Query gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Match_columns 364 No_of_seqs 245 out of 4143 Neff 7.0 Searched_HMMs 23785 Date Mon May 30 09:31:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780348.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2b3z_A Riboflavin biosynthesis 100.0 0 0 857.9 27.9 355 3-358 10-372 (373) 2 2g6v_A Riboflavin biosynthesis 100.0 0 0 825.1 27.1 356 1-358 24-395 (402) 3 2hxv_A Diaminohydroxyphosphori 100.0 0 0 778.9 28.8 343 4-363 11-360 (360) 4 2p4g_A Hypothetical protein; p 100.0 0 0 332.9 15.5 223 135-358 19-262 (270) 5 2azn_A HTP reductase, putative 100.0 1.4E-45 0 325.3 16.7 209 147-358 1-219 (219) 6 1z3a_A TRNA-specific adenosine 100.0 4.3E-39 1.8E-43 282.6 10.9 148 5-161 7-168 (168) 7 2nx8_A TRNA-specific adenosine 100.0 2.1E-37 8.8E-42 271.3 11.0 155 1-163 9-178 (179) 8 2b3j_A TRNA adenosine deaminas 100.0 1.6E-34 6.8E-39 251.8 12.9 139 5-151 5-157 (159) 9 1wwr_A TRNA adenosine deaminas 100.0 1.1E-32 4.6E-37 239.4 12.9 135 6-148 22-169 (171) 10 3kgy_A Bifunctional deaminase- 100.0 2E-32 8.5E-37 237.7 8.9 210 143-356 14-230 (231) 11 2a8n_A Cytidine and deoxycytid 100.0 6.5E-31 2.7E-35 227.4 12.6 129 5-141 2-144 (144) 12 1p6o_A Cytosine deaminase; hyd 100.0 3E-30 1.3E-34 223.0 10.5 131 3-144 10-150 (161) 13 3dh1_A TRNA-specific adenosine 100.0 1.1E-29 4.6E-34 219.2 12.3 143 5-155 24-188 (189) 14 2gd9_A Hypothetical protein YY 100.0 2.1E-30 9E-35 224.0 7.5 184 144-357 4-188 (189) 15 1wkq_A Guanine deaminase; doma 100.0 5.7E-29 2.4E-33 214.4 11.7 138 6-151 10-164 (164) 16 1vq2_A DCMP deaminase, deoxycy 99.9 3E-27 1.3E-31 202.8 10.1 128 7-145 3-190 (193) 17 3jtw_A Dihydrofolate reductase 99.9 6E-27 2.5E-31 200.7 11.5 168 152-356 6-177 (178) 18 2w4l_A DCMP deaminse, deoxycyt 99.9 8.9E-27 3.7E-31 199.5 9.1 136 4-151 10-171 (178) 19 2hvw_A Deoxycytidylate deamina 99.9 9.8E-27 4.1E-31 199.3 8.8 116 5-132 40-177 (184) 20 3ky8_A Putative riboflavin bio 99.9 1.3E-25 5.6E-30 191.6 14.6 179 139-358 13-196 (197) 21 2g84_A Cytidine and deoxycytid 99.9 1.7E-25 7.1E-30 190.9 10.4 133 4-144 25-182 (197) 22 1cz3_A Dihydrofolate reductase 99.8 5.9E-18 2.5E-22 140.0 13.8 161 152-358 3-165 (168) 23 1vdr_A DHFR, dihydrofolate red 98.6 1E-06 4.2E-11 64.2 11.2 157 152-358 3-159 (162) 24 3dfr_A Dihydrofolate reductase 98.4 9.9E-06 4.2E-10 57.5 12.8 152 154-358 3-162 (162) 25 3nrr_A Dihydrofolate reductase 98.3 1.2E-05 4.9E-10 57.0 12.2 159 151-358 14-192 (515) 26 1j3k_A Bifunctional dihydrofol 98.3 3.2E-05 1.3E-09 54.1 14.1 82 273-358 144-230 (280) 27 1kmv_A DHFR, dihydrofolate red 98.3 1.1E-05 4.7E-10 57.2 10.6 128 154-323 6-145 (186) 28 2fzi_A Dihydrofolate reductase 98.2 4.5E-06 1.9E-10 59.8 7.9 133 148-323 3-153 (206) 29 3ix9_A Dihydrofolate reductase 98.2 4.8E-05 2E-09 52.9 12.7 158 151-359 24-188 (190) 30 2bl9_A Dihydrofolate reductase 98.0 0.00021 8.7E-09 48.6 12.4 79 274-356 154-237 (238) 31 3jsu_A Dihydrofolate reductase 97.9 0.0005 2.1E-08 46.0 14.0 82 273-358 144-230 (608) 32 2w3w_A Dihydrofolate reductase 97.8 0.00013 5.3E-09 50.1 9.3 125 148-321 2-128 (167) 33 1zdr_A Dihydrofolate reductase 97.8 0.00035 1.5E-08 47.1 10.8 153 152-359 2-163 (164) 34 3ia4_A Dihydrofolate reductase 97.7 0.0011 4.6E-08 43.8 12.7 151 152-358 3-162 (162) 35 3dau_A Dihydrofolate reductase 97.6 0.00086 3.6E-08 44.4 11.0 151 152-357 2-159 (159) 36 3jwk_A Dihydrofolate reductase 97.6 0.00071 3E-08 45.0 10.4 151 152-358 9-168 (168) 37 3cse_A Dihydrofolate reductase 97.6 0.00037 1.6E-08 46.9 8.9 132 147-320 2-146 (227) 38 1df7_A DHFR, dihydrofolate red 97.4 0.0013 5.4E-08 43.3 9.7 117 152-321 2-120 (159) 39 2z3g_A Blasticidin-S deaminase 97.4 0.0014 5.7E-08 43.1 9.6 94 1-103 1-107 (130) 40 3hj3_A Chain A, crystal struct 97.3 0.0024 1E-07 41.4 9.4 127 149-317 4-137 (521) 41 1aoe_A DHFR, dihydrofolate red 97.1 0.00086 3.6E-08 44.4 6.2 125 149-317 3-136 (192) 42 2w9h_A DHFR, dihydrofolate red 97.1 0.0029 1.2E-07 40.9 8.7 149 153-358 4-159 (159) 43 1r5t_A Cytidine deaminase; zin 96.7 0.012 4.9E-07 36.8 8.9 92 1-99 1-110 (142) 44 3irm_A Bifunctional dihydrofol 96.5 0.0037 1.5E-07 40.2 5.2 143 153-323 24-188 (521) 45 2fr5_A Cytidine deaminase; zin 96.4 0.016 6.9E-07 35.8 8.3 81 9-97 17-111 (146) 46 3dmo_A Cytidine deaminase; str 96.4 0.014 5.8E-07 36.3 7.8 96 4-106 7-117 (138) 47 3b8f_A Putative blasticidin S 95.9 0.029 1.2E-06 34.1 7.2 87 6-102 3-107 (142) 48 2d30_A Cytidine deaminase; pur 95.8 0.042 1.8E-06 33.1 7.8 92 7-106 12-118 (141) 49 2nyt_A Probable C->U-editing e 95.4 0.022 9.2E-07 34.9 5.3 118 28-154 32-171 (190) 50 1uwz_A Cytidine deaminase; CDD 95.4 0.061 2.6E-06 31.9 7.5 91 7-106 3-107 (136) 51 1juv_A DHFR, dihydrofolate red 95.3 0.074 3.1E-06 31.4 7.6 138 157-322 15-154 (193) 52 3mpz_A Cytidine deaminase; ssg 95.3 0.055 2.3E-06 32.3 6.9 87 8-102 26-125 (150) 53 3g8q_A Predicted RNA-binding p 95.2 0.095 4E-06 30.6 8.0 92 26-133 19-110 (278) 54 3oj6_A Blasticidin-S deaminase 95.1 0.19 8.1E-06 28.6 9.3 84 3-96 27-123 (158) 55 1ctt_A Cytidine deaminase; hyd 95.0 0.15 6.5E-06 29.2 8.5 80 9-96 51-140 (294) 56 3ir2_A DNA DC->DU-editing enzy 94.2 0.099 4.2E-06 30.5 6.1 94 52-154 78-184 (207) 57 3lqk_A Dipicolinate synthase s 79.6 1.1 4.5E-05 23.6 2.8 175 96-293 6-195 (201) 58 3lp8_A Phosphoribosylamine-gly 72.6 1.6 6.6E-05 22.4 2.1 103 51-161 31-148 (442) 59 3mcu_A Dipicolinate synthase, 72.2 2 8.6E-05 21.6 2.6 172 97-293 5-193 (207) 60 1vk9_A Conserved hypothetical 71.0 5.2 0.00022 18.9 7.3 95 7-127 14-108 (151) 61 1twd_A Copper homeostasis prot 70.0 3.5 0.00015 20.1 3.4 28 92-119 82-109 (256) 62 1w0m_A TIM, triosephosphate is 67.9 5.2 0.00022 18.9 4.0 50 75-127 66-118 (226) 63 1zcz_A Bifunctional purine bio 62.0 7.7 0.00032 17.8 8.0 94 11-126 216-309 (464) 64 2qk4_A Trifunctional purine bi 61.6 3.2 0.00014 20.3 1.9 79 41-130 29-119 (452) 65 1i4n_A Indole-3-glycerol phosp 58.3 3.6 0.00015 20.0 1.7 31 176-206 210-240 (251) 66 1hg3_A Triosephosphate isomera 57.8 8.4 0.00035 17.5 3.5 28 77-106 71-98 (225) 67 2yrx_A Phosphoribosylglycinami 55.2 6.1 0.00026 18.5 2.4 106 51-162 31-149 (451) 68 3icj_A Uncharacterized metal-d 50.8 7.4 0.00031 17.9 2.3 52 25-83 49-105 (534) 69 2yw2_A Phosphoribosylamine--gl 50.3 7 0.00029 18.1 2.1 107 41-162 5-128 (424) 70 1mxs_A KDPG aldolase; 2-keto-3 50.2 5.4 0.00023 18.8 1.5 28 175-202 60-87 (225) 71 2cxh_A Probable BRIX-domain ri 48.1 13 0.00053 16.3 3.4 19 274-292 71-89 (217) 72 3mjf_A Phosphoribosylamine--gl 48.1 5.9 0.00025 18.5 1.4 103 51-161 13-132 (431) 73 2yx6_A Hypothetical protein PH 47.5 9.6 0.0004 17.1 2.4 32 89-126 56-87 (121) 74 1o13_A Probable NIFB protein; 46.4 10 0.00042 17.0 2.4 11 296-306 87-97 (136) 75 1pii_A N-(5'phosphoribosyl)ant 46.3 5.2 0.00022 18.9 0.9 92 119-210 153-250 (452) 76 2ip4_A PURD, phosphoribosylami 44.9 6.7 0.00028 18.2 1.3 108 41-161 5-126 (417) 77 1dku_A Protein (phosphoribosyl 44.3 8 0.00034 17.6 1.6 42 273-316 231-278 (317) 78 3lab_A Putative KDPG (2-keto-3 44.0 7.8 0.00033 17.7 1.5 122 175-307 47-181 (217) 79 2h06_A Ribose-phosphate pyroph 43.8 7 0.00029 18.0 1.3 41 274-316 228-274 (326) 80 1qa6_A Ribosomal protein L11; 42.0 7.9 0.00033 17.7 1.3 27 84-113 1-28 (67) 81 1jl1_A Ribonuclease HI; RNAse 41.6 16 0.00067 15.6 3.9 44 23-67 11-59 (155) 82 1eo1_A Hypothetical protein MT 40.1 15 0.00065 15.7 2.6 28 263-291 64-91 (124) 83 3byp_A CZRB protein; membrane 40.0 13 0.00056 16.2 2.2 36 52-87 58-94 (94) 84 2dgd_A 223AA long hypothetical 39.9 9 0.00038 17.3 1.3 41 86-127 97-137 (223) 85 1rdu_A Conserved hypothetical 39.8 17 0.00071 15.5 4.3 10 117-126 77-86 (116) 86 3ggm_A Uncharacterized protein 39.7 17 0.00071 15.4 3.1 21 26-46 18-38 (81) 87 3krs_A Triosephosphate isomera 38.2 8.1 0.00034 17.6 0.9 220 41-304 27-265 (271) 88 1vhc_A Putative KHG/KDPG aldol 37.7 12 0.00049 16.5 1.6 28 175-202 51-78 (224) 89 3o8s_A Nudix hydrolase, ADP-ri 36.0 15 0.00064 15.7 2.0 17 176-192 27-43 (206) 90 2ji4_A Phosphoribosyl pyrophos 35.6 12 0.0005 16.5 1.4 41 273-316 286-333 (379) 91 1qgo_A CBIK protein, anaerobic 35.0 11 0.00046 16.8 1.1 19 274-292 179-197 (264) 92 2b0v_A Nudix hydrolase; struct 34.8 13 0.00053 16.3 1.4 43 26-69 6-61 (153) 93 3dku_A Putative phosphohydrola 33.8 17 0.00074 15.4 2.0 42 26-67 3-56 (153) 94 1o5x_A TIM, triosephosphate is 33.6 11 0.00047 16.7 1.0 41 263-304 202-242 (248) 95 1aw2_A Triosephosphate isomera 31.7 22 0.00092 14.7 2.2 42 262-304 204-246 (256) 96 1wbh_A KHG/KDPG aldolase; lyas 31.3 17 0.0007 15.5 1.6 28 175-202 50-77 (214) 97 1a53_A IGPS, indole-3-glycerol 31.0 18 0.00074 15.3 1.7 17 275-292 215-231 (247) 98 2v5b_A Triosephosphate isomera 31.0 17 0.00071 15.5 1.6 40 263-303 198-237 (244) 99 2bib_A CBPE, teichoic acid pho 30.9 19 0.0008 15.1 1.8 46 81-126 229-277 (547) 100 2i9e_A Triosephosphate isomera 30.8 17 0.0007 15.5 1.5 41 263-304 201-241 (259) 101 1mo0_A TIM, triosephosphate is 30.8 13 0.00055 16.2 1.0 41 263-304 221-261 (275) 102 1u9y_A RPPK;, ribose-phosphate 30.7 11 0.00044 16.8 0.5 42 272-315 218-265 (284) 103 2dp3_A Triosephosphate isomera 30.7 16 0.00067 15.6 1.4 41 263-304 207-247 (257) 104 1p90_A NAFY protein, hypotheti 29.8 22 0.00092 14.7 2.0 43 77-127 50-92 (145) 105 2qjo_A Bifunctional NMN adenyl 29.1 25 0.001 14.3 3.7 14 275-288 244-258 (341) 106 1r2r_A TIM, triosephosphate is 29.0 19 0.0008 15.1 1.5 41 263-304 202-242 (248) 107 3fpn_A Geobacillus stearotherm 28.7 25 0.0011 14.3 2.6 24 272-295 33-56 (119) 108 3dah_A Ribose-phosphate pyroph 28.7 17 0.00071 15.5 1.2 42 273-316 230-277 (319) 109 1b9b_A TIM, protein (triosepho 28.6 9.7 0.00041 17.1 -0.0 40 264-304 206-245 (255) 110 1zbf_A Ribonuclease H-related 28.4 21 0.00089 14.8 1.7 44 22-66 17-65 (142) 111 3clq_A Uncharacterized protein 27.7 20 0.00082 15.0 1.4 25 68-95 88-112 (421) 112 2xed_A Putative maleate isomer 27.3 18 0.00075 15.3 1.2 41 87-128 136-176 (273) 113 2vxn_A Triosephosphate isomera 27.1 15 0.00062 15.8 0.7 40 263-303 205-244 (251) 114 1ccw_A Protein (glutamate muta 26.9 27 0.0011 14.1 2.5 30 98-127 4-35 (137) 115 3ixl_A Amdase, arylmalonate de 26.9 19 0.00078 15.2 1.2 40 87-127 107-146 (240) 116 3lnp_A Amidohydrolase family p 26.6 26 0.0011 14.2 1.9 18 32-49 51-68 (468) 117 2jug_A TUBC protein; docking d 26.4 28 0.0012 14.0 2.5 21 274-295 6-26 (78) 118 3ff4_A Uncharacterized protein 26.3 19 0.00081 15.1 1.2 21 275-295 71-91 (122) 119 2wfb_A Putative uncharacterize 26.2 17 0.00072 15.4 0.9 23 204-226 13-35 (120) 120 2j27_A Triosephosphate isomera 25.8 18 0.00075 15.3 0.9 40 263-303 204-243 (250) 121 2ood_A BLR3880 protein; PSI-II 25.5 29 0.0012 13.9 2.7 15 32-46 36-50 (475) 122 3gvg_A Triosephosphate isomera 25.3 29 0.0012 13.9 2.3 41 263-304 231-272 (283) 123 1hc8_A Ribosomal protein L11; 25.1 20 0.00085 14.9 1.1 28 83-113 5-33 (76) 124 3kxq_A Triosephosphate isomera 25.0 27 0.0011 14.1 1.7 41 263-304 226-267 (275) 125 2btm_A TIM, protein (triosepho 24.7 30 0.0012 13.8 1.9 41 263-304 203-244 (252) 126 1tv8_A MOAA, molybdenum cofact 24.3 30 0.0013 13.8 2.1 44 84-127 107-163 (340) 127 1byr_A Protein (endonuclease); 24.0 14 0.00058 16.1 0.1 10 86-95 40-49 (155) 128 2q5c_A NTRC family transcripti 22.6 33 0.0014 13.5 6.7 23 179-201 41-63 (196) 129 1ney_A TIM, triosephosphate is 22.5 12 0.00048 16.6 -0.6 40 264-304 202-241 (247) 130 1wa3_A 2-keto-3-deoxy-6-phosph 22.5 27 0.0011 14.1 1.3 28 175-202 44-72 (205) 131 2gm2_A Conserved hypothetical 21.8 26 0.0011 14.1 1.2 13 276-288 81-93 (132) 132 3iq0_A Putative ribokinase II; 21.8 30 0.0013 13.8 1.4 42 88-131 43-85 (330) 133 3gip_A N-acyl-D-glutamate deac 21.3 35 0.0015 13.4 3.3 69 26-103 21-93 (480) 134 2ab1_A Hypothetical protein; H 21.0 35 0.0015 13.3 2.1 10 188-197 60-69 (122) 135 1wu7_A Histidyl-tRNA synthetas 20.5 17 0.0007 15.5 -0.1 12 84-95 82-93 (434) 136 3im9_A MCAT, MCT, malonyl COA- 20.5 36 0.0015 13.2 2.7 38 271-309 259-297 (316) 137 2z6i_A Trans-2-enoyl-ACP reduc 20.3 36 0.0015 13.2 2.0 38 86-128 78-115 (332) 138 2axw_A DRAD invasin; homodimer 20.1 33 0.0014 13.5 1.4 21 219-239 92-112 (134) No 1 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Probab=100.00 E-value=0 Score=857.87 Aligned_cols=355 Identities=34% Similarity=0.527 Sum_probs=331.9 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCC Q ss_conf 87789999999999998708821888964799986998999984388769848999999730010698899905732115 Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 (364) Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~ 82 (364) ++++|++||++||++|++++|.|+|||+||||||+||+|||+|||+++|+||||++||++|+++++|||||||||||||+ T Consensus 10 ~~~~d~~~m~~Al~lA~~~~g~t~pNP~VG~viv~~g~ii~~G~h~~~G~~HAEv~Al~~a~~~~~gat~yvTLEPC~h~ 89 (373) T 2b3z_A 10 HGSMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHY 89 (373) T ss_dssp ---CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTTCEEEESSCCCCCC T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCC T ss_conf 66399999999999998547888999989999998998999886899997579999999617002597799983687777 Q ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHH Q ss_conf 752105556530134324663010121101243311001898896-2221012320012222011342220110102787 Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 (364) Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlD 161 (364) |||||||++||++||||||||+.||||+|+|||+++|+++||+|+ +++++||.++|++||++++++||||++|+|+|+| T Consensus 90 GktppC~~~ii~~gikrVv~~~~DPnp~v~g~g~~~L~~~gI~V~~g~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlD 169 (373) T 2b3z_A 90 GKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLD 169 (373) T ss_dssp SSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETT T ss_pred CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC T ss_conf 88717889999709999999556578354885289998789989857218988876665556522589769999985687 Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCC Q ss_conf 72021136532222101356667642014403663122013454235443444434421576446689980221003444 Q gi|254780348|r 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 (364) Q Consensus 162 GkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~ 241 (364) ||||..+|+|+||||++||.++|+||+++||||||++|++.|||+||||..+. .+||+|||+|+++++|.++++|++.. T Consensus 170 Gkia~~~g~s~wIT~~~sr~~vh~lRa~~DAIlvG~~Tv~~DnP~Lt~R~~~~-~~~P~riV~d~~l~~~~~~~i~~~~~ 248 (373) T 2b3z_A 170 GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV-TKQPVRVILDTVLSIPEDAKVICDQI 248 (373) T ss_dssp SBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTC-CSCCEEEEECTTCCCCTTCHHHHSCS T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCHHHEECCCC T ss_conf 65333468740157777889998755525358982288445387022457775-67981898435554241233000478 Q ss_pred CCEEEEECCCCCCCHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEE Q ss_conf 670798546554210110022322222333--222788999986079969998123899999997889889999960743 Q gi|254780348|r 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 (364) Q Consensus 242 ~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~--~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~i 319 (364) ...+++++.+.+..+...+...++.++... ..++.++|+.|+++||++||||||++|+++||+++||||+++|+||++ T Consensus 249 ~~~~i~~~~~~~~~~~~~l~~~~~~vi~~~~~~l~l~~il~~L~~~Gi~~lLVEGG~~L~~sfL~~~LvDEl~l~iAPki 328 (373) T 2b3z_A 249 APTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKL 328 (373) T ss_dssp SCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHTCCSEEEEEEESBC T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCHHEEEEEECCCE T ss_conf 87035513665467789888618714431001345799999987759888999057999999997776108876887831 Q ss_pred ECCCCCCCCCCCCCC-----CCCCEEEEEEEECCCEEEEEEECC Q ss_conf 268875233345454-----446405446886793699995074 Q gi|254780348|r 320 IGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358 (364) Q Consensus 320 lG~~g~~s~~~~~~~-----~~~~~l~~~~~ig~Dv~~~y~~k~ 358 (364) +|+++.++++..... ...|++++++++|+|++++|++.. T Consensus 329 lGg~~~~~~~~~~~~~~l~~a~~l~l~~~~~~G~Di~i~~rP~k 372 (373) T 2b3z_A 329 IGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKPTK 372 (373) T ss_dssp CCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEEC- T ss_pred ECCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC T ss_conf 07888777557656358756666666479998985999999787 No 2 >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Probab=100.00 E-value=0 Score=825.12 Aligned_cols=356 Identities=36% Similarity=0.517 Sum_probs=317.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC Q ss_conf 96877899999999999987088218889647999869989999843887698489999997300106988999057321 Q gi|254780348|r 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 (364) Q Consensus 1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~ 80 (364) |-|..+|++||++|+++|++++|.|+|||+||||||+||+|||+|||+.+|+||||++||++|+++++|+|||||||||| T Consensus 24 ~~~~~~d~~~m~~a~~~a~~~~g~t~pnp~Vg~viv~~~~ii~~g~~~~~g~~HAE~~a~~~~~~~~~~~~~yvtLEPC~ 103 (402) T 2g6v_A 24 LYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCS 103 (402) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHHGGGGGSSCEEESSCCC- T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHCHHCCCCEEEEECCCCC T ss_conf 32010899999999999985689889999889999989989999968999986999999997253217988999778865 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC Q ss_conf 15752105556530134324663010121101243311001898896-22210123200122220113422201101027 Q gi|254780348|r 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 (364) Q Consensus 81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~S 159 (364) |+||||||+++|+++||||||||+.||||+|+|||+++||++||+|+ +++++||.+||++||++++++||||++|+|+| T Consensus 104 h~GkTppC~~~i~~~gikrVv~~~~DPnp~v~GkGi~~Lr~aGI~V~~g~l~~e~~~ln~~f~~~~~~~rP~V~lK~A~S 183 (402) T 2g6v_A 104 HHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGAS 183 (402) T ss_dssp ------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTTTHHHHHTHHHHHHHHSSSCEEEEEEEEC T ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCHHHCCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 68998369999997246689995788981106963354631796896560455567788999999744571799999522 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCC-----------CCCCEEEEECCCC Q ss_conf 87720211365322221013566676420144036631220134542354434444-----------3442157644668 Q gi|254780348|r 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHF 228 (364) Q Consensus 160 lDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~-----------~~~P~riVld~~l 228 (364) +|||||..+|+++||||++||.++|+||+++||||||++|++.|||+||||..+.. .+||.|||+|+++ T Consensus 184 lDGkIa~~~g~s~wIT~~~sr~~vH~lRa~~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~~~~~~~~~~~P~riVld~~~ 263 (402) T 2g6v_A 184 LDGRTAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN 263 (402) T ss_dssp TTCBBCC---CCSCSSCHHHHHHHHHHHHHCSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSSCCGGGCCCCEEEEECTTC T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC T ss_conf 77764445787443657889999999886200043267843123883335036630101112554456898415667888 Q ss_pred CCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC Q ss_conf 99802210034446707985465542101100223222223332227889999860799699981238999999978898 Q gi|254780348|r 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 (364) Q Consensus 229 ~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~Lv 308 (364) ++++++++|+.. .++|++++..............+.....+..||+++|+.|+++||++||||||++|+++||+++|| T Consensus 264 rl~~~~~if~~~--~~~ii~~s~~~~~~~~~~~~~~~~~~~~~~ldl~~iL~~L~~~Gi~~LLVEGG~~L~~sfL~~~Lv 341 (402) T 2g6v_A 264 RVTPVHRIVQQP--GETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLV 341 (402) T ss_dssp CCCTTSGGGSSS--SCEEEEESSCCCSCCCTTEEEEECCEETTEECHHHHHHHHHHTTCCEEEECCCHHHHHHHHHHTCC T ss_pred CCCHHHHHHCCC--CCEEEEECCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCC T ss_conf 998467631378--847997240445665202203686324774049999999987699999994279999999876981 Q ss_pred CEEEEEEECEEECCCCCCCCCC----CCCCCCCCEEEEEEEECCCEEEEEEECC Q ss_conf 8999996074326887523334----5454446405446886793699995074 Q gi|254780348|r 309 DSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 (364) Q Consensus 309 DEl~ifiaP~ilG~~g~~s~~~----~~~~~~~~~l~~~~~ig~Dv~~~y~~k~ 358 (364) ||+++|+||+++|+++.+.+.. .+....+|++++++++|+|++++|++-. T Consensus 342 DEl~i~iAPkilG~~~~~~~~~~~~~~l~da~~l~l~~~~~lG~Di~l~yvp~~ 395 (402) T 2g6v_A 342 DELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGAS 395 (402) T ss_dssp CEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEEEETTEEEEEEECC- T ss_pred CEEEEEECCHHHCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC T ss_conf 399989877644899977666667017756537767579998984999999655 No 3 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Probab=100.00 E-value=0 Score=778.91 Aligned_cols=343 Identities=35% Similarity=0.534 Sum_probs=306.8 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHH---CCHHCCCEEEEECCCCC Q ss_conf 778999999999999870882188896479998699899998438876984899999973---00106988999057321 Q gi|254780348|r 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCS 80 (364) Q Consensus 4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~---~~~~~~atlyvtLEPC~ 80 (364) +.|+++||++|+++|+++.|.|+|||+||||||+||+|||+|||+.+|+||||++||++| +++++|+|||||||||| T Consensus 11 ~~~~~~~m~~A~~~A~~~~g~t~pNP~VG~viv~~g~ii~~g~~~~~g~~HAE~~ai~~a~~~~~~~~g~tlyvTLEPC~ 90 (360) T 2hxv_A 11 HHMYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCD 90 (360) T ss_dssp HHHHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC T ss_conf 57999999999999975177768999889999989989999838999998999999999876274668978999878843 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCC Q ss_conf 15752105556530134324663010121101243311001898896-22210123200122220113422201101027 Q gi|254780348|r 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 (364) Q Consensus 81 h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~S 159 (364) |+||||||+++||++||+|||||+.||||+ +|+|+++|+++||+|. ++++++|.++|++||++++++||||++|+|+| T Consensus 91 h~GktppC~~~ii~~gi~~Vv~~~~Dpnp~-~g~g~~~L~~aGI~V~~g~~~~~~~~ln~~f~~~~~~~rP~V~~K~A~S 169 (360) T 2hxv_A 91 HHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYAST 169 (360) T ss_dssp SCSSSCCHHHHHHHHTCCEEEEEECCCCGG-GCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEE T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCCC-CCCCEEHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEEEEC T ss_conf 557776488899972899899971437623-5775201104683899800244332344213445425895399987675 Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCC Q ss_conf 87720211365322221013566676420144036631220134542354434444344215764466899802210034 Q gi|254780348|r 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 (364) Q Consensus 160 lDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~ 239 (364) +|||||..+|+|+|||++.+| .+|+||+++||||||++|++.|||+||||+++ .++|.|||+|++++++.++..+.. T Consensus 170 lDGkia~~~g~s~~it~~~~r-~~h~lRa~~DAIlvG~~Tv~~DnP~Lt~R~~~--~~~P~rvIld~~~~l~~~~~~~~~ 246 (360) T 2hxv_A 170 LDGKIADHRGDSKWITDKLRF-KVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFE 246 (360) T ss_dssp TTSEEECTTSCCTTSCSTTHH-HHHHHHHHSSEEEEEHHHHHHHCCCCCCCSTT--SCCCEEEEECTTCTTTTCCCGGGS T ss_pred CCCCEECCCCCCEECCHHHHH-HHHHHHHHCCCEEECCCCHHHCCCCCEEECCC--CCCCCEEECCCCCCCCHHHHHEEC T ss_conf 998734467873551310035-78999986586043367343208610145557--878944755755667745540230 Q ss_pred CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEE Q ss_conf 44670798546554210110022322222333222788999986079969998123899999997889889999960743 Q gi|254780348|r 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 (364) Q Consensus 240 ~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~i 319 (364) . ..+++|++++.+..+...+.. .....|++.+|+.|+++||++||||||++|+++||++ +||+++|+||++ T Consensus 247 ~-~~~~ii~t~~~~~~~~~~~~~------~~~~~dl~~iL~~L~~~Gi~slLVEGG~~L~~sfl~~--~Dei~~f~APki 317 (360) T 2hxv_A 247 E-NARVIVFTESEEAEYPPHVEK------ALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDH--ADVVFGFYSTKI 317 (360) T ss_dssp S-SSCEEEEESCSSCCCCTTSEE------EECCCCHHHHHHHHHHTTCCEEEECCCHHHHHHHGGG--CSEEEEEEESCC T ss_pred C-CCCEEEEECCCCCCCCHHHHH------HCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH--CCEEEEEECCHH T ss_conf 4-773158842531013046665------0245899999999986799899992369999999985--999999988777 Q ss_pred ECCCCCCCCC---CCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCC Q ss_conf 2688752333---4545444640544688679369999507431257 Q gi|254780348|r 320 IGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 (364) Q Consensus 320 lG~~g~~s~~---~~~~~~~~~~l~~~~~ig~Dv~~~y~~k~~c~~~ 363 (364) ||+ |.+.+. .......+|++.+++++|+|++++|++ |+|| T Consensus 318 lG~-G~~~~~~~~~~l~~~~~l~l~~~~~~G~Di~i~~rP---c~~~ 360 (360) T 2hxv_A 318 FGK-GLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP---CSRE 360 (360) T ss_dssp CSS-SEETTTTCCCCTTSCCCEEEEEEEEETTEEEEEEEE---C--- T ss_pred HCC-CCCCCCCCHHHHHHCCCCEEEEEEEECCEEEEEEEE---CCCC T ss_conf 569-853346421111215366887899999989999996---8999 No 4 >2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics; 2.30A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Probab=100.00 E-value=0 Score=332.89 Aligned_cols=223 Identities=15% Similarity=0.135 Sum_probs=181.7 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCC- Q ss_conf 3200122220113422201101027877202113653222210135666764201440366312201345423544344- Q gi|254780348|r 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG- 213 (364) Q Consensus 135 ~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~- 213 (364) ...+.+|+.+...+||||++|+|+|+|||+ ..+|.|+||||+.+|.++|+||+++||||||++|++.|||+|++|..+ T Consensus 19 ~~~~~~~~~~~~~~~P~v~~~~a~SlDGka-~~~G~s~~is~~~dr~~~h~LRa~~DaIlvG~~Tv~~D~p~l~~r~~~~ 97 (270) T 2p4g_A 19 EQIVYGALPLTTINEPECRAIAITSINGSA-TLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGI 97 (270) T ss_dssp HHHHHSSCCTHHHHCCEEEEEEEEETTSBS-CBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCHHH T ss_pred HHHHCCCCCCCCCCCCEEEEEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHH T ss_conf 676404247777999629999998475664-7899776879999999999999879989988130114476543246566 Q ss_pred -------CCCCCCEEEEECCCCCCCHHHHHCCCCCC---CEEEEECCCCCCC-----HHHHCCCCCCCCCCCC--CCCHH Q ss_conf -------44344215764466899802210034446---7079854655421-----0110022322222333--22278 Q gi|254780348|r 214 -------LQEHSPMRIILDPHFKLSLDSKIIKTALL---APVIIVTENDDPV-----LALAFRKKNINIIYCD--CRDLK 276 (364) Q Consensus 214 -------~~~~~P~riVld~~l~i~~~~~l~~~~~~---~~~ii~~~~~~~~-----~~~~~~~~~v~vi~~~--~~dl~ 276 (364) ...