 (364)
                      -+.+=.|++.||-|+ .+|+--|-.-++..++..++-.            .-++|++|.+|...        ++....+-
T Consensus        14 ~i~lIvA~~~n~~IG-~~~~LPW~~lp~Dl~~Fk~~T~~~~~~~~~~~~~~~n~VIMGRkT~eS--------ip~~~~PL   84 (515)
T 3nrr_A           14 DLTIFVAVALNKVIG-HKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES--------IPKASLPL   84 (515)
T ss_dssp             CEEEEEEECTTSEEE-BTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHT--------SCGGGCSC
T ss_pred             CEEEEEEECCCCEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHH--------CCCCCCCC
T ss_conf             689999988999276-799688865999999999973689764433435679589980674766--------89777889


Q ss_pred             CEE--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEECCH
Q ss_conf             215--76446689980221003444670798546554210110022322222333222788999986-079969998123
Q gi|254780348|r  219 PMR--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGG  295 (364)
Q Consensus       219 P~r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~-~~gi~~iLVEGG  295 (364)
                      |-|  ||++++..-                               ..++.+.    .++.++++.+. +.+...|+|-||
T Consensus        85 p~R~nIVlSr~~~~-------------------------------~~~~~~~----~sl~~al~~~~~~~~~~~i~IiGG  129 (515)
T 3nrr_A           85 KNRINVILSRTVKE-------------------------------VPGCLVY----EDLSTAIRDLRANVPHNKIFILGG  129 (515)
T ss_dssp             TTEEEEEECSSCCC-------------------------------CTTEEEE----SSHHHHHHHHHHHSCCSCEEECCC
T ss_pred             CCCEEEEECCCCCC-------------------------------CCCCEEE----CCHHHHHHHHHHCCCCCCEEEECC
T ss_conf             77959998998976-------------------------------8996898----999999999984168785899651


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEE--ECCC---EEEEEEECC
Q ss_conf             89999999788988999996074326887523334545444640544688--6793---699995074
Q gi|254780348|r  296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSD---VCLEYIGKN  358 (364)
Q Consensus       296 ~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~--ig~D---v~~~y~~k~  358 (364)
                      +++...||...++|+++++.-..-..++. -+|  ..  ...|.+.+...  -.++   -+.+|.|++
T Consensus       130 ~~IY~~~l~~~~~d~i~lT~I~~~~~gD~-~FP--~i--~~~~~~~~~~~~~~~~~~~y~F~~y~Rk~  192 (515)
T 3nrr_A          130 SFLYKEVLDNGLCDKIYLTRLNKEYPGDT-YFP--DI--PDTFEITAISPTFSTDFVSYDFVIYERKD  192 (515)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEESSCCCCSE-ECC--CC--CTTEEEEEECCCEECSSCEEEEEEEEECC
T ss_pred             HHHHHHHCCCCCCCEEEEEEEEEEECCCC-CCC--CC--CCCCEEEEEECCCCCCCCCEEEEEEEEEC
T ss_conf             99999861634589899988805754773-178--88--74116999842546799965999999856


No 26 
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=98.32  E-value=3.2e-05  Score=54.08  Aligned_cols=82  Identities=16%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCCE
Q ss_conf             22788999986079969998123899999997889889999960743268875233345454446405446886--7936
Q gi|254780348|r  273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSDV  350 (364)
Q Consensus       273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~Dv  350 (364)
                      .+++++++.+.+.+...|+|-||+.+..+||+..++|+++++.-..-+-++.   ++.. .....|++++...+  .+++
T Consensus       144 ~Sleeal~~l~~~~~~~IfVIGG~~IY~~~L~~~lid~IyLT~I~~~~egDt---fFP~-id~~~fklvs~~~~~~en~~  219 (280)
T 1j3k_A          144 NKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDV---FFPE-INENEYQIISVSDVYTSNNT  219 (280)
T ss_dssp             SSHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEECCSE---ECCC-CCTTTEEEEEECCCEEETTE
T ss_pred             CCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEEEEECCEECCCE---ECCC-CCHHHCEEEEEECCCCCCCC
T ss_conf             6899999998641466379976899999985143279899999897126776---6797-88588989985231337897


Q ss_pred             ---EEEEEECC
Q ss_conf             ---99995074
Q gi|254780348|r  351 ---CLEYIGKN  358 (364)
Q Consensus       351 ---~~~y~~k~  358 (364)
                         +.+|.|++
T Consensus       220 ~Y~F~iY~R~n  230 (280)
T 1j3k_A          220 TLDFIIYKKTN  230 (280)
T ss_dssp             EEEEEEEEECC
T ss_pred             CEEEEEEECCC
T ss_conf             05899998268


No 27 
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3fs6_A* 1mvs_A* ...
Probab=98.25  E-value=1.1e-05  Score=57.15  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=81.7

Q ss_pred             HHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEEC
Q ss_conf             10102787720211365322221013566676420------144036631220134542354434444344215--7644
Q gi|254780348|r  154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILD  225 (364)
Q Consensus       154 lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld  225 (364)
                      +=+|++.||-|.. +|+--|...++..++...+-.      ..++|++|.+|...        ++.....-|-|  ||++
T Consensus         6 ~I~A~~~n~~IG~-~g~lPW~~~~~Dl~~Fk~~T~~~~~~~~~~~vIMGrkT~es--------~p~~~rpLp~R~niVlS   76 (186)
T 1kmv_A            6 CIVAVSQNMGIGK-NGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS--------IPEKNRPLKGRINLVLS   76 (186)
T ss_dssp             EEEEECTTCEEEB-TTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTTSEEEEEC
T ss_pred             EEEEECCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH--------CCCCCCCCCCCEEEEEE
T ss_conf             9999889996737-99187988989999999986799877774189994673431--------76567626996699983


Q ss_pred             CCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHH
Q ss_conf             66899802210034446707985465542101100223222223332227889999860----79969998123899999
Q gi|254780348|r  226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAVAHS  301 (364)
Q Consensus       226 ~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~----~gi~~iLVEGG~~l~~s  301 (364)
                      ++...+.+.                              ...+   ..+++++++.+..    .....|+|-||+.+..+
T Consensus        77 r~~~~~~~~------------------------------~~~v---~~s~~~~~~~~~~~~~~~~~~~ifIIGG~~IY~~  123 (186)
T 1kmv_A           77 RELKEPPQG------------------------------AHFL---SRSLDDALKLTEQPELANKVDMVWIVGGSSVYKE  123 (186)
T ss_dssp             SSCSSCCTT------------------------------CSEE---ESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHH
T ss_pred             CCCCCCCCC------------------------------CEEE---CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf             254445687------------------------------6686---1889999998654765067766999750999999


Q ss_pred             HHHCCCCCEEEEEEECEEECCC
Q ss_conf             9978898899999607432688
Q gi|254780348|r  302 FINSRLVDSIILYRSQIVIGEG  323 (364)
Q Consensus       302 fl~~~LvDEl~ifiaP~ilG~~  323 (364)
                      ||+..++||+|++.-..-..++
T Consensus       124 ~l~~~~~d~i~lT~I~~~~~~D  145 (186)
T 1kmv_A          124 AMNHPGHLKLFVTRIMQDFESD  145 (186)
T ss_dssp             HHTSCSCEEEEEEEESSCCCCS
T ss_pred             HHHCCCCCEEEEEEECCCCCCC
T ss_conf             9737554479999972244788


No 28 
>2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 4cd2_A* 1vj3_A*
Probab=98.22  E-value=4.5e-06  Score=59.81  Aligned_cols=133  Identities=17%  Similarity=0.149  Sum_probs=81.2

Q ss_pred             CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH---------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             42220110102787720211365322221013566676420---------144036631220134542354434444344
Q gi|254780348|r  148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---------QSDAILVGIGTVLADDPELTCRLNGLQEHS  218 (364)
Q Consensus       148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa---------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~  218 (364)
                      +.+-+.+=.|++.+|-|+. +|+--| .-++..++..++-.         .-++|++|.+|...        ++.....-
T Consensus         3 ~~~~i~lI~A~~~n~~IG~-~~~LPW-~l~~Dl~~Fk~~T~~~~~~~~~~~~n~VIMGRkT~eS--------ip~~~rPL   72 (206)
T 2fzi_A            3 QQKSLTLIVALTTSYGIGR-SNSLPW-KLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWES--------IPLQFRPL   72 (206)
T ss_dssp             SSSCEEEEEEEETTCEEES-SSSCSS-CCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHH--------SCGGGCSC
T ss_pred             CCCEEEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECC--------CCCCCCCC
T ss_conf             8871899999889996627-992478-7989999999974789765654557589994072436--------77666788


Q ss_pred             CEE--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-------CCCCE
Q ss_conf             215--764466899802210034446707985465542101100223222223332227889999860-------79969
Q gi|254780348|r  219 PMR--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-------RGVTS  289 (364)
Q Consensus       219 P~r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~-------~gi~~  289 (364)
                      |-|  ||++++.....                             ..++.+    ..++.+.++.+.+       .++..
T Consensus        73 p~R~niVlSr~~~~~~-----------------------------~~~~~~----~~s~~~al~~~~~~~~~~~~~~~~~  119 (206)
T 2fzi_A           73 KGRINVVITRNESLDL-----------------------------GNGIHS----AKSLDHALELLYRTYGSESSVQINR  119 (206)
T ss_dssp             TTEEEEEECSCCSSCC-----------------------------CSSCEE----ESSHHHHHHHHHHHSCTTSSSEEEE
T ss_pred             CCCEEEEEECCCCCCC-----------------------------CCCEEE----ECCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             9974899926887556-----------------------------899699----6789999999998665653046764


Q ss_pred             EEECCHHHHHHHHHHCCCCCEEEEEEECEEECCC
Q ss_conf             9981238999999978898899999607432688
Q gi|254780348|r  290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG  323 (364)
Q Consensus       290 iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~  323 (364)
                      |+|-||+++..+||+..++|+++++.-..-+.++
T Consensus       120 I~IiGG~~IY~~~l~~~~~d~i~lT~I~~~~~~D  153 (206)
T 2fzi_A          120 IFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCD  153 (206)
T ss_dssp             EEEEECHHHHHHHHHCTTEEEEEEEEEESCCCCS
T ss_pred             EEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf             9994639999998577010889999967632688


No 29 
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=98.19  E-value=4.8e-05  Score=52.91  Aligned_cols=158  Identities=15%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             HHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf             20110102787720211365322221013566676420144036631220134542354434444344215764466899
Q gi|254780348|r  151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL  230 (364)
Q Consensus       151 ~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i  230 (364)
                      -|++=+|++.+|-|+. +|+--| ..++..++...+ ..-.++++|.+|...    |-.+    .-..-..||++++...
T Consensus        24 ~i~~I~A~~~n~~IG~-~~~lPW-~~~eDl~~Fk~~-T~~~~vIMGrkT~eS----lp~~----pl~~R~niVlsr~~~~   92 (190)
T 3ix9_A           24 KIVAIWAQDEEGVIGK-DNRLPW-YLPAELQHFKET-TLNHAILMGRVTFDG----MGRR----LLPKRETLILTRNPEE   92 (190)
T ss_dssp             CEEEEEEECTTCEEEB-TTBCSC-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----TTTC----CCTTCEEEEECCSCCS
T ss_pred             EEEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCHHH----HCCC----CCCCCEEEEEECCCCC
T ss_conf             0689999989997737-997477-688999999997-289709997661265----4102----4489649999656433


Q ss_pred             CHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCE
Q ss_conf             80221003444670798546554210110022322222333222788999986079969998123899999997889889
Q gi|254780348|r  231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS  310 (364)
Q Consensus       231 ~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDE  310 (364)
                      .                              ..++.+    ..+++++++... .....|+|=||+++..+|+.  ++||
T Consensus        93 ~------------------------------~~~~~~----~~sl~~al~~~~-~~~~~i~VIGG~~IY~~~l~--~~d~  135 (190)
T 3ix9_A           93 K------------------------------IDGVAT----FHDVQSVLDWYS-AQEKNLYIVGGKQIFQAFEP--YLDE  135 (190)
T ss_dssp             C------------------------------CSSSEE----ESSHHHHHHHHH-TSCSCEEEEECHHHHHHHGG--GCSE
T ss_pred             C------------------------------CCCCEE----CCCHHHHHHHHH-HCCCEEEEECCHHHHHHHHH--HCCE
T ss_conf             5------------------------------576340----274999998886-25743999656899999998--7999


Q ss_pred             EEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-------EEEEEEECCC
Q ss_conf             999960743268875233345454446405446886793-------6999950743
Q gi|254780348|r  311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-------VCLEYIGKNL  359 (364)
Q Consensus       311 l~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-------v~~~y~~k~~  359 (364)
                      ++++.-+...-++   .++........|++++.+....|       .+..|.||+.
T Consensus       136 i~lT~I~~~~egD---~~FP~~~d~~~f~~i~~~~~~~de~~~y~f~~~~~~RK~~  188 (190)
T 3ix9_A          136 VIVTHIHARVEGD---TYFPAEFDLSLFETVSSKFYTKDEKNPYDFTIQYRKRKEV  188 (190)
T ss_dssp             EEEEEESSCCCCS---EECCCCCCGGGEEEEEEEEECCBTTBCSCEEEEEEEECCC
T ss_pred             EEEEEECCEECCC---EECCCCCCHHHCEEEEEEECCCCCCCCCCEEEEEEEEEEC
T ss_conf             9999978543787---7827844853689999996036889885389999995213


No 30 
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=97.97  E-value=0.00021  Score=48.60  Aligned_cols=79  Identities=20%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCCE-
Q ss_conf             2788999986079969998123899999997889889999960743268875233345454446405446886--7936-
Q gi|254780348|r  274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSDV-  350 (364)
Q Consensus       274 dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~Dv-  350 (364)
                      ++++++..+.+.+...|+|-||+++...||..+++|++|++.-..-+-++. -+|  . .....|+..+...+  .++. 
T Consensus       154 sleeal~~~~~~~~~~IfIIGG~~IY~~~L~~~~~d~iylT~I~~~~egDt-fFP--~-id~~~w~~~~~~~~~~e~~~~  229 (238)
T 2bl9_A          154 SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDV-FFP--E-FDESEFRVTSVSEVYNSKGTT  229 (238)
T ss_dssp             CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECCSE-ECC--C-CCGGGEEEEEECCCEEETTEE
T ss_pred             CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCE-ECC--C-CCHHHCEEEEEEEEECCCCCE
T ss_conf             788843566507766499974799999886630178899998457657776-889--8-885998999877315489980


Q ss_pred             --EEEEEE
Q ss_conf             --999950
Q gi|254780348|r  351 --CLEYIG  356 (364)
Q Consensus       351 --~~~y~~  356 (364)
                        +.+|.|
T Consensus       230 y~F~vY~R  237 (238)
T 2bl9_A          230 LDFLVYSK  237 (238)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
T ss_conf             79999997


No 31 
>3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum}
Probab=97.94  E-value=0.0005  Score=46.01  Aligned_cols=82  Identities=16%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCC-
Q ss_conf             22788999986079969998123899999997889889999960743268875233345454446405446886--793-
Q gi|254780348|r  273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSD-  349 (364)
Q Consensus       273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~D-  349 (364)
                      .++++++..+.+..+..|+|=||+++...||+..++|++|++.-..-+-.+.   ++.. .....|++.+....  .++ 
T Consensus       144 ~sl~~al~~~~~~~~~~IfIIGG~~IY~~~L~~p~~~~iylT~I~~~~ecDt---fFP~-id~~~f~~~~~s~~~~en~~  219 (608)
T 3jsu_A          144 NKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDV---FFPE-INENEYQIISVSDVYTSNNT  219 (608)
T ss_dssp             SSHHHHHHHHHHSCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECCSE---ECCC-CCTTTEEEEEEEEEEECSSC
T ss_pred             CCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCE---ECCC-CCHHHCEEEECCCCCCCCCC
T ss_conf             9999999997427997499973499999985175799899998767425733---6797-87599789841252146897


Q ss_pred             --EEEEEEECC
Q ss_conf             --699995074
Q gi|254780348|r  350 --VCLEYIGKN  358 (364)
Q Consensus       350 --v~~~y~~k~  358 (364)
                        -+.+|.|++
T Consensus       220 ~y~F~~Y~r~~  230 (608)
T 3jsu_A          220 TLDFIIYKKTN  230 (608)
T ss_dssp             EEEEEEEEECC
T ss_pred             CEEEEEEEECC
T ss_conf             44799999746


No 32 
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=97.83  E-value=0.00013  Score=50.08  Aligned_cols=125  Identities=14%  Similarity=0.090  Sum_probs=79.5

Q ss_pred             CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE--EEEEC
Q ss_conf             4222011010278772021136532222101356667642014403663122013454235443444434421--57644
Q gi|254780348|r  148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILD  225 (364)
Q Consensus       148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~--riVld  225 (364)
                      -+|-|.+=+|++.||-|+ .+|+--| .-++..++..++ ..-.+|++|.+|...=        ++....-|-  -+|++
T Consensus         2 ~~~~i~lI~A~~~n~~IG-~~~~lPW-~~~~Dl~~Fk~~-T~g~~vIMGrkT~~s~--------~~~~~pL~~r~niVlt   70 (167)
T 2w3w_A            2 TRAEVGLVWAQSTSGVIG-RGGDIPW-SVPEDLTRFKEV-TMGHTVIMGRRTWESL--------PAKVRPLPGRRNVVVS   70 (167)
T ss_dssp             -CCCCEEEEEEETTSEEE-BTTBCSC-CCHHHHHHHHHH-HTTSEEEEEHHHHHHS--------CGGGSSCTTSEEEEEC
T ss_pred             CCCEEEEEEEECCCCCEE-CCCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCCCC--------CCCCCCCCCCEEEEEE
T ss_conf             987299999999999762-8996166-688999999997-4898099978810005--------7556458998499995


Q ss_pred             CCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHC
Q ss_conf             66899802210034446707985465542101100223222223332227889999860799699981238999999978
Q gi|254780348|r  226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS  305 (364)
Q Consensus       226 ~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~  305 (364)
                      ++....                              ..++.+.    .+++++++.+..  ...++|=||+++..++|. 
T Consensus        71 r~~~~~------------------------------~~~~~v~----~s~~~al~~~~~--~~~i~IiGG~~IY~~~l~-  113 (167)
T 2w3w_A           71 RRPDFV------------------------------AEGARVA----GSLEAALAYAGS--DPAPWVIGGAQIYLLALP-  113 (167)
T ss_dssp             SCTTCC------------------------------CTTSEEE----SSHHHHHHHTTT--CSSCEEEECHHHHHHHGG-
T ss_pred             CCCCCC------------------------------CCCEEEE----CCHHHHHHHHCC--CCEEEEECCHHHHHHHHH-
T ss_conf             364203------------------------------6875995----689999987104--766999824999999997-


Q ss_pred             CCCCEEEEEEECEEEC
Q ss_conf             8988999996074326
Q gi|254780348|r  306 RLVDSIILYRSQIVIG  321 (364)
Q Consensus       306 ~LvDEl~ifiaP~ilG  321 (364)
                       ++|+++++.-.....
T Consensus       114 -~~d~l~iT~I~~~~~  128 (167)
T 2w3w_A          114 -HATRCEVTEIEIDLR  128 (167)
T ss_dssp             -GCSEEEEEEEECCCC
T ss_pred             -HCCEEEEEEEECCCC
T ss_conf             -689999999940136


No 33 
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=97.78  E-value=0.00035  Score=47.10  Aligned_cols=153  Identities=14%  Similarity=0.154  Sum_probs=92.2

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCC
Q ss_conf             01101027877202113653222210135666764201440366312201345423544344443442--1576446689
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFK  229 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~  229 (364)
                      +.+=+|++.||-|+ .+|+--| .-++..++..++ ..-.+|++|.+|...    |       ....|  ..||++++..
T Consensus         2 i~~I~A~~~n~~IG-~~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGRkT~es----i-------~~pL~~R~niVls~~~~   67 (164)
T 1zdr_A            2 ISHIVAMDENRVIG-KDNRLPW-HLPADLAYFKRV-TMGHAIVMGRKTFEA----I-------GRPLPGRDNVVVTGNRS   67 (164)
T ss_dssp             EEEEEEEETTCEEE-BTTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----H-------CSCCTTSEEEEECSCTT
T ss_pred             EEEEEEECCCCCCC-CCCCCCC-CCHHHHHHHHHH-CCCCEEEEECCHHHH----H-------HHCCCCCCEEEEECCCC
T ss_conf             79999998999782-8996165-588999999986-589789996426576----6-------54177883599860322


Q ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf             98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r  230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD  309 (364)
Q Consensus       230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD  309 (364)
                      ....                              +..+    ..++..++ .+.+.....++|=||+.+..+|+.  ++|
T Consensus        68 ~~~~------------------------------~~~~----~~~~~~~~-~~~~~~~~~i~IiGG~~iY~~~l~--~~~  110 (164)
T 1zdr_A           68 FRPE------------------------------GCLV----LHSLEEVK-QWIASRADEVFIIGGAELFRATMP--IVD  110 (164)
T ss_dssp             CCCT------------------------------TCEE----ECSHHHHH-HHHHTCCSCEEEEECHHHHHHHGG--GCC
T ss_pred             CCCC------------------------------CCEE----ECCHHHHH-HHHHCCCCCEEEECCHHHHHHHHH--HCC
T ss_conf             2356------------------------------5301----13689999-997437873899454899999987--526


Q ss_pred             EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECC-------CEEEEEEECCC
Q ss_conf             999996074326887523334545444640544688679-------36999950743
Q gi|254780348|r  310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-------DVCLEYIGKNL  359 (364)
Q Consensus       310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~-------Dv~~~y~~k~~  359 (364)
                      +++++.-+...-++ .-+|  . .....|++++......       -.+.+|.||+.
T Consensus       111 ~i~lT~I~~~~egD-~~FP--~-~~~~~~~~~~~~~~~~de~n~~~y~f~~y~Rk~~  163 (164)
T 1zdr_A          111 RLYVTKIFASFPGD-TFYP--P-ISDDEWEIVSYTPGGKDEKNPYEHAFIIYERKKA  163 (164)
T ss_dssp             EEEEEEESSCCCCS-EECC--C-CCTTTEEEEEEEECCCSSSSCSCEEEEEEEEC--
T ss_pred             EEEEEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEEEECC
T ss_conf             99999976453677-6788--8-9867889999887676788997479999997157


No 34 
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Probab=97.72  E-value=0.0011  Score=43.76  Aligned_cols=151  Identities=14%  Similarity=0.220  Sum_probs=91.7

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCC
Q ss_conf             01101027877202113653222210135666764201440366312201345423544344443442--1576446689
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFK  229 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~  229 (364)
                      |.+=+|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|...    |       ...-|  ..||++++.+
T Consensus         3 I~lI~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGrkT~es----l-------~~pL~~R~niVltr~~~   68 (162)
T 3ia4_A            3 VSMIAALANNRVIGL-DNKMPW-HLPAELQLFKRA-TLGKPIVMGRNTFES----I-------GRPLPGRLNIVLSRQTD   68 (162)
T ss_dssp             EEEEEEECGGGEEEB-TTBCSS-CCHHHHHHHHHH-HTTSCEEEEHHHHHH----H-------CSCCTTSCEEEECCCTT
T ss_pred             EEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCHH----H-------CCCCCCCEEEEEECCCC
T ss_conf             999999979994868-996274-188999999985-699769996761553----3-------22666753799946865


Q ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf             98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r  230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD  309 (364)
Q Consensus       230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD  309 (364)
                      ...+                              +..+    ..++.+.+...  .....++|=||+++..+|+.  ++|
T Consensus        69 ~~~~------------------------------~~~~----~~sl~~~~~~~--~~~~~i~VIGG~~iY~~~l~--~~d  110 (162)
T 3ia4_A           69 YQPE------------------------------GVTV----VATLEDAVVAA--GDVEELMIIGGATIYNQCLA--AAD  110 (162)
T ss_dssp             CCCT------------------------------TSEE----ESSHHHHHHHH--TTCSEEEECCCHHHHHHHGG--GCS
T ss_pred             CCCC------------------------------CEEE----ECCHHHHHHHH--CCCCCEEECCHHHHHHHHHH--HCC
T ss_conf             5659------------------------------8089----72789999973--68971799154999999997--699


Q ss_pred             EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-------EEEEEEECC
Q ss_conf             9999960743268875233345454446405446886793-------699995074
Q gi|254780348|r  310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-------VCLEYIGKN  358 (364)
Q Consensus       310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-------v~~~y~~k~  358 (364)
                      +++++.-+....++. -.|  . .....|+.++...+..|       .+.+|.|.+
T Consensus       111 ~i~iT~I~~~~~~D~-~FP--~-~~~~~~~~v~~~~~~~~e~n~~~y~f~~y~R~k  162 (162)
T 3ia4_A          111 RLYLTHIELTTEGDT-WFP--D-YEQYNWQEIEHESYAADDKNPHNYRFSLLERVK  162 (162)
T ss_dssp             EEEEEEECCCCCCSE-ECC--C-GGGSCEEEEEEEEECCBTTBCSCEEEEEEEECC
T ss_pred             EEEEEEECCEECCCE-ECC--C-CCHHHCEEEEEEEECCCCCCCCCEEEEEEEECC
T ss_conf             999988787246878-778--8-884678999988724678899747999999909


No 35 
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=97.63  E-value=0.00086  Score=44.43  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=88.4

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             01101027877202113653222210135666764201440366312201345423544344443442157644668998
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS  231 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~  231 (364)
                      |.+=+|++.||-|+. +|+--| ..++..++..++ ..-.+|++|.+|... -|+    .  ++++  .-||++++...+
T Consensus         2 i~~I~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGrkT~es-lp~----~--L~~R--~niVlsr~~~~~   69 (159)
T 3dau_A            2 ISLIAALAVDRVIGM-ENAMPW-NLPADLAWFKRN-TLNKPVIMGRHTWES-IGR----P--LPGR--KNIILSSQPGTD   69 (159)
T ss_dssp             EEEEEEECGGGEEEB-TTBCSS-CCHHHHHHHHHH-HTTSCEEEEHHHHHH-HCS----C--CTTS--CEEEECSSCCSC
T ss_pred             EEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCCCHH-HCC----C--CCCC--EEEEEECCCCCC
T ss_conf             899999979995328-996374-088999999998-389749997761243-213----6--7997--579982478866


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
Q ss_conf             02210034446707985465542101100223222223332227889999860799699981238999999978898899
Q gi|254780348|r  232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI  311 (364)
Q Consensus       232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl  311 (364)
                      ..           ....                        .++...+..  ......++|=||+++...|+.  ++|++
T Consensus        70 ~~-----------~~~~------------------------~~~~~~~~~--~~~~~~v~viGG~~iY~~~l~--~~d~i  110 (159)
T 3dau_A           70 DR-----------VTWV------------------------KSVDEAIAA--CGDVPEIMVIGGGRVYEQFLP--KAQKL  110 (159)
T ss_dssp             TT-----------SEEE------------------------SSHHHHHHT--TCSCSCEEECCCHHHHHHHGG--GCSEE
T ss_pred             CE-----------EEEE------------------------CCHHHHHHH--HCCCCCEEEECCHHHHHHHHH--HCCEE
T ss_conf             32-----------6774------------------------169999998--547873699828999999998--79999


Q ss_pred             EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECC------C-EEEEEEEC
Q ss_conf             9996074326887523334545444640544688679------3-69999507
Q gi|254780348|r  312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS------D-VCLEYIGK  357 (364)
Q Consensus       312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~------D-v~~~y~~k  357 (364)
                      +++.-+.-..++ .-.|  . .....|..+.......      + .+.+|.||
T Consensus       111 ~lT~I~~~~e~D-~~FP--~-~d~~~~~~v~~~~~~~d~~n~~~y~f~~y~rk  159 (159)
T 3dau_A          111 YLTHIDAEVEGD-THFP--D-YEPDDWESVFSEFHDADAQNSHSYCFEILERR  159 (159)
T ss_dssp             EEEEECCCCCCS-EECC--C-CCGGGEEEEEEEEECCBTTBSSCEEEEEEEEC
T ss_pred             EEEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf             999757721676-6579--8-89689899998862667778986799999769


No 36 
>3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=97.61  E-value=0.00071  Score=44.98  Aligned_cols=151  Identities=13%  Similarity=0.133  Sum_probs=90.2

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE--EEEECCCCC
Q ss_conf             011010278772021136532222101356667642014403663122013454235443444434421--576446689
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFK  229 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~--riVld~~l~  229 (364)
                      +.+=+|++.+|-|+. +|+--| ..++..++..++ ..-.+|++|.+|...    |       ....|-  -||++++-.
T Consensus         9 i~~I~A~~~n~~IG~-~~~lPW-~~~eDl~~Fk~~-T~g~~viMGrkT~es----l-------~~~l~~R~~iVls~~~~   74 (168)
T 3jwk_A            9 VSFMVAMDENRVIGK-DNNLPW-RLPSELQYVKKT-TMGHPLIMGRKNYEA----I-------GRPLPGRRNIIVTRNEG   74 (168)
T ss_dssp             EEEEEEEETTCEEEB-TTBCSC-CCHHHHHHHHHH-HTTSCEEEEHHHHHH----H-------CSCCTTSCEEEECSCTT
T ss_pred             EEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCHHHH----H-------HHCCCCCEEEEECCCCC
T ss_conf             999999989997728-997156-789999999998-289809995624465----6-------42589966898337765


Q ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf             98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r  230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD  309 (364)
Q Consensus       230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD  309 (364)
                      ..                              ..++.+.    .++.++++..  ...+.++|=||+.+..+|+.  ++|
T Consensus        75 ~~------------------------------~~~~~~~----~~~~~~~~~~--~~~~~i~ViGG~~iY~~~l~--~~d  116 (168)
T 3jwk_A           75 YH------------------------------VEGCEVA----HSVEEVFELC--KNEEEIFIFGGAQIFDLFLP--YVD  116 (168)
T ss_dssp             CC------------------------------CTTCEEE----SSHHHHHHHT--TTCSEEEEEECHHHHHHHGG--GCC
T ss_pred             CC------------------------------CCCCEEE----ECHHHHHHHH--HCCCCEEEECHHHHHHHHHH--HCC
T ss_conf             36------------------------------7994897----2289999984--16775399872999998887--699


Q ss_pred             EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEEC--C----C-EEEEEEECC
Q ss_conf             99999607432688752333454544464054468867--9----3-699995074
Q gi|254780348|r  310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG--S----D-VCLEYIGKN  358 (364)
Q Consensus       310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig--~----D-v~~~y~~k~  358 (364)
                      +++++.-+....++.   ++... ....|.++..+..-  +    + .+.+|.||+
T Consensus       117 ~i~lT~I~~~~~gD~---~FP~~-d~~~~~~~~~~~~~~~e~n~~~y~f~~y~Rk~  168 (168)
T 3jwk_A          117 KLYITKIHHAFEGDT---FFPEM-DMTNWKEVFVEKGLTDEKNPYTYYYHVYEKQQ  168 (168)
T ss_dssp             EEEEEEESSCCCCSE---ECCCC-CCTTEEEEEEEECCCBTTBCSCEEEEEEEECC
T ss_pred             EEEEEEECCCCCCCE---ECCCC-CHHHCEEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf             999998788526777---77988-85898999987234467899668999999579


No 37 
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A*
Probab=97.61  E-value=0.00037  Score=46.87  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=82.0

Q ss_pred             CCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE
Q ss_conf             342220110102787720211365322221013566676420------14403663122013454235443444434421
Q gi|254780348|r  147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM  220 (364)
Q Consensus       147 ~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~  220 (364)
                      .+.|-|.+-.|++-|+-|.. +|+--| .-++..++..++-.      .-.+|++|.+|...        ++.....-|-
T Consensus         2 ~~~p~i~iIaA~~~n~gIG~-~g~LPW-~l~~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eS--------ip~~~rPLp~   71 (227)
T 3cse_A            2 SKVPVVGIVAALLPEMGIGF-QGNLPW-RLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWES--------IPQKFRPLPK   71 (227)
T ss_dssp             -CCCEEEEEEEETTTTEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTT
T ss_pred             CCCCEEEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCEECC--------CCCCCCCCCC
T ss_conf             98976999999889996828-992467-7989999999985677656789389995670022--------7755677899


Q ss_pred             --EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEC
Q ss_conf             --576446689980221003444670798546554210110022322222333222788999986-----0799699981
Q gi|254780348|r  221 --RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLLVE  293 (364)
Q Consensus       221 --riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~-----~~gi~~iLVE  293 (364)
                        -||++++......     .                     ...++.+    ..++.+++..|.     ..++..|+|=
T Consensus        72 R~niVlSr~~~~~~~-----~---------------------~~~~~~~----~~sl~~al~~l~~~~~~~~~~~~IfVI  121 (227)
T 3cse_A           72 RINVVVSRSFDGELR-----K---------------------VEDGIYH----SNSLRNCLTALQSSLANENKIERIYII  121 (227)
T ss_dssp             SEEEEECTTSSSSCE-----E---------------------EETTEEE----ESCHHHHHHHHTCHHHHTTCEEEEEEC
T ss_pred             CEEEEEECCCCCCCC-----C---------------------CCCCEEE----ECCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             748997247772223-----5---------------------7686699----374899999988888860799729998


Q ss_pred             CHHHHHHHHHHCCCCCEEEEEEECEEE
Q ss_conf             238999999978898899999607432
Q gi|254780348|r  294 GGAAVAHSFINSRLVDSIILYRSQIVI  320 (364)
Q Consensus       294 GG~~l~~sfl~~~LvDEl~ifiaP~il  320 (364)
                      ||+++..+||  .++|+++++.-....
T Consensus       122 GG~~IY~~~l--~~~d~i~lT~I~~~~  146 (227)
T 3cse_A          122 GGGEIYRQSM--DLADHWLITKIMPLP  146 (227)
T ss_dssp             CCHHHHHHHT--TTCSEEEEEEEEECT
T ss_pred             CCHHHHHHHH--HHCCEEEEEEEEECC
T ss_conf             9999999998--668989999994016


No 38 
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=97.43  E-value=0.0013  Score=43.28  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=71.1

Q ss_pred             HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCC
Q ss_conf             0110102787720211365322221013566676420144036631220134542354434444344215--76446689
Q gi|254780348|r  152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFK  229 (364)
Q Consensus       152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~  229 (364)
                      |.+=+|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|...        ++.....-|-|  ||++++.+
T Consensus         2 i~lI~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~vIMGrkT~eS--------ip~~~rPLp~R~niVlsr~~~   70 (159)
T 1df7_A            2 VGLIWAQATSGVIGR-GGDIPW-RLPEDQAHFREI-TMGHTIVMGRRTWDS--------LPAKVRPLPGRRNVVLSRQAD   70 (159)
T ss_dssp             EEEEEEEETTSEEEB-TTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH--------SCGGGSSCTTSEEEEECSSTT
T ss_pred             EEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCEECC--------CCCCCCCCCCCEEEEEECCCC
T ss_conf             599999889997618-996176-788999999996-379829997870056--------698763699965999716644


Q ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC
Q ss_conf             98022100344467079854655421011002232222233322278899998607996999812389999999788988
Q gi|254780348|r  230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD  309 (364)
Q Consensus       230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD  309 (364)
                      ...                              .++.++    .++++.+      ....++|=||+++..+++.  ++|
T Consensus        71 ~~~------------------------------~~~~v~----~sl~~al------~~~~i~ViGG~~iY~~~l~--~~~  108 (159)
T 1df7_A           71 FMA------------------------------SGAEVV----GSLEEAL------TSPETWVIGGGQVYALALP--YAT  108 (159)
T ss_dssp             CCC------------------------------TTSEEE----SSHHHHT------TSSSEEECCCHHHHHHHGG--GCS
T ss_pred             CCC------------------------------CCCEEC----CCHHHHH------CCCCEEEECHHHHHHHHHH--HCC
T ss_conf             367------------------------------886730----6998851------3675899644899999987--689


Q ss_pred             EEEEEEECEEEC
Q ss_conf             999996074326
Q gi|254780348|r  310 SIILYRSQIVIG  321 (364)
Q Consensus       310 El~ifiaP~ilG  321 (364)
                      +++++.-...+.
T Consensus       109 ~i~lT~I~~~~~  120 (159)
T 1df7_A          109 RCEVTEVDIGLP  120 (159)
T ss_dssp             EEEEEEECCCCC
T ss_pred             EEEEEEEEECCC
T ss_conf             999999950278


No 39 
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=97.40  E-value=0.0014  Score=43.10  Aligned_cols=94  Identities=28%  Similarity=0.413  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC--CCCCHHHHHHHHHHCCHH-CC-CEEE-E
Q ss_conf             968778999999999999870882188896479998-6998999984388--769848999999730010-69-8899-9
Q gi|254780348|r    1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCPHAEVQALEEAGEEA-RG-ATAY-V   74 (364)
Q Consensus         1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~--~G~~HAE~~al~~~~~~~-~~-atly-v   74 (364)
                      ||+|..|+..+.+|.....  ....+-|-.|||.+. +||+|+ +|....  .++-|||..|+-.+-..- +. ..++ |
T Consensus         1 m~lt~~~~~Li~~A~~~~~--~~~~~s~f~VgAa~~~~~G~i~-~G~NvEN~s~glCAEr~Ai~~a~~~~~~~~~~i~~v   77 (130)
T 2z3g_A            1 MPLSQEESTLIERATATIN--SIPISEDYSVASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAI   77 (130)
T ss_dssp             -CCCHHHHHHHHHHHHHHH--HSCCCSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHH--HCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             9989899999999999998--4598789958999998999999-887533898874453678876411246761799999


Q ss_pred             ------ECCCCCCCCCCCHHHHHHHHCCCC-EEEEE
Q ss_conf             ------057321157521055565301343-24663
Q gi|254780348|r   75 ------TLEPCSHYGRSPPCAQFIIECGIR-RVVVC  103 (364)
Q Consensus        75 ------tLEPC~h~GktppC~~~ii~~gIk-~Vvi~  103 (364)
                            .+-||      +.|-+.|.+.+-. +|++.
T Consensus        78 ~~~~~~~~~PC------G~CRQ~l~E~~~~~~v~~~  107 (130)
T 2z3g_A           78 GNENRGILSPC------GRCRQVLLDLHPGIKAIVK  107 (130)
T ss_dssp             ETTTTEEECCC------HHHHHHHHHHCTTCEEEEE
T ss_pred             ECCCCCCCCCC------HHHHHHHHHHCCCCEEEEE
T ss_conf             27898677986------8899999997899779999


No 40 
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=97.25  E-value=0.0024  Score=41.41  Aligned_cols=127  Identities=15%  Similarity=0.192  Sum_probs=71.7

Q ss_pred             CCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC------CCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             22201101027877202113653222210135666764201------440366312201345423544344443442157
Q gi|254780348|r  149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ------SDAILVGIGTVLADDPELTCRLNGLQEHSPMRI  222 (364)
Q Consensus       149 rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~------~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~ri  222 (364)
                      ++..++-.|+..|+=|.. +|+--| .-++..++..++-..      -.+|++|.+|...= |.   | + ++++  +-|
T Consensus         4 ~~~~iiVaa~~~n~gIG~-~g~LPW-~lp~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eSi-p~---r-P-Lp~R--~nI   73 (521)
T 3hj3_A            4 KNVSIVVAASVLSSGIGI-NGQLPW-SISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSI-GR---R-P-LKNR--IIV   73 (521)
T ss_dssp             CCEEEEEEEETTTCEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGG-TT---C-C-CTTS--EEE
T ss_pred             CCCEEEEEEECCCCEECC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHC-CC---C-C-CCCC--EEE
T ss_conf             872899998558981727-992378-79899999999858999767874599847625418-95---5-6-9779--699


Q ss_pred             EECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCHHHHHHH
Q ss_conf             64466899802210034446707985465542101100223222223332227889999860-79969998123899999
Q gi|254780348|r  223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHS  301 (364)
Q Consensus       223 Vld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~-~gi~~iLVEGG~~l~~s  301 (364)
                      |++++..-..        ....++++.                        +++++++.+.+ ..+..|+|=||+++...
T Consensus        74 VlSr~~~~~~--------~~~~v~~~~------------------------sl~~al~~~~~~~~~~~ifVIGG~~IY~~  121 (521)
T 3hj3_A           74 VISSSLPQDE--------ADPNVVVFR------------------------NLEDSIENLMNDDSIENIFVCGGESIYRD  121 (521)
T ss_dssp             EECSSSCCCC--------SCSSEEEES------------------------STTTTTTSSSSCTTEEEEEEEECHHHHHH
T ss_pred             EECCCCCCCC--------CCCCEEEEC------------------------CHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf             9999894224--------799989989------------------------99999999874677775999868999998


Q ss_pred             HHHCCCCCEEEEEEEC
Q ss_conf             9978898899999607
Q gi|254780348|r  302 FINSRLVDSIILYRSQ  317 (364)
Q Consensus       302 fl~~~LvDEl~ifiaP  317 (364)
                      +|...++|+++++.-.
T Consensus       122 ~L~~~~~d~iylT~I~  137 (521)
T 3hj3_A          122 ALKDNFVDRIYLTRVA  137 (521)
T ss_dssp             HHHTTCCSEEEEEEEC
T ss_pred             HCCCCCCCEEEEEEEE
T ss_conf             6575667889999980