++|.+||+|+++++|+++++|+.... .++++++.+.++. +...+...+++++..+ ..||+ T Consensus 98 ~~~r~~~g~~~~P~~vVld~~~~~~~~~~l~~~~~~~~~~~iv~t~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~ 177 (270) T 2p4g_A 98 KNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLK 177 (270) T ss_dssp HHHHHHTTCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHH T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHH T ss_conf 55544216578996898257778885322213677774137998257654235567888887524726750788887999 Q ss_pred HHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCC--CCCCCCCEEEEEEEECCC-EEEE Q ss_conf 8999986079969998123899999997889889999960743268875233345--454446405446886793-6999 Q gi|254780348|r 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCVRRDYFGSD-VCLE 353 (364) Q Consensus 277 ~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~--~~~~~~~~l~~~~~ig~D-v~~~ 353 (364) .+|+.|+++|+++||||||++|+++||+++||||+++|+||+++|+++.+.+... ......+++.......++ ++++ T Consensus 178 ~~l~~L~~~Gi~~vLVEGG~~L~~s~l~~gLiDEl~l~iaP~llG~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~lflR 257 (270) T 2p4g_A 178 IAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLSSSPNGLIFSR 257 (270) T ss_dssp HHHHHHHTTTCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEEECTTCCEEEE T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEE T ss_conf 99999875698727996719999999872767389999878876799866656777555564634689999249979999 Q ss_pred EEECC Q ss_conf 95074 Q gi|254780348|r 354 YIGKN 358 (364) Q Consensus 354 y~~k~ 358 (364) |++.. T Consensus 258 Yr~~r 262 (270) T 2p4g_A 258 YKVIR 262 (270) T ss_dssp EEECC T ss_pred EEECC T ss_conf 87825 No 5 >2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Probab=100.00 E-value=1.4e-45 Score=325.34 Aligned_cols=209 Identities=27% Similarity=0.452 Sum_probs=176.9 Q ss_pred CCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECC Q ss_conf 34222011010278772021136532222101356667642014403663122013454235443444434421576446 Q gi|254780348|r 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226 (364) Q Consensus 147 ~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~ 226 (364) .+||||++|+|||+|||||..+|.+ ||||++++.++|.||+++||||+|++|++.|||+|++|..+ ..++|.+||+|+ T Consensus 1 ~krP~V~~~~a~SlDG~ia~~~g~~-~is~~~~~~~~~~lR~~~dail~G~~T~~~d~p~l~~r~~~-~~~~~~~vV~d~ 78 (219) T 2azn_A 1 EKKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIK-SDRNPVRIVVDS 78 (219) T ss_dssp CCCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSC-CSSCCEEEEECT T ss_pred CCCCEEEEEEEECCCCCEECCCCCC-CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCEEEEEC T ss_conf 9988899998886867888999987-75897999999999986497999557256658742031455-457981899628 Q ss_pred CCCCCHHHHHCCCCCCCEEEEECCCCCC---CHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHCCCCEEEECCHHHHHHH Q ss_conf 6899802210034446707985465542---10110022322222333--222788999986079969998123899999 Q gi|254780348|r 227 HFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 (364) Q Consensus 227 ~l~i~~~~~l~~~~~~~~~ii~~~~~~~---~~~~~~~~~~v~vi~~~--~~dl~~iL~~L~~~gi~~iLVEGG~~l~~s 301 (364) +++++.++++|+..... +++++..... .+.......++.++..+ ..|++++++.|+++|+++||||||++|+++ T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~ 157 (219) T 2azn_A 79 KLRVPLNARVLNKDAKT-IIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWG 157 (219) T ss_dssp TCCCCTTCGGGSTTSCE-EEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHH T ss_pred CCCCCHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH T ss_conf 98778435665126864-89951554313488887630673799732489879999999998779978998010999999 Q ss_pred HHHCCCCCEEEEEEECEEECCCCCCCCCCCCC-----CCCCCEEEEEEEECCCEEEEEEECC Q ss_conf 99788988999996074326887523334545-----4446405446886793699995074 Q gi|254780348|r 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEYIGKN 358 (364) Q Consensus 302 fl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~-----~~~~~~l~~~~~ig~Dv~~~y~~k~ 358 (364) ||++|||||+++|+||+++|+++.+++++... ...+|++.+++++|+|++++|+.|+ T Consensus 158 fl~~gliDEl~l~iaP~llG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~vkk 219 (219) T 2azn_A 158 MFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKVKK 219 (219) T ss_dssp HHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEEETTEEEEEEEECC T ss_pred HHHHHHCCEEEEEECCEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEEEECCEEEEEEEECC T ss_conf 98876347899998663457988766447778568646557877279998999999999739 No 6 >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 Probab=100.00 E-value=4.3e-39 Score=282.64 Aligned_cols=148 Identities=28% Similarity=0.402 Sum_probs=135.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCC----CCHHHHHHHHHHCCH-----HCCCEEEEE Q ss_conf 78999999999999870882188896479998699899998438876----984899999973001-----069889990 Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE-----ARGATAYVT 75 (364) Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G----~~HAE~~al~~~~~~-----~~~atlyvt 75 (364) -.|+.||++||++|+++ .+.|||+||||||+||+||++|+|+..| ..|||++|++.+... +.++++|+| T Consensus 7 ~~h~~~M~~Ai~~A~~a--~~~~~~pVGaVIV~~g~Ii~~g~n~~~~~~~~~~HAE~~a~~~a~~~~~~~~l~~~~ly~t 84 (168) T 1z3a_A 7 FSHEYWMRHALTLAKRA--WDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVT 84 (168) T ss_dssp TSHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEE T ss_pred CCHHHHHHHHHHHHHHH--CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCCEECCC T ss_conf 78999999999999985--4189998999999899899997301145676527899987776654145627547402216 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC----CEEE-ECCCCHHHHHHHHHHHHCCCCCC Q ss_conf 573211575210555653013432466301012110124331100189----8896-22210123200122220113422 Q gi|254780348|r 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVD-RMMESEGKIFLHAYLTRQVEKRS 150 (364) Q Consensus 76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G----I~V~-~~~~~~~~~ln~~f~~~~~~~rP 150 (364) |||| |||+.+|+++||+|||||..|||+.+.|+|.+.|+++| ++|. |++++||.+|++.|| .++.+|| T Consensus 85 ~ePC------~mC~~ai~~agI~rVvyg~~dp~~~~~g~~~~~~~~~~~~~~~ev~~gvl~~e~~~l~~~Ff-~~~r~~p 157 (168) T 1z3a_A 85 LEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF-RMRRQEI 157 (168) T ss_dssp ECCC------HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHH-HHHHTTC T ss_pred CCCC------CCHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHH-HHHHCCC T ss_conf 9997------33898995368878999867889887631778877346799978991839999999999999-9996796 Q ss_pred HHHHHHCCCHH Q ss_conf 20110102787 Q gi|254780348|r 151 HITLKIAVSQD 161 (364) Q Consensus 151 ~V~lK~A~SlD 161 (364) ||++|+|+|+| T Consensus 158 ~~~~K~a~s~d 168 (168) T 1z3a_A 158 KAQKKAQSSTD 168 (168) T ss_dssp C---------- T ss_pred CCHHHHHHCCC T ss_conf 41667974789 No 7 >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Probab=100.00 E-value=2.1e-37 Score=271.27 Aligned_cols=155 Identities=27% Similarity=0.400 Sum_probs=140.9 Q ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC----CCCHHHHHHHHHHCC-----HHCCC Q ss_conf 9687-7899999999999987088218889647999869989999843887----698489999997300-----10698 Q gi|254780348|r 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE-----EARGA 70 (364) Q Consensus 1 m~~~-~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~----G~~HAE~~al~~~~~-----~~~~a 70 (364) |++| +.|++||++|+++|+++ .+.+||+||||||+||+|||+|||... +..|||++|+++|.. .+.|+ T Consensus 9 m~~~~~~d~~fM~~Al~~A~~a--~~~g~~PVGaVIV~~g~IIa~g~N~~~~~~~~~~HAe~~ai~~a~~~~~~~~l~~~ 86 (179) T 2nx8_A 9 MPYSLEEQTYFMQEALKESEKS--LQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDT 86 (179) T ss_dssp CCSCHHHHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTE T ss_pred CCCCHHHHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 5678178999999999999986--03699988999998999999861513058997232999889999986088737676 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC----CCEEE-ECCCCHHHHHHHHHHHHC Q ss_conf 8999057321157521055565301343246630101211012433110018----98896-222101232001222201 Q gi|254780348|r 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK----GIIVD-RMMESEGKIFLHAYLTRQ 145 (364) Q Consensus 71 tlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~----GI~V~-~~~~~~~~~ln~~f~~~~ 145 (364) |+||||||| |.|+.+|+.+||+|||+|..||++.+.|.+..+|++. +++|. |++++||..|++.||.+. T Consensus 87 ~lyvTlEPC------~mC~~ai~~a~I~rVvy~~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~e~~~Llk~Ff~~~ 160 (179) T 2nx8_A 87 TLFVTIEPC------VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQG 160 (179) T ss_dssp EEEEEECCB------HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHH T ss_pred EEECCCCCC------HHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH T ss_conf 244576866------79999999828684999537998774563888754131289978991868999999999999999 Q ss_pred CCCCCHHHHHHCCCHHHH Q ss_conf 134222011010278772 Q gi|254780348|r 146 VEKRSHITLKIAVSQDNM 163 (364) Q Consensus 146 ~~~rP~V~lK~A~SlDGk 163 (364) ..++|+++.|+|+|.|++ T Consensus 161 r~k~~~~~~~~~~~~d~~ 178 (179) T 2nx8_A 161 RERKKIAKHLIKEQSDPF 178 (179) T ss_dssp HHHHHHHHHHHHC----- T ss_pred HHCCCCHHHHHHHHCCCC T ss_conf 860970025688746999 No 8 >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Probab=100.00 E-value=1.6e-34 Score=251.79 Aligned_cols=139 Identities=31% Similarity=0.436 Sum_probs=125.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE Q ss_conf 78999999999999870882188896479998699899998438----87698489999997300-----1069889990 Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT 75 (364) Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt 75 (364) +.|++||++||++|+++. +.|||+||||||++|++|+.|+++ ..+.+|||++|+.++.. ...++|+|+| T Consensus 5 ~~D~~fM~~Al~~A~~a~--~~g~~pVGaViV~~~~ii~~g~~~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tly~t 82 (159) T 2b3j_A 5 TNDIYFMTLAIEEAKKAA--QLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159) T ss_dssp HHHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE T ss_pred CHHHHHHHHHHHHHHHHC--CCCCCCEEEEEEECCEEEEEEECCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 679999999999999854--069998999998699389876231005886335899999999999838877788557403 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHHHHHCCCCCC Q ss_conf 5732115752105556530134324663010121101243311001898----896-22210123200122220113422 Q gi|254780348|r 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAYLTRQVEKRS 150 (364) Q Consensus 76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f~~~~~~~rP 150 (364) ||||. +|+.+|+++||+|||||+.|||+.++|+|..+|+++|| +|. |++++||.+|++.||++.+.++| T Consensus 83 ~EPC~------mC~~ai~~agI~~Vv~g~~dp~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~Ll~~ff~~~R~~~~ 156 (159) T 2b3j_A 83 LEPCV------MCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKK 156 (159) T ss_dssp ECCCH------HHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC-- T ss_pred CCCCH------HHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 79968------999999996999899997489987556388998726999998798284999999999999999985048 Q ss_pred H Q ss_conf 2 Q gi|254780348|r 151 H 151 (364) Q Consensus 151 ~ 151 (364) - T Consensus 157 ~ 157 (159) T 2b3j_A 157 S 157 (159) T ss_dssp - T ss_pred C T ss_conf 9 No 9 >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Probab=100.00 E-value=1.1e-32 Score=239.43 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=120.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC----CCCCHHHHHHHHHHCC-----HHCCCEEEEEC Q ss_conf 89999999999998708821888964799986998999984388----7698489999997300-----10698899905 Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTL 76 (364) Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~----~G~~HAE~~al~~~~~-----~~~~atlyvtL 76 (364) .|++||++||++|+++ .+.++|+||||||+||+||++|++.. .+.+|||++|+++|.. .++|+|+|||| T Consensus 22 ~~e~fM~~Al~~A~~a--~~~g~~PVGaVIV~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~~~tlY~Tl 99 (171) T 1wwr_A 22 GKEYFLKVALREAKRA--FEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTL 99 (171) T ss_dssp SHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESS T ss_pred CHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 9999999999999986--13699989999998996986533664469997314999999999976086556786885315 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC----CEEEECCCCHHHHHHHHHHHHCCCC Q ss_conf 73211575210555653013432466301012110124331100189----8896222101232001222201134 Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEK 148 (364) Q Consensus 77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~G----I~V~~~~~~~~~~ln~~f~~~~~~~ 148 (364) |||.+ |+.+|+++||+|||||+.||++.+.|++++.|++.+ ++|.+++.+||.+|++.||...+++ T Consensus 100 EPC~m------C~~ai~~sgI~rVvyg~~D~~~g~~~~~~~~l~~~~~~~~~~v~~g~~eE~~~Ll~~FF~~~R~~ 169 (171) T 1wwr_A 100 EPCIM------CSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKKLRNN 169 (171) T ss_dssp CCBHH------HHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEECCCHHHHHHHHHHHHHHHHT T ss_pred CCCHH------HHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHC T ss_conf 87888------99999985888599986479987434488887643248998899734999999999999998620 No 10 >3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl} Probab=99.97 E-value=2e-32 Score=237.65 Aligned_cols=210 Identities=14% Similarity=0.053 Sum_probs=152.5 Q ss_pred HHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCC-----C Q ss_conf 20113422201101027877202113653222210135666764201440366312201345423544344443-----4 Q gi|254780348|r 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----H 217 (364) Q Consensus 143 ~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~-----~ 217 (364) ..+..+.|+|++|+|+|+|||||..++.++|+|+++++.++|.+|+++|+|++|..|+..|+|.+++|...... . T Consensus 14 ~~~~~~M~~V~~~~a~SLDG~Ia~~~g~~~~l~~~~~~~~~~~~r~~~d~il~g~~T~~~~~~~~~~~~~~~~~~~~~~~ 93 (231) T 3kgy_A 14 NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTF 93 (231) T ss_dssp CTTGGGSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHH T ss_pred HHHHCCCHHHEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCCCEEEE T ss_conf 89987886774888996788404989983565787899999888763698996874144258756556664455514664 Q ss_pred CCEEEEECCCCCCCHHHHHCCCCC--CCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCH Q ss_conf 421576446689980221003444--670798546554210110022322222333222788999986079969998123 Q gi|254780348|r 218 SPMRIILDPHFKLSLDSKIIKTAL--LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 (364) Q Consensus 218 ~P~riVld~~l~i~~~~~l~~~~~--~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG 295 (364) +|..++++.+..++.....+.... ..+.+++++..... .....+..++.........+.+.+.+.|+++|+|||| T Consensus 94 ~~~~~vv~g~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~---~~~~~~~~~~~~~~d~~~~l~~l~~~~G~~~i~veGG 170 (231) T 3kgy_A 94 ERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNP---WVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGG 170 (231) T ss_dssp HTEEEEEEEHHHHHHHHHHSCSSCSCCSEEEEECSSCCCC---EEETTTEEEEEECSCHHHHHHHHHHHHTTSEEEEEEC T ss_pred CCCCCEECCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCC---HHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECH T ss_conf 6778050475323156762777775332036530244430---1203786799917986999999998679983999716 Q ss_pred HHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEE Q ss_conf 8999999978898899999607432688752333454544464054468867936999950 Q gi|254780348|r 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 (364) Q Consensus 296 ~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~ 356 (364) ++|+++||++|||||+++|++|+++|+ |.+.|-........+.+.+...-+..+.++|+| T Consensus 171 g~L~~sfl~agLvDEl~l~iaP~llG~-G~~lf~~~~~~~~~~~l~~~~~~~g~v~LrY~R 230 (231) T 3kgy_A 171 ANVIQQYLNLGLVDELEIALIPVIFGG-GRRLFENLHEPLPQFRIDRVLASPTATHLRYVR 230 (231) T ss_dssp HHHHHHHHHTTCCSEEEEEEESCCCSS-SEESSCSCCSSCCCEEEEEEEECSSCEEEEEEE T ss_pred HHHHHHHHHCCCCCEEEEEEECEEECC-CCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE T ss_conf 999998855895879999990479779-851789998541013755898689849999997 No 11 >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Probab=99.97 E-value=6.5e-31 Score=227.45 Aligned_cols=129 Identities=32% Similarity=0.402 Sum_probs=116.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHCC-----HHCCCEEEEE Q ss_conf 78999999999999870882188896479998699899998438----87698489999997300-----1069889990 Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVT 75 (364) Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~~-----~~~~atlyvt 75 (364) +.|++||++||++|+++. ..++||||||||+||+||++|+|. ..+..|||++|+++|.. ...++|+|+| T Consensus 2 ~~~~~fM~~Al~~A~~a~--~~g~~PvGavIV~~g~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~t 79 (144) T 2a8n_A 2 AERTHFMELALVEARSAG--ERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT 79 (144) T ss_dssp CCHHHHHHHHHHHHHHHH--HTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE T ss_pred CCHHHHHHHHHHHHHHHH--CCCCCCEEEEEEECCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCC T ss_conf 606999999999999863--069998899999899999984203102688640189999999999718873476333256 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHH Q ss_conf 5732115752105556530134324663010121101243311001898----896-22210123200122 Q gi|254780348|r 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAY 141 (364) Q Consensus 76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f 141 (364) +||| |+|+.+|+++||+|||||+.||++.+.|++++.+.+.++ +|. |++++||.+|++.| T Consensus 80 ~EPC------~mC~~ai~~~gI~rVvyg~~d~~~g~~g~~~~~~~~~~~~~~~eV~~Gvl~~E~~~L~~~F 144 (144) T 2a8n_A 80 LEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144) T ss_dssp ECCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC------------- T ss_pred CCCC------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCC T ss_conf 7898------7899999996999899997089977556188987604799998899486899999997479 No 12 >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Probab=99.97 E-value=3e-30 Score=222.99 Aligned_cols=131 Identities=27% Similarity=0.430 Sum_probs=114.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE--ECCEEEEEEECC----CCCCCHHHHHHHHHHC----CHHCCCEE Q ss_conf 8778999999999999870882188896479998--699899998438----8769848999999730----01069889 Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA----YGGCPHAEVQALEEAG----EEARGATA 72 (364) Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv--~~g~ii~~g~~~----~~G~~HAE~~al~~~~----~~~~~atl 72 (364) .|+.|++||++|+++|+++ ....++||||||| ++|+||++||+. ..+.+|||++||++|. ...+|+|| T Consensus 10 ~~~~D~~~M~~A~~~A~~a--~~~g~~PvGaviV~~~~g~Ii~~g~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~l~~~tl 87 (161) T 1p6o_A 10 ASKWDQKGMDIAYEEAALG--YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTL 87 (161) T ss_dssp CCTTHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEE T ss_pred CCHHHHHHHHHHHHHHHHH--HHCCCCCEEEEEEECCCCEEEEEEECEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEE T ss_conf 8799999999999999999--87599998999998599969998613000479997579899998764128976778368 Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH Q ss_conf 990573211575210555653013432466301012110124331100189889622210123200122220 Q gi|254780348|r 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144 (364) Q Consensus 73 yvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~ 144 (364) ||||||| |+|+.+|+.+||+|||||..| ...|.|.+.|+.+|++|.++++++|.+|++.||.. T Consensus 88 yvTlEPC------~mC~~ai~~~gI~rVv~G~~~---~~~~~~~~~l~~~~~~v~~v~~eec~~Ll~~FF~~ 150 (161) T 1p6o_A 88 YTTLSPC------DMCTGAIIMYGIPRCVVGENV---NFKSKGEKYLQTRGHEVVVVDDERCKKIMKQFIDE 150 (161) T ss_dssp EEEECCC------HHHHHHHHHHTCCEEEEEESS---SCCCTHHHHHHHTTCEEEECCCHHHHHHHHHHHHH T ss_pred EECCCCC------HHHHHHHHHHCCCEEEEECCC---CCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHH T ss_conf 8526887------999999999693989993899---87873499998689779863899999999999998 No 13 >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} Probab=99.96 E-value=1.1e-29 Score=219.20 Aligned_cols=143 Identities=22% Similarity=0.303 Sum_probs=121.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECC----CCCCCHHHHHHHHHHC-----------CHHCC Q ss_conf 78999999999999870882188896479998699899998438----8769848999999730-----------01069 Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG-----------EEARG 69 (364) Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~----~~G~~HAE~~al~~~~-----------~~~~~ 69 (364) ++|++||+.||++|+++... .+.+||||||+||+||++||.. ..+..|||++||+.+. ..+.| T Consensus 24 ~~de~~M~~Al~lA~~a~~~--g~~PvGaViV~~g~IIa~g~N~~~~~~d~t~HaEi~ai~~a~~~~~~~~~~~~~~l~~ 101 (189) T 3dh1_A 24 EETEKWMEEAMHMAKEALEN--TEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEH 101 (189) T ss_dssp HHHHHHHHHHHHHHHHHHHT--TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 78999999999999987416--9998899999899899986144555788776489999999999998741125432578 Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC------CCCEEE-ECCCCHHHHHHHHHH Q ss_conf 8899905732115752105556530134324663010121101243311001------898896-222101232001222 Q gi|254780348|r 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ------KGIIVD-RMMESEGKIFLHAYL 142 (364) Q Consensus 70 atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~------~GI~V~-~~~~~~~~~ln~~f~ 142 (364) +||||||||| |.|+.+|+++||+|||||+.||+....|..+..... .+++|. |++++||..|++.|| T Consensus 102 ~tlYtT~EPC------~mCa~ai~~agI~rVvyg~~d~~~g~~g~~~~l~~~~~~~~~~~~~v~~gvl~ee~~~llk~Ff 175 (189) T 3dh1_A 102 TVLYVTVEPC------IMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFY 175 (189) T ss_dssp EEEEEEECCB------HHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHT T ss_pred CEEEECCCCH------HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHH T ss_conf 5468524881------9999999995998799997189988756247877654111389908986958999999999999 Q ss_pred HHCCCCCCHHHHH Q ss_conf 2011342220110 Q gi|254780348|r 143 TRQVEKRSHITLK 155 (364) Q Consensus 143 ~~~~~~rP~V~lK 155 (364) .....++|..-.| T Consensus 176 ~~~r~~~p~~k~k 188 (189) T 3dh1_A 176 KQENPNAPKSKVR 188 (189) T ss_dssp CC----------- T ss_pred HHHCCCCCCCCCC T ss_conf 9866799977768 No 14 >2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis} Probab=99.96 E-value=2.1e-30 Score=223.97 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=141.8 Q ss_pred HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 01134222011010278772021136532222101356667642014403663122013454235443444434421576 Q gi|254780348|r 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223 (364) Q Consensus 144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riV 223 (364) ...+.|| |++|+|+|+|||||..+|.+.|+|++.++. .|.+|+++||||+|++|+..|+|.++.|... ...+|.+++ T Consensus 4 ~~~~~Rk-vi~~~A~SlDG~ia~~~g~~~w~~~~~~~~-~~~~~~~~dail~G~~T~~~~~~~~~~~~~~-~~~~~~~~~ 80 (189) T 2gd9_A 4 NNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMG-FTDFLNQIDTILYGRKSFDLWGQYIPKNEDP-DTEKELWKL 80 (189) T ss_dssp CCCCCCC-EEEEEEECTTSEEECTTSCCTTCCCCTTSC-HHHHHHTEEEEEEEHHHHHHHTTC-----------CCHHHH T ss_pred CCCCCCE-EEEEEEEECCCCEECCCCCCCCCCCHHHHH-HHHHHHHCCCEEECCCEEEEECCCCCCCCCC-CCCCCCCEE T ss_conf 8898681-999999908988799999847758768889-9999986797875672799765757637677-656872212 Q ss_pred ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH Q ss_conf 44668998022100344467079854655421011002232222233322278899998607996999812389999999 Q gi|254780348|r 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364) Q Consensus 224 ld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364) +++. +.++++....... .. ...-..|+.++++.+.+.++++|++|||++++++|+ T Consensus 81 ~~~~----------------~~~v~s~~~~~~~------~~---~~~~~~~~~~~~~~l~~~~~~~v~veGG~~l~~~~l 135 (189) T 2gd9_A 81 VHSK----------------KKYVFSRTQNEID------NQ---AIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFI 135 (189) T ss_dssp HHHS----------------EEEEECCEEETTT------TE---EECCHHHHHHHHHHHHHSCCSEEEEEECHHHHHHHH T ss_pred CCCC----------------CEEEEECCCCCCC------CC---EEEEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHH T ss_conf 2677----------------4141002235566------64---389846889999999974897199967616778776 Q ss_pred HCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEEC Q ss_conf 7889889999960743268875233345454446405446886793-69999507 Q gi|254780348|r 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGK 357 (364) Q Consensus 304 ~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k 357 (364) +++||||+++|++|+++|+ |.+.+ ........|++.+++.++++ ++++|.++ T Consensus 136 ~~glvDel~l~i~P~ilG~-G~~~f-~~~~~~~~l~L~~~~~~~~g~v~l~Y~~~ 188 (189) T 2gd9_A 136 NLGLVDEFRLSIHPVVLGE-GKPLF-IDVKQRINLKMVNTRTFSSGVVQIVYHWN 188 (189) T ss_dssp HTTCCCEEEEEECSEECSS-SEESS-CSCCSCEECEEEEEEECTTSCEEEEEEC- T ss_pred HCCCCCEEEEEEECEEECC-CCCCC-CCCCCCCCCEEEEEEEECCCEEEEEEEEC T ss_conf 4673427899982679889-72267-77777888689788992899899999858 No 15 >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Probab=99.96 E-value=5.7e-29 Score=214.36 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=112.4 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC----CCCHHHHHHHHHHC-----CHHCCCEEEEEC Q ss_conf 899999999999987088218889647999869989999843887----69848999999730-----010698899905 Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG-----EEARGATAYVTL 76 (364) Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~----G~~HAE~~al~~~~-----~~~~~atlyvtL 76 (364) .|++||++|+++|+++.....++| ||||||+||+||++|++... ...|||++||++|. ..+.|+|||||| T Consensus 10 d~e~~M~~Ai~~A~~~~~~g~~~P-vGaVIv~~g~ii~~~~n~~~~~~~~~~HAE~~ai~~a~~~~~~~~l~g~tlYvT~ 88 (164) T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSC 88 (164) T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSS-CEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEE T ss_pred CHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC T ss_conf 999999999999998855799998-8999997998999970010025776501899999999874388775898899866 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCC--------CCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC Q ss_conf 7321157521055565301343246630101211012433--------11001898896222101232001222201134 Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148 (364) Q Consensus 77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi--------~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~ 148 (364) ||| |+|+.