No 41 
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A*
Probab=97.13  E-value=0.00086  Score=44.42  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             CCHHHHH-HCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE-
Q ss_conf             2220110-102787720211365322221013566676420------14403663122013454235443444434421-
Q gi|254780348|r  149 RSHITLK-IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM-  220 (364)
Q Consensus       149 rP~V~lK-~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~-  220 (364)
                      +|-+++= .|++-|+-|.. +|+--| .-++..++..++-.      .-.+|++|.+|...        ++.....-|- 
T Consensus         3 ~p~i~~ivaA~~~n~gIG~-~~~LPW-~l~~Dl~~Fk~~T~~~~~~~~~n~vIMGRkT~eS--------ip~~~rPLp~R   72 (192)
T 1aoe_A            3 KPNVAIIVAALKPALGIGY-KGKMPW-RLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWES--------IPQKFRPLPDR   72 (192)
T ss_dssp             SCCEEEEEEEETTTTEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTTS
T ss_pred             CCCEEEEEEEECCCCEECC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH--------CCCCCCCCCCC
T ss_conf             9856999999579972948-991257-5989999999985677766778189996774664--------77344467997


Q ss_pred             -EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH
Q ss_conf             -5764466899802210034446707985465542101100223222223332227889999860799699981238999
Q gi|254780348|r  221 -RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA  299 (364)
Q Consensus       221 -riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~  299 (364)
                       -||++++..-.                            ....++.+    ..+++++++.+.  +...|+|=||+++.
T Consensus        73 ~niVlSr~~~~~----------------------------~~~~~v~~----~~s~~~al~~~~--~~~~i~ViGG~~IY  118 (192)
T 1aoe_A           73 LNIILSRSYENE----------------------------IIDDNIIH----ASSIESSLNLVS--DVERVFIIGGAEIY  118 (192)
T ss_dssp             EEEEECTTCCCE----------------------------EEETTEEE----ESSHHHHHHTCC--SEEEEEECCCHHHH
T ss_pred             EEEEEECCCCCC----------------------------CCCCEEEE----ECCHHHHHHHHC--CCCEEEEECCHHHH
T ss_conf             589996256345----------------------------45430477----488999998852--89629998899999


Q ss_pred             HHHHHCCCCCEEEEEEEC
Q ss_conf             999978898899999607
Q gi|254780348|r  300 HSFINSRLVDSIILYRSQ  317 (364)
Q Consensus       300 ~sfl~~~LvDEl~ifiaP  317 (364)
                      .+||+..++|+++++.-.
T Consensus       119 ~~~l~~~~~d~l~iT~I~  136 (192)
T 1aoe_A          119 NELINNSLVSHLLITEIE  136 (192)
T ss_dssp             HHHTTSTTEEEEEEEEEE
T ss_pred             HHHHCCCCCCEEEEEEEE
T ss_conf             998456578989999995


No 42 
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ...
Probab=97.11  E-value=0.0029  Score=40.85  Aligned_cols=149  Identities=13%  Similarity=0.148  Sum_probs=86.4

Q ss_pred             HHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf             11010278772021136532222101356667642014403663122013454235443444434421576446689980
Q gi|254780348|r  153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL  232 (364)
Q Consensus       153 ~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~  232 (364)
                      .+=.|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|...    |.-.++   ++  .-||++++-....
T Consensus         4 ~lI~A~~~~~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~vimGr~T~~s----~~~~l~---~R--~niVls~~~~~~~   71 (159)
T 2w9h_A            4 SILVAHDLQRVIGF-ENQLPW-HLPNDLKHVKKL-STGHTLVMGRKTFES----IGKPLP---NR--RNVVLTSDTSFNV   71 (159)
T ss_dssp             EEEEEECTTCEEEB-TTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----HCSCCT---TS--EEEEECSCTTCCC
T ss_pred             EEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCHH----HHHCCC---CC--EEEEEEECCCCCC
T ss_conf             99999999997737-996376-488999999985-579739996761343----111348---97--5899971322345


Q ss_pred             HHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEE
Q ss_conf             22100344467079854655421011002232222233322278899998607996999812389999999788988999
Q gi|254780348|r  233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII  312 (364)
Q Consensus       233 ~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~  312 (364)
                                ....++.                        +++++++     -...|+|=||+.+...|+.  .+|+++
T Consensus        72 ----------~~~~~~~------------------------s~e~~~~-----~~~~i~ViGG~~iY~~~l~--~~d~i~  110 (159)
T 2w9h_A           72 ----------EGVDVIH------------------------SIEDIYQ-----LPGHVFIFGGQTLFEEMID--KVDDMY  110 (159)
T ss_dssp             ----------TTCEEEC------------------------SGGGGGG-----SCSCEEEEECHHHHHHHTT--TCSEEE
T ss_pred             ----------CCCCCCC------------------------CHHHHHH-----CCCEEEEECCHHHHHHHHH--HCCEEE
T ss_conf             ----------6643536------------------------6889752-----1220689766899999886--589999


Q ss_pred             EEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEEC----CC---EEEEEEECC
Q ss_conf             99607432688752333454544464054468867----93---699995074
Q gi|254780348|r  313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG----SD---VCLEYIGKN  358 (364)
Q Consensus       313 ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig----~D---v~~~y~~k~  358 (364)
                      ++.-+...-++ .-.|  . .....|++++.....    ++   .+.+|.||+
T Consensus       111 lT~I~~~~~gD-~ffP--~-~~~~~~~~~~~~~~~~~e~n~~~y~f~~y~Rkk  159 (159)
T 2w9h_A          111 ITVIEGKFRGD-TFFP--P-YTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK  159 (159)
T ss_dssp             EEEECSCCCCS-EECC--C-CCTTTEEEEEEEECCCBTTBCSCEEEEEEEEC-
T ss_pred             EEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEEECC
T ss_conf             99817762677-7889--9-996899999989866577899878999999779


No 43 
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=96.69  E-value=0.012  Score=36.78  Aligned_cols=92  Identities=24%  Similarity=0.420  Sum_probs=56.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEEE-ECCEEEEEEECC----CCCCCHHHHHHHHHH---CCHHCC
Q ss_conf             96877899999999999987088---2188896479998-699899998438----876984899999973---001069
Q gi|254780348|r    1 MPVSSFDARFMSAALRFSRWHVG---LTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEA---GEEARG   69 (364)
Q Consensus         1 m~~~~~d~~~m~~a~~~a~~~~g---~t~pNP~Vg~viv-~~g~ii~~g~~~----~~G~~HAE~~al~~~---~~~~~~   69 (364)
                      |++..++.+-++.-++.|.+...   .-+-|=.|||.+. +||+|+ .|...    ...+-+||..||-++   |.+..-
T Consensus         1 ~~~~~~~~~~~~~L~~~a~~a~~~ayaPYS~F~VGAAllt~~G~i~-~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~   79 (142)
T 1r5t_A            1 MKVGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGW   79 (142)
T ss_dssp             -CCTTSCHHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             9756788899999999999999718088568937899996899999-846522566666649999999999980898633


Q ss_pred             CEEEEE-------CCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             889990-------573211575210555653013432
Q gi|254780348|r   70 ATAYVT-------LEPCSHYGRSPPCAQFIIECGIRR   99 (364)
Q Consensus        70 atlyvt-------LEPC~h~GktppC~~~ii~~gIk~   99 (364)
                      ..+.+.       .-||      +.|-+.|.+.+-+.
T Consensus        80 ~~~v~~~~~~~~~~sPC------G~CRQ~l~Ef~~~~  110 (142)
T 1r5t_A           80 KCMVICGDSEDQCVSPC------GVCRQFINEFVVKD  110 (142)
T ss_dssp             CEEEEEESCSSSCCCCC------HHHHHHHHTTSCTT
T ss_pred             EEEEEEECCCCCCCCCC------HHHHHHHHHHCCCC
T ss_conf             89999605788878987------88999999957998


No 44 
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=96.48  E-value=0.0037  Score=40.18  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             HHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE
Q ss_conf             110102787720211365322221013566676420------------14403663122013454235443444434421
Q gi|254780348|r  153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM  220 (364)
Q Consensus       153 ~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~  220 (364)
                      .+=.|++.+|-|.. +|+--| .-++..++..++-.            +..+|++|.+|...        ++....+-|-
T Consensus        24 slIvA~~~n~gIG~-~g~LPW-~lp~Dmk~Fk~~T~g~~~~~~~~~~~k~n~VIMGRkT~eS--------iP~~~RPLp~   93 (521)
T 3irm_A           24 SLVVAVDEHGGIGD-GRSIPW-NVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDS--------IPPKFRPLPG   93 (521)
T ss_dssp             EEEEEEETTSEEES-SSCCCC-CCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHT--------SCGGGCSCTT
T ss_pred             EEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHH--------CCCCCCCCCC
T ss_conf             89999989997568-990157-4989999999986799865555556786179941765877--------7978898967


Q ss_pred             E--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCEEEECC
Q ss_conf             5--7644668998022100344467079854655421011002232222233322278899998607----996999812
Q gi|254780348|r  221 R--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEG  294 (364)
Q Consensus       221 r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~----gi~~iLVEG  294 (364)
                      |  |||+++........-..              ...........++.+    ..+++++++.+.+.    ++..|+|=|
T Consensus        94 R~NIVLSr~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v----~~sle~al~~~~~~~~~~~~~~IfVIG  155 (521)
T 3irm_A           94 RLNVVLSSTLTTQHLLDGLP--------------DEEKRNLHADSIVAV----NGGLEQALRLLASPNYTPSIETVYCIG  155 (521)
T ss_dssp             EEEEEECSSCCHHHHHHTSS--------------SHHHHHHHGGGEEEE----SSCHHHHHHHHTSTTTTTTEEEEEECC
T ss_pred             CCEEEECCCCCCCCCCCCCC--------------CCCCCCCCCCCCEEE----ECCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             95899946786233443333--------------211123467774698----589999999986542036786399925


Q ss_pred             HHHHHHHHHHC---CCCCEEEEEEECE-EECCC
Q ss_conf             38999999978---8988999996074-32688
Q gi|254780348|r  295 GAAVAHSFINS---RLVDSIILYRSQI-VIGEG  323 (364)
Q Consensus       295 G~~l~~sfl~~---~LvDEl~ifiaP~-ilG~~  323 (364)
                      |+++...||+.   .++|+++++.-.. ..+.+
T Consensus       156 G~~IY~~aL~~~~~~~~d~iylT~I~~~~~~~d  188 (521)
T 3irm_A          156 GGSVYAEALRPPCVHLLQAIYRTTIRASESSCS  188 (521)
T ss_dssp             CHHHHHHHTSTTGGGGEEEEEEEEECCSSCCCS
T ss_pred             CHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCE
T ss_conf             799999986351223465699998616776971


No 45 
>2fr5_A Cytidine deaminase; zinc, tetrahydrouridine, protein- inhibitor complex, alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=96.44  E-value=0.016  Score=35.81  Aligned_cols=81  Identities=23%  Similarity=0.291  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCH---HCCCEEEEE-----
Q ss_conf             9999999999870882188896479998-6998999984388----76984899999973001---069889990-----
Q gi|254780348|r    9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEE---ARGATAYVT-----   75 (364)
Q Consensus         9 ~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~---~~~atlyvt-----   75 (364)
                      +.++.| ..|++....-+-|=.|||.+. +||+|+ .|.+..    ..+-|||..||-.|-..   ...+...++     
T Consensus        17 ~L~~~A-~~a~~~ayaPYS~F~VGAAll~~dG~i~-~G~NvEna~~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~~~   94 (146)
T 2fr5_A           17 RLLLSS-REAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEE   94 (146)
T ss_dssp             HHHHHH-HHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSS
T ss_pred             HHHHHH-HHHHHCCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
T ss_conf             999999-9999718298669946699996899999-99965576665662588899999887278863799998257888


Q ss_pred             -CCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             -5732115752105556530134
Q gi|254780348|r   76 -LEPCSHYGRSPPCAQFIIECGI   97 (364)
Q Consensus        76 -LEPC~h~GktppC~~~ii~~gI   97 (364)
                       .-||      +.|-+.|.+.+-
T Consensus        95 ~~~PC------G~CRQ~l~E~~~  111 (146)
T 2fr5_A           95 FISPC------GACRQVMREFGT  111 (146)
T ss_dssp             CCCCC------HHHHHHHHHTCS
T ss_pred             CCCCC------HHHHHHHHHHCC
T ss_conf             88987------899999997399


No 46 
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=96.42  E-value=0.014  Score=36.28  Aligned_cols=96  Identities=27%  Similarity=0.349  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCC-CEEEE
Q ss_conf             778999999999999870882188896479998-69989999843887----6984899999973---001069-88999
Q gi|254780348|r    4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARG-ATAYV   74 (364)
Q Consensus         4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~-atlyv   74 (364)
                      .-||.+=+-.+...|++....-.-|=.|||++. +||+|. .|.+...    .+-|||..||-++   |.+... ..++|
T Consensus         7 ~~m~~~~L~~~A~~a~~~ayaPyS~f~VGAAl~~~~G~i~-~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~~~~~~~iav   85 (138)
T 3dmo_A            7 HHMTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAV   85 (138)
T ss_dssp             TTCCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             5639999999999999838198568858999997899999-899670565666647888999999974887553699999


Q ss_pred             -E-----CCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             -0-----5732115752105556530134324663010
Q gi|254780348|r   75 -T-----LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD  106 (364)
Q Consensus        75 -t-----LEPC~h~GktppC~~~ii~~gIk~Vvi~~~D  106 (364)
                       +     +-||      +.|.+.|.+.+=..+.|-..+
T Consensus        86 ~~~~~~~~sPC------G~CRQ~l~E~~~~~~~i~l~~  117 (138)
T 3dmo_A           86 VGETHGPIAPC------GACRQVMIELGKPTLEVVLTN  117 (138)
T ss_dssp             EESCSSSCCCC------HHHHHHHHHHHCTTCEEEEEC
T ss_pred             ECCCCCCCCCC------HHHHHHHHHHCCCCCEEEEEC
T ss_conf             84899867989------889999999679994899998


No 47 
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, PSI-2, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=95.87  E-value=0.029  Score=34.12  Aligned_cols=87  Identities=16%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCHH--CCCEEEEE---
Q ss_conf             8999999999999870882188896479998-6998999984388----769848999999730010--69889990---
Q gi|254780348|r    6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA--RGATAYVT---   75 (364)
Q Consensus         6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~~--~~atlyvt---   75 (364)
                      .|+..++.|.+..++.--   -|=.|||.+. +||+|+ .|....    ..+-+||..||-+|-..-  .-.+++|+   
T Consensus         3 ~~~~L~~~A~~~~~~ay~---S~f~VGAAl~~~dG~i~-~G~NvEnas~~~~~CAEr~Ai~~a~s~g~~~~~~i~v~~~~   78 (142)
T 3b8f_A            3 IEQQLYDVVKQLIEQRYP---NDWGGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLAREN   78 (142)
T ss_dssp             HHHHHHHHHHHHHHHHCS---SSCEEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCCEE-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             799999999999997086---78976999994899999-98701477777543288899999997899746999999638


Q ss_pred             -------CCCCCCCCCCCHHHHHHHHCCCC-EEEE
Q ss_conf             -------57321157521055565301343-2466
Q gi|254780348|r   76 -------LEPCSHYGRSPPCAQFIIECGIR-RVVV  102 (364)
Q Consensus        76 -------LEPC~h~GktppC~~~ii~~gIk-~Vvi  102 (364)
                             +-||      +.|-+.|.+.+.. +|++
T Consensus        79 ~~~~~~~~~PC------G~CRQ~l~Ef~~~~~v~~  107 (142)
T 3b8f_A           79 EHSELKVLSPC------GVCQERLFYWGPEVQCAI  107 (142)
T ss_dssp             TTSCCEECCCC------HHHHHHHGGGCTTCEEEC
T ss_pred             CCCCCCCCCCC------HHHHHHHHHHCCCCEEEE
T ss_conf             98866456997------889999998699968999


No 48 
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=95.80  E-value=0.042  Score=33.07  Aligned_cols=92  Identities=23%  Similarity=0.309  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCHH--CCCEEEEEC---
Q ss_conf             999999999999870882188896479998-6998999984388----769848999999730010--698899905---
Q gi|254780348|r    7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA--RGATAYVTL---   76 (364)
Q Consensus         7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~~--~~atlyvtL---   76 (364)
                      .+..++.|++..++. ..-.-|=.|||.+. ++|+|+ .|....    ..+-|||..||-++-..-  +-.+++|.-   
T Consensus        12 ~~~L~~~A~~a~~~a-yaPYS~f~VGAAl~~~~G~i~-~G~NvEn~s~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~   89 (141)
T 2d30_A           12 SKQLIQEAIEARKQA-YVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTK   89 (141)
T ss_dssp             HHHHHHHHHHHHTTC-BCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCS
T ss_pred             HHHHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf             999999999999648-488678938999997899999-999552677775306899989999854886379999983887


Q ss_pred             ---CCCCCCCCCCHHHHHHHHCC--CCEEEEECCC
Q ss_conf             ---73211575210555653013--4324663010
Q gi|254780348|r   77 ---EPCSHYGRSPPCAQFIIECG--IRRVVVCVDD  106 (364)
Q Consensus        77 ---EPC~h~GktppC~~~ii~~g--Ik~Vvi~~~D  106 (364)
                         -||      +.|-+.|.+.+  --+|++...|
T Consensus        90 ~~~sPC------G~CRQ~l~E~~~~~~~v~~~~~~  118 (141)
T 2d30_A           90 RPVPPC------GACRQVMVELCKQDTKVYLSNLH  118 (141)
T ss_dssp             SCCCCC------HHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CCCCCC------HHHHHHHHHHCCCCCEEEEECCC
T ss_conf             667966------88999999866898389998799


No 49 
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=95.43  E-value=0.022  Score=34.94  Aligned_cols=118  Identities=20%  Similarity=0.354  Sum_probs=74.7

Q ss_pred             CCCEEEEEEE--CC--E-EEEEEECC-CCCCCHHHHHHHHHHCCHHC-----CCEEEEECCCCCCCCCCCHHHHHHHHC-
Q ss_conf             8964799986--99--8-99998438-87698489999997300106-----988999057321157521055565301-
Q gi|254780348|r   28 NPSVACLIVK--DG--I-VIGRGVTA-YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIEC-   95 (364)
Q Consensus        28 NP~Vg~viv~--~g--~-ii~~g~~~-~~G~~HAE~~al~~~~~~~~-----~atlyvtLEPC~h~GktppC~~~ii~~-   95 (364)
                      |-.-=|-.|+  ++  . -..+|+-. +.++-|||+.=|......+.     .-|.|+|=-||.      .||+.|.+. 
T Consensus        32 ~~tyLCY~V~~~~~~~~~~~~~G~~~n~~~~~HAE~~Fl~~i~~~l~p~~~y~VTwy~SWSPC~------~CA~~va~FL  105 (190)
T 2nyt_A           32 NKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA------ACADRIIKTL  105 (190)
T ss_dssp             CCEEEEEEEEEEETTTEEEEEEEEEEESSCSSCHHHHHHHHTSCCCCTTCEEEEEEEEEECCCH------HHHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHH------HHHHHHHHHH
T ss_conf             8668999995468998766765783588887439999999998624977549999997449649------9999999999


Q ss_pred             ----CCCEEEEECC-----CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCC-CCCCHHHH
Q ss_conf             ----3432466301-----01211012433110018988962221012320012222011-34222011
Q gi|254780348|r   96 ----GIRRVVVCVD-----DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITL  154 (364)
Q Consensus        96 ----gIk~Vvi~~~-----DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~-~~rP~V~l  154 (364)
                          .++=.++++.     ||+-   -+|...|.++|+.|..+--+|...-=+-|..... .++||--.
T Consensus       106 ~~~~~v~L~If~sRLY~~~~~~~---q~GLr~L~~aG~~v~iM~~~eF~~CW~nFVd~~~~~g~~F~PW  171 (190)
T 2nyt_A          106 SKTKNLRLLILVGRLFMWEEPEI---QAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW  171 (190)
T ss_dssp             HHCTTEEEEEEEEECSSTTSHHH---HHHHHHHHHTTCEEEECCHHHHHHHHHHHBCCCC----CCCCC
T ss_pred             HHCCCEEEEEEHHHHHHHCCHHH---HHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf             87899079988635135268779---9999999987996896083899999999847766789986875