+|+++||+|||+|..||++...|-.. ..+.+.++.|.++..+|+..+++.| .+...+ T Consensus 89 EPC------~mC~~ai~~agI~~Vvyg~~d~~~~~~g~~~~~~~~~i~~~~~~~~i~v~~~~~~e~l~~f~~~-~~~~~K 161 (164) T 1wkq_A 89 EPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPFYQVTLTEHLSPFQAW-RNFANK 161 (164) T ss_dssp CCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCEEECCCTTTTHHHHHH-HHCTTC T ss_pred CCH------HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHH-HHHCCC T ss_conf 843------9999999985689899997389864457527878999837977588008258889987999999-885079 Q ss_pred CCH Q ss_conf 222 Q gi|254780348|r 149 RSH 151 (364) Q Consensus 149 rP~ 151 (364) ||| T Consensus 162 ~~Y 164 (164) T 1wkq_A 162 KEY 164 (164) T ss_dssp CCC T ss_pred CCC T ss_conf 979 No 16 >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Probab=99.94 E-value=3e-27 Score=202.76 Aligned_cols=128 Identities=26% Similarity=0.318 Sum_probs=110.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC------------------------------------ Q ss_conf 99999999999987088218889647999869989999843887------------------------------------ Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG------------------------------------ 50 (364) Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~------------------------------------ 50 (364) ++.||+.|...|++. +-|+..||||||+||+|||+||+..+ T Consensus 3 ~~~~M~~A~~~a~rS---~c~~~~VGAVIV~~~~IIs~G~Ng~P~G~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193) T 1vq2_A 3 ASTVLQIAYLVSQES---KCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG 79 (193) T ss_dssp HHHHHHHHHHHHTTC---CCSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC----------------- T ss_pred HHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCC T ss_conf 899999999999758---99999878999989989998748997688764533101211103211122210110000112 Q ss_pred ---------------------CCCHHHHHHHHHHC---CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf ---------------------69848999999730---010698899905732115752105556530134324663010 Q gi|254780348|r 51 ---------------------GCPHAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 (364) Q Consensus 51 ---------------------G~~HAE~~al~~~~---~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~D 106 (364) ...|||++||.++. ....|+|||||+|||.+ |+.+|+++||+||||+..| T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~iHAE~~ai~~~~~~~~~~~~~~lyvt~~PC~~------Ca~~i~~~gI~~V~~~~~~ 153 (193) T 1vq2_A 80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYCETY 153 (193) T ss_dssp ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHH------HHHHHHHHTCCEEEEEECC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCHHH------HHHHHHHHCCCEEEEEECC T ss_conf 1100000002332100136788769899999999883788877436647896599------9999999798989996289 Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC Q ss_conf 121101243311001898896222101232001222201 Q gi|254780348|r 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 (364) Q Consensus 107 Pnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~ 145 (364) |+. .+.|.++|+++||+|..+.++++..||..+|... T Consensus 154 ~~~--~~~~~~~l~~~gI~v~~i~~~~~~~l~~~~~~~~ 190 (193) T 1vq2_A 154 DKN--KPGWDDILRNAGIEVFNVPKKNLNKLNWENINEF 190 (193) T ss_dssp TTC--CTTTTHHHHHTTCEEEECCGGGCCSSCGGGCCCB T ss_pred CCC--CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH T ss_conf 995--3799999998799799519999999999999998 No 17 >3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Pediococcus pentosaceus atcc 25745} Probab=99.94 E-value=6e-27 Score=200.73 Aligned_cols=168 Identities=18% Similarity=0.148 Sum_probs=133.6 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCC----CHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC Q ss_conf 011010278772021136532222----1013566676420144036631220134542354434444344215764466 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPIT----GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT----~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~ 227 (364) |++++|+|+|||||..+|++.|++ +++++.++|.+|+.+||||+|.+|+..|+|.|+.|..... .. ..+|++++ T Consensus 6 vi~~~a~SlDG~Ia~~~g~~~w~~~~~~~~~~~~~~~~~~~~~dail~Gr~T~~~~~~~~~~~~~~~~-~~-~~~v~~~~ 83 (178) T 3jtw_A 6 VILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYA-DR-QTYIVTSH 83 (178) T ss_dssp EEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTTT-TS-EEEEECSS T ss_pred EEEEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCCCC-CC-CEEEEEEC T ss_conf 98999991898678999995772478887799999999984399899894363301535894433458-98-47999632 Q ss_pred CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC Q ss_conf 89980221003444670798546554210110022322222333222788999986079969998123899999997889 Q gi|254780348|r 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 (364) Q Consensus 228 l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~L 307 (364) ..- . ..++. .-..++.++++.|.+++.++++||||+.++++||+++| T Consensus 84 ~~~------------------------~------~~~~~---~~~~~~~~~~~~l~~~~~~~i~v~GG~~l~~~fl~~~L 130 (178) T 3jtw_A 84 LGE------------------------D------TDKIK---YWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANL 130 (178) T ss_dssp CCC------------------------C------CSSEE---EECSCHHHHHHHHHTSSCCEEEEEECHHHHHHHHHTTC T ss_pred CCC------------------------C------CCCCE---ECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCC T ss_conf 443------------------------2------34530---02799999999999747995699864999999987798 Q ss_pred CCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEE Q ss_conf 8899999607432688752333454544464054468867936999950 Q gi|254780348|r 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 (364) Q Consensus 308 vDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~ 356 (364) |||+++|++|.++|+ |.+.+ .......+|++++++.++++++++|.| T Consensus 131 vDel~l~~~P~ilG~-G~~lf-~~~~~~~~l~L~~~~~~~~~v~l~Y~R 177 (178) T 3jtw_A 131 IDTYILTTVPIFLGS-GIRLF-DRLEEQVPVRLIDVYQKNELVYSIYQR 177 (178) T ss_dssp CSEEEEEEESCCCCS-SEESS-SCCCSCCCEEEEEEEEETTEEEEEEEE T ss_pred CCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEEECCEEEEEEEC T ss_conf 777576991088668-86077-887667784897899969999999827 No 18 >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Probab=99.94 E-value=8.9e-27 Score=199.55 Aligned_cols=136 Identities=21% Similarity=0.402 Sum_probs=111.3 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCC-----------------------CCHHHHHH Q ss_conf 7789999999999998708821888964799986-99899998438876-----------------------98489999 Q gi|254780348|r 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGG-----------------------CPHAEVQA 59 (364) Q Consensus 4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G-----------------------~~HAE~~a 59 (364) -+-|+.||+.|+.+|++. +.||+.||||||+ +|+|++.||+...+ ..|||++| T Consensus 10 ~~wde~fM~~A~~~A~~S---~~~~~~VGAVIV~~~~~ii~~g~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~na 86 (178) T 2w4l_A 10 LEWPEYFMAVAFLSAQRS---KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNA 86 (178) T ss_dssp CCHHHHHHHHHHHHHTTC---CCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHH T ss_pred CCHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 789999999999999736---99999858999979938986114677898874433100111265422333312469999 Q ss_pred HHHH-CCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCEEEECCCCHHHHH Q ss_conf 9973-00106988999057321157521055565301343246630101211-012433110018988962221012320 Q gi|254780348|r 60 LEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQWLSQKGIIVDRMMESEGKIF 137 (364) Q Consensus 60 l~~~-~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~-v~gkGi~~L~~~GI~V~~~~~~~~~~l 137 (364) |..+ +....|+|||||+|||++ |+.+|+++||+|||++..||++. ..+.|.++|+++||+|+.+ +.++.++ T Consensus 87 i~~~~~~~~~~~tlYvT~ePC~~------Ca~~I~~~GIk~Vvy~~~~~~~~~~~~~~~~~l~~aGI~v~~~-~~~~~~i 159 (178) T 2w4l_A 87 IMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKF-IPKCSKI 159 (178) T ss_dssp HHC----CCTTCEEEEEECCCHH------HHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEEEC-CCSCSEE T ss_pred HHHHCCCCCCCCEEEECCCCHHH------HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEC-CHHHHHH T ss_conf 99847788779868871898799------9999999498989996467898077799999999889999985-7448789 Q ss_pred HHHHHHHCCCCCCH Q ss_conf 01222201134222 Q gi|254780348|r 138 LHAYLTRQVEKRSH 151 (364) Q Consensus 138 n~~f~~~~~~~rP~ 151 (364) ...| ...+++|- T Consensus 160 ~~~f--~~~~~~p~ 171 (178) T 2w4l_A 160 VIDF--DSINSRPS 171 (178) T ss_dssp EEEG--GGC----- T ss_pred HHHH--HHHCCCCC T ss_conf 9889--98658987 No 19 >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Probab=99.94 E-value=9.8e-27 Score=199.27 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=99.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC-CCCC------------------HHHHHHHHHHC- Q ss_conf 789999999999998708821888964799986998999984388-7698------------------48999999730- Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------------------HAEVQALEEAG- 64 (364) Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~-~G~~------------------HAE~~al~~~~- 64 (364) +.|+.||+.|+.+|++. +.||+.||||||++|+||++||... .|.+ |||++||.+|. T Consensus 40 swDeyfM~lA~~~A~rS---~~p~~~VGAVIV~~~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~iHAE~nAi~~a~~ 116 (184) T 2hvw_A 40 SWQDYFMANAELISKRS---TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAK 116 (184) T ss_dssp CHHHHHHHHHHHHGGGC---CCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999999999746---999998889999899699986378888788733215510012245534789988999976 Q ss_pred --CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCC Q ss_conf --01069889990573211575210555653013432466301012110124331100189889622210 Q gi|254780348|r 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 (364) Q Consensus 65 --~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~~~ 132 (364) ..++|+|||||+|||.+ |+.+|+++||+|||++..+++ .+.|+++|+++||+|...-.+ T Consensus 117 ~~~~~~gatLYvT~ePC~~------Ca~~Ii~aGIkrVVy~~~y~~---~~~~~~~l~~~gIev~~~~~~ 177 (184) T 2hvw_A 117 EGISANNTEIYVTHFPCIN------CTKALLQAGVKKITYNTAYRI---HPFAIELMTQKEVEYVQHDVP 177 (184) T ss_dssp HTCCCTTEEEEEEECCCHH------HHHHHHHHTEEEEEEEECCSC---CHHHHHHHHHHTCEEEECCCC T ss_pred HHCCCCCCEEEECCCCHHH------HHHHHHHCCCCEEEECCCCCC---CHHHHHHHHHCCCEEEECCCC T ss_conf 3303466227987898599------999999819898997706689---809999999879989977831 No 20 >3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica} Probab=99.94 E-value=1.3e-25 Score=191.61 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=129.6 Q ss_pred HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHH----HHHHCCCCEEEEHHHHCCCCCCCCCCCCCC Q ss_conf 1222201134222011010278772021136532222101356667----642014403663122013454235443444 Q gi|254780348|r 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPELTCRLNGL 214 (364) Q Consensus 139 ~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh----~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~ 214 (364) +.||+.-..+ | +.+|+|+|||||.++|+++|||++.++..+| .+|+++||||+|.+|+..+.+.. ... T Consensus 13 ~~~~~~~M~~---I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~dailvGr~Ty~~~~~~~----~~~ 84 (197) T 3ky8_A 13 ENLYFQGMAN---I-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLSFD----CDW 84 (197) T ss_dssp CCTTTTTCEE---E-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHHHHCCTT----CCC T ss_pred HHHHHHCCCC---E-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCEECCCCCC----CCC T ss_conf 5656605700---0-3999948782189899836847988878999999999854899997814110335557----556 Q ss_pred CCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC Q ss_conf 43442157644668998022100344467079854655421011002232222233322278899998607996999812 Q gi|254780348|r 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 (364) Q Consensus 215 ~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEG 294 (364) . ..|.++|+++...-.. .. ....+ . .-..++.++++.|.+.|.+.+++|| T Consensus 85 ~-~~~~~~V~s~~~~~~~-----~~-~~~~v--------------------~---~~~~d~~~~l~~l~~~g~~~i~igG 134 (197) T 3ky8_A 85 P-YSKPVFVLSNTMTEVP-----QG-YEDKV--------------------F---LVKGKLVDIIADLNAKGFNELYIDG 134 (197) T ss_dssp C-CSSCEEEECSSCCSCC-----TT-CTTTE--------------------E---EECSCHHHHHHHHHHTTCCEEEEES T ss_pred C-CCCCEEEECCCCCCCC-----CC-CCCCE--------------------E---EECCCHHHHHHHHHHCCCCEEEECC T ss_conf 6-7887899706666455-----46-89989--------------------9---9829979999999967996699816 Q ss_pred HHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-EEEEEEECC Q ss_conf 3899999997889889999960743268875233345454446405446886793-699995074 Q gi|254780348|r 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKN 358 (364) Q Consensus 295 G~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-v~~~y~~k~ 358 (364) |+. +++||++|||||+++|++|+++|+ |.+.+ .......+|++++++.++++ +.++|.+|. T Consensus 135 g~~-~~~~l~~gLvDEl~l~i~P~llG~-G~~lF-~~~~~~~~L~L~~~~~~~~g~v~l~Y~~kr 196 (197) T 3ky8_A 135 GVT-IQNFLKEDLIDEMVITRFPILLGG-GVPLF-GELESSLSFNVIKSEVVLDSLTQTTYHRKR 196 (197) T ss_dssp HHH-HHHHHHTTCCCEEEEEEESEECSS-SEESC-CCCSSCEEEEEEEEEEETTTEEEEEEEECC T ss_pred CCC-CHHHHHCCCCCEEEEEEEEEEECC-CCCCC-CCCCCCCCCEEEEEEECCCCEEEEEEEEEE T ss_conf 761-100120688755799992379758-85166-777767677896889928986999999950 No 21 >2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2 Probab=99.93 E-value=1.7e-25 Score=190.92 Aligned_cols=133 Identities=23% Similarity=0.325 Sum_probs=109.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE--CCEEEEEEECCCC----CCCHHHHHHHHHHCCH----------H Q ss_conf 7789999999999998708821888964799986--9989999843887----6984899999973001----------0 Q gi|254780348|r 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYG----GCPHAEVQALEEAGEE----------A 67 (364) Q Consensus 4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~--~g~ii~~g~~~~~----G~~HAE~~al~~~~~~----------~ 67 (364) .+.|+.||++||++|+++... .+.+||||||+ +|+||++|+.+.. ...|||++||++|.++ . T Consensus 25 ~~~~e~~M~~aielAr~~~~~--g~~P~GavIv~~d~g~Iia~g~N~~~~~~dpt~HAEi~Ai~~a~~~~~~~~l~~~~~ 102 (197) T 2g84_A 25 LAAPEARMGYVLELVRANIAA--DGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGL 102 (197) T ss_dssp CCSHHHHHHHHHHHHHHHHHT--TCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTS T ss_pred CCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 788599999999999999876--999789999988999899987177778899663799999999999847654466455 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCC--------CCCCCCCCCCEEE-ECCCCHHHHHH Q ss_conf 69889990573211575210555653013432466301012110124--------3311001898896-22210123200 Q gi|254780348|r 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--------GLQWLSQKGIIVD-RMMESEGKIFL 138 (364) Q Consensus 68 ~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gk--------Gi~~L~~~GI~V~-~~~~~~~~~ln 138 (364) .++|||+||||| |.|+.+|+++||+|||||..||+....|. ....+.+.+|+|. +++++||..+. T Consensus 103 ~~~tlYtT~EPC------~MC~~Ai~~agI~rVvyg~~~~d~~~~G~~~~~~~~~~~~~~~~~~i~v~ggvl~dE~~~Ll 176 (197) T 2g84_A 103 PACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALL 176 (197) T ss_dssp CCEEEEEEECCC------HHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHH T ss_pred CCCEEEEECCCC------HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHHHHHHHH T ss_conf 585799634778------88999999862798999960898654576532027777668765999898688899999999 Q ss_pred HHHHHH Q ss_conf 122220 Q gi|254780348|r 139 HAYLTR 144 (364) Q Consensus 139 ~~f~~~ 144 (364) +.|+.. T Consensus 177 k~f~~~ 182 (197) T 2g84_A 177 REYNAC 182 (197) T ss_dssp HHHHHH T ss_pred HHHHHC T ss_conf 999976 No 22 >1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A* Probab=99.78 E-value=5.9e-18 Score=140.01 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=116.1 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442157644668998 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~ 231 (364) |++-+|+|+||+||..++ .| +.++.+++.+.+++..|+|++|.+|...-. + + +.. -..+|++++.... T Consensus 3 ii~~~a~s~dG~Ia~~~~--~W-~~~ed~~~f~~~~~~~~~vimGr~T~e~~~-----~-p-l~~--r~~iVls~~~~~~ 70 (168) T 1cz3_A 3 VIFVLAMDVSGKIASSVE--SW-SSFEDRKNFRKITTEIGNVVMGRITFEEIG-----R-P-LPE--RLNVVLTRRPKTS 70 (168) T ss_dssp EEEEEEECTTCEEECSCT--TC-SCHHHHHHHHHHHHHHTEEEEEHHHHHHHC-----S-C-CTT--SEEEEECSSCCCC T ss_pred EEEEEEECCCCCEECCCC--CC-CCHHHHHHHHHHHCCCCEEEECCCHHHHCC-----C-C-CCC--CEEEEEEECCCCC T ss_conf 999999848984789798--98-998999999999708998999741766275-----4-3-679--7499997533113 Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE Q ss_conf 02210034446707985465542101100223222223332227889999860799699981238999999978898899 Q gi|254780348|r 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 (364) Q Consensus 232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl 311 (364) . ...++ .-..++.++++.|.+.+.++|+|+||+.+.++||+++|+||+ T Consensus 71 ~---------~~~~~-----------------------~~~~~~~~~i~~l~~~~~~~i~v~GG~~i~~~~l~~~lvDel 118 (168) T 1cz3_A 71 N---------NPSLV-----------------------FFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDEL 118 (168) T ss_dssp S---------CTTEE-----------------------EECSCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCSEE T ss_pred C---------CCCEE-----------------------EECCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEE T ss_conf 3---------68779-----------------------971889999998875699858999239999998658656788 Q ss_pred EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC--EEEEEEECC Q ss_conf 99960743268875233345454446405446886793--699995074 Q gi|254780348|r 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGKN 358 (364) Q Consensus 312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D--v~~~y~~k~ 358 (364) ++++.|.++|+ |.+.+ ........+++.+.+.++++ +.++|..+. T Consensus 119 ~lt~ip~~~g~-G~~~f-~~~~~~~~l~l~~~~~~~~~g~v~l~Y~v~k 165 (168) T 1cz3_A 119 FVTVEPYVFGK-GIPFF-DEFEGYFPLKLLEMRRLNERGTLFLKYSVEK 165 (168) T ss_dssp EEEECSEEESS-CEESS-CCCSCEEEEEEEEEEECSSSCCEEEEEEEC- T ss_pred EEEEEEEECCC-CCCCC-CCCCCCCCEEEEEEEEECCCCEEEEEEEEEE T ss_conf 99997175588-88778-9888776249978899589988999999983 No 23 >1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A Probab=98.55 E-value=1e-06 Score=64.24 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=101.3 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442157644668998 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~ 231 (364) +++=+|++.||-|+ .+|+--|..-++..++...+ ....++++|.+|... |--.+ +++ ..+|++++..- T Consensus 3 i~~I~A~~~~~~IG-~~~~lPW~~~~~Dl~~F~~~-T~~~~vIMGrkT~es----l~~pl---p~R--~~iVlsr~~~~- 70 (162) T 1vdr_A 3 LVSVAALAENRVIG-RDGELPWPSIPADKKQYRSR-IADDPVVLGRTTFES----MRDDL---PGS--AQIVMSRSERS- 70 (162) T ss_dssp EEEEEEEEETSEEE-BTTBCSSCCCHHHHHHHHHH-TSSSCEEEEHHHHHH----TTTSC---CSS--SEEEECSSCCC- T ss_pred EEEEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHH-CCCCEEEEECCCHHH----HHHCC---CCC--CEEEEEECCCC- T ss_conf 99999998999576-79968773588899999985-589779998770254----31125---687--32999712121- Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE Q ss_conf 02210034446707985465542101100223222223332227889999860799699981238999999978898899 Q gi|254780348|r 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 (364) Q Consensus 232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl 311 (364) ....++.+ ..++.++++.+.+.+.+.|+|-||+++...|+. ++||+ T Consensus 71 ----------------------------~~~~~~~~----~~~~~~ai~~~~~~~~~~I~ViGG~~Iy~~~l~--~~dei 116 (162) T 1vdr_A 71 ----------------------------FSVDTAHR----AASVEEAVDIAASLDAETAYVIGGAAIYALFQP--HLDRM 116 (162) T ss_dssp ----------------------------CCSSSCCE----ESSHHHHHHHHHHTTCSCEEEEECHHHHHHHGG--GCSEE T ss_pred ----------------------------CCCCCEEE----EEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHH--HCCEE T ss_conf ----------------------------02697699----612999999986289966999877899999987--43857 Q ss_pred EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC Q ss_conf 99960743268875233345454446405446886793699995074 Q gi|254780348|r 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 (364) Q Consensus 312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~Dv~~~y~~k~ 358 (364) ++++-+....++. -.| . .....|++++.....+=.+.+|.|+. T Consensus 117 ~iT~I~~~~~~D~-~fP--~-~d~~~~~~~~~~~~~~f~~~~y~Rk~ 159 (162) T 1vdr_A 117 VLSRVPGEYEGDT-YYP--E-WDAAEWELDAETDHEGFTLQEWVRSA 159 (162) T ss_dssp EEEEEEEECCCSE-ECC--C-CCTTTEEEEEEEECSSCEEEEEEEC- T ss_pred EEEEECCCCCCCE-ECC--C-CCHHHCEEEEEEECCCEEEEEEEECC T ss_conf 9999756646767-888--8-98689899999616997999999369 No 24 >3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* Probab=98.39 E-value=9.9e-06 Score=57.52 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=97.7 Q ss_pred HHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCCCC Q ss_conf 101027877202113653222210135666764201440366312201345423544344443442--157644668998 Q gi|254780348|r 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFKLS 231 (364) Q Consensus 154 lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~i~ 231 (364) |=+|++.||-|+. +|+--| ..++.+++-.++ ....+|++|.+|... | ++ ...| .-||++++... T Consensus 3 lI~A~~~ng~IG~-~~~lPW-~~~~D~~~F~~~-T~~~~vIMGrkT~es----~----p~--~pL~~R~niVls~~~~~- 68 (162) T 3dfr_A 3 FLWAQNRNGLIGK-DGHLPW-HLPDDLHYFRAQ-TVGKIMVVGRRTYES----F----PK--RPLPERTNVVLTHQEDY- 68 (162) T ss_dssp EEEEECTTCEEEB-TTBCSS-CCHHHHHHHHHT-TTTSEEEEEHHHHHH----S----SS--SSCTTSEEEEECSCTTC- T ss_pred EEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCHHHH----C----CC--CCCCCCEEEEECCCCCC- T ss_conf 8999889994437-996687-798999999997-089859996252443----5----77--67799718998477542- Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE Q ss_conf 02210034446707985465542101100223222223332227889999860799699981238999999978898899 Q gi|254780348|r 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 (364) Q Consensus 232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl 311 (364) ...++.++ .++.+++..+.+...+.|+|-||+++...|+. ++||+ T Consensus 69 -----------------------------~~~~~~~~----~s~~~~~~~~~~~~~~~i~IiGG~~IY~~~l~--~~d~i 113 (162) T 3dfr_A 69 -----------------------------QAQGAVVV----HDVAAVFAYAKQHLDQELVIAGGAQIFTAFKD--DVDTL 113 (162) T ss_dssp -----------------------------CCTTSEEE----SSHHHHHHHHHHCCSSCEEECCCHHHHHHTGG--GCCEE T ss_pred -----------------------------CCCCEEEE----CCHHHHHHHHHHCCCCCEEEECHHHHHHHHHH--HCCEE T ss_conf -----------------------------34886993----89999998765236665899687999999886--57999 Q ss_pred EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC------EEEEEEECC Q ss_conf 99960743268875233345454446405446886793------699995074 Q gi|254780348|r 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD------VCLEYIGKN 358 (364) Q Consensus 312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D------v~~~y~~k~ 358 (364) +++.-+....++. ..| ......|.+++...+.+. .+.+|.||. T Consensus 114 ~lT~I~~~~~~D~-~fp---~~~~~~~~~i~~~~~~~~~~~~~y~F~iy~RK~ 162 (162) T 3dfr_A 114 LVTRLAGSFEGDT-KMI---PLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA 162 (162) T ss_dssp EEEEESSCCCCSE-ECC---CCCGGGEEEEEEEEECCSSGGGCEEEEEEEECC T ss_pred EEEEECCCCCCCE-EEC---CCCHHHCEEEEEEEECCCCCCCCEEEEEEEEEC T ss_conf 9987567647876-806---788589699998852256799747999999719 No 25 >3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Probab=98.33 E-value=1.2e-05 Score=57.03 Aligned_cols=159 Identities=16% Similarity=0.083 Sum_probs=95.1 Q ss_pred HHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 20110102787720211365322221013566676420------------144036631220134542354434444344 Q gi|254780348|r 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------------QSDAILVGIGTVLADDPELTCRLNGLQEHS 218 (364) Q Consensus 151 ~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~ 218 (364) -+.+=.|++.||-|+ .+|+--|-.-++..++..++-. .-++|++|.+|... ++....+- T Consensus 14 ~i~lIvA~~~n~~IG-~~~~LPW~~lp~Dl~~Fk~~T~~~~~~~~~~~~~~~n~VIMGRkT~eS--------ip~~~~PL 84 (515) T 3nrr_A 14 DLTIFVAVALNKVIG-HKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYES--------IPKASLPL 84 (515) T ss_dssp CEEEEEEECTTSEEE-BTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHT--------SCGGGCSC T ss_pred CEEEEEEECCCCEEC-CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHH--------CCCCCCCC T ss_conf 689999988999276-799688865999999999973689764433435679589980674766--------89777889 Q ss_pred CEE--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEECCH Q ss_conf 215--76446689980221003444670798546554210110022322222333222788999986-079969998123 Q gi|254780348|r 219 PMR--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGG 295 (364) Q Consensus 219 P~r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~-~~gi~~iLVEGG 295 (364) |-| ||++++..- ..++.+. .++.++++.+. +.+...|+|-|| T Consensus 85 p~R~nIVlSr~~~~-------------------------------~~~~~~~----~sl~~al~~~~~~~~~~~i~IiGG 129 (515) T 3nrr_A 85 KNRINVILSRTVKE-------------------------------VPGCLVY----EDLSTAIRDLRANVPHNKIFILGG 129 (515) T ss_dssp TTEEEEEECSSCCC-------------------------------CTTEEEE----SSHHHHHHHHHHHSCCSCEEECCC T ss_pred CCCEEEEECCCCCC-------------------------------CCCCEEE----CCHHHHHHHHHHCCCCCCEEEECC T ss_conf 77959998998976-------------------------------8996898----999999999984168785899651 Q ss_pred HHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEE--ECCC---EEEEEEECC Q ss_conf 89999999788988999996074326887523334545444640544688--6793---699995074 Q gi|254780348|r 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSD---VCLEYIGKN 358 (364) Q Consensus 296 ~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~--ig~D---v~~~y~~k~ 358 (364) +++...||...++|+++++.-..-..++. -+| .. ...|.+.+... -.++ -+.+|.|++ T Consensus 130 ~~IY~~~l~~~~~d~i~lT~I~~~~~gD~-~FP--~i--~~~~~~~~~~~~~~~~~~~y~F~~y~Rk~ 192 (515) T 3nrr_A 130 SFLYKEVLDNGLCDKIYLTRLNKEYPGDT-YFP--DI--PDTFEITAISPTFSTDFVSYDFVIYERKD 192 (515) T ss_dssp HHHHHHHHHTTCEEEEEEEEESSCCCCSE-ECC--CC--CTTEEEEEECCCEECSSCEEEEEEEEECC T ss_pred HHHHHHHCCCCCCCEEEEEEEEEEECCCC-CCC--CC--CCCCEEEEEECCCCCCCCCEEEEEEEEEC T ss_conf 99999861634589899988805754773-178--88--74116999842546799965999999856 No 26 >1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A* Probab=98.32 E-value=3.2e-05 Score=54.08 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=60.6 Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCCE Q ss_conf 22788999986079969998123899999997889889999960743268875233345454446405446886--7936 Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSDV 350 (364) Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~Dv 350 (364) .