No 50 
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=95.40  E-value=0.061  Score=31.94  Aligned_cols=91  Identities=27%  Similarity=0.415  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHH---CCHHCCCEEEEE---
Q ss_conf             999999999999870882188896479998-6998999984388----76984899999973---001069889990---
Q gi|254780348|r    7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA---GEEARGATAYVT---   75 (364)
Q Consensus         7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~---~~~~~~atlyvt---   75 (364)
                      ++..|+.|++..+++. .-.-|=.|||++. ++|+|+ .|+...    ..+-+||..|+-++   ++.... +++|.   
T Consensus         3 ~~~L~~~A~~a~~~ay-aPyS~f~VGAa~~~~~G~iy-~G~NvE~~~~~~~~cAEr~Ai~~a~~~g~~~~~-~i~v~~~~   79 (136)
T 1uwz_A            3 RQELITEALKARDMAY-APYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQ-MLAVAADT   79 (136)
T ss_dssp             HHHHHHHHHHHHTTCB-CTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEE-EEEEEESC
T ss_pred             HHHHHHHHHHHHHHCC-CCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCE-EEEEEECC
T ss_conf             8999999999997274-97568928999996899999-898051665556412888888787751677522-89999667


Q ss_pred             ---CCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             ---5732115752105556530134324663010
Q gi|254780348|r   76 ---LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD  106 (364)
Q Consensus        76 ---LEPC~h~GktppC~~~ii~~gIk~Vvi~~~D  106 (364)
                         +-||-      .|-+.|.+.+-+.+.|-..+
T Consensus        80 ~~~~sPCG------~CRQ~l~E~~~~~~~i~~~~  107 (136)
T 1uwz_A           80 PGPVSPCG------ACRQVISELCTKDVIVVLTN  107 (136)
T ss_dssp             SSSCCCCH------HHHHHHHHHSCTTCEEEEEC
T ss_pred             CCCCCCCH------HHHHHHHHHCCCCCEEEEEC
T ss_conf             98767488------99999998468982899988


No 51 
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=95.30  E-value=0.074  Score=31.39  Aligned_cols=138  Identities=12%  Similarity=-0.009  Sum_probs=65.4

Q ss_pred             CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCCCCHHH
Q ss_conf             02787720211365322221013566676420144036631220134542354434444344215--7644668998022
Q gi|254780348|r  157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDS  234 (364)
Q Consensus       157 A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~i~~~~  234 (364)
                      |.+.|+-|. .+|+--|---++..++..++ ..-.+|++|.+|...    |       ...-|-|  ||++++.+-... 
T Consensus        15 ~~~~~~~IG-~~g~LPW~~l~~Dm~~Fk~~-T~~~~vIMGrkT~eS----l-------p~pLp~R~nIVlSr~~~~~~~-   80 (193)
T 1juv_A           15 DGFNELAFG-LGDGLPWGRVKKDLQNFKAR-TEGTIMIMGAKTFQS----L-------PTLLPGRSHIVVCDLARDYPV-   80 (193)
T ss_dssp             TSCEEEEEE-BTTBCTTCCCHHHHHHHHHH-HTTSEEEEEHHHHHT----C-------SSCCTTSCEEEECCTTSCCCC-
T ss_pred             CCCCCCEEC-CCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCHHH----H-------HHCCCCCEEEEECCCCCCCCC-
T ss_conf             224586471-79948884698999999998-289859997772154----3-------004899609998578755545-


Q ss_pred             HHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEE
Q ss_conf             10034446707985465542101100223222223332227889999860799699981238999999978898899999
Q gi|254780348|r  235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY  314 (364)
Q Consensus       235 ~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~if  314 (364)
                        ..+...  ..++.+-..  ..... ........    ...++ ..........|+|=||+.+..++|.  ++|+++++
T Consensus        81 --~~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~----~~~~~-~~~~~~~~~~v~IiGG~~IY~~~l~--~~d~i~lT  146 (193)
T 1juv_A           81 --TKDGDL--AHFYITWEQ--YITYI-SGGEIQVS----SPNAP-FETMLDQNSKVSVIGGPALLYAALP--YADEVVVS  146 (193)
T ss_dssp             --CTTCCC--CSEEECHHH--HHHHH-TTCCEEEE----CTTSS-CEEEECTTSCEEEEECHHHHHHHGG--GCSEEEEE
T ss_pred             --CCCCCC--EEEECCHHH--HHHHH-CCCCEEEC----CHHHH-HHHHHCCCCEEEEECCHHHHHHHHH--HCCEEEEE
T ss_conf             --556662--377368999--99874-25633414----68999-9985368965999769999999986--68999999


Q ss_pred             EECEEECC
Q ss_conf             60743268
Q gi|254780348|r  315 RSQIVIGE  322 (364)
Q Consensus       315 iaP~ilG~  322 (364)
                      .-+.-...
T Consensus       147 ~I~~~~~~  154 (193)
T 1juv_A          147 RIVKRHRV  154 (193)
T ss_dssp             EEEESSCC
T ss_pred             EECCCCCC
T ss_conf             97252356


No 52 
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X
Probab=95.29  E-value=0.055  Score=32.25  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHHCCHHC-C-CEEEEE-----
Q ss_conf             99999999999870882188896479998-69989999843887----698489999997300106-9-889990-----
Q gi|254780348|r    8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEAR-G-ATAYVT-----   75 (364)
Q Consensus         8 ~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~~~~~~-~-atlyvt-----   75 (364)
                      +...+.|++..++. ..-.-|=.|||++. ++|+|+ .|.....    .+-+||..|+..+-.... . ..+.|.     
T Consensus        26 ~~L~~~A~~a~~~A-yaPYS~F~VGAal~t~~G~i~-~G~NvEnas~~~~iCAE~~Ai~~a~s~g~~~~~~i~vv~~~~~  103 (150)
T 3mpz_A           26 NALRSKAIEVSRHA-YAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGG  103 (150)
T ss_dssp             HHHHHHHHHHHTTC-BCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTTSC
T ss_pred             HHHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             99999999999638-487568928799997899999-8984505656666116778999998648874117999946897


Q ss_pred             -CCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             -573211575210555653013432466
Q gi|254780348|r   76 -LEPCSHYGRSPPCAQFIIECGIRRVVV  102 (364)
Q Consensus        76 -LEPC~h~GktppC~~~ii~~gIk~Vvi  102 (364)
                       +-||      +.|-+.|.+.+-.+++|
T Consensus       104 ~~sPC------G~CRQ~l~Ef~~~~~~i  125 (150)
T 3mpz_A          104 VLMPC------GRCRQVLLEHGGPELLI  125 (150)
T ss_dssp             BCCCC------HHHHHHHHHHHCTTCEE
T ss_pred             CCCCC------HHHHHHHHHHCCCCEEE
T ss_conf             24886------87899999858998899


No 53 
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=95.22  E-value=0.095  Score=30.64  Aligned_cols=92  Identities=24%  Similarity=0.404  Sum_probs=72.0

Q ss_pred             CCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf             88896479998699899998438876984899999973001069889990573211575210555653013432466301
Q gi|254780348|r   26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD  105 (364)
Q Consensus        26 ~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~  105 (364)
                      -|.-.|-|.+...|+|++.-   .+-..|||....+.  .+..|-..|||--||-.      |+..+.++|+.-||+--.
T Consensus        19 ipkrtvtaalleggeivave---eaddehaerklvrr--hdvegkvvfvtarpcly------carelaeagvagvvylgr   87 (278)
T 3g8q_A           19 IPKRTVTAALLEGGEIVAVE---EADDEHAERKLVRR--HDVEGKVVFVTARPCLY------CARELAEAGVAGVVYLGR   87 (278)
T ss_dssp             SCCSSCEEEEEETTEEEEEE---ECSSSCHHHHHHHH--SCCTTCEEEESSCCCHH------HHHHHHTTTCCEEEEEEC
T ss_pred             CCHHHHHHHHHCCCEEEEEE---CCCHHHHHHHHHHH--HCCCCEEEEEECCHHHH------HHHHHHHCCCCEEEEECC
T ss_conf             71356469875587089885---04616777766765--05663399997651788------899987555205899615


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf             0121101243311001898896222101
Q gi|254780348|r  106 DPDVRVSGRGLQWLSQKGIIVDRMMESE  133 (364)
Q Consensus       106 DPnp~v~gkGi~~L~~~GI~V~~~~~~~  133 (364)
                           -.|-|--+|...|++|-.+-.+|
T Consensus        88 -----grglgpyylarsgvevvevhpde  110 (278)
T 3g8q_A           88 -----GRGLGPYYLARSGVEVVEVHPDE  110 (278)
T ss_dssp             -----SSCCHHHHHHTTTCEEEEEEECS
T ss_pred             -----CCCCCCEEEECCCCEEEEECCCC
T ss_conf             -----78777321311683799957998


No 54 
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=95.12  E-value=0.19  Score=28.57  Aligned_cols=84  Identities=25%  Similarity=0.394  Sum_probs=47.8

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEEE-ECCEEEEEEECC--CCCCCHHHHHHHHHHC---CHHCCCEEEEE
Q ss_conf             877899999999999987088218889-6479998-699899998438--8769848999999730---01069889990
Q gi|254780348|r    3 VSSFDARFMSAALRFSRWHVGLTSTNP-SVACLIV-KDGIVIGRGVTA--YGGCPHAEVQALEEAG---EEARGATAYVT   75 (364)
Q Consensus         3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP-~Vg~viv-~~g~ii~~g~~~--~~G~~HAE~~al~~~~---~~~~~atlyvt   75 (364)
                      +...+...|+.|......   ...-|= +|||++. +||+|+ .|...  ...+.+||..||-++-   +....+.+-|+
T Consensus        27 L~~~~~el~~~A~a~~~~---~PyS~f~~VGAAllt~dG~I~-tG~NVEN~s~glCAEr~Ai~~a~~~G~~~i~~iv~V~  102 (158)
T 3oj6_A           27 LSAAGQNLIDTATSVING---IPVSDFYSVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAIA  102 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHT---SCCCSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCC---CCCCCCCEEEEEEEECCCCEE-EEECCCCCCCCCCCCEEEEEEEHHCCCCCEEEEEEEE
T ss_conf             569999999999998715---997789628999993899999-9771048886654253334541022885368999997


Q ss_pred             ------CCCCCCCCCCCHHHHHHHHCC
Q ss_conf             ------573211575210555653013
Q gi|254780348|r   76 ------LEPCSHYGRSPPCAQFIIECG   96 (364)
Q Consensus        76 ------LEPC~h~GktppC~~~ii~~g   96 (364)
                            +-||      +.|-+.|.+.+
T Consensus       103 ~~~~~~~sPC------G~CRQ~L~Ef~  123 (158)
T 3oj6_A          103 NEGRGILSPC------GRCRQVLADLH  123 (158)
T ss_dssp             TTTTEEECCC------HHHHHHHHHHS
T ss_pred             CCCCCCCCCC------HHHHHHHHHHC
T ss_conf             7998213886------88999999968


No 55 
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=94.98  E-value=0.15  Score=29.23  Aligned_cols=80  Identities=29%  Similarity=0.338  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC------CCCCHHHHHHHHHH---CCHHCCCEEEEECCC
Q ss_conf             9999999999870882188896479998-6998999984388------76984899999973---001069889990573
Q gi|254780348|r    9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY------GGCPHAEVQALEEA---GEEARGATAYVTLEP   78 (364)
Q Consensus         9 ~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~------~G~~HAE~~al~~~---~~~~~~atlyvtLEP   78 (364)
                      ..+...+.+|......-.-|=.|||++. ++|+|. .|....      .-+-|||..|+.+|   |++. -.++.|+.-|
T Consensus        51 ~l~~~llp~A~~~A~aPyS~F~VGAa~~~~sG~iy-~G~NvE~~nas~~~ticAEq~Ai~~A~~~Ge~~-i~~i~v~~sP  128 (294)
T 1ctt_A           51 ALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEKA-LAAITVNYTP  128 (294)
T ss_dssp             HHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCCC-EEEEEESSCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCC
T ss_conf             99998899999625198789937899994899899-976034578888875458999999998748973-6999997898


Q ss_pred             CCCCCCCCHHHHHHHHCC
Q ss_conf             211575210555653013
Q gi|254780348|r   79 CSHYGRSPPCAQFIIECG   96 (364)
Q Consensus        79 C~h~GktppC~~~ii~~g   96 (364)
                      |-|      |-+.|.+..
T Consensus       129 CG~------CRQ~l~E~~  140 (294)
T 1ctt_A          129 CGH------CRQFMNELN  140 (294)
T ss_dssp             CHH------HHHHHTTBT
T ss_pred             CHH------HHHHHHHHC
T ss_conf             388------899998614


No 56 
>3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, zinc, alternative splicing, cytoplasm; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=94.24  E-value=0.099  Score=30.52  Aligned_cols=94  Identities=21%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHCCH---H-C--CCEEEEECCCCCCCCCCCHHHHHHHHC-----CCCEEEEECC--CCCCCCCCCCCCC
Q ss_conf             984899999973001---0-6--988999057321157521055565301-----3432466301--0121101243311
Q gi|254780348|r   52 CPHAEVQALEEAGEE---A-R--GATAYVTLEPCSHYGRSPPCAQFIIEC-----GIRRVVVCVD--DPDVRVSGRGLQW  118 (364)
Q Consensus        52 ~~HAE~~al~~~~~~---~-~--~atlyvtLEPC~h~GktppC~~~ii~~-----gIk~Vvi~~~--DPnp~v~gkGi~~  118 (364)
                      +-|||+.-|......   + .  .-|.|+|=-||.      .|++.|.+.     .++-.++++.  +..|+ .-.|...
T Consensus        78 ~~HAE~~Fl~~i~~~~ld~~~~Y~VTwy~SwSPC~------~CA~~va~FL~~~~~v~L~If~sRLY~~~~~-~q~gLr~  150 (207)
T 3ir2_A           78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCF------SCAQEMAKFISKNKHVSLCIKTARIYDDQGR-AQEGLRT  150 (207)
T ss_dssp             CCCHHHHHHHHGGGGCCCTTSCEEEEEEEEECCCH------HHHHHHHHHHHHCTTEEEEEEEEECCCCSSS-HHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHH------HHHHHHHHHHHHCCCEEEEEEHHHHCCCCHH-HHHHHHH
T ss_conf             73489999998756167945437898877369739------9999999999768991798777652534607-8999999


Q ss_pred             CCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             001898896222101232001222201134222011
Q gi|254780348|r  119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL  154 (364)
Q Consensus       119 L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~l  154 (364)
                      |.++|+.|..+--+|...-=+-|..  ..++||.-.
T Consensus       151 L~~aG~~v~iM~~~eF~~CW~nFV~--~~~~~F~PW  184 (207)
T 3ir2_A          151 LAEAGAKISIMTYSEFKHCWDTFVD--HQGAPFQPW  184 (207)
T ss_dssp             HHHTTCEEEECCHHHHHHHHHHHBC--CTTCCCCCC
T ss_pred             HHHCCCCEEEECHHHHHHHHHHHHH--CCCCCCCCH
T ss_conf             9987997896181888999999870--899988876


No 57 
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans}
Probab=79.59  E-value=1.1  Score=23.56  Aligned_cols=175  Identities=13%  Similarity=0.140  Sum_probs=78.3

Q ss_pred             CCCEEEEECCCCCCCCCCC---CCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf             3432466301012110124---3311001898896222101232001222201134222011010278772021136532
Q gi|254780348|r   96 GIRRVVVCVDDPDVRVSGR---GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV  172 (364)
Q Consensus        96 gIk~Vvi~~~DPnp~v~gk---Gi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~  172 (364)
                      .=|||++|..----. ..+   =++.|+++|.+|..++.+.+..+...|....    .|.     .    .+..-.+...
T Consensus         6 ~gK~I~lgITGs~a~-~~~~l~li~~L~~~g~~V~vI~S~~A~~~vt~~~~~~----~~~-----~----~~~~lt~~~v   71 (201)
T 3lqk_A            6 AGKHVGFGLTGSHCT-YHEVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESS----EWI-----N----KIKQITEEPI   71 (201)
T ss_dssp             TTCEEEEECCSCGGG-GGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCTTCSC----HHH-----H----HHHHHCCSCC
T ss_pred             CCCEEEEEECCHHHH-HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH----HHH-----H----HHHHHHCCCC
T ss_conf             899899997585999-9999999999998899699997742886633400178----888-----8----9999969996


Q ss_pred             CCCCHHHHHHHH-HHHHCCCCEEEE---HHHH------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH-HHCCCCC
Q ss_conf             222101356667-642014403663---1220------1345423544344443442157644668998022-1003444
Q gi|254780348|r  173 PITGFISKNQVH-LLRAQSDAILVG---IGTV------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTAL  241 (364)
Q Consensus       173 wIT~~~sr~~vh-~lRa~~DaIlvG---~~Tv------~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~-~l~~~~~  241 (364)
                      | +....  --| .++..+|+++|=   +||+      +.||+-..+=..-+....|+.++...+-..-.+. ++.+-..
T Consensus        72 ~-~~~~~--~~~i~~~~~aD~mvIaPaSanTlAKiA~GiaDnLlt~aa~~~Lk~~~plviapamn~~m~~~~~Ni~~L~~  148 (201)
T 3lqk_A           72 V-DSMVK--AEPFGPKTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMA  148 (201)
T ss_dssp             B-CSHHH--HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHT
T ss_pred             C-CCCCC--CHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             5-77652--01432210238999910888799999754459899999999986599889997888678877999999996


Q ss_pred             CCEEEEEC-CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC
Q ss_conf             67079854-65542101100223222223332227889999860799699981
Q gi|254780348|r  242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE  293 (364)
Q Consensus       242 ~~~~ii~~-~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVE  293 (364)
                      ...+++.- ...++.      .+.-..+..-..=+..+.+.|..+.++.+|+|
T Consensus       149 ~~~~~~~P~~~~~~~------~~~~s~~a~~~~i~~~i~~aL~~~~iqp~~~~  195 (201)
T 3lqk_A          149 TKNIYFIPFGQDNPQ------VKPNSLVARMEALPETIEAALRGQQYQPVLIE  195 (201)
T ss_dssp             STTEEECCEEESCTT------TCTTCEEECGGGHHHHHHHHHTTCCCSCCBCC
T ss_pred             CCCEEEECCCCCCCC------CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             899999328987402------37775425287789999999708775669998


No 58 
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=72.57  E-value=1.6  Score=22.45  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHCCHHCCCEEEEE--------CCCCCCC--CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             6984899999973001069889990--------5732115--75210555653013432466301012110124331100
Q gi|254780348|r   51 GCPHAEVQALEEAGEEARGATAYVT--------LEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS  120 (364)
Q Consensus        51 G~~HAE~~al~~~~~~~~~atlyvt--------LEPC~h~--GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~  120 (364)
                      |+.||=..+|.+.+.   -..+||.        +..|...  -....-.+.+.+.+|.=||+|..+|  +++| =.+.|+
T Consensus        31 gREhAi~~~l~~s~~---~~~v~~~pgN~g~~~~~~~~~i~~~d~~~l~~~~~~~~iDlvvvGpE~p--L~~G-i~D~l~  104 (442)
T 3lp8_A           31 GREHSMLHHIRKSTL---LNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEKIELVVIGPETP--LMNG-LSDALT  104 (442)
T ss_dssp             HHHHHHHHHHTTCTT---EEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTTCCEEEECSHHH--HHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHCCC---CCEEEEECCCHHHHHCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHHHH
T ss_conf             899999999975989---8989997996788741821662778999999999982999999898389--8878-899997


Q ss_pred             CCCCEEEECCCCH-----HHHHHHHHHHHCCCCCCHHHHHHCCCHH
Q ss_conf             1898896222101-----2320012222011342220110102787
Q gi|254780348|r  121 QKGIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQD  161 (364)
Q Consensus       121 ~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP~V~lK~A~SlD  161 (364)
                      ++||.|-|.-.+.     .+.+-+.|+.  +.+-|--..+.+.+.+
T Consensus       105 ~~gi~vfGps~~~A~lE~sK~f~k~~m~--~~~IPta~~~~~~~~~  148 (442)
T 3lp8_A          105 EEGILVFGPSKAAARLESSKGFTKELCM--RYGIPTAKYGYFVDTN  148 (442)
T ss_dssp             HTTCEEESCCHHHHHHHHCHHHHHHHHH--HHTCCBCCEEEESSHH
T ss_pred             HCCCCEEECCHHHHHHHHCHHHHHHHHH--HHCCCCCCHHHCCCHH
T ss_conf             4899478647889887536899999999--8688875100138899


No 59 
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=72.23  E-value=2  Score=21.65  Aligned_cols=172  Identities=12%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             CCEEEEECCCCCCCCCCCC----CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf             4324663010121101243----311001898896222101232001222201134222011010278772021136532
Q gi|254780348|r   97 IRRVVVCVDDPDVRVSGRG----LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV  172 (364)
Q Consensus        97 Ik~Vvi~~~DPnp~v~gkG----i~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~  172 (364)
                      =|||++|..--  ..+=++    ++.|++.|.+|..++.+.+..+...|........             .+....+...
T Consensus         5 gKrI~lgiTGs--~aa~~~~~~li~~L~~~g~~V~vv~S~~A~~~it~~~~~~~~~~-------------~~~~l~~~~~   69 (207)
T 3mcu_A            5 GKRIGFGFTGS--HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGAEWIK-------------KIEEITGFKA   69 (207)
T ss_dssp             TCEEEEEECSC--GGGGTTSHHHHHHHHHTTCEEEEEECC------------CHHHH-------------HHHHHSSSCC
T ss_pred             CCEEEEEECCH--HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHH-------------HHHHHCCCCC
T ss_conf             99999997484--99999999999999988996999986569978538777665333-------------6767419843