+++++++.+.+.+...|+|-||+.+..+||+..++|+++++.-..-+-++. ++.. .....|++++...+ .+++ T Consensus 144 ~Sleeal~~l~~~~~~~IfVIGG~~IY~~~L~~~lid~IyLT~I~~~~egDt---fFP~-id~~~fklvs~~~~~~en~~ 219 (280) T 1j3k_A 144 NKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDV---FFPE-INENEYQIISVSDVYTSNNT 219 (280) T ss_dssp SSHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEECCSE---ECCC-CCTTTEEEEEECCCEEETTE T ss_pred CCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEEEEECCEECCCE---ECCC-CCHHHCEEEEEECCCCCCCC T ss_conf 6899999998641466379976899999985143279899999897126776---6797-88588989985231337897 Q ss_pred ---EEEEEECC Q ss_conf ---99995074 Q gi|254780348|r 351 ---CLEYIGKN 358 (364) Q Consensus 351 ---~~~y~~k~ 358 (364) +.+|.|++ T Consensus 220 ~Y~F~iY~R~n 230 (280) T 1j3k_A 220 TLDFIIYKKTN 230 (280) T ss_dssp EEEEEEEEECC T ss_pred CEEEEEEECCC T ss_conf 05899998268 No 27 >1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3fs6_A* 1mvs_A* ... Probab=98.25 E-value=1.1e-05 Score=57.15 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=81.7 Q ss_pred HHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEEC Q ss_conf 10102787720211365322221013566676420------144036631220134542354434444344215--7644 Q gi|254780348|r 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILD 225 (364) Q Consensus 154 lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld 225 (364) +=+|++.||-|.. +|+--|...++..++...+-. ..++|++|.+|... ++.....-|-| ||++ T Consensus 6 ~I~A~~~n~~IG~-~g~lPW~~~~~Dl~~Fk~~T~~~~~~~~~~~vIMGrkT~es--------~p~~~rpLp~R~niVlS 76 (186) T 1kmv_A 6 CIVAVSQNMGIGK-NGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS--------IPEKNRPLKGRINLVLS 76 (186) T ss_dssp EEEEECTTCEEEB-TTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTTSEEEEEC T ss_pred EEEEECCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH--------CCCCCCCCCCCEEEEEE T ss_conf 9999889996737-99187988989999999986799877774189994673431--------76567626996699983 Q ss_pred CCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH----CCCCEEEECCHHHHHHH Q ss_conf 66899802210034446707985465542101100223222223332227889999860----79969998123899999 Q gi|254780348|r 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAVAHS 301 (364) Q Consensus 226 ~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~----~gi~~iLVEGG~~l~~s 301 (364) ++...+.+. ...+ ..+++++++.+.. .....|+|-||+.+..+ T Consensus 77 r~~~~~~~~------------------------------~~~v---~~s~~~~~~~~~~~~~~~~~~~ifIIGG~~IY~~ 123 (186) T 1kmv_A 77 RELKEPPQG------------------------------AHFL---SRSLDDALKLTEQPELANKVDMVWIVGGSSVYKE 123 (186) T ss_dssp SSCSSCCTT------------------------------CSEE---ESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHH T ss_pred CCCCCCCCC------------------------------CEEE---CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH T ss_conf 254445687------------------------------6686---1889999998654765067766999750999999 Q ss_pred HHHCCCCCEEEEEEECEEECCC Q ss_conf 9978898899999607432688 Q gi|254780348|r 302 FINSRLVDSIILYRSQIVIGEG 323 (364) Q Consensus 302 fl~~~LvDEl~ifiaP~ilG~~ 323 (364) ||+..++||+|++.-..-..++ T Consensus 124 ~l~~~~~d~i~lT~I~~~~~~D 145 (186) T 1kmv_A 124 AMNHPGHLKLFVTRIMQDFESD 145 (186) T ss_dssp HHTSCSCEEEEEEEESSCCCCS T ss_pred HHHCCCCCEEEEEEECCCCCCC T ss_conf 9737554479999972244788 No 28 >2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 4cd2_A* 1vj3_A* Probab=98.22 E-value=4.5e-06 Score=59.81 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=81.2 Q ss_pred CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH---------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 42220110102787720211365322221013566676420---------144036631220134542354434444344 Q gi|254780348|r 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA---------QSDAILVGIGTVLADDPELTCRLNGLQEHS 218 (364) Q Consensus 148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa---------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~ 218 (364) +.+-+.+=.|++.+|-|+. +|+--| .-++..++..++-. .-++|++|.+|... ++.....- T Consensus 3 ~~~~i~lI~A~~~n~~IG~-~~~LPW-~l~~Dl~~Fk~~T~~~~~~~~~~~~n~VIMGRkT~eS--------ip~~~rPL 72 (206) T 2fzi_A 3 QQKSLTLIVALTTSYGIGR-SNSLPW-KLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWES--------IPLQFRPL 72 (206) T ss_dssp SSSCEEEEEEEETTCEEES-SSSCSS-CCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHH--------SCGGGCSC T ss_pred CCCEEEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECC--------CCCCCCCC T ss_conf 8871899999889996627-992478-7989999999974789765654557589994072436--------77666788 Q ss_pred CEE--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-------CCCCE Q ss_conf 215--764466899802210034446707985465542101100223222223332227889999860-------79969 Q gi|254780348|r 219 PMR--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-------RGVTS 289 (364) Q Consensus 219 P~r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~-------~gi~~ 289 (364) |-| ||++++..... ..++.+ ..++.+.++.+.+ .++.. T Consensus 73 p~R~niVlSr~~~~~~-----------------------------~~~~~~----~~s~~~al~~~~~~~~~~~~~~~~~ 119 (206) T 2fzi_A 73 KGRINVVITRNESLDL-----------------------------GNGIHS----AKSLDHALELLYRTYGSESSVQINR 119 (206) T ss_dssp TTEEEEEECSCCSSCC-----------------------------CSSCEE----ESSHHHHHHHHHHHSCTTSSSEEEE T ss_pred CCCEEEEEECCCCCCC-----------------------------CCCEEE----ECCHHHHHHHHHHHHHHHHCCCCCE T ss_conf 9974899926887556-----------------------------899699----6789999999998665653046764 Q ss_pred EEECCHHHHHHHHHHCCCCCEEEEEEECEEECCC Q ss_conf 9981238999999978898899999607432688 Q gi|254780348|r 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 (364) Q Consensus 290 iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~ 323 (364) |+|-||+++..+||+..++|+++++.-..-+.++ T Consensus 120 I~IiGG~~IY~~~l~~~~~d~i~lT~I~~~~~~D 153 (206) T 2fzi_A 120 IFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCD 153 (206) T ss_dssp EEEEECHHHHHHHHHCTTEEEEEEEEEESCCCCS T ss_pred EEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCC T ss_conf 9994639999998577010889999967632688 No 29 >3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} Probab=98.19 E-value=4.8e-05 Score=52.91 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=97.1 Q ss_pred HHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 20110102787720211365322221013566676420144036631220134542354434444344215764466899 Q gi|254780348|r 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230 (364) Q Consensus 151 ~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i 230 (364) -|++=+|++.+|-|+. +|+--| ..++..++...+ ..-.++++|.+|... |-.+ .-..-..||++++... T Consensus 24 ~i~~I~A~~~n~~IG~-~~~lPW-~~~eDl~~Fk~~-T~~~~vIMGrkT~eS----lp~~----pl~~R~niVlsr~~~~ 92 (190) T 3ix9_A 24 KIVAIWAQDEEGVIGK-DNRLPW-YLPAELQHFKET-TLNHAILMGRVTFDG----MGRR----LLPKRETLILTRNPEE 92 (190) T ss_dssp CEEEEEEECTTCEEEB-TTBCSC-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----TTTC----CCTTCEEEEECCSCCS T ss_pred EEEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCHHH----HCCC----CCCCCEEEEEECCCCC T ss_conf 0689999989997737-997477-688999999997-289709997661265----4102----4489649999656433 Q ss_pred CHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCE Q ss_conf 80221003444670798546554210110022322222333222788999986079969998123899999997889889 Q gi|254780348|r 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 (364) Q Consensus 231 ~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDE 310 (364) . ..++.+ ..+++++++... .....|+|=||+++..+|+. ++|| T Consensus 93 ~------------------------------~~~~~~----~~sl~~al~~~~-~~~~~i~VIGG~~IY~~~l~--~~d~ 135 (190) T 3ix9_A 93 K------------------------------IDGVAT----FHDVQSVLDWYS-AQEKNLYIVGGKQIFQAFEP--YLDE 135 (190) T ss_dssp C------------------------------CSSSEE----ESSHHHHHHHHH-TSCSCEEEEECHHHHHHHGG--GCSE T ss_pred C------------------------------CCCCEE----CCCHHHHHHHHH-HCCCEEEEECCHHHHHHHHH--HCCE T ss_conf 5------------------------------576340----274999998886-25743999656899999998--7999 Q ss_pred EEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-------EEEEEEECCC Q ss_conf 999960743268875233345454446405446886793-------6999950743 Q gi|254780348|r 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-------VCLEYIGKNL 359 (364) Q Consensus 311 l~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-------v~~~y~~k~~ 359 (364) ++++.-+...-++ .++........|++++.+....| .+..|.||+. T Consensus 136 i~lT~I~~~~egD---~~FP~~~d~~~f~~i~~~~~~~de~~~y~f~~~~~~RK~~ 188 (190) T 3ix9_A 136 VIVTHIHARVEGD---TYFPAEFDLSLFETVSSKFYTKDEKNPYDFTIQYRKRKEV 188 (190) T ss_dssp EEEEEESSCCCCS---EECCCCCCGGGEEEEEEEEECCBTTBCSCEEEEEEEECCC T ss_pred EEEEEECCEECCC---EECCCCCCHHHCEEEEEEECCCCCCCCCCEEEEEEEEEEC T ss_conf 9999978543787---7827844853689999996036889885389999995213 No 30 >2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* Probab=97.97 E-value=0.00021 Score=48.60 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=55.4 Q ss_pred CHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCCE- Q ss_conf 2788999986079969998123899999997889889999960743268875233345454446405446886--7936- Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSDV- 350 (364) Q Consensus 274 dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~Dv- 350 (364) ++++++..+.+.+...|+|-||+++...||..+++|++|++.-..-+-++. -+| . .....|+..+...+ .++. T Consensus 154 sleeal~~~~~~~~~~IfIIGG~~IY~~~L~~~~~d~iylT~I~~~~egDt-fFP--~-id~~~w~~~~~~~~~~e~~~~ 229 (238) T 2bl9_A 154 SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDV-FFP--E-FDESEFRVTSVSEVYNSKGTT 229 (238) T ss_dssp CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECCSE-ECC--C-CCGGGEEEEEECCCEEETTEE T ss_pred CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCE-ECC--C-CCHHHCEEEEEEEEECCCCCE T ss_conf 788843566507766499974799999886630178899998457657776-889--8-885998999877315489980 Q ss_pred --EEEEEE Q ss_conf --999950 Q gi|254780348|r 351 --CLEYIG 356 (364) Q Consensus 351 --~~~y~~ 356 (364) +.+|.| T Consensus 230 y~F~vY~R 237 (238) T 2bl9_A 230 LDFLVYSK 237 (238) T ss_dssp EEEEEEEE T ss_pred EEEEEEEE T ss_conf 79999997 No 31 >3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum} Probab=97.94 E-value=0.0005 Score=46.01 Aligned_cols=82 Identities=16% Similarity=0.239 Sum_probs=58.5 Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEE--CCC- Q ss_conf 22788999986079969998123899999997889889999960743268875233345454446405446886--793- Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF--GSD- 349 (364) Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~i--g~D- 349 (364) .++++++..+.+..+..|+|=||+++...||+..++|++|++.-..-+-.+. ++.. .....|++.+.... .++ T Consensus 144 ~sl~~al~~~~~~~~~~IfIIGG~~IY~~~L~~p~~~~iylT~I~~~~ecDt---fFP~-id~~~f~~~~~s~~~~en~~ 219 (608) T 3jsu_A 144 NKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDV---FFPE-INENEYQIISVSDVYTSNNT 219 (608) T ss_dssp SSHHHHHHHHHHSCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECCSE---ECCC-CCTTTEEEEEEEEEEECSSC T ss_pred CCHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCE---ECCC-CCHHHCEEEECCCCCCCCCC T ss_conf 9999999997427997499973499999985175799899998767425733---6797-87599789841252146897 Q ss_pred --EEEEEEECC Q ss_conf --699995074 Q gi|254780348|r 350 --VCLEYIGKN 358 (364) Q Consensus 350 --v~~~y~~k~ 358 (364) -+.+|.|++ T Consensus 220 ~y~F~~Y~r~~ 230 (608) T 3jsu_A 220 TLDFIIYKKTN 230 (608) T ss_dssp EEEEEEEEECC T ss_pred CEEEEEEEECC T ss_conf 44799999746 No 32 >2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* Probab=97.83 E-value=0.00013 Score=50.08 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=79.5 Q ss_pred CCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE--EEEEC Q ss_conf 4222011010278772021136532222101356667642014403663122013454235443444434421--57644 Q gi|254780348|r 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILD 225 (364) Q Consensus 148 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~--riVld 225 (364) -+|-|.+=+|++.||-|+ .+|+--| .-++..++..++ ..-.+|++|.+|...= ++....-|- -+|++ T Consensus 2 ~~~~i~lI~A~~~n~~IG-~~~~lPW-~~~~Dl~~Fk~~-T~g~~vIMGrkT~~s~--------~~~~~pL~~r~niVlt 70 (167) T 2w3w_A 2 TRAEVGLVWAQSTSGVIG-RGGDIPW-SVPEDLTRFKEV-TMGHTVIMGRRTWESL--------PAKVRPLPGRRNVVVS 70 (167) T ss_dssp -CCCCEEEEEEETTSEEE-BTTBCSC-CCHHHHHHHHHH-HTTSEEEEEHHHHHHS--------CGGGSSCTTSEEEEEC T ss_pred CCCEEEEEEEECCCCCEE-CCCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCCCC--------CCCCCCCCCCEEEEEE T ss_conf 987299999999999762-8996166-688999999997-4898099978810005--------7556458998499995 Q ss_pred CCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHC Q ss_conf 66899802210034446707985465542101100223222223332227889999860799699981238999999978 Q gi|254780348|r 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 (364) Q Consensus 226 ~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~ 305 (364) ++.... ..++.+. .+++++++.+.. ...++|=||+++..++|. T Consensus 71 r~~~~~------------------------------~~~~~v~----~s~~~al~~~~~--~~~i~IiGG~~IY~~~l~- 113 (167) T 2w3w_A 71 RRPDFV------------------------------AEGARVA----GSLEAALAYAGS--DPAPWVIGGAQIYLLALP- 113 (167) T ss_dssp SCTTCC------------------------------CTTSEEE----SSHHHHHHHTTT--CSSCEEEECHHHHHHHGG- T ss_pred CCCCCC------------------------------CCCEEEE----CCHHHHHHHHCC--CCEEEEECCHHHHHHHHH- T ss_conf 364203------------------------------6875995----689999987104--766999824999999997- Q ss_pred CCCCEEEEEEECEEEC Q ss_conf 8988999996074326 Q gi|254780348|r 306 RLVDSIILYRSQIVIG 321 (364) Q Consensus 306 ~LvDEl~ifiaP~ilG 321 (364) ++|+++++.-..... T Consensus 114 -~~d~l~iT~I~~~~~ 128 (167) T 2w3w_A 114 -HATRCEVTEIEIDLR 128 (167) T ss_dssp -GCSEEEEEEEECCCC T ss_pred -HCCEEEEEEEECCCC T ss_conf -689999999940136 No 33 >1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} Probab=97.78 E-value=0.00035 Score=47.10 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=92.2 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCC Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442--1576446689 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFK 229 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~ 229 (364) +.+=+|++.||-|+ .+|+--| .-++..++..++ ..-.+|++|.+|... | ....| ..||++++.. T Consensus 2 i~~I~A~~~n~~IG-~~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGRkT~es----i-------~~pL~~R~niVls~~~~ 67 (164) T 1zdr_A 2 ISHIVAMDENRVIG-KDNRLPW-HLPADLAYFKRV-TMGHAIVMGRKTFEA----I-------GRPLPGRDNVVVTGNRS 67 (164) T ss_dssp EEEEEEEETTCEEE-BTTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----H-------CSCCTTSEEEEECSCTT T ss_pred EEEEEEECCCCCCC-CCCCCCC-CCHHHHHHHHHH-CCCCEEEEECCHHHH----H-------HHCCCCCCEEEEECCCC T ss_conf 79999998999782-8996165-588999999986-589789996426576----6-------54177883599860322 Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988 Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364) Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364) .... +..+ ..++..++ .+.+.....++|=||+.+..+|+. ++| T Consensus 68 ~~~~------------------------------~~~~----~~~~~~~~-~~~~~~~~~i~IiGG~~iY~~~l~--~~~ 110 (164) T 1zdr_A 68 FRPE------------------------------GCLV----LHSLEEVK-QWIASRADEVFIIGGAELFRATMP--IVD 110 (164) T ss_dssp CCCT------------------------------TCEE----ECSHHHHH-HHHHTCCSCEEEEECHHHHHHHGG--GCC T ss_pred CCCC------------------------------CCEE----ECCHHHHH-HHHHCCCCCEEEECCHHHHHHHHH--HCC T ss_conf 2356------------------------------5301----13689999-997437873899454899999987--526 Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECC-------CEEEEEEECCC Q ss_conf 999996074326887523334545444640544688679-------36999950743 Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS-------DVCLEYIGKNL 359 (364) Q Consensus 310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~-------Dv~~~y~~k~~ 359 (364) +++++.-+...-++ .-+| . .....|++++...... -.+.+|.||+. T Consensus 111 ~i~lT~I~~~~egD-~~FP--~-~~~~~~~~~~~~~~~~de~n~~~y~f~~y~Rk~~ 163 (164) T 1zdr_A 111 RLYVTKIFASFPGD-TFYP--P-ISDDEWEIVSYTPGGKDEKNPYEHAFIIYERKKA 163 (164) T ss_dssp EEEEEEESSCCCCS-EECC--C-CCTTTEEEEEEEECCCSSSSCSCEEEEEEEEC-- T ss_pred EEEEEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEEEECC T ss_conf 99999976453677-6788--8-9867889999887676788997479999997157 No 34 >3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A* Probab=97.72 E-value=0.0011 Score=43.76 Aligned_cols=151 Identities=14% Similarity=0.220 Sum_probs=91.7 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCC--EEEEECCCCC Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442--1576446689 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFK 229 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P--~riVld~~l~ 229 (364) |.+=+|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|... | ...-| ..||++++.+ T Consensus 3 I~lI~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGrkT~es----l-------~~pL~~R~niVltr~~~ 68 (162) T 3ia4_A 3 VSMIAALANNRVIGL-DNKMPW-HLPAELQLFKRA-TLGKPIVMGRNTFES----I-------GRPLPGRLNIVLSRQTD 68 (162) T ss_dssp EEEEEEECGGGEEEB-TTBCSS-CCHHHHHHHHHH-HTTSCEEEEHHHHHH----H-------CSCCTTSCEEEECCCTT T ss_pred EEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCHH----H-------CCCCCCCEEEEEECCCC T ss_conf 999999979994868-996274-188999999985-699769996761553----3-------22666753799946865 Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988 Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364) Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364) ...+ +..+ ..++.+.+... .....++|=||+++..+|+. ++| T Consensus 69 ~~~~------------------------------~~~~----~~sl~~~~~~~--~~~~~i~VIGG~~iY~~~l~--~~d 110 (162) T 3ia4_A 69 YQPE------------------------------GVTV----VATLEDAVVAA--GDVEELMIIGGATIYNQCLA--AAD 110 (162) T ss_dssp CCCT------------------------------TSEE----ESSHHHHHHHH--TTCSEEEECCCHHHHHHHGG--GCS T ss_pred CCCC------------------------------CEEE----ECCHHHHHHHH--CCCCCEEECCHHHHHHHHHH--HCC T ss_conf 5659------------------------------8089----72789999973--68971799154999999997--699 Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECCC-------EEEEEEECC Q ss_conf 9999960743268875233345454446405446886793-------699995074 Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-------VCLEYIGKN 358 (364) Q Consensus 310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~D-------v~~~y~~k~ 358 (364) +++++.-+....++. -.| . .....|+.++...+..| .+.+|.|.+ T Consensus 111 ~i~iT~I~~~~~~D~-~FP--~-~~~~~~~~v~~~~~~~~e~n~~~y~f~~y~R~k 162 (162) T 3ia4_A 111 RLYLTHIELTTEGDT-WFP--D-YEQYNWQEIEHESYAADDKNPHNYRFSLLERVK 162 (162) T ss_dssp EEEEEEECCCCCCSE-ECC--C-GGGSCEEEEEEEEECCBTTBCSCEEEEEEEECC T ss_pred EEEEEEECCEECCCE-ECC--C-CCHHHCEEEEEEEECCCCCCCCCEEEEEEEECC T ss_conf 999988787246878-778--8-884678999988724678899747999999909 No 35 >3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ... Probab=97.63 E-value=0.00086 Score=44.43 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=88.4 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC Q ss_conf 01101027877202113653222210135666764201440366312201345423544344443442157644668998 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~ 231 (364) |.+=+|++.||-|+. +|+--| ..++..++..++ ..-.+|++|.+|... -|+ . ++++ .-||++++...+ T Consensus 2 i~~I~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~viMGrkT~es-lp~----~--L~~R--~niVlsr~~~~~ 69 (159) T 3dau_A 2 ISLIAALAVDRVIGM-ENAMPW-NLPADLAWFKRN-TLNKPVIMGRHTWES-IGR----P--LPGR--KNIILSSQPGTD 69 (159) T ss_dssp EEEEEEECGGGEEEB-TTBCSS-CCHHHHHHHHHH-HTTSCEEEEHHHHHH-HCS----C--CTTS--CEEEECSSCCSC T ss_pred EEEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCCCHH-HCC----C--CCCC--EEEEEECCCCCC T ss_conf 899999979995328-996374-088999999998-389749997761243-213----6--7997--579982478866 Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE Q ss_conf 02210034446707985465542101100223222223332227889999860799699981238999999978898899 Q gi|254780348|r 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 (364) Q Consensus 232 ~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl 311 (364) .. .... .++...+.. ......++|=||+++...|+. ++|++ T Consensus 70 ~~-----------~~~~------------------------~~~~~~~~~--~~~~~~v~viGG~~iY~~~l~--~~d~i 110 (159) T 3dau_A 70 DR-----------VTWV------------------------KSVDEAIAA--CGDVPEIMVIGGGRVYEQFLP--KAQKL 110 (159) T ss_dssp TT-----------SEEE------------------------SSHHHHHHT--TCSCSCEEECCCHHHHHHHGG--GCSEE T ss_pred CE-----------EEEE------------------------CCHHHHHHH--HCCCCCEEEECCHHHHHHHHH--HCCEE T ss_conf 32-----------6774------------------------169999998--547873699828999999998--79999 Q ss_pred EEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEECC------C-EEEEEEEC Q ss_conf 9996074326887523334545444640544688679------3-69999507 Q gi|254780348|r 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS------D-VCLEYIGK 357 (364) Q Consensus 312 ~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig~------D-v~~~y~~k 357 (364) +++.-+.-..++ .-.| . .....|..+....... + .+.+|.|| T Consensus 111 ~lT~I~~~~e~D-~~FP--~-~d~~~~~~v~~~~~~~d~~n~~~y~f~~y~rk 159 (159) T 3dau_A 111 YLTHIDAEVEGD-THFP--D-YEPDDWESVFSEFHDADAQNSHSYCFEILERR 159 (159) T ss_dssp EEEEECCCCCCS-EECC--C-CCGGGEEEEEEEEECCBTTBSSCEEEEEEEEC T ss_pred EEEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEECC T ss_conf 999757721676-6579--8-89689899998862667778986799999769 No 36 >3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* Probab=97.61 E-value=0.00071 Score=44.98 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=90.2 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE--EEEECCCCC Q ss_conf 011010278772021136532222101356667642014403663122013454235443444434421--576446689 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--RIILDPHFK 229 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~--riVld~~l~ 229 (364) +.+=+|++.+|-|+. +|+--| ..++..++..++ ..-.+|++|.+|... | ....|- -||++++-. T Consensus 9 i~~I~A~~~n~~IG~-~~~lPW-~~~eDl~~Fk~~-T~g~~viMGrkT~es----l-------~~~l~~R~~iVls~~~~ 74 (168) T 3jwk_A 9 VSFMVAMDENRVIGK-DNNLPW-RLPSELQYVKKT-TMGHPLIMGRKNYEA----I-------GRPLPGRRNIIVTRNEG 74 (168) T ss_dssp EEEEEEEETTCEEEB-TTBCSC-CCHHHHHHHHHH-HTTSCEEEEHHHHHH----H-------CSCCTTSCEEEECSCTT T ss_pred EEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-HCCCEEEEECCHHHH----H-------HHCCCCCEEEEECCCCC T ss_conf 999999989997728-997156-789999999998-289809995624465----6-------42589966898337765 Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988 Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364) Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364) .. ..++.+. .++.++++.. ...+.++|=||+.+..+|+. ++| T Consensus 75 ~~------------------------------~~~~~~~----~~~~~~~~~~--~~~~~i~ViGG~~iY~~~l~--~~d 116 (168) T 3jwk_A 75 YH------------------------------VEGCEVA----HSVEEVFELC--KNEEEIFIFGGAQIFDLFLP--YVD 116 (168) T ss_dssp CC------------------------------CTTCEEE----SSHHHHHHHT--TTCSEEEEEECHHHHHHHGG--GCC T ss_pred CC------------------------------CCCCEEE----ECHHHHHHHH--HCCCCEEEECHHHHHHHHHH--HCC T ss_conf 36------------------------------7994897----2289999984--16775399872999998887--699 Q ss_pred EEEEEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEEC--C----C-EEEEEEECC Q ss_conf 99999607432688752333454544464054468867--9----3-699995074 Q gi|254780348|r 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG--S----D-VCLEYIGKN 358 (364) Q Consensus 310 El~ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig--~----D-v~~~y~~k~ 358 (364) +++++.-+....++. ++... ....|.++..+..- + + .+.+|.||+ T Consensus 117 ~i~lT~I~~~~~gD~---~FP~~-d~~~~~~~~~~~~~~~e~n~~~y~f~~y~Rk~ 168 (168) T 3jwk_A 117 KLYITKIHHAFEGDT---FFPEM-DMTNWKEVFVEKGLTDEKNPYTYYYHVYEKQQ 168 (168) T ss_dssp EEEEEEESSCCCCSE---ECCCC-CCTTEEEEEEEECCCBTTBCSCEEEEEEEECC T ss_pred EEEEEEECCCCCCCE---ECCCC-CHHHCEEEEEEECCCCCCCCCCEEEEEEEECC T ss_conf 999998788526777---77988-85898999987234467899668999999579 No 37 >3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* Probab=97.61 E-value=0.00037 Score=46.87 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=82.0 Q ss_pred CCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE Q ss_conf 342220110102787720211365322221013566676420------14403663122013454235443444434421 Q gi|254780348|r 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 (364) Q Consensus 147 ~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~ 220 (364) .+.|-|.+-.|++-|+-|.. +|+--| .-++..++..++-. .-.+|++|.+|... ++.....-|- T Consensus 2 ~~~p~i~iIaA~~~n~gIG~-~g~LPW-~l~~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eS--------ip~~~rPLp~ 71 (227) T 3cse_A 2 SKVPVVGIVAALLPEMGIGF-QGNLPW-RLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWES--------IPQKFRPLPK 71 (227) T ss_dssp -CCCEEEEEEEETTTTEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTT T ss_pred CCCCEEEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCEECC--------CCCCCCCCCC T ss_conf 98976999999889996828-992467-7989999999985677656789389995670022--------7755677899 Q ss_pred --EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEC Q ss_conf --576446689980221003444670798546554210110022322222333222788999986-----0799699981 Q gi|254780348|r 221 --RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-----GRGVTSLLVE 293 (364) Q Consensus 221 --riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~-----~~gi~~iLVE 293 (364) -||++++...... . ...++.+ ..++.+++..|. ..++..|+|= T Consensus 72 R~niVlSr~~~~~~~-----~---------------------~~~~~~~----~~sl~~al~~l~~~~~~~~~~~~IfVI 121 (227) T 3cse_A 72 RINVVVSRSFDGELR-----K---------------------VEDGIYH----SNSLRNCLTALQSSLANENKIERIYII 121 (227) T ss_dssp SEEEEECTTSSSSCE-----E---------------------EETTEEE----ESCHHHHHHHHTCHHHHTTCEEEEEEC T ss_pred CEEEEEECCCCCCCC-----C---------------------CCCCEEE----ECCHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 748997247772223-----5---------------------7686699----374899999988888860799729998 Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECEEE Q ss_conf 238999999978898899999607432 Q gi|254780348|r 294 GGAAVAHSFINSRLVDSIILYRSQIVI 320 (364) Q Consensus 294 GG~~l~~sfl~~~LvDEl~ifiaP~il 320 (364) ||+++..+|| .++|+++++.-.... T Consensus 122 GG~~IY~~~l--~~~d~i~lT~I~~~~ 146 (227) T 3cse_A 122 GGGEIYRQSM--DLADHWLITKIMPLP 146 (227) T ss_dssp CCHHHHHHHT--TTCSEEEEEEEEECT T ss_pred CCHHHHHHHH--HHCCEEEEEEEEECC T ss_conf 9999999998--668989999994016 No 38 >1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A* Probab=97.43 E-value=0.0013 Score=43.28 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=71.1 Q ss_pred HHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCC Q ss_conf 0110102787720211365322221013566676420144036631220134542354434444344215--76446689 Q gi|254780348|r 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFK 229 (364) Q Consensus 152 V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~ 229 (364) |.+=+|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|... ++.....-|-| ||++++.+ T Consensus 2 i~lI~A~~~n~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~vIMGrkT~eS--------ip~~~rPLp~R~niVlsr~~~ 70 (159) T 1df7_A 2 VGLIWAQATSGVIGR-GGDIPW-RLPEDQAHFREI-TMGHTIVMGRRTWDS--------LPAKVRPLPGRRNVVLSRQAD 70 (159) T ss_dssp EEEEEEEETTSEEEB-TTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH--------SCGGGSSCTTSEEEEECSSTT T ss_pred EEEEEEECCCCCEEC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCEECC--------CCCCCCCCCCCEEEEEECCCC T ss_conf 599999889997618-996176-788999999996-379829997870056--------698763699965999716644 Q ss_pred CCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCC Q ss_conf 98022100344467079854655421011002232222233322278899998607996999812389999999788988 Q gi|254780348|r 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 (364) Q Consensus 230 i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvD 309 (364) ... .++.++ .++++.+ ....++|=||+++..+++. ++| T Consensus 71 ~~~------------------------------~~~~v~----~sl~~al------~~~~i~ViGG~~iY~~~l~--~~~ 108 (159) T 1df7_A 71 FMA------------------------------SGAEVV----GSLEEAL------TSPETWVIGGGQVYALALP--YAT 108 (159) T ss_dssp CCC------------------------------TTSEEE----SSHHHHT------TSSSEEECCCHHHHHHHGG--GCS T ss_pred CCC------------------------------CCCEEC----CCHHHHH------CCCCEEEECHHHHHHHHHH--HCC T ss_conf 367------------------------------886730----6998851------3675899644899999987--689 Q ss_pred EEEEEEECEEEC Q ss_conf 999996074326 Q gi|254780348|r 310 SIILYRSQIVIG 321 (364) Q Consensus 310 El~ifiaP~ilG 321 (364) +++++.-...+. T Consensus 109 ~i~lT~I~~~~~ 120 (159) T 1df7_A 109 RCEVTEVDIGLP 120 (159) T ss_dssp EEEEEEECCCCC T ss_pred EEEEEEEEECCC T ss_conf 999999950278 No 39 >2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Probab=97.40 E-value=0.0014 Score=43.10 Aligned_cols=94 Identities=28% Similarity=0.413 Sum_probs=60.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC--CCCCHHHHHHHHHHCCHH-CC-CEEE-E Q ss_conf 968778999999999999870882188896479998-6998999984388--769848999999730010-69-8899-9 Q gi|254780348|r 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY--GGCPHAEVQALEEAGEEA-RG-ATAY-V 74 (364) Q Consensus 1 m~~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~--~G~~HAE~~al~~~~~~~-~~-atly-v 74 (364) ||+|..|+..+.+|..... ....+-|-.|||.+. +||+|+ +|.... .++-|||..|+-.+-..- +. ..++ | T Consensus 1 m~lt~~~~~Li~~A~~~~~--~~~~~s~f~VgAa~~~~~G~i~-~G~NvEN~s~glCAEr~Ai~~a~~~~~~~~~~i~~v 77 (130) T 2z3g_A 1 MPLSQEESTLIERATATIN--SIPISEDYSVASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAI 77 (130) T ss_dssp -CCCHHHHHHHHHHHHHHH--HSCCCSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHH--HCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 9989899999999999998--4598789958999998999999-887533898874453678876411246761799999 Q ss_pred ------ECCCCCCCCCCCHHHHHHHHCCCC-EEEEE Q ss_conf ------057321157521055565301343-24663 Q gi|254780348|r 75 ------TLEPCSHYGRSPPCAQFIIECGIR-RVVVC 103 (364) Q Consensus 75 ------tLEPC~h~GktppC~~~ii~~gIk-~Vvi~ 103 (364) .+-|| +.|-+.|.+.+-. +|++. T Consensus 78 ~~~~~~~~~PC------G~CRQ~l~E~~~~~~v~~~ 107 (130) T 2z3g_A 78 GNENRGILSPC------GRCRQVLLDLHPGIKAIVK 107 (130) T ss_dssp ETTTTEEECCC------HHHHHHHHHHCTTCEEEEE T ss_pred ECCCCCCCCCC------HHHHHHHHHHCCCCEEEEE T ss_conf 27898677986------8899999997899779999 No 40 >3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Probab=97.25 E-value=0.0024 Score=41.41 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=71.7 Q ss_pred CCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHC------CCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 22201101027877202113653222210135666764201------440366312201345423544344443442157 Q gi|254780348|r 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ------SDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 (364) Q Consensus 149 rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~------~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~ri 222 (364) ++..++-.|+..|+=|.. +|+--| .-++..++..++-.. -.+|++|.+|...= |. | + ++++ +-| T Consensus 4 ~~~~iiVaa~~~n~gIG~-~g~LPW-~lp~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eSi-p~---r-P-Lp~R--~nI 73 (521) T 3hj3_A 4 KNVSIVVAASVLSSGIGI-NGQLPW-SISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSI-GR---R-P-LKNR--IIV 73 (521) T ss_dssp CCEEEEEEEETTTCEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGG-TT---C-C-CTTS--EEE T ss_pred CCCEEEEEEECCCCEECC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHC-CC---C-C-CCCC--EEE T ss_conf 872899998558981727-992378-79899999999858999767874599847625418-95---5-6-9779--699 Q ss_pred EECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCHHHHHHH Q ss_conf 64466899802210034446707985465542101100223222223332227889999860-79969998123899999 Q gi|254780348|r 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHS 301 (364) Q Consensus 223 Vld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~-~gi~~iLVEGG~~l~~s 301 (364) |++++..-.. ....++++. +++++++.+.+ ..+..|+|=||+++... T Consensus 74 VlSr~~~~~~--------~~~~v~~~~------------------------sl~~al~~~~~~~~~~~ifVIGG~~IY~~ 121 (521) T 3hj3_A 74 VISSSLPQDE--------ADPNVVVFR------------------------NLEDSIENLMNDDSIENIFVCGGESIYRD 121 (521) T ss_dssp EECSSSCCCC--------SCSSEEEES------------------------STTTTTTSSSSCTTEEEEEEEECHHHHHH T ss_pred EECCCCCCCC--------CCCCEEEEC------------------------CHHHHHHHHHHCCCCCEEEEECCHHHHHH T ss_conf 9999894224--------799989989------------------------99999999874677775999868999998 Q ss_pred HHHCCCCCEEEEEEEC Q ss_conf 9978898899999607 Q gi|254780348|r 302 FINSRLVDSIILYRSQ 317 (364) Q Consensus 302 fl~~~LvDEl~ifiaP 317 (364) +|...++|+++++.-. T Consensus 122 ~L~~~~~d~iylT~I~ 137 (521) T 3hj3_A 122 ALKDNFVDRIYLTRVA 137 (521) T ss_dssp HHHTTCCSEEEEEEEC T ss_pred HCCCCCCCEEEEEEEE T ss_conf 6575667889999980 No 41 >1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* Probab=97.13 E-value=0.00086 Score=44.42 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=74.8 Q ss_pred CCHHHHH-HCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE- Q ss_conf 2220110-102787720211365322221013566676420------14403663122013454235443444434421- Q gi|254780348|r 149 RSHITLK-IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM- 220 (364) Q Consensus 149 rP~V~lK-~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~- 220 (364) +|-+++= .|++-|+-|.. +|+--| .-++..++..++-. .-.+|++|.+|... ++.....-|- T Consensus 3 ~p~i~~ivaA~~~n~gIG~-~~~LPW-~l~~Dl~~Fk~~T~~~~~~~~~n~vIMGRkT~eS--------ip~~~rPLp~R 72 (192) T 1aoe_A 3 KPNVAIIVAALKPALGIGY-KGKMPW-RLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWES--------IPQKFRPLPDR 72 (192) T ss_dssp SCCEEEEEEEETTTTEEEB-TTBCSC-CCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHH--------SCGGGCSCTTS T ss_pred CCCEEEEEEEECCCCEECC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH--------CCCCCCCCCCC T ss_conf 9856999999579972948-991257-5989999999985677766778189996774664--------77344467997 Q ss_pred -EEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH Q ss_conf -5764466899802210034446707985465542101100223222223332227889999860799699981238999 Q gi|254780348|r 221 -RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 (364) Q Consensus 221 -riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~ 299 (364) -||++++..-. ....++.+ ..+++++++.+. +...|+|=||+++. T Consensus 73 ~niVlSr~~~~~----------------------------~~~~~v~~----~~s~~~al~~~~--~~~~i~ViGG~~IY 118 (192) T 1aoe_A 73 LNIILSRSYENE----------------------------IIDDNIIH----ASSIESSLNLVS--DVERVFIIGGAEIY 118 (192) T ss_dssp EEEEECTTCCCE----------------------------EEETTEEE----ESSHHHHHHTCC--SEEEEEECCCHHHH T ss_pred EEEEEECCCCCC----------------------------CCCCEEEE----ECCHHHHHHHHC--CCCEEEEECCHHHH T ss_conf 589996256345----------------------------45430477----488999998852--89629998899999 Q ss_pred HHHHHCCCCCEEEEEEEC Q ss_conf 999978898899999607 Q gi|254780348|r 300 HSFINSRLVDSIILYRSQ 317 (364) Q Consensus 300 ~sfl~~~LvDEl~ifiaP 317 (364) .+||+..++|+++++.-. T Consensus 119 ~~~l~~~~~d~l~iT~I~ 136 (192) T 1aoe_A 119 NELINNSLVSHLLITEIE 136 (192) T ss_dssp HHHTTSTTEEEEEEEEEE T ss_pred HHHHCCCCCCEEEEEEEE T ss_conf 998456578989999995 No 42 >2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ... Probab=97.11 E-value=0.0029 Score=40.85 Aligned_cols=149 Identities=13% Similarity=0.148 Sum_probs=86.4 Q ss_pred HHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH Q ss_conf 11010278772021136532222101356667642014403663122013454235443444434421576446689980 Q gi|254780348|r 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 (364) Q Consensus 153 ~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~ 232 (364) .+=.|++.+|-|+. +|+--| .-++..++..++ ..-.+|++|.+|... |.-.++ ++ .-||++++-.... T Consensus 4 ~lI~A~~~~~~IG~-~~~lPW-~~~~Dl~~Fk~~-T~~~~vimGr~T~~s----~~~~l~---~R--~niVls~~~~~~~ 71 (159) T 2w9h_A 4 SILVAHDLQRVIGF-ENQLPW-HLPNDLKHVKKL-STGHTLVMGRKTFES----IGKPLP---NR--RNVVLTSDTSFNV 71 (159) T ss_dssp EEEEEECTTCEEEB-TTBCSS-CCHHHHHHHHHH-HTTSEEEEEHHHHHH----HCSCCT---TS--EEEEECSCTTCCC T ss_pred EEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHH-CCCCEEEEECCCCHH----HHHCCC---CC--EEEEEEECCCCCC T ss_conf 99999999997737-996376-488999999985-579739996761343----111348---97--5899971322345 Q ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEE Q ss_conf 22100344467079854655421011002232222233322278899998607996999812389999999788988999 Q gi|254780348|r 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 (364) Q Consensus 233 ~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~ 312 (364) ....++. +++++++ -...|+|=||+.+...|+. .+|+++ T Consensus 72 ----------~~~~~~~------------------------s~e~~~~-----~~~~i~ViGG~~iY~~~l~--~~d~i~ 110 (159) T 2w9h_A 72 ----------EGVDVIH------------------------SIEDIYQ-----LPGHVFIFGGQTLFEEMID--KVDDMY 110 (159) T ss_dssp ----------TTCEEEC------------------------SGGGGGG-----SCSCEEEEECHHHHHHHTT--TCSEEE T ss_pred ----------CCCCCCC------------------------CHHHHHH-----CCCEEEEECCHHHHHHHHH--HCCEEE T ss_conf ----------6643536------------------------6889752-----1220689766899999886--589999 Q ss_pred EEEECEEECCCCCCCCCCCCCCCCCCEEEEEEEEC----CC---EEEEEEECC Q ss_conf 99607432688752333454544464054468867----93---699995074 Q gi|254780348|r 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG----SD---VCLEYIGKN 358 (364) Q Consensus 313 ifiaP~ilG~~g~~s~~~~~~~~~~~~l~~~~~ig----~D---v~~~y~~k~ 358 (364) ++.-+...-++ .-.| . .....|++++..... ++ .+.+|.||+ T Consensus 111 lT~I~~~~~gD-~ffP--~-~~~~~~~~~~~~~~~~~e~n~~~y~f~~y~Rkk 159 (159) T 2w9h_A 111 ITVIEGKFRGD-TFFP--P-YTFEDWEVASSVEGKLDEKNTIPHTFLHLIRKK 159 (159) T ss_dssp EEEECSCCCCS-EECC--C-CCTTTEEEEEEEECCCBTTBCSCEEEEEEEEC- T ss_pred EEEECCCCCCC-EECC--C-CCHHHCEEEEEEECCCCCCCCCCEEEEEEEECC T ss_conf 99817762677-7889--9-996899999989866577899878999999779 No 43 >1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Probab=96.69 E-value=0.012 Score=36.78 Aligned_cols=92 Identities=24% Similarity=0.420 Sum_probs=56.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCEEEEEE-ECCEEEEEEECC----CCCCCHHHHHHHHHH---CCHHCC Q ss_conf 96877899999999999987088---2188896479998-699899998438----876984899999973---001069 Q gi|254780348|r 1 MPVSSFDARFMSAALRFSRWHVG---LTSTNPSVACLIV-KDGIVIGRGVTA----YGGCPHAEVQALEEA---GEEARG 69 (364) Q Consensus 1 m~~~~~d~~~m~~a~~~a~~~~g---~t~pNP~Vg~viv-~~g~ii~~g~~~----~~G~~HAE~~al~~~---~~~~~~ 69 (364) |++..++.+-++.-++.|.+... .-+-|=.|||.+. +||+|+ .|... ...+-+||..||-++ |.+..- T Consensus 1 ~~~~~~~~~~~~~L~~~a~~a~~~ayaPYS~F~VGAAllt~~G~i~-~G~NvEnas~~~~lCAEr~Ai~~a~~~g~~~~~ 79 (142) T 1r5t_A 1 MKVGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGW 79 (142) T ss_dssp -CCTTSCHHHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCE T ss_conf 9756788899999999999999718088568937899996899999-846522566666649999999999980898633 Q ss_pred CEEEEE-------CCCCCCCCCCCHHHHHHHHCCCCE Q ss_conf 889990-------573211575210555653013432 Q gi|254780348|r 70 ATAYVT-------LEPCSHYGRSPPCAQFIIECGIRR 99 (364) Q Consensus 70 atlyvt-------LEPC~h~GktppC~~~ii~~gIk~ 99 (364) ..+.+. .-|| +.|-+.|.+.+-+. T Consensus 80 ~~~v~~~~~~~~~~sPC------G~CRQ~l~Ef~~~~ 110 (142) T 1r5t_A 80 KCMVICGDSEDQCVSPC------GVCRQFINEFVVKD 110 (142) T ss_dssp CEEEEEESCSSSCCCCC------HHHHHHHHTTSCTT T ss_pred EEEEEEECCCCCCCCCC------HHHHHHHHHHCCCC T ss_conf 89999605788878987------88999999957998 No 44 >3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Probab=96.48 E-value=0.0037 Score=40.18 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=81.2 Q ss_pred HHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------CCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCE Q ss_conf 110102787720211365322221013566676420------------14403663122013454235443444434421 Q gi|254780348|r 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA------------QSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 (364) Q Consensus 153 ~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa------------~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~ 220 (364) .+=.|++.+|-|.. +|+--| .-++..++..++-. +..+|++|.+|... ++....+-|- T Consensus 24 slIvA~~~n~gIG~-~g~LPW-~lp~Dmk~Fk~~T~g~~~~~~~~~~~k~n~VIMGRkT~eS--------iP~~~RPLp~ 93 (521) T 3irm_A 24 SLVVAVDEHGGIGD-GRSIPW-NVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDS--------IPPKFRPLPG 93 (521) T ss_dssp EEEEEEETTSEEES-SSCCCC-CCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHT--------SCGGGCSCTT T ss_pred EEEEEECCCCCCCC-CCCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHH--------CCCCCCCCCC T ss_conf 89999989997568-990157-4989999999986799865555556786179941765877--------7978898967 Q ss_pred E--EEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC----CCCEEEECC Q ss_conf 5--7644668998022100344467079854655421011002232222233322278899998607----996999812 Q gi|254780348|r 221 R--IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEG 294 (364) Q Consensus 221 r--iVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~----gi~~iLVEG 294 (364) | |||+++........-.. ...........++.+ ..+++++++.+.+. ++..|+|=| T Consensus 94 R~NIVLSr~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v----~~sle~al~~~~~~~~~~~~~~IfVIG 155 (521) T 3irm_A 94 RLNVVLSSTLTTQHLLDGLP--------------DEEKRNLHADSIVAV----NGGLEQALRLLASPNYTPSIETVYCIG 155 (521) T ss_dssp EEEEEECSSCCHHHHHHTSS--------------SHHHHHHHGGGEEEE----SSCHHHHHHHHTSTTTTTTEEEEEECC T ss_pred CCEEEECCCCCCCCCCCCCC--------------CCCCCCCCCCCCEEE----ECCHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 95899946786233443333--------------211123467774698----589999999986542036786399925 Q ss_pred HHHHHHHHHHC---CCCCEEEEEEECE-EECCC Q ss_conf 38999999978---8988999996074-32688 Q gi|254780348|r 295 GAAVAHSFINS---RLVDSIILYRSQI-VIGEG 323 (364) Q Consensus 295 G~~l~~sfl~~---~LvDEl~ifiaP~-ilG~~ 323 (364) |+++...||+. .++|+++++.-.. ..+.+ T Consensus 156 G~~IY~~aL~~~~~~~~d~iylT~I~~~~~~~d 188 (521) T 3irm_A 156 GGSVYAEALRPPCVHLLQAIYRTTIRASESSCS 188 (521) T ss_dssp CHHHHHHHTSTTGGGGEEEEEEEEECCSSCCCS T ss_pred CHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCE T ss_conf 799999986351223465699998616776971 No 45 >2fr5_A Cytidine deaminase; zinc, tetrahydrouridine, protein- inhibitor complex, alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Probab=96.44 E-value=0.016 Score=35.81 Aligned_cols=81 Identities=23% Similarity=0.291 Sum_probs=49.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCH---HCCCEEEEE----- Q ss_conf 9999999999870882188896479998-6998999984388----76984899999973001---069889990----- Q gi|254780348|r 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEE---ARGATAYVT----- 75 (364) Q Consensus 9 ~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~---~~~atlyvt----- 75 (364) +.++.| ..|++....-+-|=.|||.+. +||+|+ .|.+.. ..+-|||..||-.|-.. ...+...++ T Consensus 17 ~L~~~A-~~a~~~ayaPYS~F~VGAAll~~dG~i~-~G~NvEna~~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~~~ 94 (146) T 2fr5_A 17 RLLLSS-REAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEE 94 (146) T ss_dssp HHHHHH-HHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSS T ss_pred HHHHHH-HHHHHCCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCC T ss_conf 999999-9999718298669946699996899999-99965576665662588899999887278863799998257888 Q ss_pred -CCCCCCCCCCCHHHHHHHHCCC Q ss_conf -5732115752105556530134 Q gi|254780348|r 76 -LEPCSHYGRSPPCAQFIIECGI 97 (364) Q Consensus 76 -LEPC~h~GktppC~~~ii~~gI 97 (364) .-|| +.|-+.|.+.+- T Consensus 95 ~~~PC------G~CRQ~l~E~~~ 111 (146) T 2fr5_A 95 FISPC------GACRQVMREFGT 111 (146) T ss_dssp CCCCC------HHHHHHHHHTCS T ss_pred CCCCC------HHHHHHHHHHCC T ss_conf 88987------899999997399 No 46 >3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Probab=96.42 E-value=0.014 Score=36.28 Aligned_cols=96 Identities=27% Similarity=0.349 Sum_probs=52.8 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCC-CEEEE Q ss_conf 778999999999999870882188896479998-69989999843887----6984899999973---001069-88999 Q gi|254780348|r 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARG-ATAYV 74 (364) Q Consensus 4 ~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~-atlyv 74 (364) .-||.+=+-.+...|++....-.-|=.|||++. +||+|. .|.+... .+-|||..||-++ |.+... ..++| T Consensus 7 ~~m~~~~L~~~A~~a~~~ayaPyS~f~VGAAl~~~~G~i~-~G~NvEnas~~~~~CAEr~Ai~~a~~~g~~~~~~~~iav 85 (138) T 3dmo_A 7 HHMTHHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAV 85 (138) T ss_dssp TTCCHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEE T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE T ss_conf 5639999999999999838198568858999997899999-899670565666647888999999974887553699999 Q ss_pred -E-----CCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf -0-----5732115752105556530134324663010 Q gi|254780348|r 75 -T-----LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 (364) Q Consensus 75 -t-----LEPC~h~GktppC~~~ii~~gIk~Vvi~~~D 106 (364) + +-|| +.|.+.|.+.+=..+.|-..+ T Consensus 86 ~~~~~~~~sPC------G~CRQ~l~E~~~~~~~i~l~~ 117 (138) T 3dmo_A 86 VGETHGPIAPC------GACRQVMIELGKPTLEVVLTN 117 (138) T ss_dssp EESCSSSCCCC------HHHHHHHHHHHCTTCEEEEEC T ss_pred ECCCCCCCCCC------HHHHHHHHHHCCCCCEEEEEC T ss_conf 84899867989------889999999679994899998 No 47 >3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, PSI-2, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Probab=95.87 E-value=0.029 Score=34.12 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=58.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCHH--CCCEEEEE--- Q ss_conf 8999999999999870882188896479998-6998999984388----769848999999730010--69889990--- Q gi|254780348|r 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA--RGATAYVT--- 75 (364) Q Consensus 6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~~--~~atlyvt--- 75 (364) .|+..++.|.+..++.-- -|=.|||.+. +||+|+ .|.... ..+-+||..||-+|-..- .-.+++|+ T Consensus 3 ~~~~L~~~A~~~~~~ay~---S~f~VGAAl~~~dG~i~-~G~NvEnas~~~~~CAEr~Ai~~a~s~g~~~~~~i~v~~~~ 78 (142) T 3b8f_A 3 IEQQLYDVVKQLIEQRYP---NDWGGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLAREN 78 (142) T ss_dssp HHHHHHHHHHHHHHHHCS---SSCEEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESS T ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCCCEE-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf 799999999999997086---78976999994899999-98701477777543288899999997899746999999638 Q ss_pred -------CCCCCCCCCCCHHHHHHHHCCCC-EEEE Q ss_conf -------57321157521055565301343-2466 Q gi|254780348|r 76 -------LEPCSHYGRSPPCAQFIIECGIR-RVVV 102 (364) Q Consensus 76 -------LEPC~h~GktppC~~~ii~~gIk-~Vvi 102 (364) +-|| +.|-+.|.+.+.. +|++ T Consensus 79 ~~~~~~~~~PC------G~CRQ~l~Ef~~~~~v~~ 107 (142) T 3b8f_A 79 EHSELKVLSPC------GVCQERLFYWGPEVQCAI 107 (142) T ss_dssp TTSCCEECCCC------HHHHHHHGGGCTTCEEEC T ss_pred CCCCCCCCCCC------HHHHHHHHHHCCCCEEEE T ss_conf 98866456997------889999998699968999 No 48 >2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Probab=95.80 E-value=0.042 Score=33.07 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHHCCHH--CCCEEEEEC--- Q ss_conf 999999999999870882188896479998-6998999984388----769848999999730010--698899905--- Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA--RGATAYVTL--- 76 (364) Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~~~~~--~~atlyvtL--- 76 (364) .+..++.|++..++. ..-.-|=.|||.+. ++|+|+ .|.... ..+-|||..||-++-..- +-.+++|.- T Consensus 12 ~~~L~~~A~~a~~~a-yaPYS~f~VGAAl~~~~G~i~-~G~NvEn~s~~~~~CAEr~Ai~~a~~~g~~~~~~i~v~~~~~ 89 (141) T 2d30_A 12 SKQLIQEAIEARKQA-YVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTK 89 (141) T ss_dssp HHHHHHHHHHHHTTC-BCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCS T ss_pred HHHHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 999999999999648-488678938999997899999-999552677775306899989999854886379999983887 Q ss_pred ---CCCCCCCCCCHHHHHHHHCC--CCEEEEECCC Q ss_conf ---73211575210555653013--4324663010 Q gi|254780348|r 77 ---EPCSHYGRSPPCAQFIIECG--IRRVVVCVDD 106 (364) Q Consensus 77 ---EPC~h~GktppC~~~ii~~g--Ik~Vvi~~~D 106 (364) -|| +.|-+.|.+.+ --+|++...| T Consensus 90 ~~~sPC------G~CRQ~l~E~~~~~~~v~~~~~~ 118 (141) T 2d30_A 90 RPVPPC------GACRQVMVELCKQDTKVYLSNLH 118 (141) T ss_dssp SCCCCC------HHHHHHHHHHSCTTCEEEEECSS T ss_pred CCCCCC------HHHHHHHHHHCCCCCEEEEECCC T ss_conf 667966------88999999866898389998799 No 49 >2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Probab=95.43 E-value=0.022 Score=34.94 Aligned_cols=118 Identities=20% Similarity=0.354 Sum_probs=74.7 Q ss_pred CCCEEEEEEE--CC--E-EEEEEECC-CCCCCHHHHHHHHHHCCHHC-----CCEEEEECCCCCCCCCCCHHHHHHHHC- Q ss_conf 8964799986--99--8-99998438-87698489999997300106-----988999057321157521055565301- Q gi|254780348|r 28 NPSVACLIVK--DG--I-VIGRGVTA-YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIEC- 95 (364) Q Consensus 28 NP~Vg~viv~--~g--~-ii~~g~~~-~~G~~HAE~~al~~~~~~~~-----~atlyvtLEPC~h~GktppC~~~ii~~- 95 (364) |-.-=|-.|+ ++ . -..+|+-. +.++-|||+.=|......+. .-|.|+|=-||. .||+.|.+. T Consensus 32 ~~tyLCY~V~~~~~~~~~~~~~G~~~n~~~~~HAE~~Fl~~i~~~l~p~~~y~VTwy~SWSPC~------~CA~~va~FL 105 (190) T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA------ACADRIIKTL 105 (190) T ss_dssp CCEEEEEEEEEEETTTEEEEEEEEEEESSCSSCHHHHHHHHTSCCCCTTCEEEEEEEEEECCCH------HHHHHHHHHH T ss_pred CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHH------HHHHHHHHHH T ss_conf 8668999995468998766765783588887439999999998624977549999997449649------9999999999 Q ss_pred ----CCCEEEEECC-----CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCC-CCCCHHHH Q ss_conf ----3432466301-----01211012433110018988962221012320012222011-34222011 Q gi|254780348|r 96 ----GIRRVVVCVD-----DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITL 154 (364) Q Consensus 96 ----gIk~Vvi~~~-----DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~-~~rP~V~l 154 (364) .++=.++++. ||+- -+|...|.++|+.|..+--+|...-=+-|..... .++||--. T Consensus 106 ~~~~~v~L~If~sRLY~~~~~~~---q~GLr~L~~aG~~v~iM~~~eF~~CW~nFVd~~~~~g~~F~PW 171 (190) T 2nyt_A 106 SKTKNLRLLILVGRLFMWEEPEI---QAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 171 (190) T ss_dssp HHCTTEEEEEEEEECSSTTSHHH---HHHHHHHHHTTCEEEECCHHHHHHHHHHHBCCCC----CCCCC T ss_pred HHCCCEEEEEEHHHHHHHCCHHH---HHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 87899079988635135268779---9999999987996896083899999999847766789986875 No 50 >1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Probab=95.40 E-value=0.061 Score=31.94 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=56.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC----CCCCHHHHHHHHHH---CCHHCCCEEEEE--- Q ss_conf 999999999999870882188896479998-6998999984388----76984899999973---001069889990--- Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY----GGCPHAEVQALEEA---GEEARGATAYVT--- 75 (364) Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~----~G~~HAE~~al~~~---~~~~~~atlyvt--- 75 (364) ++..|+.|++..+++. .-.-|=.|||++. ++|+|+ .|+... ..+-+||..|+-++ ++.... +++|. T Consensus 3 ~~~L~~~A~~a~~~ay-aPyS~f~VGAa~~~~~G~iy-~G~NvE~~~~~~~~cAEr~Ai~~a~~~g~~~~~-~i~v~~~~ 79 (136) T 1uwz_A 3 RQELITEALKARDMAY-APYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQ-MLAVAADT 79 (136) T ss_dssp HHHHHHHHHHHHTTCB-CTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEE-EEEEEESC T ss_pred HHHHHHHHHHHHHHCC-CCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCE-EEEEEECC T ss_conf 8999999999997274-97568928999996899999-898051665556412888888787751677522-89999667 Q ss_pred ---CCCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf ---5732115752105556530134324663010 Q gi|254780348|r 76 ---LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 (364) Q Consensus 76 ---LEPC~h~GktppC~~~ii~~gIk~Vvi~~~D 106 (364) +-||- .|-+.|.+.+-+.+.|-..+ T Consensus 80 ~~~~sPCG------~CRQ~l~E~~~~~~~i~~~~ 107 (136) T 1uwz_A 80 PGPVSPCG------ACRQVISELCTKDVIVVLTN 107 (136) T ss_dssp SSSCCCCH------HHHHHHHHHSCTTCEEEEEC T ss_pred CCCCCCCH------HHHHHHHHHCCCCCEEEEEC T ss_conf 98767488------99999998468982899988 No 51 >1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1 Probab=95.30 E-value=0.074 Score=31.39 Aligned_cols=138 Identities=12% Similarity=-0.009 Sum_probs=65.4 Q ss_pred CCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEE--EEECCCCCCCHHH Q ss_conf 02787720211365322221013566676420144036631220134542354434444344215--7644668998022 Q gi|254780348|r 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDS 234 (364) Q Consensus 157 A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~r--iVld~~l~i~~~~ 234 (364) |.+.|+-|. .+|+--|---++..++..++ ..-.+|++|.+|... | ...-|-| ||++++.