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEE---EHHHH------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH-HCCCCCC
Q ss_conf             22210135666764201440366---31220------13454235443444434421576446689980221-0034446
Q gi|254780348|r  173 PITGFISKNQVHLLRAQSDAILV---GIGTV------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-IIKTALL  242 (364)
Q Consensus       173 wIT~~~sr~~vh~lRa~~DaIlv---G~~Tv------~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~-l~~~~~~  242 (364)
                      | ++... ..--.+..++|+++|   .+||+      +.||+-+.+=..-.....|+.++..-+-..-.+.. +-+-...
T Consensus        70 ~-~~~~~-~~~~~~s~~aD~mvIaPaTaNTlAKiA~GiaDnlvt~~a~~~L~~~~pvviaPamn~~m~~n~~n~~~l~~l  147 (207)
T 3mcu_A           70 I-NSIVG-AEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLNGVNLMRLMAT  147 (207)
T ss_dssp             B-CSHHH-HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHHB
T ss_pred             C-CCCCC-CCHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHHHHHC
T ss_conf             4-68654-422121211189998347677999998244698888999999857996899969887787499999999982


Q ss_pred             CEEE-EECCCCCCCHHHHCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCEEEEC
Q ss_conf             7079-8546554210110022322222333222--7889999860799699981
Q gi|254780348|r  243 APVI-IVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVE  293 (364)
Q Consensus       243 ~~~i-i~~~~~~~~~~~~~~~~~v~vi~~~~~d--l~~iL~~L~~~gi~~iLVE  293 (364)
                      +.+. +.........    +..  .+  ....|  ...+++.|..++++-+|+|
T Consensus       148 ~~~~~vp~~p~~~~~----kp~--s~--~~~~~~i~~~v~~aL~~~~~qp~l~~  193 (207)
T 3mcu_A          148 KNIYFVPFGQDAPEK----KPN--SM--VARMELLEDTVLEALQGKQLQPVVVE  193 (207)
T ss_dssp             TTEEECCEEESCTTT----STT--CE--EECGGGHHHHHHHHHTTCCCSCCBCC
T ss_pred             CCCEEEECCCCCCCC----CCC--CC--CCCHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             898799889973012----877--56--55276699999999708674669999


No 60 
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=70.99  E-value=5.2  Score=18.94  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCC
Q ss_conf             99999999999987088218889647999869989999843887698489999997300106988999057321157521
Q gi|254780348|r    7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP   86 (364)
Q Consensus         7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~Gktp   86 (364)
                      .+..|+.|+.+=..+        ..-||+. +|+.|-+ ++++.=.|==   .|.+..+.++|+.+.-..     .||. 
T Consensus        14 ~~~lm~~a~~LL~e~--------~~S~vv~-~g~~i~t-s~~rGvkpL~---~Ll~~~~~L~ga~iADKV-----VGKa-   74 (151)
T 1vk9_A           14 EKNLLRSALKIFEKK--------DLSLLAY-SGRSIFE-SKDSGLKPVV---ELFKRFDNLEGSLVIDKM-----VGKA-   74 (151)
T ss_dssp             CHHHHHHHHHHHHHT--------TCSEEEE-SSSEEEE-ECCSTTHHHH---HHHHHCSCCTTCEEEEEE-----ECHH-
T ss_pred             HHHHHHHHHHHHHHC--------CEEEEEE-CCCEEEE-ECCCCHHHHH---HHHHCCHHHCCCEEEHHH-----HHHH-
T ss_conf             899999999999718--------8379996-5999986-3686827999---998271754688730247-----6399-


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             05556530134324663010121101243311001898896
Q gi|254780348|r   87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD  127 (364)
Q Consensus        87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~  127 (364)
                       -+-+++..||+.|+-..      ++-.+.+.|+++||+|+
T Consensus        75 -AA~L~vlggv~eVyA~V------ISe~Al~lL~~~gI~vs  108 (151)
T 1vk9_A           75 -AASFLLKMKPDHIHAKV------ISKPALKLMNEYGQSFS  108 (151)
T ss_dssp             -HHHHHHHHCCSEEEEEE------EEHHHHHHHHHTTCCEE
T ss_pred             -HHHHHHHCCEEEEEHHH------HCHHHHHHHHHCCCEEE
T ss_conf             -99999957971775335------16899999998596677


No 61 
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=70.00  E-value=3.5  Score=20.05  Aligned_cols=28  Identities=25%  Similarity=0.216  Sum_probs=13.6

Q ss_pred             HHHCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             5301343246630101211012433110
Q gi|254780348|r   92 IIECGIRRVVVCVDDPDVRVSGRGLQWL  119 (364)
Q Consensus        92 ii~~gIk~Vvi~~~DPnp~v~gkGi~~L  119 (364)
                      ..+.|+.-||+|+.++|-.+.-.-.+.|
T Consensus        82 ~k~~G~dGvVfG~L~~dg~iD~~~~~~L  109 (256)
T 1twd_A           82 VRELGFPGLVTGVLDVDGNVDMPRMEKI  109 (256)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHH
T ss_pred             HHHCCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf             9985999678866889998499999999


No 62 
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=67.86  E-value=5.2  Score=18.89  Aligned_cols=50  Identities=16%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             ECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC---CCCCCCCCCCCCCCCCCEEE
Q ss_conf             057321157521055565301343246630101---21101243311001898896
Q gi|254780348|r   75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP---DVRVSGRGLQWLSQKGIIVD  127 (364)
Q Consensus        75 tLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DP---np~v~gkGi~~L~~~GI~V~  127 (364)
                      ..++-.|+|...|  +.+.+.|++-|++|+.+-   ...+. .=++..+++|+++-
T Consensus        66 ~~~~Ga~TG~is~--~~l~~~g~~~viigHsErR~~~~e~~-~~v~~a~~~gl~~I  118 (226)
T 1w0m_A           66 VEAGGAHTAHVSL--ENIKEAGGSGVILNHSEAPLKLNDLA-RLVAKAKSLGLDVV  118 (226)
T ss_dssp             BSSCSSCTTCCBH--HHHHHHTCCEEEECCTTSCCBHHHHH-HHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCHHHH--HHHHHCCCCEEEECCHHHHHHHCHHH-HHHHHHHHCCCEEE
T ss_conf             8789887066569--99987599799974368776510068-99999998899899


No 63 
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=62.02  E-value=7.7  Score=17.78  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf             99999999870882188896479998699899998438876984899999973001069889990573211575210555
Q gi|254780348|r   11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ   90 (364)
Q Consensus        11 m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~   90 (364)
                      +..|+++.+.     .+.|  .|||+|.+.--|.+...-  ..-|-..|+.--...+.|..+=++ .||     +..+++
T Consensus       216 adaA~~lv~e-----f~~p--a~aIiKH~NPCGvA~~~~--~~~Ay~~A~~~Dp~SAFGGIVA~N-~~v-----d~~~A~  280 (464)
T 1zcz_A          216 AENAWFMAKN-----LPRM--GAVVVKHQSPCGAAIGED--KVEIVKKAIEADDESSFGGILAVN-FEM-----DEEVAK  280 (464)
T ss_dssp             HHHHHHHHHT-----CSSS--EEEEEETTEEEEEEECSC--HHHHHHHHHHHTTTTTTTEEEEES-SCB-----CHHHHH
T ss_pred             HHHHHHHHHC-----CCCC--CEEEECCCCCCCCCCCCC--CCHHHHHHHHCCCCCCCCEEEEEC-CCH-----HHHHHH
T ss_conf             8999864331-----3677--248862577654532344--016784050069955446089977-712-----689999


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             653013432466301012110124331100189889
Q gi|254780348|r   91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV  126 (364)
Q Consensus        91 ~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V  126 (364)
                      +| +. .-+|||+-     ...-..+++|++..+.+
T Consensus       281 ~I-~~-F~EvIIAP-----~f~~eALeiL~kKk~~~  309 (464)
T 1zcz_A          281 SL-KK-YLEVIVAP-----SFTQEAIEVLSKKKVRL  309 (464)
T ss_dssp             HC-CS-CEEEEECS-----CBCHHHHHHHTTSSCEE
T ss_pred             HH-HH-CEEEEECC-----CCCHHHHHHHHHCCCHH
T ss_conf             97-64-34999828-----98989999986017201


No 64 
>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens}
Probab=61.55  E-value=3.2  Score=20.30  Aligned_cols=79  Identities=28%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEE--------ECCCCCCCCCCCHH----HHHHHHCCCCEEEEECCCCC
Q ss_conf             9999843887698489999997300106988999--------05732115752105----55653013432466301012
Q gi|254780348|r   41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV--------TLEPCSHYGRSPPC----AQFIIECGIRRVVVCVDDPD  108 (364)
Q Consensus        41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyv--------tLEPC~h~GktppC----~~~ii~~gIk~Vvi~~~DPn  108 (364)
                      |||-|     |+.||=..+|.+.+.   -..+||        +++-|.-..-.+..    .+.+.+.+|.-||+|-.+| 
T Consensus        29 viGsG-----gREhAia~~l~~s~~---~~~v~~~pgN~g~~~~~~~~~~~i~~~d~~~i~~~~~~~~iDlvivGpE~p-   99 (452)
T 2qk4_A           29 IIGSG-----GREHTLAWKLAQSHH---VKQVLVAPGNAGTACSEKISNTAISISDHTALAQFCKEKKIEFVVVGPEAP-   99 (452)
T ss_dssp             EEECS-----HHHHHHHHHHTTCTT---EEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHHHHHHHTCCEEEECSSHH-
T ss_pred             EECCC-----HHHHHHHHHHHHCCC---CCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHH-
T ss_conf             99978-----899999999985989---888999789879850043123465867999999999985999999897389-


Q ss_pred             CCCCCCCCCCCCCCCCEEEECC
Q ss_conf             1101243311001898896222
Q gi|254780348|r  109 VRVSGRGLQWLSQKGIIVDRMM  130 (364)
Q Consensus       109 p~v~gkGi~~L~~~GI~V~~~~  130 (364)
                       ++.| =.+.|+++||.|-|--
T Consensus       100 -L~~G-l~D~l~~~gi~vfGps  119 (452)
T 2qk4_A          100 -LAAG-IVGNLRSAGVQCFGPT  119 (452)
T ss_dssp             -HHTT-HHHHHHHTTCCEESCC
T ss_pred             -HHHH-HHHHHHHCCCCEECCH
T ss_conf             -8988-9999986799443550


No 65 
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=58.28  E-value=3.6  Score=19.99  Aligned_cols=31  Identities=29%  Similarity=0.551  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHCCCCEEEEHHHHCCCCCC
Q ss_conf             1013566676420144036631220134542
Q gi|254780348|r  176 GFISKNQVHLLRAQSDAILVGIGTVLADDPE  206 (364)
Q Consensus       176 ~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~  206 (364)
                      |-.+..++..+|+-+||+|||..=+..+||.
T Consensus       210 GI~s~~d~~~l~~G~davLIGesLm~~~dp~  240 (251)
T 1i4n_A          210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPR  240 (251)
T ss_dssp             CCCCGGGHHHHTTTCSEEEECHHHHHCSSHH
T ss_pred             CCCCHHHHHHHHHCCCEEEECHHHHCCCCHH
T ss_conf             9999999999982899999886875799999


No 66 
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=57.79  E-value=8.4  Score=17.52  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=12.2

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             732115752105556530134324663010
Q gi|254780348|r   77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDD  106 (364)
Q Consensus        77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~D  106 (364)
                      ++-+++|...  .+.+.+.|++.|++|+.+
T Consensus        71 ~~Ga~TGeis--~~~l~~~G~~~vliGHSE   98 (225)
T 1hg3_A           71 KPGSHTGHVL--PEAVKEAGAVGTLLNHSE   98 (225)
T ss_dssp             CSBSCTTCCC--HHHHHHTTCCEEEESCGG
T ss_pred             CCCCCCCHHH--HHHHHHCCCCEEEECCCC
T ss_conf             7886036422--899975598889964743


No 67 
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=55.23  E-value=6.1  Score=18.45  Aligned_cols=106  Identities=15%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             CCCHHHHHHHHHHCCHHCCCEEEE--------ECCCCCCCCCC--CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             698489999997300106988999--------05732115752--10555653013432466301012110124331100
Q gi|254780348|r   51 GCPHAEVQALEEAGEEARGATAYV--------TLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS  120 (364)
Q Consensus        51 G~~HAE~~al~~~~~~~~~atlyv--------tLEPC~h~Gkt--ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~  120 (364)
                      |+.||=..+|.+.+..   ..+||        .+..|....-+  ..=.+...+.+|.-||+|..+|  +++| =.+.|+
T Consensus        31 grEhAia~~l~~s~~~---~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~~~~~~iD~vvvGpE~p--L~~g-l~D~l~  104 (451)
T 2yrx_A           31 GREHAIAWKAAQSPLV---GKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIVGPEAP--LASG-IVDRFM  104 (451)
T ss_dssp             HHHHHHHHHHHTCTTE---EEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEECSHHH--HHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHCCCC---CEEEEECCCHHHHHHCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHH--HHHH-HHHHHH
T ss_conf             8999999999749898---989997898799851704624868999999999983999999897578--8889-999995


Q ss_pred             CCCCEEEECCCCHHH-HHHHHHHH--HCCCCCCHHHHHHCCCHHH
Q ss_conf             189889622210123-20012222--0113422201101027877
Q gi|254780348|r  121 QKGIIVDRMMESEGK-IFLHAYLT--RQVEKRSHITLKIAVSQDN  162 (364)
Q Consensus       121 ~~GI~V~~~~~~~~~-~ln~~f~~--~~~~~rP~V~lK~A~SlDG  162 (364)
                      ++||.|-|--.+.++ +-.+.|..  ..+.+-|-...+.+.|.+-
T Consensus       105 ~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~~~~~~~~~e  149 (451)
T 2yrx_A          105 AEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEE  149 (451)
T ss_dssp             HTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH
T ss_pred             HCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECHHH
T ss_conf             069940077899999875779899999972979878389978999


No 68 
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Probab=50.83  E-value=7.4  Score=17.90  Aligned_cols=52  Identities=19%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHH-HCC---HHCCCEEEEE-CCCCCCCC
Q ss_conf             18889647999869989999843887698489999997-300---1069889990-57321157
Q gi|254780348|r   25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE---EARGATAYVT-LEPCSHYG   83 (364)
Q Consensus        25 t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~-~~~---~~~~atlyvt-LEPC~h~G   83 (364)
                      +.+.|.+++|+++||+|+..|       +.+|+.++.. +|.   +++|.++.== -.+-+|+.
T Consensus        49 ~~~~~~~~av~I~~g~I~~vG-------~~~~~~~~~~~~gaeVIDa~G~~V~PGfID~H~H~~  105 (534)
T 3icj_A           49 FSPVKKVSGLVISNERVLYAG-------DSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLD  105 (534)
T ss_dssp             ETTEEEESEEEEETTEEEEEE-------CHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHH
T ss_pred             CCCCCEEEEEEEECCEEEEEC-------CCHHHHHHCCCCCCEEEECCCCEEECCCEEHHHCHH
T ss_conf             999866708999999999988-------808989746899998998999999226350513934


No 69 
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=50.29  E-value=7  Score=18.06  Aligned_cols=107  Identities=17%  Similarity=0.237  Sum_probs=60.3

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC----CCC--------CCCHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9999843887698489999997300106988999057321----157--------5210555653013432466301012
Q gi|254780348|r   41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS----HYG--------RSPPCAQFIIECGIRRVVVCVDDPD  108 (364)
Q Consensus        41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~----h~G--------ktppC~~~ii~~gIk~Vvi~~~DPn  108 (364)
                      |||-|     |+.||=..||.+.+   ....+||.  |.+    +..        ...--.+.+.+.+|.-|++|..+| 
T Consensus         5 iiG~G-----grEha~~~~l~~~~---~~~~~~~~--~~N~g~~~~~~~~~~~~~d~~~i~~~~~~~~id~vi~g~e~~-   73 (424)
T 2yw2_A            5 VVGNG-----GREHAIAWKVAQSP---LVKELYVA--KGNAGIWEIAKRVDISPTDVEKLAEFAKNEGVDFTIVGPEAP-   73 (424)
T ss_dssp             EEESS-----HHHHHHHHHHTTCT---TCSEEEEE--ECCTTGGGTSEEECSCTTCHHHHHHHHHHHTCSEEEECSHHH-
T ss_pred             EECCC-----HHHHHHHHHHHHCC---CCCEEEEE--CCCHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEECCCHH-
T ss_conf             98958-----99999999998589---98889998--898889854300862889999999999996999999898478-


Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCC-----HHHHHHHHHHHHCCCCCCHHHHHHCCCHHH
Q ss_conf             110124331100189889622210-----123200122220113422201101027877
Q gi|254780348|r  109 VRVSGRGLQWLSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQDN  162 (364)
Q Consensus       109 p~v~gkGi~~L~~~GI~V~~~~~~-----~~~~ln~~f~~~~~~~rP~V~lK~A~SlDG  162 (364)
                       .++| =.+.|+++||.|-|.-.+     ..+.+.+.|+.  +.+-|-...+.+.|.|-
T Consensus        74 -l~~~-~a~~l~~~gi~~~gp~~~~~~~~~~K~~~k~~~~--~~gipt~~~~~~~~~~e  128 (424)
T 2yw2_A           74 -LVEG-IVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMK--KYGIPTARYEVFTDFEK  128 (424)
T ss_dssp             -HHTT-HHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHH--HTTCCBCCEEEESCHHH
T ss_pred             -HHHH-HHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHH--HCCCCCCCCCCCCCHHH
T ss_conf             -8888-9999986798313848999999868899999999--84989634445561999


No 70 
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=50.23  E-value=5.4  Score=18.79  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf             2101356667642014403663122013
Q gi|254780348|r  175 TGFISKNQVHLLRAQSDAILVGIGTVLA  202 (364)
Q Consensus       175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~  202 (364)
                      +++.+....+.+|.+++-+++|++||+.
T Consensus        60 ~tp~a~e~i~~l~~~~p~~~iGaGTV~~   87 (225)
T 1mxs_A           60 RSQHGLKAIQVLREQRPELCVGAGTVLD   87 (225)
T ss_dssp             SSTHHHHHHHHHHHHCTTSEEEEECCCS
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             9940999999999749970786530367


No 71 
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, RNA-binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix K1} SCOP: c.51.1.2
Probab=48.14  E-value=13  Score=16.30  Aligned_cols=19  Identities=21%  Similarity=0.391  Sum_probs=8.0

Q ss_pred             CHHHHHHHHHHCCCCEEEE
Q ss_conf             2788999986079969998
Q gi|254780348|r  274 DLKKLLTILVGRGVTSLLV  292 (364)
Q Consensus       274 dl~~iL~~L~~~gi~~iLV  292 (364)
                      .++++++...++|+++|+|
T Consensus        71 ~lkei~~~A~~~g~T~liI   89 (217)
T 2cxh_A           71 SMEELAREAIIRGADRIVV   89 (217)
T ss_dssp             CHHHHHHHHHHTTEEEEEE
T ss_pred             CHHHHHHHHHHCCCCEEEE
T ss_conf             2999999998779988999


No 72 
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=48.06  E-value=5.9  Score=18.54  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHCCHHCCCEEEEE-------CC-CCCCCCCCC----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             6984899999973001069889990-------57-321157521----05556530134324663010121101243311
Q gi|254780348|r   51 GCPHAEVQALEEAGEEARGATAYVT-------LE-PCSHYGRSP----PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW  118 (364)
Q Consensus        51 G~~HAE~~al~~~~~~~~~atlyvt-------LE-PC~h~Gktp----pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~  118 (364)
                      |+.||=+.+|.+.   .+..++||.       ++ -|.+.--.+    .=.+...+.+|.=||||-.+|  +++| =.+.
T Consensus        13 gREhAia~~l~~s---~~~~~v~~~pgN~g~~~~~~~~~~~~~~~d~~~i~~~~~~~~idlvivgpe~p--L~~G-l~D~   86 (431)
T 3mjf_A           13 GREHALGWKAAQS---PLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAP--LVIG-VVDA   86 (431)
T ss_dssp             HHHHHHHHHHTTC---TTEEEEEEEECCHHHHHCTTCEECCCCTTCHHHHHHHHHHTTEEEEEECSHHH--HHTT-HHHH
T ss_pred             HHHHHHHHHHHHC---CCCCEEEEECCCHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHH
T ss_conf             9999999999759---89897999689726653066545246866999999999982999899897489--8877-9999


Q ss_pred             CCCCCCEEEECCCC-----HHHHHHHHHHHHCCCCCCHHHHHHCCCHH
Q ss_conf             00189889622210-----12320012222011342220110102787
Q gi|254780348|r  119 LSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQD  161 (364)
Q Consensus       119 L~~~GI~V~~~~~~-----~~~~ln~~f~~~~~~~rP~V~lK~A~SlD  161 (364)
                      |+++||.|-|--.+     ..+.+-+.|+  .+++-|-...+...+.+
T Consensus        87 l~~~gi~vfGP~~~aA~lE~sK~fak~~m--~~~~IPta~~~~~~~~~  132 (431)
T 3mjf_A           87 FRAAGLAIFGPTQAAAQLEGSKAFTKDFL--ARHNIPSAEYQNFTDVE  132 (431)
T ss_dssp             HHHTTCCEESCCHHHHHHHHCHHHHHHHH--HHTTCSBCCEEEESCHH
T ss_pred             HHHCCCCEECCCHHHHHHHHHHHHHHHHH--HHCCCCCCCEEEECCHH
T ss_conf             97479933387788878776199999998--75265887469958999


No 73 
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=47.46  E-value=9.6  Score=17.13  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=12.7

Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             55653013432466301012110124331100189889
Q gi|254780348|r   89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV  126 (364)
Q Consensus        89 ~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V  126 (364)
                      ++.+...|+.-|+++...|+      ..+.|+++||+|
T Consensus        56 ~~~l~~~gv~~vi~~~iG~~------a~~~l~~~GI~v   87 (121)
T 2yx6_A           56 PNFIKDHGAKIVLTYGIGRR------AIEYFNSLGISV   87 (121)
T ss_dssp             HHHHHHTTCCEEECSBCCHH------HHHHHHHTTCEE
T ss_pred             HHHHHHCCCCEEEECCCCHH------HHHHHHHCCCEE
T ss_conf             89998769989998867988------999999879999


No 74 
>1o13_A Probable NIFB protein; structural genomics, TM1816, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=46.36  E-value=10  Score=17.00  Aligned_cols=11  Identities=9%  Similarity=0.003  Sum_probs=3.5

Q ss_pred             HHHHHHHHHCC
Q ss_conf             89999999788
Q gi|254780348|r  296 AAVAHSFINSR  306 (364)
Q Consensus       296 ~~l~~sfl~~~  306 (364)
                      +.....|.+.|
T Consensus        87 ~~a~~~L~~~G   97 (136)
T 1o13_A           87 RRAIAAFEAMG   97 (136)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHCC
T ss_conf             88999999879


No 75 
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P*
Probab=46.26  E-value=5.2  Score=18.93  Aligned_cols=92  Identities=18%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             CCCCCCEE--EECCCCHHHH-HHHHHHHHCCCCCCHHHHHHCCCHHHHCCCC-CCCCCCC--CCHHHHHHHHHHHHCCCC
Q ss_conf             00189889--6222101232-0012222011342220110102787720211-3653222--210135666764201440
Q gi|254780348|r  119 LSQKGIIV--DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPI--TGFISKNQVHLLRAQSDA  192 (364)
Q Consensus       119 L~~~GI~V--~~~~~~~~~~-ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~-~g~s~wI--T~~~sr~~vh~lRa~~Da  192 (364)
                      -++-|.++  +.--++|... +..+--.---++|..-|+.+-...--+++.. ..+..+|  ||-.++.++..+++..||
T Consensus       153 a~~lgl~~LvEvh~~~el~~a~~~~a~iiGINnRdL~t~~~d~~~~~~l~~~ip~~~~~vseSGI~~~~d~~~~~~g~~~  232 (452)
T 1pii_A          153 AHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANG  232 (452)
T ss_dssp             HHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTTCSE
T ss_pred             HHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCEECHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCE
T ss_conf             99848865999789999999982899989997988631508779999986107878679984799999999999817999


Q ss_pred             EEEEHHHHCCCCCCCCCC
Q ss_conf             366312201345423544
Q gi|254780348|r  193 ILVGIGTVLADDPELTCR  210 (364)
Q Consensus       193 IlvG~~Tv~~DnP~Lt~R  210 (364)
                      +|||..=+..+||...+|
T Consensus       233 ~LiG~~lm~~~~~~~~~~  250 (452)
T 1pii_A          233 FLIGSALMAHDDLHAAVR  250 (452)
T ss_dssp             EEECHHHHTCSCHHHHHH
T ss_pred             EEECHHHCCCCCHHHHHH
T ss_conf             998956438999999999


No 76 
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8}
Probab=44.93  E-value=6.7  Score=18.16  Aligned_cols=108  Identities=18%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEE--------CCCCCC-CCCCCHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf             99998438876984899999973001069889990--------573211-575210555653013432466301012110
Q gi|254780348|r   41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT--------LEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRV  111 (364)
Q Consensus        41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvt--------LEPC~h-~GktppC~~~ii~~gIk~Vvi~~~DPnp~v  111 (364)
                      |||-|     |+.||=..+|.+.+.   -.++||.        +-.|.- ........+...+.+|.-||+|..+|  ++
T Consensus         5 viGsG-----grEhAia~~l~~~~~---~~~v~~~pgN~g~~~~~~~~~~~~d~~~i~~~~~~~~idlvivGpE~p--L~   74 (417)
T 2ip4_A            5 VVGSG-----GREHALLWKAAQSPR---VKRLYAAPGNAGMEALAELVPWNGDVEALADWALAEGIDLTLVGPEAP--LV   74 (417)
T ss_dssp             EEESS-----HHHHHHHHHHHTCSS---CCEEEEEECCTTGGGTSEECCCCSCHHHHHHHHHHHTCCEEEECSSHH--HH
T ss_pred             EECCC-----HHHHHHHHHHHHCCC---CCEEEEECCCHHHHHHCEEECCCCCHHHHHHHHHHHCCCEEEECCCHH--HH
T ss_conf             98978-----999999999972999---898999689767775174215668999999999985999999897478--88


Q ss_pred             CCCCCCCCCCCCCEEEECCCCH-----HHHHHHHHHHHCCCCCCHHHHHHCCCHH
Q ss_conf             1243311001898896222101-----2320012222011342220110102787
Q gi|254780348|r  112 SGRGLQWLSQKGIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQD  161 (364)
Q Consensus       112 ~gkGi~~L~~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP~V~lK~A~SlD  161 (364)
                      .| =.+.|+++||.|-|--.+.     .+.+.+.|+.  +.+-|--..+.+.|.+
T Consensus        75 ~g-l~d~l~~~gi~v~Gp~~~~a~le~sK~~~k~~m~--~~gIpt~~~~~~~~~~  126 (417)
T 2ip4_A           75 EG-IADAFQARGLLLFGPTQKAAMIEGSKAFAKGLME--RYGIPTARYRVFREPL  126 (417)
T ss_dssp             TT-HHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHH--HTCCCBCCEEEESSHH
T ss_pred             HH-HHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHH--HHCCCCCCCEEEECHH
T ss_conf             78-8999985799765870778887767899999999--8198988854993589


No 77 
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=44.28  E-value=8  Score=17.65  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             2278899998607996999812------3899999997889889999960
Q gi|254780348|r  273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS  316 (364)
Q Consensus       273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia  316 (364)
                      ..+-..-+.|.++|..+|.+=+      |+  +...|.+.-+|+++.+=+
T Consensus       231 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~--A~~~l~~s~i~~iv~TnT  278 (317)
T 1dku_A          231 GTITLAANALVENGAKEVYACCTHPVLSGP--AVERINNSTIKELVVTNS  278 (317)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECSEECCCTT--HHHHHHTSSEEEEEEETT
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEECCCCCCH--HHHHHHCCCCCEEEECCC
T ss_conf             019999999997699778999653434837--999986079988998589


No 78 
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica}
Probab=43.96  E-value=7.8  Score=17.73  Aligned_cols=122  Identities=15%  Similarity=0.138  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCC-------EEEE
Q ss_conf             210135666764201440366312201345423544344443442157644668998022100344467-------0798
Q gi|254780348|r  175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-------PVII  247 (364)
Q Consensus       175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~-------~~ii  247 (364)
                      +++.+......+|.++.-+++|++||+.-+-   ++.   ....=..+++++..+-.    +++.....       ..++
T Consensus        47 ~~~~a~~~i~~l~~~~p~~~vGaGTV~~~~~---~~~---a~~aGA~FivsP~~~~~----v~~~a~~~~ip~~~~~~~i  116 (217)
T 3lab_A           47 RTEAGLAAISAIKKAVPEAIVGAGTVCTADD---FQK---AIDAGAQFIVSPGLTPE----LIEKAKQVKLDGQWQGVFL  116 (217)
T ss_dssp             TSTTHHHHHHHHHHHCTTSEEEEECCCSHHH---HHH---HHHHTCSEEEESSCCHH----HHHHHHHHHHHCSCCCEEE
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCCHHH---HHH---HHHHCCCEEECCCCCHH----HHHHHHHCCCCCCCCCCCC
T ss_conf             9906999999999868997599996242799---999---99727888776889999----9999998498644575452


Q ss_pred             ECCCCCCCHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH-CCCCEEEECCH--HHHHHHHHHCCC
Q ss_conf             54655421011002232222---23332227889999860-79969998123--899999997889
Q gi|254780348|r  248 VTENDDPVLALAFRKKNINI---IYCDCRDLKKLLTILVG-RGVTSLLVEGG--AAVAHSFINSRL  307 (364)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~v---i~~~~~dl~~iL~~L~~-~gi~~iLVEGG--~~l~~sfl~~~L  307 (364)
                      - .-..+.........|.+.   +..+.......++.|.. ..--.++--||  ..-+..||+++-
T Consensus       117 P-G~~TptEi~~A~~~G~~~vK~FPA~~~gg~~~lk~l~~p~p~~~~~ptGGV~~~n~~~yl~~g~  181 (217)
T 3lab_A          117 P-GVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPN  181 (217)
T ss_dssp             E-EECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHSTT
T ss_pred             C-CCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCC
T ss_conf             7-8588679999997699959964011237899998620358998287337989899999996898


No 79 
>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A
Probab=43.81  E-value=7  Score=18.04  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=19.4

Q ss_pred             CHHHHHHHHHHCCCCEEEEC------CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             27889999860799699981------23899999997889889999960
Q gi|254780348|r  274 DLKKLLTILVGRGVTSLLVE------GGAAVAHSFINSRLVDSIILYRS  316 (364)
Q Consensus       274 dl~~iL~~L~~~gi~~iLVE------GG~~l~~sfl~~~LvDEl~ifia  316 (364)
                      .+-..-+.|.++|..+|.+=      .|+.  -..|+...+|+++++=+
T Consensus       228 Tl~~aa~~Lk~~GA~~V~~~aTHglfs~~a--~e~l~~s~i~~ivvTnT  274 (326)
T 2h06_A          228 TICHAADKLLSAGATRVYAILTHGIFSGPA--ISRINNACFEAVVVTNT  274 (326)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEECCCTTH--HHHHHHSCEEEEEEETT
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCHH--HHHHHCCCCCEEEECCC
T ss_conf             799999999857998656886434458179--99986479988998688


No 80 
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=42.02  E-value=7.9  Score=17.69  Aligned_cols=27  Identities=22%  Similarity=0.516  Sum_probs=20.7

Q ss_pred             CCCHHHHHHHHC-CCCEEEEECCCCCCCCCC
Q ss_conf             521055565301-343246630101211012
Q gi|254780348|r   84 RSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG  113 (364)
Q Consensus        84 ktppC~~~ii~~-gIk~Vvi~~~DPnp~v~g  113 (364)
                      ||||-+..|.++ ||++   |+.+|+....|
T Consensus         1 KtPP~s~llkkaagi~k---Gs~~p~~~~vG   28 (67)
T 1qa6_A            1 KTPPAAVLLKKAAGIES---GSGEPNRNKVA   28 (67)
T ss_dssp             CCSCHHHHHHHHHTCSC---CCCTTSSCCCC
T ss_pred             CCCCHHHHHHHHHCCCC---CCCCCCCCCHH
T ss_conf             98988999999978897---88999983220


No 81 
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 1rbv_A 1rbt_A 1rbs_A 1kva_A 1kvb_A ...
Probab=41.57  E-value=16  Score=15.63  Aligned_cols=44  Identities=23%  Similarity=0.138  Sum_probs=25.7

Q ss_pred             CCCCCCCCE---EEEEEECCEEE--EEEECCCCCCCHHHHHHHHHHCCHH
Q ss_conf             821888964---79998699899--9984388769848999999730010
Q gi|254780348|r   23 GLTSTNPSV---ACLIVKDGIVI--GRGVTAYGGCPHAEVQALEEAGEEA   67 (364)
Q Consensus        23 g~t~pNP~V---g~viv~~g~ii--~~g~~~~~G~~HAE~~al~~~~~~~   67 (364)
                      |.+.+||-.   |+|++.+|...  +.++.. ....-||..|+-.|-..+
T Consensus        11 GS~~~N~g~~G~G~vi~~~~~~~~~~~~~~~-~Tnn~aEl~Ai~~Al~~~   59 (155)
T 1jl1_A           11 GSALGNPGPGGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVALEAL   59 (155)
T ss_dssp             EEESSTTEEEEEEEEEEETTEEEEEEEEEEE-ECHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCCCEEEEEEEEECCEEEEEECCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf             6888999826999999989968999547686-657999999998777765


No 82 
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=40.11  E-value=15  Score=15.74  Aligned_cols=28  Identities=7%  Similarity=0.188  Sum_probs=10.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             32222233322278899998607996999
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLL  291 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iL  291 (364)
                      .+++++.+.... ...+..|.+.||.=+.
T Consensus        64 ~~v~~vi~~~iG-~~~~~~L~~~GI~v~~   91 (124)
T 1eo1_A           64 NGVKAVIASSPG-PNAFEVLNELGIKIYR   91 (124)
T ss_dssp             TTCCEEEECCSS-HHHHHHHHHHTCEEEE
T ss_pred             CCCCEEEECCCC-HHHHHHHHHCCCEEEE
T ss_conf             799899987669-8899999987999998


No 83 
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=39.99  E-value=13  Score=16.16  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=25.5

Q ss_pred             CCHHHHHHHHHH-CCHHCCCEEEEECCCCCCCCCCCH
Q ss_conf             984899999973-001069889990573211575210
Q gi|254780348|r   52 CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPP   87 (364)
Q Consensus        52 ~~HAE~~al~~~-~~~~~~atlyvtLEPC~h~Gktpp   87 (364)
                      ..|+-...+++. .+...++-+.|-+|||.+..+++|
T Consensus        58 eaH~i~~~ve~~l~~~~~~~~v~iHveP~~~~~~~~p   94 (94)
T 3byp_A           58 EAHRLCDELERALAQAFPGLQATIHVEPEGERKRTNP   94 (94)
T ss_dssp             HHHHHHHHHHHHHHHHSTTEEEEEEEEECC-------
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCC
T ss_conf             9999999999999965899779999898983532795


No 84 
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=39.91  E-value=9  Score=17.32  Aligned_cols=41  Identities=10%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             105556530134324663010121101243311001898896
Q gi|254780348|r   86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD  127 (364)
Q Consensus        86 ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~  127 (364)
                      ..+.+++-..|+||+.+.+-=| +.++.+..++|+++|++|.
T Consensus        97 ~A~~~AL~~lg~krIav~TPY~-~~v~~~~~~~~~~~G~eVv  137 (223)
T 2dgd_A           97 ESVYELLKKLNVRKLWIGTPYI-KERTLEEVEWWRNKGFEIV  137 (223)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSC-HHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHHCCEEEE
T ss_conf             9999999972998079967886-5778999999996791375


No 85 
>1rdu_A Conserved hypothetical protein; structure determination, structural proteomics, atnos, candid, joint center for structural genomics (JCSG); NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=39.81  E-value=17  Score=15.46  Aligned_cols=10  Identities=30%  Similarity=0.425  Sum_probs=3.4

Q ss_pred             CCCCCCCCEE
Q ss_conf             1100189889
Q gi|254780348|r  117 QWLSQKGIIV  126 (364)
Q Consensus       117 ~~L~~~GI~V  126 (364)
                      ..|+++||+|
T Consensus        77 ~~L~~~GI~v   86 (116)
T 1rdu_A           77 ETLKAAGVKV   86 (116)
T ss_dssp             HHHHTTTCEE
T ss_pred             HHHHHCCCEE
T ss_conf             9999889999


No 86 
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=39.71  E-value=17  Score=15.45  Aligned_cols=21  Identities=24%  Similarity=0.620  Sum_probs=15.2

Q ss_pred             CCCCCEEEEEEECCEEEEEEE
Q ss_conf             888964799986998999984
Q gi|254780348|r   26 STNPSVACLIVKDGIVIGRGV   46 (364)
Q Consensus        26 ~pNP~Vg~viv~~g~ii~~g~   46 (364)
                      ...|.+++|.+++|+|++.|-
T Consensus        18 ~~~~~~~~i~I~~g~I~~VG~   38 (81)
T 3ggm_A           18 PSQPEVSAIAITDGLITAVGG   38 (81)
T ss_dssp             TTCSEESEEEEETTEEEEEES
T ss_pred             CCCCEEEEEEEECCEEEEECC
T ss_conf             997178499999999999768


No 87 
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=38.18  E-value=8.1  Score=17.62  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=95.5

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHCCH--HCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC-----
Q ss_conf             99998438876984899999973001--06988999057321157521055565301343246630101211012-----
Q gi|254780348|r   41 VIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----  113 (364)
Q Consensus        41 ii~~g~~~~~G~~HAE~~al~~~~~~--~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~g-----  113 (364)
                      +|+--|-. .| ..+|+..+-+.=.+  ..+..+.|-  |-.-  --+.+.+.+.....+.+-+|+.|-...-.|     
T Consensus        27 ~IagNWKM-N~-~~~~~~~~~~~l~~~~~~~~~v~i~--Pp~~--~l~~~~~~l~~~~~~~i~lGAQnvs~~~~GAfTGE  100 (271)
T 3krs_A           27 FVGGNFKC-NG-TKESLKTLIDSFKQVESSNSEVYVF--PTSL--HISLVKEFFGNDHPGVFKIGSQNISCTGNGAFTGE  100 (271)
T ss_dssp             EEEEECCB-CC-CHHHHHHHHHHHTTCCCCSSEEEEE--CCGG--GHHHHHHHHCSSSCSCEEECBSCCCSSCSBSCTTC
T ss_pred             EEEECCCC-CC-CHHHHHHHHHHHHCCCCCCCCEEEE--CCHH--HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf             78881222-68-9999999999976336689969998--9877--89999999841577513676232445679887452


Q ss_pred             CCCCCCCCCCCEEEECCCCHHHHHH--------HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             4331100189889622210123200--------12222011342220110102787720211365322221013566676
Q gi|254780348|r  114 RGLQWLSQKGIIVDRMMESEGKIFL--------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL  185 (364)
Q Consensus       114 kGi~~L~~~GI~V~~~~~~~~~~ln--------~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~  185 (364)
                      =+.+.|++.|++-.-+-..|-+.+.        +-+......+.- +++-+..|++-+-   .       +........+
T Consensus       101 ISa~mLkd~G~~yvIIGHSERR~~f~Etd~~V~~Kv~~al~~gl~-pI~CIGEt~~er~---~-------g~~~~vv~~Q  169 (271)
T 3krs_A          101 VSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLK-IVLCIGESLSERE---T-------GKTNDVIQKQ  169 (271)
T ss_dssp             CCHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCE-EEEEECCCHHHHH---T-------TCHHHHHHHH
T ss_pred             CCHHHHHHHCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCHHHHH---H-------HHHHHHHHHH
T ss_conf             449999982789699645142024677789999999999873880-8999467067642---1-------3288899999


Q ss_pred             HHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHH----CC
Q ss_conf             42014403663122013454235443444434421576446689980221003444670798546554210110----02
Q gi|254780348|r  186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FR  261 (364)
Q Consensus       186 lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~----~~  261 (364)
                      ++.....+-        +...+      .-.+-|+-.|  ..++.+....+-....    +|      ......    ..
T Consensus       170 l~~~~~~~~--------~~~~i------iIAYEPvWAI--GTG~~as~~~i~~~~~----~I------r~~l~~~~~~~~  223 (271)
T 3krs_A          170 LTEALKDVS--------DLSNL------VIAYEPIWAI--GTGVVATPGQAQEAHA----FI------REYVTRMYNPQV  223 (271)
T ss_dssp             HHHHTTTCC--------CCTTE------EEEECCGGGS--SSSCCCCHHHHHHHHH----HH------HHHHHHHSCHHH
T ss_pred             HHHHHCCCC--------CHHCE------EEEECCEECC--CCCCCCCHHHHHHHHH----HH------HHHHHHHHCHHH
T ss_conf             999860756--------50058------9983860014--7899999899999999----99------999999837312