+-... T Consensus 15 ~~~~~~~IG-~~g~LPW~~l~~Dm~~Fk~~-T~~~~vIMGrkT~eS----l-------p~pLp~R~nIVlSr~~~~~~~- 80 (193) T 1juv_A 15 DGFNELAFG-LGDGLPWGRVKKDLQNFKAR-TEGTIMIMGAKTFQS----L-------PTLLPGRSHIVVCDLARDYPV- 80 (193) T ss_dssp TSCEEEEEE-BTTBCTTCCCHHHHHHHHHH-HTTSEEEEEHHHHHT----C-------SSCCTTSCEEEECCTTSCCCC- T ss_pred CCCCCCEEC-CCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCHHH----H-------HHCCCCCEEEEECCCCCCCCC- T ss_conf 224586471-79948884698999999998-289859997772154----3-------004899609998578755545- Q ss_pred HHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEE Q ss_conf 10034446707985465542101100223222223332227889999860799699981238999999978898899999 Q gi|254780348|r 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 (364) Q Consensus 235 ~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~~~LvDEl~if 314 (364) ..+... ..++.+-.. ..... ........ ...++ ..........|+|=||+.+..++|. ++|+++++ T Consensus 81 --~~~~~~--~~~~~~~~~--~~~~~-~~~~~~~~----~~~~~-~~~~~~~~~~v~IiGG~~IY~~~l~--~~d~i~lT 146 (193) T 1juv_A 81 --TKDGDL--AHFYITWEQ--YITYI-SGGEIQVS----SPNAP-FETMLDQNSKVSVIGGPALLYAALP--YADEVVVS 146 (193) T ss_dssp --CTTCCC--CSEEECHHH--HHHHH-TTCCEEEE----CTTSS-CEEEECTTSCEEEEECHHHHHHHGG--GCSEEEEE T ss_pred --CCCCCC--EEEECCHHH--HHHHH-CCCCEEEC----CHHHH-HHHHHCCCCEEEEECCHHHHHHHHH--HCCEEEEE T ss_conf --556662--377368999--99874-25633414----68999-9985368965999769999999986--68999999 Q ss_pred EECEEECC Q ss_conf 60743268 Q gi|254780348|r 315 RSQIVIGE 322 (364) Q Consensus 315 iaP~ilG~ 322 (364) .-+.-... T Consensus 147 ~I~~~~~~ 154 (193) T 1juv_A 147 RIVKRHRV 154 (193) T ss_dssp EEEESSCC T ss_pred EECCCCCC T ss_conf 97252356 No 52 >3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X Probab=95.29 E-value=0.055 Score=32.25 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=55.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHHCCHHC-C-CEEEEE----- Q ss_conf 99999999999870882188896479998-69989999843887----698489999997300106-9-889990----- Q gi|254780348|r 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEAGEEAR-G-ATAYVT----- 75 (364) Q Consensus 8 ~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~~~~~~-~-atlyvt----- 75 (364) +...+.|++..++. ..-.-|=.|||++. ++|+|+ .|..... .+-+||..|+..+-.... . ..+.|. T Consensus 26 ~~L~~~A~~a~~~A-yaPYS~F~VGAal~t~~G~i~-~G~NvEnas~~~~iCAE~~Ai~~a~s~g~~~~~~i~vv~~~~~ 103 (150) T 3mpz_A 26 NALRSKAIEVSRHA-YAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGG 103 (150) T ss_dssp HHHHHHHHHHHTTC-BCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTTSC T ss_pred HHHHHHHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 99999999999638-487568928799997899999-8984505656666116778999998648874117999946897 Q ss_pred -CCCCCCCCCCCHHHHHHHHCCCCEEEE Q ss_conf -573211575210555653013432466 Q gi|254780348|r 76 -LEPCSHYGRSPPCAQFIIECGIRRVVV 102 (364) Q Consensus 76 -LEPC~h~GktppC~~~ii~~gIk~Vvi 102 (364) +-|| +.|-+.|.+.+-.+++| T Consensus 104 ~~sPC------G~CRQ~l~Ef~~~~~~i 125 (150) T 3mpz_A 104 VLMPC------GRCRQVLLEHGGPELLI 125 (150) T ss_dssp BCCCC------HHHHHHHHHHHCTTCEE T ss_pred CCCCC------HHHHHHHHHHCCCCEEE T ss_conf 24886------87899999858998899 No 53 >3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Probab=95.22 E-value=0.095 Score=30.64 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=72.0 Q ss_pred CCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECC Q ss_conf 88896479998699899998438876984899999973001069889990573211575210555653013432466301 Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 (364) Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~ 105 (364) -|.-.|-|.+...|+|++.- .+-..|||....+. .+..|-..|||--||-. |+..+.++|+.-||+--. T Consensus 19 ipkrtvtaalleggeivave---eaddehaerklvrr--hdvegkvvfvtarpcly------carelaeagvagvvylgr 87 (278) T 3g8q_A 19 IPKRTVTAALLEGGEIVAVE---EADDEHAERKLVRR--HDVEGKVVFVTARPCLY------CARELAEAGVAGVVYLGR 87 (278) T ss_dssp SCCSSCEEEEEETTEEEEEE---ECSSSCHHHHHHHH--SCCTTCEEEESSCCCHH------HHHHHHTTTCCEEEEEEC T ss_pred CCHHHHHHHHHCCCEEEEEE---CCCHHHHHHHHHHH--HCCCCEEEEEECCHHHH------HHHHHHHCCCCEEEEECC T ss_conf 71356469875587089885---04616777766765--05663399997651788------899987555205899615 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCH Q ss_conf 0121101243311001898896222101 Q gi|254780348|r 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133 (364) Q Consensus 106 DPnp~v~gkGi~~L~~~GI~V~~~~~~~ 133 (364) -.|-|--+|...|++|-.+-.+| T Consensus 88 -----grglgpyylarsgvevvevhpde 110 (278) T 3g8q_A 88 -----GRGLGPYYLARSGVEVVEVHPDE 110 (278) T ss_dssp -----SSCCHHHHHHTTTCEEEEEEECS T ss_pred -----CCCCCCEEEECCCCEEEEECCCC T ss_conf -----78777321311683799957998 No 54 >3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Probab=95.12 E-value=0.19 Score=28.57 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=47.8 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCC-CEEEEEE-ECCEEEEEEECC--CCCCCHHHHHHHHHHC---CHHCCCEEEEE Q ss_conf 877899999999999987088218889-6479998-699899998438--8769848999999730---01069889990 Q gi|254780348|r 3 VSSFDARFMSAALRFSRWHVGLTSTNP-SVACLIV-KDGIVIGRGVTA--YGGCPHAEVQALEEAG---EEARGATAYVT 75 (364) Q Consensus 3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP-~Vg~viv-~~g~ii~~g~~~--~~G~~HAE~~al~~~~---~~~~~atlyvt 75 (364) +...+...|+.|...... ...-|= +|||++. +||+|+ .|... ...+.+||..||-++- +....+.+-|+ T Consensus 27 L~~~~~el~~~A~a~~~~---~PyS~f~~VGAAllt~dG~I~-tG~NVEN~s~glCAEr~Ai~~a~~~G~~~i~~iv~V~ 102 (158) T 3oj6_A 27 LSAAGQNLIDTATSVING---IPVSDFYSVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAIA 102 (158) T ss_dssp CCHHHHHHHHHHHHHHHT---SCCCSSSCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHCC---CCCCCCCEEEEEEEECCCCEE-EEECCCCCCCCCCCCEEEEEEEHHCCCCCEEEEEEEE T ss_conf 569999999999998715---997789628999993899999-9771048886654253334541022885368999997 Q ss_pred ------CCCCCCCCCCCHHHHHHHHCC Q ss_conf ------573211575210555653013 Q gi|254780348|r 76 ------LEPCSHYGRSPPCAQFIIECG 96 (364) Q Consensus 76 ------LEPC~h~GktppC~~~ii~~g 96 (364) +-|| +.|-+.|.+.+ T Consensus 103 ~~~~~~~sPC------G~CRQ~L~Ef~ 123 (158) T 3oj6_A 103 NEGRGILSPC------GRCRQVLADLH 123 (158) T ss_dssp TTTTEEECCC------HHHHHHHHHHS T ss_pred CCCCCCCCCC------HHHHHHHHHHC T ss_conf 7998213886------88999999968 No 55 >1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Probab=94.98 E-value=0.15 Score=29.23 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=57.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCC------CCCCHHHHHHHHHH---CCHHCCCEEEEECCC Q ss_conf 9999999999870882188896479998-6998999984388------76984899999973---001069889990573 Q gi|254780348|r 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAY------GGCPHAEVQALEEA---GEEARGATAYVTLEP 78 (364) Q Consensus 9 ~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~------~G~~HAE~~al~~~---~~~~~~atlyvtLEP 78 (364) ..+...+.+|......-.-|=.|||++. ++|+|. .|.... .-+-|||..|+.+| |++. -.++.|+.-| T Consensus 51 ~l~~~llp~A~~~A~aPyS~F~VGAa~~~~sG~iy-~G~NvE~~nas~~~ticAEq~Ai~~A~~~Ge~~-i~~i~v~~sP 128 (294) T 1ctt_A 51 ALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEKA-LAAITVNYTP 128 (294) T ss_dssp HHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCCC-EEEEEESSCC T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEEECCC T ss_conf 99998899999625198789937899994899899-976034578888875458999999998748973-6999997898 Q ss_pred CCCCCCCCHHHHHHHHCC Q ss_conf 211575210555653013 Q gi|254780348|r 79 CSHYGRSPPCAQFIIECG 96 (364) Q Consensus 79 C~h~GktppC~~~ii~~g 96 (364) |-| |-+.|.+.. T Consensus 129 CG~------CRQ~l~E~~ 140 (294) T 1ctt_A 129 CGH------CRQFMNELN 140 (294) T ss_dssp CHH------HHHHHTTBT T ss_pred CHH------HHHHHHHHC T ss_conf 388------899998614 No 56 >3ir2_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrolase, metal-binding, zinc, alternative splicing, cytoplasm; HET: DNA; 2.25A {Homo sapiens} PDB: 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Probab=94.24 E-value=0.099 Score=30.52 Aligned_cols=94 Identities=21% Similarity=0.257 Sum_probs=61.6 Q ss_pred CCHHHHHHHHHHCCH---H-C--CCEEEEECCCCCCCCCCCHHHHHHHHC-----CCCEEEEECC--CCCCCCCCCCCCC Q ss_conf 984899999973001---0-6--988999057321157521055565301-----3432466301--0121101243311 Q gi|254780348|r 52 CPHAEVQALEEAGEE---A-R--GATAYVTLEPCSHYGRSPPCAQFIIEC-----GIRRVVVCVD--DPDVRVSGRGLQW 118 (364) Q Consensus 52 ~~HAE~~al~~~~~~---~-~--~atlyvtLEPC~h~GktppC~~~ii~~-----gIk~Vvi~~~--DPnp~v~gkGi~~ 118 (364) +-|||+.-|...... + . .-|.|+|=-||. .|++.|.+. .++-.++++. +..|+ .-.|... T Consensus 78 ~~HAE~~Fl~~i~~~~ld~~~~Y~VTwy~SwSPC~------~CA~~va~FL~~~~~v~L~If~sRLY~~~~~-~q~gLr~ 150 (207) T 3ir2_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCF------SCAQEMAKFISKNKHVSLCIKTARIYDDQGR-AQEGLRT 150 (207) T ss_dssp CCCHHHHHHHHGGGGCCCTTSCEEEEEEEEECCCH------HHHHHHHHHHHHCTTEEEEEEEEECCCCSSS-HHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHH------HHHHHHHHHHHHCCCEEEEEEHHHHCCCCHH-HHHHHHH T ss_conf 73489999998756167945437898877369739------9999999999768991798777652534607-8999999 Q ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHH Q ss_conf 001898896222101232001222201134222011 Q gi|254780348|r 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 (364) Q Consensus 119 L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~l 154 (364) |.++|+.|..+--+|...-=+-|.. ..++||.-. T Consensus 151 L~~aG~~v~iM~~~eF~~CW~nFV~--~~~~~F~PW 184 (207) T 3ir2_A 151 LAEAGAKISIMTYSEFKHCWDTFVD--HQGAPFQPW 184 (207) T ss_dssp HHHTTCEEEECCHHHHHHHHHHHBC--CTTCCCCCC T ss_pred HHHCCCCEEEECHHHHHHHHHHHHH--CCCCCCCCH T ss_conf 9987997896181888999999870--899988876 No 57 >3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural genomics, protein structure initiative; 2.10A {Bacillus halodurans} Probab=79.59 E-value=1.1 Score=23.56 Aligned_cols=175 Identities=13% Similarity=0.140 Sum_probs=78.3 Q ss_pred CCCEEEEECCCCCCCCCCC---CCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC Q ss_conf 3432466301012110124---3311001898896222101232001222201134222011010278772021136532 Q gi|254780348|r 96 GIRRVVVCVDDPDVRVSGR---GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 (364) Q Consensus 96 gIk~Vvi~~~DPnp~v~gk---Gi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~ 172 (364) .=|||++|..----. ..+ =++.|+++|.+|..++.+.+..+...|.... .|. . .+..-.+... T Consensus 6 ~gK~I~lgITGs~a~-~~~~l~li~~L~~~g~~V~vI~S~~A~~~vt~~~~~~----~~~-----~----~~~~lt~~~v 71 (201) T 3lqk_A 6 AGKHVGFGLTGSHCT-YHEVLPQMERLVELGAKVTPFVTHTVQTTDTKFGESS----EWI-----N----KIKQITEEPI 71 (201) T ss_dssp TTCEEEEECCSCGGG-GGGTHHHHHHHHHTTCEEEEECSSCSCCTTCCTTCSC----HHH-----H----HHHHHCCSCC T ss_pred CCCEEEEEECCHHHH-HHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHH----HHH-----H----HHHHHHCCCC T ss_conf 899899997585999-9999999999998899699997742886633400178----888-----8----9999969996 Q ss_pred CCCCHHHHHHHH-HHHHCCCCEEEE---HHHH------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH-HHCCCCC Q ss_conf 222101356667-642014403663---1220------1345423544344443442157644668998022-1003444 Q gi|254780348|r 173 PITGFISKNQVH-LLRAQSDAILVG---IGTV------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTAL 241 (364) Q Consensus 173 wIT~~~sr~~vh-~lRa~~DaIlvG---~~Tv------~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~-~l~~~~~ 241 (364) | +.... --| .++..+|+++|= +||+ +.||+-..+=..-+....|+.++...+-..-.+. ++.+-.. T Consensus 72 ~-~~~~~--~~~i~~~~~aD~mvIaPaSanTlAKiA~GiaDnLlt~aa~~~Lk~~~plviapamn~~m~~~~~Ni~~L~~ 148 (201) T 3lqk_A 72 V-DSMVK--AEPFGPKTPLDCMVIAPMTGNSTSKFANAMTDSPVLMGAKATLRNGKPVVVGISTNDALGLNGINIMRLMA 148 (201) T ss_dssp B-CSHHH--HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHT T ss_pred C-CCCCC--CHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH T ss_conf 5-77652--01432210238999910888799999754459899999999986599889997888678877999999996 Q ss_pred CCEEEEEC-CCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEC Q ss_conf 67079854-65542101100223222223332227889999860799699981 Q gi|254780348|r 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 (364) Q Consensus 242 ~~~~ii~~-~~~~~~~~~~~~~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVE 293 (364) ...+++.- ...++. .+.-..+..-..=+..+.+.|..+.++.+|+| T Consensus 149 ~~~~~~~P~~~~~~~------~~~~s~~a~~~~i~~~i~~aL~~~~iqp~~~~ 195 (201) T 3lqk_A 149 TKNIYFIPFGQDNPQ------VKPNSLVARMEALPETIEAALRGQQYQPVLIE 195 (201) T ss_dssp STTEEECCEEESCTT------TCTTCEEECGGGHHHHHHHHHTTCCCSCCBCC T ss_pred CCCEEEECCCCCCCC------CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 899999328987402------37775425287789999999708775669998 No 58 >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} Probab=72.57 E-value=1.6 Score=22.45 Aligned_cols=103 Identities=16% Similarity=0.136 Sum_probs=60.4 Q ss_pred CCCHHHHHHHHHHCCHHCCCEEEEE--------CCCCCCC--CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 6984899999973001069889990--------5732115--75210555653013432466301012110124331100 Q gi|254780348|r 51 GCPHAEVQALEEAGEEARGATAYVT--------LEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 (364) Q Consensus 51 G~~HAE~~al~~~~~~~~~atlyvt--------LEPC~h~--GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~ 120 (364) |+.||=..+|.+.+. -..+||. +..|... -....-.+.+.+.+|.=||+|..+| +++| =.+.|+ T Consensus 31 gREhAi~~~l~~s~~---~~~v~~~pgN~g~~~~~~~~~i~~~d~~~l~~~~~~~~iDlvvvGpE~p--L~~G-i~D~l~ 104 (442) T 3lp8_A 31 GREHSMLHHIRKSTL---LNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEKIELVVIGPETP--LMNG-LSDALT 104 (442) T ss_dssp HHHHHHHHHHTTCTT---EEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTTCCEEEECSHHH--HHTT-HHHHHH T ss_pred HHHHHHHHHHHHCCC---CCEEEEECCCHHHHHCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHHHH T ss_conf 899999999975989---8989997996788741821662778999999999982999999898389--8878-899997 Q ss_pred CCCCEEEECCCCH-----HHHHHHHHHHHCCCCCCHHHHHHCCCHH Q ss_conf 1898896222101-----2320012222011342220110102787 Q gi|254780348|r 121 QKGIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQD 161 (364) Q Consensus 121 ~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP~V~lK~A~SlD 161 (364) ++||.|-|.-.+. .+.+-+.|+. +.+-|--..+.+.+.+ T Consensus 105 ~~gi~vfGps~~~A~lE~sK~f~k~~m~--~~~IPta~~~~~~~~~ 148 (442) T 3lp8_A 105 EEGILVFGPSKAAARLESSKGFTKELCM--RYGIPTAKYGYFVDTN 148 (442) T ss_dssp HTTCEEESCCHHHHHHHHCHHHHHHHHH--HHTCCBCCEEEESSHH T ss_pred HCCCCEEECCHHHHHHHHCHHHHHHHHH--HHCCCCCCHHHCCCHH T ss_conf 4899478647889887536899999999--8688875100138899 No 59 >3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Probab=72.23 E-value=2 Score=21.65 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=78.1 Q ss_pred CCEEEEECCCCCCCCCCCC----CCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCC Q ss_conf 4324663010121101243----311001898896222101232001222201134222011010278772021136532 Q gi|254780348|r 97 IRRVVVCVDDPDVRVSGRG----LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 (364) Q Consensus 97 Ik~Vvi~~~DPnp~v~gkG----i~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~ 172 (364) =|||++|..-- ..+=++ ++.|++.|.+|..++.+.+..+...|........ .+....+... T Consensus 5 gKrI~lgiTGs--~aa~~~~~~li~~L~~~g~~V~vv~S~~A~~~it~~~~~~~~~~-------------~~~~l~~~~~ 69 (207) T 3mcu_A 5 GKRIGFGFTGS--HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQSTNTRFGEGAEWIK-------------KIEEITGFKA 69 (207) T ss_dssp TCEEEEEECSC--GGGGTTSHHHHHHHHHTTCEEEEEECC------------CHHHH-------------HHHHHSSSCC T ss_pred CCEEEEEECCH--HHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHHH-------------HHHHHCCCCC T ss_conf 99999997484--99999999999999988996999986569978538777665333-------------6767419843 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEE---EHHHH------CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH-HCCCCCC Q ss_conf 22210135666764201440366---31220------13454235443444434421576446689980221-0034446 Q gi|254780348|r 173 PITGFISKNQVHLLRAQSDAILV---GIGTV------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK-IIKTALL 242 (364) Q Consensus 173 wIT~~~sr~~vh~lRa~~DaIlv---G~~Tv------~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~-l~~~~~~ 242 (364) | ++... ..--.+..++|+++| .+||+ +.||+-+.+=..-.....|+.++..-+-..-.+.. +-+-... T Consensus 70 ~-~~~~~-~~~~~~s~~aD~mvIaPaTaNTlAKiA~GiaDnlvt~~a~~~L~~~~pvviaPamn~~m~~n~~n~~~l~~l 147 (207) T 3mcu_A 70 I-NSIVG-AEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVSTNDALGLNGVNLMRLMAT 147 (207) T ss_dssp B-CSHHH-HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEEETTTTTTTHHHHHHHHHB T ss_pred C-CCCCC-CCHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHCHHHHHHHHHC T ss_conf 4-68654-422121211189998347677999998244698888999999857996899969887787499999999982 Q ss_pred CEEE-EECCCCCCCHHHHCCCCCCCCCCCCCCC--HHHHHHHHHHCCCCEEEEC Q ss_conf 7079-8546554210110022322222333222--7889999860799699981 Q gi|254780348|r 243 APVI-IVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVE 293 (364) Q Consensus 243 ~~~i-i~~~~~~~~~~~~~~~~~v~vi~~~~~d--l~~iL~~L~~~gi~~iLVE 293 (364) +.+. +......... +.. .+ ....| ...+++.|..++++-+|+| T Consensus 148 ~~~~~vp~~p~~~~~----kp~--s~--~~~~~~i~~~v~~aL~~~~~qp~l~~ 193 (207) T 3mcu_A 148 KNIYFVPFGQDAPEK----KPN--SM--VARMELLEDTVLEALQGKQLQPVVVE 193 (207) T ss_dssp TTEEECCEEESCTTT----STT--CE--EECGGGHHHHHHHHHTTCCCSCCBCC T ss_pred CCCEEEECCCCCCCC----CCC--CC--CCCHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 898799889973012----877--56--55276699999999708674669999 No 60 >1vk9_A Conserved hypothetical protein TM1506; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3 Probab=70.99 E-value=5.2 Score=18.94 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=67.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCC Q ss_conf 99999999999987088218889647999869989999843887698489999997300106988999057321157521 Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 (364) Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~Gktp 86 (364) .+..|+.|+.+=..+ ..-||+. +|+.|-+ ++++.=.|== .|.+..+.++|+.+.-.. .||. T Consensus 14 ~~~lm~~a~~LL~e~--------~~S~vv~-~g~~i~t-s~~rGvkpL~---~Ll~~~~~L~ga~iADKV-----VGKa- 74 (151) T 1vk9_A 14 EKNLLRSALKIFEKK--------DLSLLAY-SGRSIFE-SKDSGLKPVV---ELFKRFDNLEGSLVIDKM-----VGKA- 74 (151) T ss_dssp CHHHHHHHHHHHHHT--------TCSEEEE-SSSEEEE-ECCSTTHHHH---HHHHHCSCCTTCEEEEEE-----ECHH- T ss_pred HHHHHHHHHHHHHHC--------CEEEEEE-CCCEEEE-ECCCCHHHHH---HHHHCCHHHCCCEEEHHH-----HHHH- T ss_conf 899999999999718--------8379996-5999986-3686827999---998271754688730247-----6399- Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 05556530134324663010121101243311001898896 Q gi|254780348|r 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364) Q Consensus 87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364) -+-+++..||+.|+-.. ++-.+.+.|+++||+|+ T Consensus 75 -AA~L~vlggv~eVyA~V------ISe~Al~lL~~~gI~vs 108 (151) T 1vk9_A 75 -AASFLLKMKPDHIHAKV------ISKPALKLMNEYGQSFS 108 (151) T ss_dssp -HHHHHHHHCCSEEEEEE------EEHHHHHHHHHTTCCEE T ss_pred -HHHHHHHCCEEEEEHHH------HCHHHHHHHHHCCCEEE T ss_conf -99999957971775335------16899999998596677 No 61 >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Probab=70.00 E-value=3.5 Score=20.05 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=13.6 Q ss_pred HHHCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf 5301343246630101211012433110 Q gi|254780348|r 92 IIECGIRRVVVCVDDPDVRVSGRGLQWL 119 (364) Q Consensus 92 ii~~gIk~Vvi~~~DPnp~v~gkGi~~L 119 (364) ..+.|+.-||+|+.++|-.+.-.-.+.| T Consensus 82 ~k~~G~dGvVfG~L~~dg~iD~~~~~~L 109 (256) T 1twd_A 82 VRELGFPGLVTGVLDVDGNVDMPRMEKI 109 (256) T ss_dssp HHHTTCSEEEECCBCTTSSBCHHHHHHH T ss_pred HHHCCCCEEEEEEECCCCCCCHHHHHHH T ss_conf 9985999678866889998499999999 No 62 >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Probab=67.86 E-value=5.2 Score=18.89 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=31.4 Q ss_pred ECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC---CCCCCCCCCCCCCCCCCEEE Q ss_conf 057321157521055565301343246630101---21101243311001898896 Q gi|254780348|r 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP---DVRVSGRGLQWLSQKGIIVD 127 (364) Q Consensus 75 tLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DP---np~v~gkGi~~L~~~GI~V~ 127 (364) ..++-.|+|...| +.+.+.|++-|++|+.+- ...+. .=++..+++|+++- T Consensus 66 ~~~~Ga~TG~is~--~~l~~~g~~~viigHsErR~~~~e~~-~~v~~a~~~gl~~I 118 (226) T 1w0m_A 66 VEAGGAHTAHVSL--ENIKEAGGSGVILNHSEAPLKLNDLA-RLVAKAKSLGLDVV 118 (226) T ss_dssp BSSCSSCTTCCBH--HHHHHHTCCEEEECCTTSCCBHHHHH-HHHHHHHHTTCEEE T ss_pred CCCCCCCCCHHHH--HHHHHCCCCEEEECCHHHHHHHCHHH-HHHHHHHHCCCEEE T ss_conf 8789887066569--99987599799974368776510068-99999998899899 No 63 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=62.02 E-value=7.7 Score=17.78 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=55.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHH Q ss_conf 99999999870882188896479998699899998438876984899999973001069889990573211575210555 Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 (364) Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~ 90 (364) +..|+++.+. .+.| .|||+|.+.--|.+...- ..-|-..|+.--...+.|..+=++ .|| +..+++ T Consensus 216 adaA~~lv~e-----f~~p--a~aIiKH~NPCGvA~~~~--~~~Ay~~A~~~Dp~SAFGGIVA~N-~~v-----d~~~A~ 280 (464) T 1zcz_A 216 AENAWFMAKN-----LPRM--GAVVVKHQSPCGAAIGED--KVEIVKKAIEADDESSFGGILAVN-FEM-----DEEVAK 280 (464) T ss_dssp HHHHHHHHHT-----CSSS--EEEEEETTEEEEEEECSC--HHHHHHHHHHHTTTTTTTEEEEES-SCB-----CHHHHH T ss_pred HHHHHHHHHC-----CCCC--CEEEECCCCCCCCCCCCC--CCHHHHHHHHCCCCCCCCEEEEEC-CCH-----HHHHHH T ss_conf 8999864331-----3677--248862577654532344--016784050069955446089977-712-----689999 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE Q ss_conf 653013432466301012110124331100189889 Q gi|254780348|r 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 (364) Q Consensus 91 ~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V 126 (364) +| +. .-+|||+- ...-..+++|++..+.+ T Consensus 281 ~I-~~-F~EvIIAP-----~f~~eALeiL~kKk~~~ 309 (464) T 1zcz_A 281 SL-KK-YLEVIVAP-----SFTQEAIEVLSKKKVRL 309 (464) T ss_dssp HC-CS-CEEEEECS-----CBCHHHHHHHTTSSCEE T ss_pred HH-HH-CEEEEECC-----CCCHHHHHHHHHCCCHH T ss_conf 97-64-34999828-----98989999986017201 No 64 >2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} Probab=61.55 E-value=3.2 Score=20.30 Aligned_cols=79 Identities=28% Similarity=0.228 Sum_probs=48.7 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEE--------ECCCCCCCCCCCHH----HHHHHHCCCCEEEEECCCCC Q ss_conf 9999843887698489999997300106988999--------05732115752105----55653013432466301012 Q gi|254780348|r 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV--------TLEPCSHYGRSPPC----AQFIIECGIRRVVVCVDDPD 108 (364) Q Consensus 41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyv--------tLEPC~h~GktppC----~~~ii~~gIk~Vvi~~~DPn 108 (364) |||-| |+.||=..+|.+.+. -..+|| +++-|.-..-.+.. .+.+.+.+|.-||+|-.+| T Consensus 29 viGsG-----gREhAia~~l~~s~~---~~~v~~~pgN~g~~~~~~~~~~~i~~~d~~~i~~~~~~~~iDlvivGpE~p- 99 (452) T 2qk4_A 29 IIGSG-----GREHTLAWKLAQSHH---VKQVLVAPGNAGTACSEKISNTAISISDHTALAQFCKEKKIEFVVVGPEAP- 99 (452) T ss_dssp EEECS-----HHHHHHHHHHTTCTT---EEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHHHHHHHTCCEEEECSSHH- T ss_pred EECCC-----HHHHHHHHHHHHCCC---CCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHH- T ss_conf 99978-----899999999985989---888999789879850043123465867999999999985999999897389- Q ss_pred CCCCCCCCCCCCCCCCEEEECC Q ss_conf 1101243311001898896222 Q gi|254780348|r 109 VRVSGRGLQWLSQKGIIVDRMM 130 (364) Q Consensus 109 p~v~gkGi~~L~~~GI~V~~~~ 130 (364) ++.| =.+.|+++||.|-|-- T Consensus 100 -L~~G-l~D~l~~~gi~vfGps 119 (452) T 2qk4_A 100 -LAAG-IVGNLRSAGVQCFGPT 119 (452) T ss_dssp -HHTT-HHHHHHHTTCCEESCC T ss_pred -HHHH-HHHHHHHCCCCEECCH T ss_conf -8988-9999986799443550 No 65 >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Probab=58.28 E-value=3.6 Score=19.99 Aligned_cols=31 Identities=29% Similarity=0.551 Sum_probs=16.7 Q ss_pred CHHHHHHHHHHHHCCCCEEEEHHHHCCCCCC Q ss_conf 1013566676420144036631220134542 Q gi|254780348|r 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 (364) Q Consensus 176 ~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~ 206 (364) |-.+..++..+|+-+||+|||..=+..+||. T Consensus 210 GI~s~~d~~~l~~G~davLIGesLm~~~dp~ 240 (251) T 1i4n_A 210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPR 240 (251) T ss_dssp CCCCGGGHHHHTTTCSEEEECHHHHHCSSHH T ss_pred CCCCHHHHHHHHHCCCEEEECHHHHCCCCHH T ss_conf 9999999999982899999886875799999 No 66 >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Probab=57.79 E-value=8.4 Score=17.52 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=12.2 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCC Q ss_conf 732115752105556530134324663010 Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 (364) Q Consensus 77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~D 106 (364) ++-+++|... .+.+.+.|++.|++|+.+ T Consensus 71 ~~Ga~TGeis--~~~l~~~G~~~vliGHSE 98 (225) T 1hg3_A 71 KPGSHTGHVL--PEAVKEAGAVGTLLNHSE 98 (225) T ss_dssp CSBSCTTCCC--HHHHHHTTCCEEEESCGG T ss_pred CCCCCCCHHH--HHHHHHCCCCEEEECCCC T ss_conf 7886036422--899975598889964743 No 67 >2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A Probab=55.23 E-value=6.1 Score=18.45 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=57.5 Q ss_pred CCCHHHHHHHHHHCCHHCCCEEEE--------ECCCCCCCCCC--CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC Q ss_conf 698489999997300106988999--------05732115752--10555653013432466301012110124331100 Q gi|254780348|r 51 GCPHAEVQALEEAGEEARGATAYV--------TLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 (364) Q Consensus 51 G~~HAE~~al~~~~~~~~~atlyv--------tLEPC~h~Gkt--ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~ 120 (364) |+.||=..+|.+.+.. ..+|| .+..|....-+ ..=.+...+.+|.-||+|..+| +++| =.+.|+ T Consensus 31 grEhAia~~l~~s~~~---~~v~~~pgN~g~~~~~~~~~i~~~d~~~i~~~~~~~~iD~vvvGpE~p--L~~g-l~D~l~ 104 (451) T 2yrx_A 31 GREHAIAWKAAQSPLV---GKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIVGPEAP--LASG-IVDRFM 104 (451) T ss_dssp HHHHHHHHHHHTCTTE---EEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEECSHHH--HHTT-HHHHHH T ss_pred HHHHHHHHHHHHCCCC---CEEEEECCCHHHHHHCEEEECCCCCHHHHHHHHHHHCCCEEEECCCHH--HHHH-HHHHHH T ss_conf 8999999999749898---989997898799851704624868999999999983999999897578--8889-999995 Q ss_pred CCCCEEEECCCCHHH-HHHHHHHH--HCCCCCCHHHHHHCCCHHH Q ss_conf 189889622210123-20012222--0113422201101027877 Q gi|254780348|r 121 QKGIIVDRMMESEGK-IFLHAYLT--RQVEKRSHITLKIAVSQDN 162 (364) Q Consensus 121 ~~GI~V~~~~~~~~~-~ln~~f~~--~~~~~rP~V~lK~A~SlDG 162 (364) ++||.