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             2322222333222788999986079969998123899999997
Q gi|254780348|r  262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..++.+++.++.+.+.+-+.+...++..+|| ||+.|-.+|++
T Consensus       224 a~~i~ILYGGSV~~~Na~~l~~~~~vDG~LV-GgASL~~~F~~  265 (271)
T 3krs_A          224 SSNLRIIYGGSVTPDNCNELIKCADIDGFLV-GGASLKPTFAK  265 (271)
T ss_dssp             HHHCCEEECSCCCTTTHHHHHHSTTCCEEEE-SGGGGSTTHHH
T ss_pred             CCCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH
T ss_conf             2676488648889879999966889897885-10547989999


No 88 
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=37.71  E-value=12  Score=16.53  Aligned_cols=28  Identities=32%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf             2101356667642014403663122013
Q gi|254780348|r  175 TGFISKNQVHLLRAQSDAILVGIGTVLA  202 (364)
Q Consensus       175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~  202 (364)
                      +++.+......+|.++.-+++|++||+.
T Consensus        51 ~t~~a~~~i~~l~~~~p~~~vGaGTVl~   78 (224)
T 1vhc_A           51 RSEAAADAIRLLRANRPDFLIAAGTVLT   78 (224)
T ss_dssp             TSTTHHHHHHHHHHHCTTCEEEEESCCS
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9803999999999868991896202045


No 89 
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis}
Probab=36.04  E-value=15  Score=15.75  Aligned_cols=17  Identities=6%  Similarity=0.098  Sum_probs=6.6

Q ss_pred             CHHHHHHHHHHHHCCCC
Q ss_conf             10135666764201440
Q gi|254780348|r  176 GFISKNQVHLLRAQSDA  192 (364)
Q Consensus       176 ~~~sr~~vh~lRa~~Da  192 (364)
                      ++..|.+-++||.-+.-
T Consensus        27 d~~d~ery~~l~~~~~~   43 (206)
T 3o8s_A           27 DVYDMERFEEIRQIAAE   43 (206)
T ss_dssp             -----------------
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             87689999999999999


No 90 
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=35.65  E-value=12  Score=16.51  Aligned_cols=41  Identities=17%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHCCCCEEEEC-------CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             227889999860799699981-------23899999997889889999960
Q gi|254780348|r  273 RDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRS  316 (364)
Q Consensus       273 ~dl~~iL~~L~~~gi~~iLVE-------GG~~l~~sfl~~~LvDEl~ifia  316 (364)
                      ..+...-+.|.++|.++|.+=       +++   ..-|+...+|+++.+=+
T Consensus       286 gTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A---~~~l~~s~i~~Iv~TnT  333 (379)
T 2ji4_A          286 DSFLAAAETLKERGAYKIFVMATHGLLSSDA---PRRIEESAIDEVVVTNT  333 (379)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEEECCCTTH---HHHHHHSSCCEEEEESS
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCCHH---HHHHHHCCCCEEEECCC
T ss_conf             6699999999976998379999797688169---99997289998998688


No 91 
>1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2
Probab=34.99  E-value=11  Score=16.76  Aligned_cols=19  Identities=26%  Similarity=0.440  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHCCCCEEEE
Q ss_conf             2788999986079969998
Q gi|254780348|r  274 DLKKLLTILVGRGVTSLLV  292 (364)
Q Consensus       274 dl~~iL~~L~~~gi~~iLV  292 (364)
                      ++.++++.|.+.|+.+|.|
T Consensus       179 ~~~~~l~~l~~~g~~~v~v  197 (264)
T 1qgo_A          179 EVDILIDSLRDEGVTGVHL  197 (264)
T ss_dssp             CHHHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHHHCCCCEEEE
T ss_conf             8899999987457987999


No 92 
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1
Probab=34.84  E-value=13  Score=16.30  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=28.1

Q ss_pred             CCCCCEEEEEEECCEEEEEE---------ECCCCC----CCHHHHHHHHHHCCHHCC
Q ss_conf             88896479998699899998---------438876----984899999973001069
Q gi|254780348|r   26 STNPSVACLIVKDGIVIGRG---------VTAYGG----CPHAEVQALEEAGEEARG   69 (364)
Q Consensus        26 ~pNP~Vg~viv~~g~ii~~g---------~~~~~G----~~HAE~~al~~~~~~~~~   69 (364)
                      .|+..|+|||.++|+++-.-         |....|    +...|..|++.+.+.. |
T Consensus         6 ~P~v~V~~vi~~~~kvLlv~r~~~~~~~~w~~PgG~ie~gEs~~~aa~REv~EEt-G   61 (153)
T 2b0v_A            6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEET-G   61 (153)
T ss_dssp             CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHH-S
T ss_pred             CCCEEEEEEEEECCEEEEEEEECCCCCCEEECCEEEECCCCCHHHHHHHHHHHHH-C
T ss_conf             6874999999969999999984699999899982376699798999999999987-8


No 93 
>3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1}
Probab=33.82  E-value=17  Score=15.36  Aligned_cols=42  Identities=24%  Similarity=0.218  Sum_probs=26.9

Q ss_pred             CCCCCEEEEEEECCEEEEEEECC--------CCC----CCHHHHHHHHHHCCHH
Q ss_conf             88896479998699899998438--------876----9848999999730010
Q gi|254780348|r   26 STNPSVACLIVKDGIVIGRGVTA--------YGG----CPHAEVQALEEAGEEA   67 (364)
Q Consensus        26 ~pNP~Vg~viv~~g~ii~~g~~~--------~~G----~~HAE~~al~~~~~~~   67 (364)
                      .|+-.|+|||.++|+++-.-.+.        ..|    ....|.-|++...+..
T Consensus         3 ~P~v~v~~vi~~~gkvLlv~r~~~~~~~W~lPgG~ve~gEs~~~aa~RE~~EEt   56 (153)
T 3dku_A            3 KPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEET   56 (153)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEESSSCEEEECSEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEEECCEEEEEEECCCCCCCEECCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             985899999990999999997789998099977685189999999989999985


No 94 
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A*
Probab=33.61  E-value=11  Score=16.70  Aligned_cols=41  Identities=22%  Similarity=0.494  Sum_probs=31.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             322222333222788999986079969998123899999997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus       202 ~~v~ILYGGSV~~~N~~~i~~~~~iDG~LV-GgASL~~~F~~  242 (248)
T 1o5x_A          202 NQIRILYGGSVNTENCSSLIQQEDIDGFLV-GNASLKESFVD  242 (248)
T ss_dssp             HHSEEEECSCCCTTTHHHHHTSTTCCEEEE-CGGGGSTTHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-ECHHCCHHHHH
T ss_conf             774099668999879999856889896896-02308889999


No 95 
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=31.70  E-value=22  Score=14.70  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH-HHHHHH
Q ss_conf             2322222333222788999986079969998123899-999997
Q gi|254780348|r  262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV-AHSFIN  304 (364)
Q Consensus       262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l-~~sfl~  304 (364)
                      ..++.+++.++.+.+.+-+.+...++..+|| ||+.| ..+|++
T Consensus       204 ~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LV-G~aSl~~~~F~~  246 (256)
T 1aw2_A          204 AKNVVIQYGGSVKPENAAAYFAQPDIDGALV-GGAALDAKSFAA  246 (256)
T ss_dssp             HHHCEEEECSCCCTTTHHHHTTSTTCCEEEE-SGGGGCHHHHHH
T ss_pred             CCCCEEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf             1773099668889879999966899887996-268659899999


No 96 
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=31.34  E-value=17  Score=15.50  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHCCCCEEEEHHHHCC
Q ss_conf             2101356667642014403663122013
Q gi|254780348|r  175 TGFISKNQVHLLRAQSDAILVGIGTVLA  202 (364)
Q Consensus       175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~  202 (364)
                      +++.+......++.++.-+++|++||+.
T Consensus        50 ~tp~a~~~i~~l~~~~p~~~iGaGTV~~   77 (214)
T 1wbh_A           50 RTECAVDAIRAIAKEVPEAIVGAGTVLN   77 (214)
T ss_dssp             CSTTHHHHHHHHHHHCTTSEEEEESCCS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9867999999999878996795245453


No 97 
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=31.03  E-value=18  Score=15.33  Aligned_cols=17  Identities=24%  Similarity=0.378  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHCCCCEEEE
Q ss_conf             788999986079969998
Q gi|254780348|r  275 LKKLLTILVGRGVTSLLV  292 (364)
Q Consensus       275 l~~iL~~L~~~gi~~iLV  292 (364)
                      ..+ ++.+.+.|+..+||
T Consensus       215 ~ed-~~~l~~~G~davLI  231 (247)
T 1a53_A          215 RNE-IEELRKLGVNAFLI  231 (247)
T ss_dssp             HHH-HHHHHHTTCCEEEE
T ss_pred             HHH-HHHHHHCCCCEEEE
T ss_conf             999-99999779999998


No 98 
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=31.01  E-value=17  Score=15.47  Aligned_cols=40  Identities=28%  Similarity=0.496  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             32222233322278899998607996999812389999999
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI  303 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl  303 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|+
T Consensus       198 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~eF~  237 (244)
T 2v5b_A          198 AQLRILYGGSVTAKNARTLYQMRDINGFLV-GGASLKPEFV  237 (244)
T ss_dssp             HHCEEEECSCCCHHHHHHHHTSTTCCEEEE-SGGGSSTTHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH
T ss_conf             774189668888748999966889896895-2164588999


No 99 
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=30.85  E-value=19  Score=15.10  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=19.2

Q ss_pred             CCCC-CCHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCCCEE
Q ss_conf             1575-21055565301343246630101211--0124331100189889
Q gi|254780348|r   81 HYGR-SPPCAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIV  126 (364)
Q Consensus        81 h~Gk-tppC~~~ii~~gIk~Vvi~~~DPnp~--v~gkGi~~L~~~GI~V  126 (364)
                      |+|. +..+.+.|-....+-+||++-..|.-  -+-.=++.|++.||+|
T Consensus       229 HHGS~~s~s~~fl~~v~P~~~viS~g~~n~~~hP~~~~l~~l~~~gi~~  277 (547)
T 2bib_A          229 HHDTNKSNTKDFIKNLSPSLIVQTSDSLPWKNGVDSEYVNWLKERGIER  277 (547)
T ss_dssp             TTBCSSSSCHHHHHHHCCSEEEESBSSCSBSSSBCHHHHHHHHTTTCEE
T ss_pred             CCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             8898867679899754997999927877778898989999999879979


No 100
>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}
Probab=30.80  E-value=17  Score=15.51  Aligned_cols=41  Identities=22%  Similarity=0.398  Sum_probs=31.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             322222333222788999986079969998123899999997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus       201 ~~v~ILYGGSVn~~N~~~i~~~~~vDG~LV-G~ASL~~eF~~  241 (259)
T 2i9e_A          201 NSIRIQYGGSVTAANCKELASQPDIDGFLV-GGASLKPEFVD  241 (259)
T ss_dssp             HHCEEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH
T ss_conf             666389738878748999956789886896-02657989999


No 101
>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1
Probab=30.76  E-value=13  Score=16.20  Aligned_cols=41  Identities=22%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             322222333222788999986079969998123899999997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..+.+++.++.+...+-+.+...++..+|| ||+.|-..|++
T Consensus       221 ~~v~ILYGGSVn~~N~~~i~~~~~vDG~LV-GgASLd~eF~~  261 (275)
T 1mo0_A          221 DATRIIYGGSVTADNAAELGKKPDIDGFLV-GGASLKPDFVK  261 (275)
T ss_dssp             HHSCEEEESSCCTTTHHHHTTSTTCCEEEE-SGGGGSTHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH
T ss_conf             855389568989879999956889886994-04756866999


No 102
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=30.72  E-value=11  Score=16.84  Aligned_cols=42  Identities=10%  Similarity=0.223  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEE
Q ss_conf             22278899998607996999812------389999999788988999996
Q gi|254780348|r  272 CRDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYR  315 (364)
Q Consensus       272 ~~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifi  315 (364)
                      +..+...-+.|.++|..+|.+=.      |+ -...+.++ .+||++.+=
T Consensus       218 GgTl~~aa~~Lk~~GA~~V~~~~THgifs~~-a~~~l~~~-~i~~iv~Tn  265 (284)
T 1u9y_A          218 GGTMATAVKLLKEQGAKKIIAACVHPVLIGD-ALNKLYSA-GVEEVVGTD  265 (284)
T ss_dssp             SHHHHHHHHHHHHTTCCSEEEEEEECCCCTT-HHHHHHHH-TCSEEEEET
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHC-CCCEEEECC
T ss_conf             6779999999986699869999979738847-99999738-999899818


No 103
>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis}
Probab=30.71  E-value=16  Score=15.62  Aligned_cols=41  Identities=24%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             322222333222788999986079969998123899999997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus       207 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~ef~~  247 (257)
T 2dp3_A          207 QHIRIIYGGSANGSNCEKLGQCPNIDGFLV-GGASLKPEFMT  247 (257)
T ss_dssp             HHSEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH
T ss_conf             863099678889879999957889886995-01535966999


No 104
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=29.83  E-value=22  Score=14.70  Aligned_cols=43  Identities=7%  Similarity=-0.129  Sum_probs=27.6

Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             732115752105556530134324663010121101243311001898896
Q gi|254780348|r   77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD  127 (364)
Q Consensus        77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~  127 (364)
                      .+|.+.++.++=.+  .-.|+.-|+++..-|      +....|.++||+|-
T Consensus        50 ~~~~~~~~~~~~~~--~l~gc~vVi~~~IG~------~a~~~L~~~GI~~i   92 (145)
T 1p90_A           50 DVALAEDKNAWRVE--QIQDCQVLYVVSIGG------PAAAKVVRAGIHPL   92 (145)
T ss_dssp             GGGGCSSHHHHHHH--HTTTCSEEEESBCCH------HHHHHHHHTTCEEE
T ss_pred             CCCCCCCHHHHHHH--HHCCCCEEEECCCCH------HHHHHHHHCCCEEE
T ss_conf             76765202345677--647997999644694------79999998897899


No 105
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=29.08  E-value=25  Score=14.32  Aligned_cols=14  Identities=14%  Similarity=0.207  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHC-CCC
Q ss_conf             78899998607-996
Q gi|254780348|r  275 LKKLLTILVGR-GVT  288 (364)
Q Consensus       275 l~~iL~~L~~~-gi~  288 (364)
                      ...+.+.+.+. |+.
T Consensus       244 ~~aa~RE~~EEtGl~  258 (341)
T 2qjo_A          244 VEGMLRELKEETRLK  258 (341)
T ss_dssp             HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHCCE
T ss_conf             999989999986863


No 106
>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...
Probab=28.97  E-value=19  Score=15.10  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             322222333222788999986079969998123899999997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      ..+.+++.++.+...+-..+...++..+|| ||+.|-..|++
T Consensus       202 ~~i~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASl~~eF~~  242 (248)
T 1r2r_A          202 QSTRIIYGGSVTGATCKELASQPDVDGFLV-GGASLKPEFVD  242 (248)
T ss_dssp             HHCCEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH
T ss_pred             CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH
T ss_conf             865099747868628999956789897981-07867868999


No 107
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=28.72  E-value=25  Score=14.28  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=16.1

Q ss_pred             CCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf             222788999986079969998123
Q gi|254780348|r  272 CRDLKKLLTILVGRGVTSLLVEGG  295 (364)
Q Consensus       272 ~~dl~~iL~~L~~~gi~~iLVEGG  295 (364)
                      ..+++++++.|.++|+.+++|.|-
T Consensus        33 k~~~~~~l~~l~~qGf~Rv~vdg~   56 (119)
T 3fpn_A           33 KGTHAKTLEDIRKQGYVRVRIDRE   56 (119)
T ss_dssp             CSCCHHHHHHHHHTTCCEEEETTE
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCE
T ss_conf             974899999998588529999999


No 108
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B}
Probab=28.68  E-value=17  Score=15.46  Aligned_cols=42  Identities=21%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             CCHHHHHHHHHHCCCCEEEEC------CHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             227889999860799699981------23899999997889889999960
Q gi|254780348|r  273 RDLKKLLTILVGRGVTSLLVE------GGAAVAHSFINSRLVDSIILYRS  316 (364)
Q Consensus       273 ~dl~~iL~~L~~~gi~~iLVE------GG~~l~~sfl~~~LvDEl~ifia  316 (364)
                      ..+...-+.|.++|.++|.+=      .|+.  ...|+...+|+++.+=+
T Consensus       230 gTi~~aa~~Lk~~GA~~V~~~~THglfs~~a--~e~l~~s~i~~iv~TdT  277 (319)
T 3dah_A          230 GTLCKAAQVLKERGAKQVFAYATHPVLSGGA--ADRIAASALDELVVTDT  277 (319)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEEEEEECCCTTH--HHHHHTSSCSEEEEESS
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEECCCCCHHH--HHHHHHCCCCEEEECCC
T ss_conf             0199999999977998648997466448079--99986189998998789


No 109
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=28.58  E-value=9.7  Score=17.08  Aligned_cols=40  Identities=33%  Similarity=0.583  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             22222333222788999986079969998123899999997
Q gi|254780348|r  264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       264 ~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      .+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus       206 ~v~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASL~~~F~~  245 (255)
T 1b9b_A          206 SIRILYGGSIKPDNFLGLIVQKDIDGGLV-GGASLKESFIE  245 (255)
T ss_dssp             HSEEEEESSCCHHHHTTTSSSTTCCEEEE-SGGGTSTHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHCCCCCCEEEE-CCHHCCHHHHH
T ss_conf             53189888898758999856889997886-22207878999


No 110
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans c-125} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=28.35  E-value=21  Score=14.81  Aligned_cols=44  Identities=18%  Similarity=0.019  Sum_probs=25.2

Q ss_pred             CCCCCCCCCE---EEEEEECCEEEEE-EECCCCCCC-HHHHHHHHHHCCH
Q ss_conf             8821888964---7999869989999-843887698-4899999973001
Q gi|254780348|r   22 VGLTSTNPSV---ACLIVKDGIVIGR-GVTAYGGCP-HAEVQALEEAGEE   66 (364)
Q Consensus        22 ~g~t~pNP~V---g~viv~~g~ii~~-g~~~~~G~~-HAE~~al~~~~~~   66 (364)
                      .|.+.+||=-   |.|+..+|+.+-. |.- ..++. -||..|+-.|=+.
T Consensus        17 DGa~~GNPG~~G~g~v~~~~~~~~~~~g~~-~~~TNN~aEl~Aii~aL~~   65 (142)
T 1zbf_A           17 DVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRY   65 (142)
T ss_dssp             EEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEEEEEECCEEEEEECCC-CCCCCHHHHHHHHHHHHHH
T ss_conf             412599985689999997099899996787-8876379999999999999


No 111
>3clq_A Uncharacterized protein; APC29596.3, conserved protein of unknown function, structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecalis V583}
Probab=27.73  E-value=20  Score=15.04  Aligned_cols=25  Identities=24%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHC
Q ss_conf             6988999057321157521055565301
Q gi|254780348|r   68 RGATAYVTLEPCSHYGRSPPCAQFIIEC   95 (364)
Q Consensus        68 ~~atlyvtLEPC~h~GktppC~~~ii~~   95 (364)
                      +|.   ++|+||-|++--+|-+--+.-+
T Consensus        88 sG~---I~~~Pch~~~aVgPMaGV~Sps  112 (421)
T 3clq_A           88 SGA---ITFSPCHEHDAVGSMAGVTSPN  112 (421)
T ss_dssp             TTC---SEEEEGGGGTBCCSTTCCBCTT
T ss_pred             CCC---CEEECCCCCCCCCCCCCCCCCC
T ss_conf             799---6885665468744542126898


No 112
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=27.34  E-value=18  Score=15.31  Aligned_cols=41  Identities=10%  Similarity=0.156  Sum_probs=31.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             055565301343246630101211012433110018988962
Q gi|254780348|r   87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR  128 (364)
Q Consensus        87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~  128 (364)
                      .+.+++-..|+||+.+.+-=| +.++.+-+++|+++|++|..
T Consensus       136 Ai~~AL~~lgakrIallTPY~-~~v~~~~~~~~~~~G~eV~~  176 (273)
T 2xed_A          136 ALVEGLRALDAQRVALVTPYM-RPLAEKVVAYLEAEGFTISD  176 (273)
T ss_dssp             HHHHHHHHTTCCEEEEEECSC-HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHCCCCCEEEECCCC-HHHHHHHHHHHHHCCEEEEE
T ss_conf             999999964998579974797-89999999999967823655