|-|--.+.++ +-.+.|.. ..+.+-|-...+.+.|.+- T Consensus 105 ~~gi~v~Gp~~~aa~lE~sK~faK~~m~~~~IPta~~~~~~~~~e 149 (451) T 2yrx_A 105 AEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHAAFTSYEE 149 (451) T ss_dssp HTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEESCHHH T ss_pred HCCCCEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECHHH T ss_conf 069940077899999875779899999972979878389978999 No 68 >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Probab=50.83 E-value=7.4 Score=17.90 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=31.2 Q ss_pred CCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHH-HCC---HHCCCEEEEE-CCCCCCCC Q ss_conf 18889647999869989999843887698489999997-300---1069889990-57321157 Q gi|254780348|r 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE---EARGATAYVT-LEPCSHYG 83 (364) Q Consensus 25 t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~-~~~---~~~~atlyvt-LEPC~h~G 83 (364) +.+.|.+++|+++||+|+..| +.+|+.++.. +|. +++|.++.== -.+-+|+. T Consensus 49 ~~~~~~~~av~I~~g~I~~vG-------~~~~~~~~~~~~gaeVIDa~G~~V~PGfID~H~H~~ 105 (534) T 3icj_A 49 FSPVKKVSGLVISNERVLYAG-------DSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLD 105 (534) T ss_dssp ETTEEEESEEEEETTEEEEEE-------CHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHH T ss_pred CCCCCEEEEEEEECCEEEEEC-------CCHHHHHHCCCCCCEEEECCCCEEECCCEEHHHCHH T ss_conf 999866708999999999988-------808989746899998998999999226350513934 No 69 >2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A Probab=50.29 E-value=7 Score=18.06 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=60.3 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCC----CCC--------CCCHHHHHHHHCCCCEEEEECCCCC Q ss_conf 9999843887698489999997300106988999057321----157--------5210555653013432466301012 Q gi|254780348|r 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS----HYG--------RSPPCAQFIIECGIRRVVVCVDDPD 108 (364) Q Consensus 41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~----h~G--------ktppC~~~ii~~gIk~Vvi~~~DPn 108 (364) |||-| |+.||=..||.+.+ ....+||. |.+ +.. ...--.+.+.+.+|.-|++|..+| T Consensus 5 iiG~G-----grEha~~~~l~~~~---~~~~~~~~--~~N~g~~~~~~~~~~~~~d~~~i~~~~~~~~id~vi~g~e~~- 73 (424) T 2yw2_A 5 VVGNG-----GREHAIAWKVAQSP---LVKELYVA--KGNAGIWEIAKRVDISPTDVEKLAEFAKNEGVDFTIVGPEAP- 73 (424) T ss_dssp EEESS-----HHHHHHHHHHTTCT---TCSEEEEE--ECCTTGGGTSEEECSCTTCHHHHHHHHHHHTCSEEEECSHHH- T ss_pred EECCC-----HHHHHHHHHHHHCC---CCCEEEEE--CCCHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEEECCCHH- T ss_conf 98958-----99999999998589---98889998--898889854300862889999999999996999999898478- Q ss_pred CCCCCCCCCCCCCCCCEEEECCCC-----HHHHHHHHHHHHCCCCCCHHHHHHCCCHHH Q ss_conf 110124331100189889622210-----123200122220113422201101027877 Q gi|254780348|r 109 VRVSGRGLQWLSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 (364) Q Consensus 109 p~v~gkGi~~L~~~GI~V~~~~~~-----~~~~ln~~f~~~~~~~rP~V~lK~A~SlDG 162 (364) .++| =.+.|+++||.|-|.-.+ ..+.+.+.|+. +.+-|-...+.+.|.|- T Consensus 74 -l~~~-~a~~l~~~gi~~~gp~~~~~~~~~~K~~~k~~~~--~~gipt~~~~~~~~~~e 128 (424) T 2yw2_A 74 -LVEG-IVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMK--KYGIPTARYEVFTDFEK 128 (424) T ss_dssp -HHTT-HHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHH--HTTCCBCCEEEESCHHH T ss_pred -HHHH-HHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHH--HCCCCCCCCCCCCCHHH T ss_conf -8888-9999986798313848999999868899999999--84989634445561999 No 70 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=50.23 E-value=5.4 Score=18.79 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=22.1 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC Q ss_conf 2101356667642014403663122013 Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364) Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364) +++.+....+.+|.+++-+++|++||+. T Consensus 60 ~tp~a~e~i~~l~~~~p~~~iGaGTV~~ 87 (225) T 1mxs_A 60 RSQHGLKAIQVLREQRPELCVGAGTVLD 87 (225) T ss_dssp SSTHHHHHHHHHHHHCTTSEEEEECCCS T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9940999999999749970786530367 No 71 >2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, RNA-binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix K1} SCOP: c.51.1.2 Probab=48.14 E-value=13 Score=16.30 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=8.0 Q ss_pred CHHHHHHHHHHCCCCEEEE Q ss_conf 2788999986079969998 Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLV 292 (364) Q Consensus 274 dl~~iL~~L~~~gi~~iLV 292 (364) .++++++...++|+++|+| T Consensus 71 ~lkei~~~A~~~g~T~liI 89 (217) T 2cxh_A 71 SMEELAREAIIRGADRIVV 89 (217) T ss_dssp CHHHHHHHHHHTTEEEEEE T ss_pred CHHHHHHHHHHCCCCEEEE T ss_conf 2999999998779988999 No 72 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=48.06 E-value=5.9 Score=18.54 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=56.7 Q ss_pred CCCHHHHHHHHHHCCHHCCCEEEEE-------CC-CCCCCCCCC----HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 6984899999973001069889990-------57-321157521----05556530134324663010121101243311 Q gi|254780348|r 51 GCPHAEVQALEEAGEEARGATAYVT-------LE-PCSHYGRSP----PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 (364) Q Consensus 51 G~~HAE~~al~~~~~~~~~atlyvt-------LE-PC~h~Gktp----pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~ 118 (364) |+.||=+.+|.+. .+..++||. ++ -|.+.--.+ .=.+...+.+|.=||||-.+| +++| =.+. T Consensus 13 gREhAia~~l~~s---~~~~~v~~~pgN~g~~~~~~~~~~~~~~~d~~~i~~~~~~~~idlvivgpe~p--L~~G-l~D~ 86 (431) T 3mjf_A 13 GREHALGWKAAQS---PLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQSHDIGLTIVGPEAP--LVIG-VVDA 86 (431) T ss_dssp HHHHHHHHHHTTC---TTEEEEEEEECCHHHHHCTTCEECCCCTTCHHHHHHHHHHTTEEEEEECSHHH--HHTT-HHHH T ss_pred HHHHHHHHHHHHC---CCCCEEEEECCCHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCEEEECCCHH--HHHH-HHHH T ss_conf 9999999999759---89897999689726653066545246866999999999982999899897489--8877-9999 Q ss_pred CCCCCCEEEECCCC-----HHHHHHHHHHHHCCCCCCHHHHHHCCCHH Q ss_conf 00189889622210-----12320012222011342220110102787 Q gi|254780348|r 119 LSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 (364) Q Consensus 119 L~~~GI~V~~~~~~-----~~~~ln~~f~~~~~~~rP~V~lK~A~SlD 161 (364) |+++||.|-|--.+ ..+.+-+.|+ .+++-|-...+...+.+ T Consensus 87 l~~~gi~vfGP~~~aA~lE~sK~fak~~m--~~~~IPta~~~~~~~~~ 132 (431) T 3mjf_A 87 FRAAGLAIFGPTQAAAQLEGSKAFTKDFL--ARHNIPSAEYQNFTDVE 132 (431) T ss_dssp HHHTTCCEESCCHHHHHHHHCHHHHHHHH--HHTTCSBCCEEEESCHH T ss_pred HHHCCCCEECCCHHHHHHHHHHHHHHHHH--HHCCCCCCCEEEECCHH T ss_conf 97479933387788878776199999998--75265887469958999 No 73 >2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} Probab=47.46 E-value=9.6 Score=17.13 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=12.7 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE Q ss_conf 55653013432466301012110124331100189889 Q gi|254780348|r 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 (364) Q Consensus 89 ~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V 126 (364) ++.+...|+.-|+++...|+ ..+.|+++||+| T Consensus 56 ~~~l~~~gv~~vi~~~iG~~------a~~~l~~~GI~v 87 (121) T 2yx6_A 56 PNFIKDHGAKIVLTYGIGRR------AIEYFNSLGISV 87 (121) T ss_dssp HHHHHHTTCCEEECSBCCHH------HHHHHHHTTCEE T ss_pred HHHHHHCCCCEEEECCCCHH------HHHHHHHCCCEE T ss_conf 89998769989998867988------999999879999 No 74 >1o13_A Probable NIFB protein; structural genomics, TM1816, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A Probab=46.36 E-value=10 Score=17.00 Aligned_cols=11 Identities=9% Similarity=0.003 Sum_probs=3.5 Q ss_pred HHHHHHHHHCC Q ss_conf 89999999788 Q gi|254780348|r 296 AAVAHSFINSR 306 (364) Q Consensus 296 ~~l~~sfl~~~ 306 (364) +.....|.+.| T Consensus 87 ~~a~~~L~~~G 97 (136) T 1o13_A 87 RRAIAAFEAMG 97 (136) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHCC T ss_conf 88999999879 No 75 >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* Probab=46.26 E-value=5.2 Score=18.93 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=51.6 Q ss_pred CCCCCCEE--EECCCCHHHH-HHHHHHHHCCCCCCHHHHHHCCCHHHHCCCC-CCCCCCC--CCHHHHHHHHHHHHCCCC Q ss_conf 00189889--6222101232-0012222011342220110102787720211-3653222--210135666764201440 Q gi|254780348|r 119 LSQKGIIV--DRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPI--TGFISKNQVHLLRAQSDA 192 (364) Q Consensus 119 L~~~GI~V--~~~~~~~~~~-ln~~f~~~~~~~rP~V~lK~A~SlDGkIa~~-~g~s~wI--T~~~sr~~vh~lRa~~Da 192 (364) -++-|.++ +.--++|... +..+--.---++|..-|+.+-...--+++.. ..+..+| ||-.++.++..+++..|| T Consensus 153 a~~lgl~~LvEvh~~~el~~a~~~~a~iiGINnRdL~t~~~d~~~~~~l~~~ip~~~~~vseSGI~~~~d~~~~~~g~~~ 232 (452) T 1pii_A 153 AHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFANG 232 (452) T ss_dssp HHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTTCSE T ss_pred HHHHCCCEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCEECHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCE T ss_conf 99848865999789999999982899989997988631508779999986107878679984799999999999817999 Q ss_pred EEEEHHHHCCCCCCCCCC Q ss_conf 366312201345423544 Q gi|254780348|r 193 ILVGIGTVLADDPELTCR 210 (364) Q Consensus 193 IlvG~~Tv~~DnP~Lt~R 210 (364) +|||..=+..+||...+| T Consensus 233 ~LiG~~lm~~~~~~~~~~ 250 (452) T 1pii_A 233 FLIGSALMAHDDLHAAVR 250 (452) T ss_dssp EEECHHHHTCSCHHHHHH T ss_pred EEECHHHCCCCCHHHHHH T ss_conf 998956438999999999 No 76 >2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} Probab=44.93 E-value=6.7 Score=18.16 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=60.6 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEE--------CCCCCC-CCCCCHHHHHHHHCCCCEEEEECCCCCCCC Q ss_conf 99998438876984899999973001069889990--------573211-575210555653013432466301012110 Q gi|254780348|r 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT--------LEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 (364) Q Consensus 41 ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvt--------LEPC~h-~GktppC~~~ii~~gIk~Vvi~~~DPnp~v 111 (364) |||-| |+.||=..+|.+.+. -.++||. +-.|.- ........+...+.+|.-||+|..+| ++ T Consensus 5 viGsG-----grEhAia~~l~~~~~---~~~v~~~pgN~g~~~~~~~~~~~~d~~~i~~~~~~~~idlvivGpE~p--L~ 74 (417) T 2ip4_A 5 VVGSG-----GREHALLWKAAQSPR---VKRLYAAPGNAGMEALAELVPWNGDVEALADWALAEGIDLTLVGPEAP--LV 74 (417) T ss_dssp EEESS-----HHHHHHHHHHHTCSS---CCEEEEEECCTTGGGTSEECCCCSCHHHHHHHHHHHTCCEEEECSSHH--HH T ss_pred EECCC-----HHHHHHHHHHHHCCC---CCEEEEECCCHHHHHHCEEECCCCCHHHHHHHHHHHCCCEEEECCCHH--HH T ss_conf 98978-----999999999972999---898999689767775174215668999999999985999999897478--88 Q ss_pred CCCCCCCCCCCCCEEEECCCCH-----HHHHHHHHHHHCCCCCCHHHHHHCCCHH Q ss_conf 1243311001898896222101-----2320012222011342220110102787 Q gi|254780348|r 112 SGRGLQWLSQKGIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQD 161 (364) Q Consensus 112 ~gkGi~~L~~~GI~V~~~~~~~-----~~~ln~~f~~~~~~~rP~V~lK~A~SlD 161 (364) .| =.+.|+++||.|-|--.+. .+.+.+.|+. +.+-|--..+.+.|.+ T Consensus 75 ~g-l~d~l~~~gi~v~Gp~~~~a~le~sK~~~k~~m~--~~gIpt~~~~~~~~~~ 126 (417) T 2ip4_A 75 EG-IADAFQARGLLLFGPTQKAAMIEGSKAFAKGLME--RYGIPTARYRVFREPL 126 (417) T ss_dssp TT-HHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHH--HTCCCBCCEEEESSHH T ss_pred HH-HHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHH--HHCCCCCCCEEEECHH T ss_conf 78-8999985799765870778887767899999999--8198988854993589 No 77 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=44.28 E-value=8 Score=17.65 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=22.3 Q ss_pred CCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEEE Q ss_conf 2278899998607996999812------3899999997889889999960 Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYRS 316 (364) Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifia 316 (364) ..+-..-+.|.++|..+|.+=+ |+ +...|.+.-+|+++.+=+ T Consensus 231 gTl~~aa~~Lk~~GA~~V~~~~THglfs~~--A~~~l~~s~i~~iv~TnT 278 (317) T 1dku_A 231 GTITLAANALVENGAKEVYACCTHPVLSGP--AVERINNSTIKELVVTNS 278 (317) T ss_dssp HHHHHHHHHHHHTTCSEEEEECSEECCCTT--HHHHHHTSSEEEEEEETT T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCH--HHHHHHCCCCCEEEECCC T ss_conf 019999999997699778999653434837--999986079988998589 No 78 >3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} Probab=43.96 E-value=7.8 Score=17.73 Aligned_cols=122 Identities=15% Similarity=0.138 Sum_probs=56.3 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCC-------EEEE Q ss_conf 210135666764201440366312201345423544344443442157644668998022100344467-------0798 Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-------PVII 247 (364) Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~-------~~ii 247 (364) +++.+......+|.++.-+++|++||+.-+- ++. ....=..+++++..+-. +++..... ..++ T Consensus 47 ~~~~a~~~i~~l~~~~p~~~vGaGTV~~~~~---~~~---a~~aGA~FivsP~~~~~----v~~~a~~~~ip~~~~~~~i 116 (217) T 3lab_A 47 RTEAGLAAISAIKKAVPEAIVGAGTVCTADD---FQK---AIDAGAQFIVSPGLTPE----LIEKAKQVKLDGQWQGVFL 116 (217) T ss_dssp TSTTHHHHHHHHHHHCTTSEEEEECCCSHHH---HHH---HHHHTCSEEEESSCCHH----HHHHHHHHHHHCSCCCEEE T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCHHH---HHH---HHHHCCCEEECCCCCHH----HHHHHHHCCCCCCCCCCCC T ss_conf 9906999999999868997599996242799---999---99727888776889999----9999998498644575452 Q ss_pred ECCCCCCCHHHHCCCCCCCC---CCCCCCCHHHHHHHHHH-CCCCEEEECCH--HHHHHHHHHCCC Q ss_conf 54655421011002232222---23332227889999860-79969998123--899999997889 Q gi|254780348|r 248 VTENDDPVLALAFRKKNINI---IYCDCRDLKKLLTILVG-RGVTSLLVEGG--AAVAHSFINSRL 307 (364) Q Consensus 248 ~~~~~~~~~~~~~~~~~v~v---i~~~~~dl~~iL~~L~~-~gi~~iLVEGG--~~l~~sfl~~~L 307 (364) - .-..+.........|.+. +..+.......++.|.. ..--.++--|| ..-+..||+++- T Consensus 117 P-G~~TptEi~~A~~~G~~~vK~FPA~~~gg~~~lk~l~~p~p~~~~~ptGGV~~~n~~~yl~~g~ 181 (217) T 3lab_A 117 P-GVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGLPN 181 (217) T ss_dssp E-EECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHSTT T ss_pred C-CCCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCC T ss_conf 7-8588679999997699959964011237899998620358998287337989899999996898 No 79 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=43.81 E-value=7 Score=18.04 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=19.4 Q ss_pred CHHHHHHHHHHCCCCEEEEC------CHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 27889999860799699981------23899999997889889999960 Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVE------GGAAVAHSFINSRLVDSIILYRS 316 (364) Q Consensus 274 dl~~iL~~L~~~gi~~iLVE------GG~~l~~sfl~~~LvDEl~ifia 316 (364) .+-..-+.|.++|..+|.+= .|+. -..|+...+|+++++=+ T Consensus 228 Tl~~aa~~Lk~~GA~~V~~~aTHglfs~~a--~e~l~~s~i~~ivvTnT 274 (326) T 2h06_A 228 TICHAADKLLSAGATRVYAILTHGIFSGPA--ISRINNACFEAVVVTNT 274 (326) T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEECCCTTH--HHHHHHSCEEEEEEETT T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHH--HHHHHCCCCCEEEECCC T ss_conf 799999999857998656886434458179--99986479988998688 No 80 >1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C Probab=42.02 E-value=7.9 Score=17.69 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHC-CCCEEEEECCCCCCCCCC Q ss_conf 521055565301-343246630101211012 Q gi|254780348|r 84 RSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG 113 (364) Q Consensus 84 ktppC~~~ii~~-gIk~Vvi~~~DPnp~v~g 113 (364) ||||-+..|.++ ||++ |+.+|+....| T Consensus 1 KtPP~s~llkkaagi~k---Gs~~p~~~~vG 28 (67) T 1qa6_A 1 KTPPAAVLLKKAAGIES---GSGEPNRNKVA 28 (67) T ss_dssp CCSCHHHHHHHHHTCSC---CCCTTSSCCCC T ss_pred CCCCHHHHHHHHHCCCC---CCCCCCCCCHH T ss_conf 98988999999978897---88999983220 No 81 >1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 1rbv_A 1rbt_A 1rbs_A 1kva_A 1kvb_A ... Probab=41.57 E-value=16 Score=15.63 Aligned_cols=44 Identities=23% Similarity=0.138 Sum_probs=25.7 Q ss_pred CCCCCCCCE---EEEEEECCEEE--EEEECCCCCCCHHHHHHHHHHCCHH Q ss_conf 821888964---79998699899--9984388769848999999730010 Q gi|254780348|r 23 GLTSTNPSV---ACLIVKDGIVI--GRGVTAYGGCPHAEVQALEEAGEEA 67 (364) Q Consensus 23 g~t~pNP~V---g~viv~~g~ii--~~g~~~~~G~~HAE~~al~~~~~~~ 67 (364) |.+.+||-. |+|++.+|... +.++.. ....-||..|+-.|-..+ T Consensus 11 GS~~~N~g~~G~G~vi~~~~~~~~~~~~~~~-~Tnn~aEl~Ai~~Al~~~ 59 (155) T 1jl1_A 11 GSALGNPGPGGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVALEAL 59 (155) T ss_dssp EEESSTTEEEEEEEEEEETTEEEEEEEEEEE-ECHHHHHHHHHHHHHHTC T ss_pred CCCCCCCCCEEEEEEEEECCEEEEEECCCCC-CCHHHHHHHHHHHHHHHH T ss_conf 6888999826999999989968999547686-657999999998777765 No 82 >1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1 Probab=40.11 E-value=15 Score=15.74 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=10.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 32222233322278899998607996999 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLL 291 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iL 291 (364) .+++++.+.... ...+..|.+.||.=+. T Consensus 64 ~~v~~vi~~~iG-~~~~~~L~~~GI~v~~ 91 (124) T 1eo1_A 64 NGVKAVIASSPG-PNAFEVLNELGIKIYR 91 (124) T ss_dssp TTCCEEEECCSS-HHHHHHHHHHTCEEEE T ss_pred CCCCEEEECCCC-HHHHHHHHHCCCEEEE T ss_conf 799899987669-8899999987999998 No 83 >3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Probab=39.99 E-value=13 Score=16.16 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=25.5 Q ss_pred CCHHHHHHHHHH-CCHHCCCEEEEECCCCCCCCCCCH Q ss_conf 984899999973-001069889990573211575210 Q gi|254780348|r 52 CPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPP 87 (364) Q Consensus 52 ~~HAE~~al~~~-~~~~~~atlyvtLEPC~h~Gktpp 87 (364) ..|+-...+++. .+...++-+.|-+|||.+..+++| T Consensus 58 eaH~i~~~ve~~l~~~~~~~~v~iHveP~~~~~~~~p 94 (94) T 3byp_A 58 EAHRLCDELERALAQAFPGLQATIHVEPEGERKRTNP 94 (94) T ss_dssp HHHHHHHHHHHHHHHHSTTEEEEEEEEECC------- T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCC T ss_conf 9999999999999965899779999898983532795 No 84 >2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Probab=39.91 E-value=9 Score=17.32 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=34.0 Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 105556530134324663010121101243311001898896 Q gi|254780348|r 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364) Q Consensus 86 ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364) ..+.+++-..|+||+.+.+-=| +.++.+..++|+++|++|. T Consensus 97 ~A~~~AL~~lg~krIav~TPY~-~~v~~~~~~~~~~~G~eVv 137 (223) T 2dgd_A 97 ESVYELLKKLNVRKLWIGTPYI-KERTLEEVEWWRNKGFEIV 137 (223) T ss_dssp HHHHHHHHHTTCCEEEEEESSC-HHHHHHHHHHHHTTTCEEE T ss_pred HHHHHHHHHCCCCEEEEECCCC-HHHHHHHHHHHHHCCEEEE T ss_conf 9999999972998079967886-5778999999996791375 No 85 >1rdu_A Conserved hypothetical protein; structure determination, structural proteomics, atnos, candid, joint center for structural genomics (JCSG); NMR {Thermotoga maritima} SCOP: c.55.5.1 Probab=39.81 E-value=17 Score=15.46 Aligned_cols=10 Identities=30% Similarity=0.425 Sum_probs=3.4 Q ss_pred CCCCCCCCEE Q ss_conf 1100189889 Q gi|254780348|r 117 QWLSQKGIIV 126 (364) Q Consensus 117 ~~L~~~GI~V 126 (364) ..|+++||+| T Consensus 77 ~~L~~~GI~v 86 (116) T 1rdu_A 77 ETLKAAGVKV 86 (116) T ss_dssp HHHHTTTCEE T ss_pred HHHHHCCCEE T ss_conf 9999889999 No 86 >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Probab=39.71 E-value=17 Score=15.45 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=15.2 Q ss_pred CCCCCEEEEEEECCEEEEEEE Q ss_conf 888964799986998999984 Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRGV 46 (364) Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g~ 46 (364) ...|.+++|.+++|+|++.|- T Consensus 18 ~~~~~~~~i~I~~g~I~~VG~ 38 (81) T 3ggm_A 18 PSQPEVSAIAITDGLITAVGG 38 (81) T ss_dssp TTCSEESEEEEETTEEEEEES T ss_pred CCCCEEEEEEEECCEEEEECC T ss_conf 997178499999999999768 No 87 >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II} Probab=38.18 E-value=8.1 Score=17.62 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=95.5 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHCCH--HCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC----- Q ss_conf 99998438876984899999973001--06988999057321157521055565301343246630101211012----- Q gi|254780348|r 41 VIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG----- 113 (364) Q Consensus 41 ii~~g~~~~~G~~HAE~~al~~~~~~--~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~g----- 113 (364) +|+--|-. .| ..+|+..+-+.=.+ ..+..+.|- |-.- --+.+.+.+.....+.+-+|+.|-...-.| T Consensus 27 ~IagNWKM-N~-~~~~~~~~~~~l~~~~~~~~~v~i~--Pp~~--~l~~~~~~l~~~~~~~i~lGAQnvs~~~~GAfTGE 100 (271) T 3krs_A 27 FVGGNFKC-NG-TKESLKTLIDSFKQVESSNSEVYVF--PTSL--HISLVKEFFGNDHPGVFKIGSQNISCTGNGAFTGE 100 (271) T ss_dssp EEEEECCB-CC-CHHHHHHHHHHHTTCCCCSSEEEEE--CCGG--GHHHHHHHHCSSSCSCEEECBSCCCSSCSBSCTTC T ss_pred EEEECCCC-CC-CHHHHHHHHHHHHCCCCCCCCEEEE--CCHH--HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC T ss_conf 78881222-68-9999999999976336689969998--9877--89999999841577513676232445679887452 Q ss_pred CCCCCCCCCCCEEEECCCCHHHHHH--------HHHHHHCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 4331100189889622210123200--------12222011342220110102787720211365322221013566676 Q gi|254780348|r 114 RGLQWLSQKGIIVDRMMESEGKIFL--------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 (364) Q Consensus 114 kGi~~L~~~GI~V~~~~~~~~~~ln--------~~f~~~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~ 185 (364) =+.+.|++.|++-.-+-..|-+.+. +-+......+.- +++-+..|++-+- . +........+ T Consensus 101 ISa~mLkd~G~~yvIIGHSERR~~f~Etd~~V~~Kv~~al~~gl~-pI~CIGEt~~er~---~-------g~~~~vv~~Q 169 (271) T 3krs_A 101 VSCEMLKDMDVDCSLVGHSERRQYYSETDQIVNNKVKKGLENGLK-IVLCIGESLSERE---T-------GKTNDVIQKQ 169 (271) T ss_dssp CCHHHHHHTTCCEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCE-EEEEECCCHHHHH---T-------TCHHHHHHHH T ss_pred CCHHHHHHHCCCEEEECCHHHCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCHHHHH---H-------HHHHHHHHHH T ss_conf 449999982789699645142024677789999999999873880-8999467067642---1-------3288899999 Q ss_pred HHHCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHH----CC Q ss_conf 42014403663122013454235443444434421576446689980221003444670798546554210110----02 Q gi|254780348|r 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FR 261 (364) Q Consensus 186 lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~----~~ 261 (364) ++.....+- +...+ .-.+-|+-.| ..++.+....+-.... +| ...... .. T Consensus 170 l~~~~~~~~--------~~~~i------iIAYEPvWAI--GTG~~as~~~i~~~~~----~I------r~~l~~~~~~~~ 223 (271) T 3krs_A 170 LTEALKDVS--------DLSNL------VIAYEPIWAI--GTGVVATPGQAQEAHA----FI------REYVTRMYNPQV 223 (271) T ss_dssp HHHHTTTCC--------CCTTE------EEEECCGGGS--SSSCCCCHHHHHHHHH----HH------HHHHHHHSCHHH T ss_pred HHHHHCCCC--------CHHCE------EEEECCEECC--CCCCCCCHHHHHHHHH----HH------HHHHHHHHCHHH T ss_conf 999860756--------50058------9983860014--7899999899999999----99------999999837312 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 2322222333222788999986079969998123899999997 Q gi|254780348|r 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..++.+++.++.+.+.+-+.+...++..+|| ||+.|-.+|++ T Consensus 224 a~~i~ILYGGSV~~~Na~~l~~~~~vDG~LV-GgASL~~~F~~ 265 (271) T 3krs_A 224 SSNLRIIYGGSVTPDNCNELIKCADIDGFLV-GGASLKPTFAK 265 (271) T ss_dssp HHHCCEEECSCCCTTTHHHHHHSTTCCEEEE-SGGGGSTTHHH T ss_pred CCCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH T ss_conf 2676488648889879999966889897885-10547989999 No 88 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=37.71 E-value=12 Score=16.53 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=21.4 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC Q ss_conf 2101356667642014403663122013 Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364) Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364) +++.+......+|.++.-+++|++||+. T Consensus 51 ~t~~a~~~i~~l~~~~p~~~vGaGTVl~ 78 (224) T 1vhc_A 51 RSEAAADAIRLLRANRPDFLIAAGTVLT 78 (224) T ss_dssp TSTTHHHHHHHHHHHCTTCEEEEESCCS T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9803999999999868991896202045 No 89 >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis} Probab=36.04 E-value=15 Score=15.75 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=6.6 Q ss_pred CHHHHHHHHHHHHCCCC Q ss_conf 10135666764201440 Q gi|254780348|r 176 GFISKNQVHLLRAQSDA 192 (364) Q Consensus 176 ~~~sr~~vh~lRa~~Da 192 (364) ++..|.+-++||.-+.- T Consensus 27 d~~d~ery~~l~~~~~~ 43 (206) T 3o8s_A 27 DVYDMERFEEIRQIAAE 43 (206) T ss_dssp ----------------- T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 87689999999999999 No 90 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=35.65 E-value=12 Score=16.51 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=27.1 Q ss_pred CCHHHHHHHHHHCCCCEEEEC-------CHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 227889999860799699981-------23899999997889889999960 Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVE-------GGAAVAHSFINSRLVDSIILYRS 316 (364) Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVE-------GG~~l~~sfl~~~LvDEl~ifia 316 (364) ..+...-+.|.++|.++|.+= +++ ..-|+...+|+++.+=+ T Consensus 286 gTl~~aa~~Lk~~GA~~V~~~~THgvfs~~A---~~~l~~s~i~~Iv~TnT 333 (379) T 2ji4_A 286 DSFLAAAETLKERGAYKIFVMATHGLLSSDA---PRRIEESAIDEVVVTNT 333 (379) T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEECCCTTH---HHHHHHSSCCEEEEESS T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHH---HHHHHHCCCCEEEECCC T ss_conf 6699999999976998379999797688169---99997289998998688 No 91 >1qgo_A CBIK protein, anaerobic cobalamine biosynthetic cobalt chelatase; vitamin B12, metal ION chelation, cobalt precorrin; 2.40A {Salmonella typhimurium LT2} SCOP: c.92.1.2 Probab=34.99 E-value=11 Score=16.76 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHCCCCEEEE Q ss_conf 2788999986079969998 Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLV 292 (364) Q Consensus 274 dl~~iL~~L~~~gi~~iLV 292 (364) ++.++++.|.+.|+.+|.| T Consensus 179 ~~~~~l~~l~~~g~~~v~v 197 (264) T 1qgo_A 179 EVDILIDSLRDEGVTGVHL 197 (264) T ss_dssp CHHHHHHHHHHHTCCEEEE T ss_pred CHHHHHHHHHHCCCCEEEE T ss_conf 8899999987457987999 No 92 >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Probab=34.84 E-value=13 Score=16.30 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=28.1 Q ss_pred CCCCCEEEEEEECCEEEEEE---------ECCCCC----CCHHHHHHHHHHCCHHCC Q ss_conf 88896479998699899998---------438876----984899999973001069 Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRG---------VTAYGG----CPHAEVQALEEAGEEARG 69 (364) Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g---------~~~~~G----~~HAE~~al~~~~~~~~~ 69 (364) .