No 113
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=27.13  E-value=15  Score=15.85  Aligned_cols=40  Identities=23%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             32222233322278899998607996999812389999999
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI  303 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl  303 (364)
                      ..+.+++.++.+++.+-+.+...++..+|| ||+.|-..|+
T Consensus       205 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASl~~eF~  244 (251)
T 2vxn_A          205 AKLRILYGGSVNAANAATLYAKPDINGFLV-GGASLKPEFR  244 (251)
T ss_dssp             HHCEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTTHH
T ss_pred             CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH
T ss_conf             761089678888779999956889896885-2154587899


No 114
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.93  E-value=27  Score=14.07  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=14.5

Q ss_pred             CEEEEECCCCCCCCCCCC--CCCCCCCCCEEE
Q ss_conf             324663010121101243--311001898896
Q gi|254780348|r   98 RRVVVCVDDPDVRVSGRG--LQWLSQKGIIVD  127 (364)
Q Consensus        98 k~Vvi~~~DPnp~v~gkG--i~~L~~~GI~V~  127 (364)
                      ++|++|+.--+...-|.-  ...|+.+|.+|.
T Consensus         4 ~kVvi~~~~~D~H~lG~~~va~~l~~~G~~V~   35 (137)
T 1ccw_A            4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVV   35 (137)
T ss_dssp             CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf             87999946987458999999999998798799


No 115
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=26.90  E-value=19  Score=15.19  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=27.9

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             05556530134324663010121101243311001898896
Q gi|254780348|r   87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD  127 (364)
Q Consensus        87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~  127 (364)
                      .+.+++-..|+||+-+.+.=| +.++.+.+.+|+++|++|.
T Consensus       107 A~~~Al~~lg~krIav~tPY~-~~~~~~~~~~~~~~G~~V~  146 (240)
T 3ixl_A          107 AVLNGLRALGVRRVALATAYI-DDVNERLAAFLAEESLVPT  146 (240)
T ss_dssp             HHHHHHHHTTCSEEEEEESSC-HHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHCCCCCEEECCCCH-HHHHHHHHHHHHHCCCCCC
T ss_conf             999999980998645436764-8999999999997398623


No 116
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica}
Probab=26.58  E-value=26  Score=14.17  Aligned_cols=18  Identities=33%  Similarity=0.735  Sum_probs=14.7

Q ss_pred             EEEEEECCEEEEEEECCC
Q ss_conf             799986998999984388
Q gi|254780348|r   32 ACLIVKDGIVIGRGVTAY   49 (364)
Q Consensus        32 g~viv~~g~ii~~g~~~~   49 (364)
                      |+|+++||+|++.|-...
T Consensus        51 ~~V~I~dGrI~~Ig~~~~   68 (468)
T 3lnp_A           51 HCLLIKDGIILAIEPQSS   68 (468)
T ss_dssp             EEEEEETTEEEEEEETTT
T ss_pred             CEEEEECCEEEEEECCCC
T ss_conf             399999999999708988


No 117
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=26.38  E-value=28  Score=14.00  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=12.2

Q ss_pred             CHHHHHHHHHHCCCCEEEECCH
Q ss_conf             2788999986079969998123
Q gi|254780348|r  274 DLKKLLTILVGRGVTSLLVEGG  295 (364)
Q Consensus       274 dl~~iL~~L~~~gi~~iLVEGG  295 (364)
                      +..++|..|.++|| .+++|||
T Consensus         6 s~~~lL~~l~~~GI-~L~~e~~   26 (78)
T 2jug_A            6 SAGALLAHAASLGV-RLWVEGE   26 (78)
T ss_dssp             SHHHHHHHHHHHTC-EEEEETT
T ss_pred             HHHHHHHHHHHCCC-EEEEECC
T ss_conf             09999999998898-8999899


No 118
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.35  E-value=19  Score=15.07  Aligned_cols=21  Identities=5%  Similarity=0.063  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHCCCCEEEECCH
Q ss_conf             788999986079969998123
Q gi|254780348|r  275 LKKLLTILVGRGVTSLLVEGG  295 (364)
Q Consensus       275 l~~iL~~L~~~gi~~iLVEGG  295 (364)
                      ..++++.+.++|++.+++..|
T Consensus        71 ~~~~v~e~~~~g~k~vw~q~G   91 (122)
T 3ff4_A           71 QLSEYNYILSLKPKRVIFNPG   91 (122)
T ss_dssp             HGGGHHHHHHHCCSEEEECTT
T ss_pred             HHHHHHHHHHCCCCEEEEECC
T ss_conf             899999998539999999369


No 119
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=26.18  E-value=17  Score=15.44  Aligned_cols=23  Identities=13%  Similarity=0.173  Sum_probs=8.6

Q ss_pred             CCCCCCCCCCCCCCCCEEEEECC
Q ss_conf             54235443444434421576446
Q gi|254780348|r  204 DPELTCRLNGLQEHSPMRIILDP  226 (364)
Q Consensus       204 nP~Lt~R~~~~~~~~P~riVld~  226 (364)
                      ++.|+.|+..--++.|.-.|+|.
T Consensus        13 ~~~l~s~V~~HFG~A~~F~I~d~   35 (120)
T 2wfb_A           13 GPGLDGLVDPRFGRAAGFVVVDA   35 (120)
T ss_dssp             SSSTTSBBCSCSTTCSEEEEEET
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             99865541210266788999993


No 120
>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ...
Probab=25.80  E-value=18  Score=15.30  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=30.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH
Q ss_conf             32222233322278899998607996999812389999999
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI  303 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl  303 (364)
                      ..+.+++.++.+++.+-+.+...++..+|| ||+.|-..|+
T Consensus       204 ~~i~ilYGGSV~~~N~~~i~~~~~vDG~LV-GgASl~~eF~  243 (250)
T 2j27_A          204 GELRILYGGSVNGKNARTLYQQRDVNGFLV-GGASLKPEFV  243 (250)
T ss_dssp             HHCCEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTTHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH
T ss_conf             787489568989879999967899996884-3364687999


No 121
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum usda 110} SCOP: b.92.1.4 c.1.9.9
Probab=25.54  E-value=29  Score=13.90  Aligned_cols=15  Identities=27%  Similarity=0.576  Sum_probs=13.5

Q ss_pred             EEEEEECCEEEEEEE
Q ss_conf             799986998999984
Q gi|254780348|r   32 ACLIVKDGIVIGRGV   46 (364)
Q Consensus        32 g~viv~~g~ii~~g~   46 (364)
                      |+|+++||+|++.|-
T Consensus        36 GaV~I~dG~I~aVG~   50 (475)
T 2ood_A           36 GLMVVTDGVIKAFGP   50 (475)
T ss_dssp             EEEEEESSBEEEEEE
T ss_pred             CEEEEECCEEEEEEC
T ss_conf             089998999999817


No 122
>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis}
Probab=25.27  E-value=29  Score=13.87  Aligned_cols=41  Identities=24%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH-HHHH
Q ss_conf             32222233322278899998607996999812389999-9997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH-SFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~-sfl~  304 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-. .|.+
T Consensus       231 ~~v~ILYGGSV~~~N~~~l~~~~~vDG~LV-GgASL~~e~F~~  272 (283)
T 3gvg_A          231 DTVRVLYGGSVNAKNVGDIVAQDDVDGGLV-GGASLDGEHFAT  272 (283)
T ss_dssp             TTCCEEECSCCCTTTHHHHHTSTTCCEEEE-CGGGGSHHHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf             777589548889869999956889885883-156568799999


No 123
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=25.05  E-value=20  Score=14.94  Aligned_cols=28  Identities=21%  Similarity=0.484  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHC-CCCEEEEECCCCCCCCCC
Q ss_conf             7521055565301-343246630101211012
Q gi|254780348|r   83 GRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG  113 (364)
Q Consensus        83 GktppC~~~ii~~-gIk~Vvi~~~DPnp~v~g  113 (364)
                      =||||-+..|.++ ||++   |+.+|+....|
T Consensus         5 ~ktPP~s~llkkaagi~k---Gs~~p~~~~vG   33 (76)
T 1hc8_A            5 TKTPPAAVLLKKAAGIES---GSGEPNRNKVA   33 (76)
T ss_dssp             CCCCCHHHHHHHHHTCSC---CCSSTTTCCCE
T ss_pred             ECCCCHHHHHHHHHCCCC---CCCCCCCEEEE
T ss_conf             758988999999978887---78998871556


No 124
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.60A {Bartonella henselae}
Probab=24.97  E-value=27  Score=14.07  Aligned_cols=41  Identities=22%  Similarity=0.449  Sum_probs=31.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH-HHHH
Q ss_conf             32222233322278899998607996999812389999-9997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH-SFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~-sfl~  304 (364)
                      ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-. +|++
T Consensus       226 ~~v~ILYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~e~F~~  267 (275)
T 3kxq_A          226 AKIRLLYGGSVKPSNAFELLSTAHVNGALI-GGASLKAIDFLT  267 (275)
T ss_dssp             TTSCEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGSSHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf             781099707899879999956889897993-256579899999


No 125
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=24.70  E-value=30  Score=13.82  Aligned_cols=41  Identities=27%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH-HHHHH
Q ss_conf             3222223332227889999860799699981238999-99997
Q gi|254780348|r  263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA-HSFIN  304 (364)
Q Consensus       263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~-~sfl~  304 (364)
                      ..+.+++.++.+++.+-+.+...++..+|| ||+.|- .+|.+
T Consensus       203 ~~i~ilYGGSV~~~N~~~i~~~~~vDG~LV-G~ASl~~~~F~~  244 (252)
T 2btm_A          203 EAIRIQYGGSVKPDNIRDFLAQQQIDGALV-GGASLEPASFLQ  244 (252)
T ss_dssp             TTSEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGSSHHHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH
T ss_conf             566189817788605999956899885884-356568899999


No 126
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=24.35  E-value=30  Score=13.76  Aligned_cols=44  Identities=20%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             CCCHHHHHHHHCCCCEEEEECCCCCCCC----CC---------CCCCCCCCCCCEEE
Q ss_conf             5210555653013432466301012110----12---------43311001898896
Q gi|254780348|r   84 RSPPCAQFIIECGIRRVVVCVDDPDVRV----SG---------RGLQWLSQKGIIVD  127 (364)
Q Consensus        84 ktppC~~~ii~~gIk~Vvi~~~DPnp~v----~g---------kGi~~L~~~GI~V~  127 (364)
                      -|+.=++.+.++|+.+|.|+..-++|.+    .|         ++++.++++|+.|.
T Consensus       107 l~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~~~~~g~~v~  163 (340)
T 1tv8_A          107 LLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVK  163 (340)
T ss_dssp             THHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf             342138999984998885046776588887765105650000379999998799879


No 127
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=23.97  E-value=14  Score=16.08  Aligned_cols=10  Identities=10%  Similarity=0.358  Sum_probs=4.6

Q ss_pred             CHHHHHHHHC
Q ss_conf             1055565301
Q gi|254780348|r   86 PPCAQFIIEC   95 (364)
Q Consensus        86 ppC~~~ii~~   95 (364)
                      |+-.++|+++
T Consensus        40 ~~i~~aL~~a   49 (155)
T 1byr_A           40 PDIMKALVAA   49 (155)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             8999999999


No 128
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=22.59  E-value=33  Score=13.53  Aligned_cols=23  Identities=22%  Similarity=0.104  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHCCCCEEEEHHHHC
Q ss_conf             35666764201440366312201
Q gi|254780348|r  179 SKNQVHLLRAQSDAILVGIGTVL  201 (364)
Q Consensus       179 sr~~vh~lRa~~DaIlvG~~Tv~  201 (364)
                      +.+....++..+|+|+..++|..
T Consensus        41 ~~~iA~~l~~~~DVIISRGgTa~   63 (196)
T 2q5c_A           41 ASKIAFGLQDEVDAIISRGATSD   63 (196)
T ss_dssp             HHHHHHHHTTTCSEEEEEHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCHHHH
T ss_conf             99999975439879998965899


No 129
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=22.54  E-value=12  Score=16.59  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf             22222333222788999986079969998123899999997
Q gi|254780348|r  264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN  304 (364)
Q Consensus       264 ~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~  304 (364)
                      .+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++
T Consensus       202 ~i~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASl~~eF~~  241 (247)
T 1ney_A          202 ELRILYGGSANGSNAVTFKDKADVDGFLV-GGASLKPEFVD  241 (247)
T ss_dssp             HCCEEEESSCCTTTGGGGTTCTTCCEEEE-SGGGGSTHHHH
T ss_pred             CCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHH
T ss_conf             76188778889779999956889995894-03757858999


No 130
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=22.48  E-value=27  Score=14.13  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=18.4

Q ss_pred             CCHHHHHHHHHHHHCC-CCEEEEHHHHCC
Q ss_conf             2101356667642014-403663122013
Q gi|254780348|r  175 TGFISKNQVHLLRAQS-DAILVGIGTVLA  202 (364)
Q Consensus       175 T~~~sr~~vh~lRa~~-DaIlvG~~Tv~~  202 (364)
                      +++.+......+|... +-+++|++||+.
T Consensus        44 ~~p~a~~~I~~l~~~~~~~~~vGaGTV~~   72 (205)
T 1wa3_A           44 TVPDADTVIKELSFLKEKGAIIGAGTVTS   72 (205)
T ss_dssp             TSTTHHHHHHHTHHHHHTTCEEEEESCCS
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             99768999999997318982896300012


No 131
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=21.81  E-value=26  Score=14.15  Aligned_cols=13  Identities=23%  Similarity=0.480  Sum_probs=5.2

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             8899998607996
Q gi|254780348|r  276 KKLLTILVGRGVT  288 (364)
Q Consensus       276 ~~iL~~L~~~gi~  288 (364)
                      .++.+.|.++||.
T Consensus        81 ~~~~~~l~~~gI~   93 (132)
T 2gm2_A           81 TDVLAACLTRGIG   93 (132)
T ss_dssp             HHHHHHHHHHTCE
T ss_pred             HHHHHHHHHCCCE
T ss_conf             9999999987997


No 132
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A
Probab=21.80  E-value=30  Score=13.79  Aligned_cols=42  Identities=12%  Similarity=0.154  Sum_probs=27.4

Q ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCEEEECCC
Q ss_conf             5556530134324663010121101243-3110018988962221
Q gi|254780348|r   88 CAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMME  131 (364)
Q Consensus        88 C~~~ii~~gIk~Vvi~~~DPnp~v~gkG-i~~L~~~GI~V~~~~~  131 (364)
                      .+..+.+.|.+--+++..--|+  .|+- .+.|++.||+.+.+..
T Consensus        43 va~~la~LG~~v~~i~~vG~D~--~G~~i~~~L~~~gI~~~~v~~   85 (330)
T 3iq0_A           43 FIDQVTRLGVPCGIISCVGNDG--FGDINIHRLAADGVDIRGISV   85 (330)
T ss_dssp             HHHHHHHTTCCEEEEEEEESSH--HHHHHHHHHHHTTCBCTTEEE
T ss_pred             HHHHHHHCCCCEEEEEEECCCH--HHHHHHHHHHHCCCEECCCCC
T ss_conf             9999998699879999947977--999999999872934103534


No 133
>3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A*
Probab=21.33  E-value=35  Score=13.37  Aligned_cols=69  Identities=23%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEEC-CCCCCCCCC---CHHHHHHHHCCCCEEE
Q ss_conf             888964799986998999984388769848999999730010698899905-732115752---1055565301343246
Q gi|254780348|r   26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL-EPCSHYGRS---PPCAQFIIECGIRRVV  101 (364)
Q Consensus        26 ~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtL-EPC~h~Gkt---ppC~~~ii~~gIk~Vv  101 (364)
                      ...|..|+|+|+||+|++.|-...  .+.+|       --+++|.+++=-| .+..|.+.+   .|-.+.-...|+..++
T Consensus        21 g~~~~~~dV~I~dg~I~~VG~~~~--~~~~~-------vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~gvtt~~   91 (480)
T 3gip_A           21 GAPRRRADLGVRDGRIAAIGELGA--HPARH-------AWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVV   91 (480)
T ss_dssp             SCCCEECEEEEETTEEEEEECCTT--SCEEE-------EEECTTSEEEECEEESSCCCTTHHHHSTTCHHHHTTTEEEEE
T ss_pred             CCCEEEEEEEEECCEEEEECCCCC--CCCCE-------EEECCCCEEECCCEECCCCCCCCCCCCCCHHHHHHCCEEEEE
T ss_conf             995068899999999999547889--99997-------998999999367111200866334667105567637810687


Q ss_pred             EE
Q ss_conf             63
Q gi|254780348|r  102 VC  103 (364)
Q Consensus       102 i~  103 (364)
                      .+
T Consensus        92 ~~   93 (480)
T 3gip_A           92 VG   93 (480)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             53


No 134
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=21.04  E-value=35  Score=13.33  Aligned_cols=10  Identities=10%  Similarity=0.368  Sum_probs=3.5

Q ss_pred             HCCCCEEEEH
Q ss_conf             0144036631
Q gi|254780348|r  188 AQSDAILVGI  197 (364)
Q Consensus       188 a~~DaIlvG~  197 (364)
                      ...|.+++|.
T Consensus        60 ~~peilliGt   69 (122)
T 2ab1_A           60 KGVQTLVIGR   69 (122)
T ss_dssp             TCCSEEEEEE
T ss_pred             CCCCEEEEEC
T ss_conf             5999999928


No 135
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=20.48  E-value=17  Score=15.50  Aligned_cols=12  Identities=8%  Similarity=0.338  Sum_probs=6.2

Q ss_pred             CCCHHHHHHHHC
Q ss_conf             521055565301
Q gi|254780348|r   84 RSPPCAQFIIEC   95 (364)
Q Consensus        84 ktppC~~~ii~~   95 (364)
                      -|+|++......
T Consensus        82 ~t~~~~r~~~~~   93 (434)
T 1wu7_A           82 ATPSTVRMVTSR   93 (434)
T ss_dssp             SHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHH
T ss_conf             799999999764


No 136
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=20.47  E-value=36  Score=13.25  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEECCHHH-HHHHHHHCCCCC
Q ss_conf             322278899998607996999812389-999999788988
Q gi|254780348|r  271 DCRDLKKLLTILVGRGVTSLLVEGGAA-VAHSFINSRLVD  309 (364)
Q Consensus       271 ~~~dl~~iL~~L~~~gi~~iLVEGG~~-l~~sfl~~~LvD  309 (364)
                      ...+|...++.+.+.|+ +++||-||. .++.+++.-+=|
T Consensus       259 ~pV~f~~~i~~l~~~g~-~~fIEiGP~~~Ls~~i~~~~~~  297 (316)
T 3im9_A          259 SPVQFINSTEWLIDQGV-DHFIEIGPGKVLSGLIKKINRD  297 (316)
T ss_dssp             SCEEHHHHHHHHHHTTE-EEEEEESSSCHHHHHHHHHCSS
T ss_pred             CEEEHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC
T ss_conf             32809999999997699-9999919819999999998189


No 137
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=20.28  E-value=36  Score=13.22  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             1055565301343246630101211012433110018988962
Q gi|254780348|r   86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR  128 (364)
Q Consensus        86 ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~  128 (364)
                      ....+.+++.|++-|.++.-+|.+     -++.++++|+.|..
T Consensus        78 ~~~~~~~~~~~v~~v~~~~g~p~~-----~~~~~~~~g~~v~~  115 (332)
T 2z6i_A           78 EDIVDLVIEEGVKVVTTGAGNPSK-----YMERFHEAGIIVIP  115 (332)
T ss_dssp             HHHHHHHHHTTCSEEEECSSCGGG-----THHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHH-----HHHHHHHHCCEEEE
T ss_conf             999999986699889982889799-----99999970988985


No 138
>2axw_A DRAD invasin; homodimer, beta-sandwich, immunoglobulin-like fold, swapped C-terminal strands, cell invasion; HET: GOL; 1.05A {Escherichia coli} SCOP: b.2.3.2
Probab=20.11  E-value=33  Score=13.50  Aligned_cols=21  Identities=5%  Similarity=0.044  Sum_probs=14.6

Q ss_pred             CEEEEECCCCCCCHHHHHCCC
Q ss_conf             215764466899802210034
Q gi|254780348|r  219 PMRIILDPHFKLSLDSKIIKT  239 (364)
Q Consensus       219 P~riVld~~l~i~~~~~l~~~  239 (364)
                      +..|+.|.+.+++++..+|.-
T Consensus        92 ~FdVv~DGnQ~v~~D~Y~lsv  112 (134)
T 2axw_A           92 FFDVMADGNQDIAPGEYRFSV  112 (134)
T ss_dssp             EEEEEESSSBCCCSEEEEEEE
T ss_pred             EEEEEEECCEECCCCEEEEEE
T ss_conf             799998498872798699998


Done!