|+..|+|||.++|+++-.- |....| +...|..|++.+.+.. | T Consensus 6 ~P~v~V~~vi~~~~kvLlv~r~~~~~~~~w~~PgG~ie~gEs~~~aa~REv~EEt-G 61 (153) T 2b0v_A 6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEET-G 61 (153) T ss_dssp CCEEEEEEECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHH-S T ss_pred CCCEEEEEEEEECCEEEEEEEECCCCCCEEECCEEEECCCCCHHHHHHHHHHHHH-C T ss_conf 6874999999969999999984699999899982376699798999999999987-8 No 93 >3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1} Probab=33.82 E-value=17 Score=15.36 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=26.9 Q ss_pred CCCCCEEEEEEECCEEEEEEECC--------CCC----CCHHHHHHHHHHCCHH Q ss_conf 88896479998699899998438--------876----9848999999730010 Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRGVTA--------YGG----CPHAEVQALEEAGEEA 67 (364) Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g~~~--------~~G----~~HAE~~al~~~~~~~ 67 (364) .|+-.|+|||.++|+++-.-.+. ..| ....|.-|++...+.. T Consensus 3 ~P~v~v~~vi~~~gkvLlv~r~~~~~~~W~lPgG~ve~gEs~~~aa~RE~~EEt 56 (153) T 3dku_A 3 KPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEET 56 (153) T ss_dssp CCEEEEEEEEEETTEEEEEEEESSSCEEEECSEEECCTTCCHHHHHHHHHHHHH T ss_pred CCEEEEEEEEEECCEEEEEEECCCCCCCEECCEEEEECCCCHHHHHHHHHHHHH T ss_conf 985899999990999999997789998099977685189999999989999985 No 94 >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 2vfd_A 2vfe_A* Probab=33.61 E-value=11 Score=16.70 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=31.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 322222333222788999986079969998123899999997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++ T Consensus 202 ~~v~ILYGGSV~~~N~~~i~~~~~iDG~LV-GgASL~~~F~~ 242 (248) T 1o5x_A 202 NQIRILYGGSVNTENCSSLIQQEDIDGFLV-GNASLKESFVD 242 (248) T ss_dssp HHSEEEECSCCCTTTHHHHHTSTTCCEEEE-CGGGGSTTHHH T ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-ECHHCCHHHHH T ss_conf 774099668999879999856889896896-02308889999 No 95 >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A Probab=31.70 E-value=22 Score=14.70 Aligned_cols=42 Identities=31% Similarity=0.415 Sum_probs=31.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHH-HHHHHH Q ss_conf 2322222333222788999986079969998123899-999997 Q gi|254780348|r 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV-AHSFIN 304 (364) Q Consensus 262 ~~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l-~~sfl~ 304 (364) ..++.+++.++.+.+.+-+.+...++..+|| ||+.| ..+|++ T Consensus 204 ~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LV-G~aSl~~~~F~~ 246 (256) T 1aw2_A 204 AKNVVIQYGGSVKPENAAAYFAQPDIDGALV-GGAALDAKSFAA 246 (256) T ss_dssp HHHCEEEECSCCCTTTHHHHTTSTTCCEEEE-SGGGGCHHHHHH T ss_pred CCCCEEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH T ss_conf 1773099668889879999966899887996-268659899999 No 96 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Probab=31.34 E-value=17 Score=15.50 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=20.7 Q ss_pred CCHHHHHHHHHHHHCCCCEEEEHHHHCC Q ss_conf 2101356667642014403663122013 Q gi|254780348|r 175 TGFISKNQVHLLRAQSDAILVGIGTVLA 202 (364) Q Consensus 175 T~~~sr~~vh~lRa~~DaIlvG~~Tv~~ 202 (364) +++.+......++.++.-+++|++||+. T Consensus 50 ~tp~a~~~i~~l~~~~p~~~iGaGTV~~ 77 (214) T 1wbh_A 50 RTECAVDAIRAIAKEVPEAIVGAGTVLN 77 (214) T ss_dssp CSTTHHHHHHHHHHHCTTSEEEEESCCS T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 9867999999999878996795245453 No 97 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=31.03 E-value=18 Score=15.33 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=11.1 Q ss_pred HHHHHHHHHHCCCCEEEE Q ss_conf 788999986079969998 Q gi|254780348|r 275 LKKLLTILVGRGVTSLLV 292 (364) Q Consensus 275 l~~iL~~L~~~gi~~iLV 292 (364) ..+ ++.+.+.|+..+|| T Consensus 215 ~ed-~~~l~~~G~davLI 231 (247) T 1a53_A 215 RNE-IEELRKLGVNAFLI 231 (247) T ss_dssp HHH-HHHHHHTTCCEEEE T ss_pred HHH-HHHHHHCCCCEEEE T ss_conf 999-99999779999998 No 98 >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} Probab=31.01 E-value=17 Score=15.47 Aligned_cols=40 Identities=28% Similarity=0.496 Sum_probs=29.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH Q ss_conf 32222233322278899998607996999812389999999 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|+ T Consensus 198 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~eF~ 237 (244) T 2v5b_A 198 AQLRILYGGSVTAKNARTLYQMRDINGFLV-GGASLKPEFV 237 (244) T ss_dssp HHCEEEECSCCCHHHHHHHHTSTTCCEEEE-SGGGSSTTHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH T ss_conf 774189668888748999966889896895-2164588999 No 99 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=30.85 E-value=19 Score=15.10 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=19.2 Q ss_pred CCCC-CCHHHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCCCEE Q ss_conf 1575-21055565301343246630101211--0124331100189889 Q gi|254780348|r 81 HYGR-SPPCAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIV 126 (364) Q Consensus 81 h~Gk-tppC~~~ii~~gIk~Vvi~~~DPnp~--v~gkGi~~L~~~GI~V 126 (364) |+|. +..+.+.|-....+-+||++-..|.- -+-.=++.|++.||+| T Consensus 229 HHGS~~s~s~~fl~~v~P~~~viS~g~~n~~~hP~~~~l~~l~~~gi~~ 277 (547) T 2bib_A 229 HHDTNKSNTKDFIKNLSPSLIVQTSDSLPWKNGVDSEYVNWLKERGIER 277 (547) T ss_dssp TTBCSSSSCHHHHHHHCCSEEEESBSSCSBSSSBCHHHHHHHHTTTCEE T ss_pred CCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCEE T ss_conf 8898867679899754997999927877778898989999999879979 No 100 >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} Probab=30.80 E-value=17 Score=15.51 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=31.5 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 322222333222788999986079969998123899999997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++ T Consensus 201 ~~v~ILYGGSVn~~N~~~i~~~~~vDG~LV-G~ASL~~eF~~ 241 (259) T 2i9e_A 201 NSIRIQYGGSVTAANCKELASQPDIDGFLV-GGASLKPEFVD 241 (259) T ss_dssp HHCEEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH T ss_conf 666389738878748999956789886896-02657989999 No 101 >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 Probab=30.76 E-value=13 Score=16.20 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=30.8 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 322222333222788999986079969998123899999997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..+.+++.++.+...+-+.+...++..+|| ||+.|-..|++ T Consensus 221 ~~v~ILYGGSVn~~N~~~i~~~~~vDG~LV-GgASLd~eF~~ 261 (275) T 1mo0_A 221 DATRIIYGGSVTADNAAELGKKPDIDGFLV-GGASLKPDFVK 261 (275) T ss_dssp HHSCEEEESSCCTTTHHHHTTSTTCCEEEE-SGGGGSTHHHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH T ss_conf 855389568989879999956889886994-04756866999 No 102 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=30.72 E-value=11 Score=16.84 Aligned_cols=42 Identities=10% Similarity=0.223 Sum_probs=22.6 Q ss_pred CCCHHHHHHHHHHCCCCEEEECC------HHHHHHHHHHCCCCCEEEEEE Q ss_conf 22278899998607996999812------389999999788988999996 Q gi|254780348|r 272 CRDLKKLLTILVGRGVTSLLVEG------GAAVAHSFINSRLVDSIILYR 315 (364) Q Consensus 272 ~~dl~~iL~~L~~~gi~~iLVEG------G~~l~~sfl~~~LvDEl~ifi 315 (364) +..+...-+.|.++|..+|.+=. |+ -...+.++ .+||++.+= T Consensus 218 GgTl~~aa~~Lk~~GA~~V~~~~THgifs~~-a~~~l~~~-~i~~iv~Tn 265 (284) T 1u9y_A 218 GGTMATAVKLLKEQGAKKIIAACVHPVLIGD-ALNKLYSA-GVEEVVGTD 265 (284) T ss_dssp SHHHHHHHHHHHHTTCCSEEEEEEECCCCTT-HHHHHHHH-TCSEEEEET T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHC-CCCEEEECC T ss_conf 6779999999986699869999979738847-99999738-999899818 No 103 >2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} Probab=30.71 E-value=16 Score=15.62 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=30.6 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 322222333222788999986079969998123899999997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++ T Consensus 207 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~ef~~ 247 (257) T 2dp3_A 207 QHIRIIYGGSANGSNCEKLGQCPNIDGFLV-GGASLKPEFMT 247 (257) T ss_dssp HHSEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH T ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH T ss_conf 863099678889879999957889886995-01535966999 No 104 >1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2 Probab=29.83 E-value=22 Score=14.70 Aligned_cols=43 Identities=7% Similarity=-0.129 Sum_probs=27.6 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 732115752105556530134324663010121101243311001898896 Q gi|254780348|r 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364) Q Consensus 77 EPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364) .+|.+.++.++=.+ .-.|+.-|+++..-| +....|.++||+|- T Consensus 50 ~~~~~~~~~~~~~~--~l~gc~vVi~~~IG~------~a~~~L~~~GI~~i 92 (145) T 1p90_A 50 DVALAEDKNAWRVE--QIQDCQVLYVVSIGG------PAAAKVVRAGIHPL 92 (145) T ss_dssp GGGGCSSHHHHHHH--HTTTCSEEEESBCCH------HHHHHHHHTTCEEE T ss_pred CCCCCCCHHHHHHH--HHCCCCEEEECCCCH------HHHHHHHHCCCEEE T ss_conf 76765202345677--647997999644694------79999998897899 No 105 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Probab=29.08 E-value=25 Score=14.32 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=8.7 Q ss_pred HHHHHHHHHHC-CCC Q ss_conf 78899998607-996 Q gi|254780348|r 275 LKKLLTILVGR-GVT 288 (364) Q Consensus 275 l~~iL~~L~~~-gi~ 288 (364) ...+.+.+.+. |+. T Consensus 244 ~~aa~RE~~EEtGl~ 258 (341) T 2qjo_A 244 VEGMLRELKEETRLK 258 (341) T ss_dssp HHHHHHHHHHHHCCS T ss_pred HHHHHHHHHHHHCCE T ss_conf 999989999986863 No 106 >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... Probab=28.97 E-value=19 Score=15.10 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=30.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 322222333222788999986079969998123899999997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) ..+.+++.++.+...+-..+...++..+|| ||+.|-..|++ T Consensus 202 ~~i~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASl~~eF~~ 242 (248) T 1r2r_A 202 QSTRIIYGGSVTGATCKELASQPDVDGFLV-GGASLKPEFVD 242 (248) T ss_dssp HHCCEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGGSTHHHH T ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-EHHHCCHHHHH T ss_conf 865099747868628999956789897981-07867868999 No 107 >3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus} Probab=28.72 E-value=25 Score=14.28 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=16.1 Q ss_pred CCCHHHHHHHHHHCCCCEEEECCH Q ss_conf 222788999986079969998123 Q gi|254780348|r 272 CRDLKKLLTILVGRGVTSLLVEGG 295 (364) Q Consensus 272 ~~dl~~iL~~L~~~gi~~iLVEGG 295 (364) ..+++++++.|.++|+.+++|.|- T Consensus 33 k~~~~~~l~~l~~qGf~Rv~vdg~ 56 (119) T 3fpn_A 33 KGTHAKTLEDIRKQGYVRVRIDRE 56 (119) T ss_dssp CSCCHHHHHHHHHTTCCEEEETTE T ss_pred CCCHHHHHHHHHHCCCEEEEECCE T ss_conf 974899999998588529999999 No 108 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=28.68 E-value=17 Score=15.46 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=21.8 Q ss_pred CCHHHHHHHHHHCCCCEEEEC------CHHHHHHHHHHCCCCCEEEEEEE Q ss_conf 227889999860799699981------23899999997889889999960 Q gi|254780348|r 273 RDLKKLLTILVGRGVTSLLVE------GGAAVAHSFINSRLVDSIILYRS 316 (364) Q Consensus 273 ~dl~~iL~~L~~~gi~~iLVE------GG~~l~~sfl~~~LvDEl~ifia 316 (364) ..+...-+.|.++|.++|.+= .|+. ...|+...+|+++.+=+ T Consensus 230 gTi~~aa~~Lk~~GA~~V~~~~THglfs~~a--~e~l~~s~i~~iv~TdT 277 (319) T 3dah_A 230 GTLCKAAQVLKERGAKQVFAYATHPVLSGGA--ADRIAASALDELVVTDT 277 (319) T ss_dssp HHHHHHHHHHHHTTCSCEEEEEEEECCCTTH--HHHHHTSSCSEEEEESS T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHH--HHHHHHCCCCEEEECCC T ss_conf 0199999999977998648997466448079--99986189998998789 No 109 >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 Probab=28.58 E-value=9.7 Score=17.08 Aligned_cols=40 Identities=33% Similarity=0.583 Sum_probs=27.2 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 22222333222788999986079969998123899999997 Q gi|254780348|r 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 264 ~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) .+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++ T Consensus 206 ~v~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASL~~~F~~ 245 (255) T 1b9b_A 206 SIRILYGGSIKPDNFLGLIVQKDIDGGLV-GGASLKESFIE 245 (255) T ss_dssp HSEEEEESSCCHHHHTTTSSSTTCCEEEE-SGGGTSTHHHH T ss_pred CCEEEECCCCCHHHHHHHHCCCCCCEEEE-CCHHCCHHHHH T ss_conf 53189888898758999856889997886-22207878999 No 110 >1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans c-125} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Probab=28.35 E-value=21 Score=14.81 Aligned_cols=44 Identities=18% Similarity=0.019 Sum_probs=25.2 Q ss_pred CCCCCCCCCE---EEEEEECCEEEEE-EECCCCCCC-HHHHHHHHHHCCH Q ss_conf 8821888964---7999869989999-843887698-4899999973001 Q gi|254780348|r 22 VGLTSTNPSV---ACLIVKDGIVIGR-GVTAYGGCP-HAEVQALEEAGEE 66 (364) Q Consensus 22 ~g~t~pNP~V---g~viv~~g~ii~~-g~~~~~G~~-HAE~~al~~~~~~ 66 (364) .|.+.+||=- |.|+..+|+.+-. |.- ..++. -||..|+-.|=+. T Consensus 17 DGa~~GNPG~~G~g~v~~~~~~~~~~~g~~-~~~TNN~aEl~Aii~aL~~ 65 (142) T 1zbf_A 17 DVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRY 65 (142) T ss_dssp EEEECSSSEEEEEEEEETTTCCEEEECCCE-EEECHHHHHHHHHHHHHHH T ss_pred EECCCCCCCCEEEEEEEEECCEEEEEECCC-CCCCCHHHHHHHHHHHHHH T ss_conf 412599985689999997099899996787-8876379999999999999 No 111 >3clq_A Uncharacterized protein; APC29596.3, conserved protein of unknown function, structural genomics, PSI-2, protein structure initiative; 2.50A {Enterococcus faecalis V583} Probab=27.73 E-value=20 Score=15.04 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=19.1 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHC Q ss_conf 6988999057321157521055565301 Q gi|254780348|r 68 RGATAYVTLEPCSHYGRSPPCAQFIIEC 95 (364) Q Consensus 68 ~~atlyvtLEPC~h~GktppC~~~ii~~ 95 (364) +|. ++|+||-|++--+|-+--+.-+ T Consensus 88 sG~---I~~~Pch~~~aVgPMaGV~Sps 112 (421) T 3clq_A 88 SGA---ITFSPCHEHDAVGSMAGVTSPN 112 (421) T ss_dssp TTC---SEEEEGGGGTBCCSTTCCBCTT T ss_pred CCC---CEEECCCCCCCCCCCCCCCCCC T ss_conf 799---6885665468744542126898 No 112 >2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Probab=27.34 E-value=18 Score=15.31 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=31.9 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 055565301343246630101211012433110018988962 Q gi|254780348|r 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 (364) Q Consensus 87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~ 128 (364) .+.+++-..|+||+.+.+-=| +.++.+-+++|+++|++|.. T Consensus 136 Ai~~AL~~lgakrIallTPY~-~~v~~~~~~~~~~~G~eV~~ 176 (273) T 2xed_A 136 ALVEGLRALDAQRVALVTPYM-RPLAEKVVAYLEAEGFTISD 176 (273) T ss_dssp HHHHHHHHTTCCEEEEEECSC-HHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCCCEEEECCCC-HHHHHHHHHHHHHCCEEEEE T ss_conf 999999964998579974797-89999999999967823655 No 113 >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* Probab=27.13 E-value=15 Score=15.85 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=29.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH Q ss_conf 32222233322278899998607996999812389999999 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364) ..+.+++.++.+++.+-+.+...++..+|| ||+.|-..|+ T Consensus 205 ~~i~iLYGGSV~~~N~~~i~~~~~vDG~LV-GgASl~~eF~ 244 (251) T 2vxn_A 205 AKLRILYGGSVNAANAATLYAKPDINGFLV-GGASLKPEFR 244 (251) T ss_dssp HHCEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTTHH T ss_pred CCCEEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH T ss_conf 761089678888779999956889896885-2154587899 No 114 >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* Probab=26.93 E-value=27 Score=14.07 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=14.5 Q ss_pred CEEEEECCCCCCCCCCCC--CCCCCCCCCEEE Q ss_conf 324663010121101243--311001898896 Q gi|254780348|r 98 RRVVVCVDDPDVRVSGRG--LQWLSQKGIIVD 127 (364) Q Consensus 98 k~Vvi~~~DPnp~v~gkG--i~~L~~~GI~V~ 127 (364) ++|++|+.--+...-|.- ...|+.+|.+|. T Consensus 4 ~kVvi~~~~~D~H~lG~~~va~~l~~~G~~V~ 35 (137) T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVV 35 (137) T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEE T ss_conf 87999946987458999999999998798799 No 115 >3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Probab=26.90 E-value=19 Score=15.19 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=27.9 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 05556530134324663010121101243311001898896 Q gi|254780348|r 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 (364) Q Consensus 87 pC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~ 127 (364) .+.+++-..|+||+-+.+.=| +.++.+.+.+|+++|++|. T Consensus 107 A~~~Al~~lg~krIav~tPY~-~~~~~~~~~~~~~~G~~V~ 146 (240) T 3ixl_A 107 AVLNGLRALGVRRVALATAYI-DDVNERLAAFLAEESLVPT 146 (240) T ss_dssp HHHHHHHHTTCSEEEEEESSC-HHHHHHHHHHHHHTTCEEE T ss_pred HHHHHHHHCCCCCEEECCCCH-HHHHHHHHHHHHHCCCCCC T ss_conf 999999980998645436764-8999999999997398623 No 116 >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Probab=26.58 E-value=26 Score=14.17 Aligned_cols=18 Identities=33% Similarity=0.735 Sum_probs=14.7 Q ss_pred EEEEEECCEEEEEEECCC Q ss_conf 799986998999984388 Q gi|254780348|r 32 ACLIVKDGIVIGRGVTAY 49 (364) Q Consensus 32 g~viv~~g~ii~~g~~~~ 49 (364) |+|+++||+|++.|-... T Consensus 51 ~~V~I~dGrI~~Ig~~~~ 68 (468) T 3lnp_A 51 HCLLIKDGIILAIEPQSS 68 (468) T ss_dssp EEEEEETTEEEEEEETTT T ss_pred CEEEEECCEEEEEECCCC T ss_conf 399999999999708988 No 117 >2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis} Probab=26.38 E-value=28 Score=14.00 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=12.2 Q ss_pred CHHHHHHHHHHCCCCEEEECCH Q ss_conf 2788999986079969998123 Q gi|254780348|r 274 DLKKLLTILVGRGVTSLLVEGG 295 (364) Q Consensus 274 dl~~iL~~L~~~gi~~iLVEGG 295 (364) +..++|..|.++|| .+++||| T Consensus 6 s~~~lL~~l~~~GI-~L~~e~~ 26 (78) T 2jug_A 6 SAGALLAHAASLGV-RLWVEGE 26 (78) T ss_dssp SHHHHHHHHHHHTC-EEEEETT T ss_pred HHHHHHHHHHHCCC-EEEEECC T ss_conf 09999999998898-8999899 No 118 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=26.35 E-value=19 Score=15.07 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=12.1 Q ss_pred HHHHHHHHHHCCCCEEEECCH Q ss_conf 788999986079969998123 Q gi|254780348|r 275 LKKLLTILVGRGVTSLLVEGG 295 (364) Q Consensus 275 l~~iL~~L~~~gi~~iLVEGG 295 (364) ..++++.+.++|++.+++..| T Consensus 71 ~~~~v~e~~~~g~k~vw~q~G 91 (122) T 3ff4_A 71 QLSEYNYILSLKPKRVIFNPG 91 (122) T ss_dssp HGGGHHHHHHHCCSEEEECTT T ss_pred HHHHHHHHHHCCCCEEEEECC T ss_conf 899999998539999999369 No 119 >2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas} Probab=26.18 E-value=17 Score=15.44 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=8.6 Q ss_pred CCCCCCCCCCCCCCCCEEEEECC Q ss_conf 54235443444434421576446 Q gi|254780348|r 204 DPELTCRLNGLQEHSPMRIILDP 226 (364) Q Consensus 204 nP~Lt~R~~~~~~~~P~riVld~ 226 (364) ++.|+.|+..--++.|.-.|+|. T Consensus 13 ~~~l~s~V~~HFG~A~~F~I~d~ 35 (120) T 2wfb_A 13 GPGLDGLVDPRFGRAAGFVVVDA 35 (120) T ss_dssp SSSTTSBBCSCSTTCSEEEEEET T ss_pred CCCCCCCCCCCCCCCCEEEEEEE T ss_conf 99865541210266788999993 No 120 >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ... Probab=25.80 E-value=18 Score=15.30 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=30.3 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHH Q ss_conf 32222233322278899998607996999812389999999 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl 303 (364) ..+.+++.++.+++.+-+.+...++..+|| ||+.|-..|+ T Consensus 204 ~~i~ilYGGSV~~~N~~~i~~~~~vDG~LV-GgASl~~eF~ 243 (250) T 2j27_A 204 GELRILYGGSVNGKNARTLYQQRDVNGFLV-GGASLKPEFV 243 (250) T ss_dssp HHCCEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGGSTTHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHH T ss_conf 787489568989879999967899996884-3364687999 No 121 >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum usda 110} SCOP: b.92.1.4 c.1.9.9 Probab=25.54 E-value=29 Score=13.90 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.5 Q ss_pred EEEEEECCEEEEEEE Q ss_conf 799986998999984 Q gi|254780348|r 32 ACLIVKDGIVIGRGV 46 (364) Q Consensus 32 g~viv~~g~ii~~g~ 46 (364) |+|+++||+|++.|- T Consensus 36 GaV~I~dG~I~aVG~ 50 (475) T 2ood_A 36 GLMVVTDGVIKAFGP 50 (475) T ss_dssp EEEEEESSBEEEEEE T ss_pred CEEEEECCEEEEEEC T ss_conf 089998999999817 No 122 >3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} Probab=25.27 E-value=29 Score=13.87 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=32.2 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH-HHHH Q ss_conf 32222233322278899998607996999812389999-9997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH-SFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~-sfl~ 304 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-. .|.+ T Consensus 231 ~~v~ILYGGSV~~~N~~~l~~~~~vDG~LV-GgASL~~e~F~~ 272 (283) T 3gvg_A 231 DTVRVLYGGSVNAKNVGDIVAQDDVDGGLV-GGASLDGEHFAT 272 (283) T ss_dssp TTCCEEECSCCCTTTHHHHHTSTTCCEEEE-CGGGGSHHHHHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH T ss_conf 777589548889869999956889885883-156568799999 No 123 >1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Probab=25.05 E-value=20 Score=14.94 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=18.0 Q ss_pred CCCCHHHHHHHHC-CCCEEEEECCCCCCCCCC Q ss_conf 7521055565301-343246630101211012 Q gi|254780348|r 83 GRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG 113 (364) Q Consensus 83 GktppC~~~ii~~-gIk~Vvi~~~DPnp~v~g 113 (364) =||||-+..|.++ ||++ |+.+|+....| T Consensus 5 ~ktPP~s~llkkaagi~k---Gs~~p~~~~vG 33 (76) T 1hc8_A 5 TKTPPAAVLLKKAAGIES---GSGEPNRNKVA 33 (76) T ss_dssp CCCCCHHHHHHHHHTCSC---CCSSTTTCCCE T ss_pred ECCCCHHHHHHHHHCCCC---CCCCCCCEEEE T ss_conf 758988999999978887---78998871556 No 124 >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.60A {Bartonella henselae} Probab=24.97 E-value=27 Score=14.07 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=31.4 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH-HHHH Q ss_conf 32222233322278899998607996999812389999-9997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH-SFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~-sfl~ 304 (364) ..+.+++.++.+.+.+-+.+...++..+|| ||+.|-. +|++ T Consensus 226 ~~v~ILYGGSV~~~N~~~i~~~~~vDG~LV-GgASL~~e~F~~ 267 (275) T 3kxq_A 226 AKIRLLYGGSVKPSNAFELLSTAHVNGALI-GGASLKAIDFLT 267 (275) T ss_dssp TTSCEEECSCCCTTTHHHHHTSTTCCEEEE-SGGGSSHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH T ss_conf 781099707899879999956889897993-256579899999 No 125 >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A Probab=24.70 E-value=30 Score=13.82 Aligned_cols=41 Identities=27% Similarity=0.457 Sum_probs=29.7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHH-HHHHH Q ss_conf 3222223332227889999860799699981238999-99997 Q gi|254780348|r 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA-HSFIN 304 (364) Q Consensus 263 ~~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~-~sfl~ 304 (364) ..+.+++.++.+++.+-+.+...++..+|| ||+.|- .+|.+ T Consensus 203 ~~i~ilYGGSV~~~N~~~i~~~~~vDG~LV-G~ASl~~~~F~~ 244 (252) T 2btm_A 203 EAIRIQYGGSVKPDNIRDFLAQQQIDGALV-GGASLEPASFLQ 244 (252) T ss_dssp TTSEEEEESSCCTTTHHHHHTSTTCCEEEE-SGGGSSHHHHHH T ss_pred CCCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHHH T ss_conf 566189817788605999956899885884-356568899999 No 126 >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Probab=24.35 E-value=30 Score=13.76 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=33.2 Q ss_pred CCCHHHHHHHHCCCCEEEEECCCCCCCC----CC---------CCCCCCCCCCCEEE Q ss_conf 5210555653013432466301012110----12---------43311001898896 Q gi|254780348|r 84 RSPPCAQFIIECGIRRVVVCVDDPDVRV----SG---------RGLQWLSQKGIIVD 127 (364) Q Consensus 84 ktppC~~~ii~~gIk~Vvi~~~DPnp~v----~g---------kGi~~L~~~GI~V~ 127 (364) -|+.=++.+.++|+.+|.|+..-++|.+ .| ++++.++++|+.|. T Consensus 107 l~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~~~~~g~~v~ 163 (340) T 1tv8_A 107 LLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVK 163 (340) T ss_dssp THHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEE T ss_pred CCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE T ss_conf 342138999984998885046776588887765105650000379999998799879 No 127 >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Probab=23.97 E-value=14 Score=16.08 Aligned_cols=10 Identities=10% Similarity=0.358 Sum_probs=4.6 Q ss_pred CHHHHHHHHC Q ss_conf 1055565301 Q gi|254780348|r 86 PPCAQFIIEC 95 (364) Q Consensus 86 ppC~~~ii~~ 95 (364) |+-.++|+++ T Consensus 40 ~~i~~aL~~a 49 (155) T 1byr_A 40 PDIMKALVAA 49 (155) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999999 No 128 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=22.59 E-value=33 Score=13.53 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=16.7 Q ss_pred HHHHHHHHHHCCCCEEEEHHHHC Q ss_conf 35666764201440366312201 Q gi|254780348|r 179 SKNQVHLLRAQSDAILVGIGTVL 201 (364) Q Consensus 179 sr~~vh~lRa~~DaIlvG~~Tv~ 201 (364) +.+....++..+|+|+..++|.. T Consensus 41 ~~~iA~~l~~~~DVIISRGgTa~ 63 (196) T 2q5c_A 41 ASKIAFGLQDEVDAIISRGATSD 63 (196) T ss_dssp HHHHHHHHTTTCSEEEEEHHHHH T ss_pred HHHHHHHHHCCCCEEEECCHHHH T ss_conf 99999975439879998965899 No 129 >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* Probab=22.54 E-value=12 Score=16.59 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=25.0 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH Q ss_conf 22222333222788999986079969998123899999997 Q gi|254780348|r 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 (364) Q Consensus 264 ~v~vi~~~~~dl~~iL~~L~~~gi~~iLVEGG~~l~~sfl~ 304 (364) .+.+++.++.+.+.+-+.+...++..+|| ||+.|-..|++ T Consensus 202 ~i~iLYGGSV~~~N~~~i~~~~~iDG~LV-G~ASl~~eF~~ 241 (247) T 1ney_A 202 ELRILYGGSANGSNAVTFKDKADVDGFLV-GGASLKPEFVD 241 (247) T ss_dssp HCCEEEESSCCTTTGGGGTTCTTCCEEEE-SGGGGSTHHHH T ss_pred CCCEEECCCCCHHHHHHHHCCCCCCEEEE-CHHHCCHHHHH T ss_conf 76188778889779999956889995894-03757858999 No 130 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=22.48 E-value=27 Score=14.13 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=18.4 Q ss_pred CCHHHHHHHHHHHHCC-CCEEEEHHHHCC Q ss_conf 2101356667642014-403663122013 Q gi|254780348|r 175 TGFISKNQVHLLRAQS-DAILVGIGTVLA 202 (364) Q Consensus 175 T~~~sr~~vh~lRa~~-DaIlvG~~Tv~~ 202 (364) +++.+......+|... +-+++|++||+. T Consensus 44 ~~p~a~~~I~~l~~~~~~~~~vGaGTV~~ 72 (205) T 1wa3_A 44 TVPDADTVIKELSFLKEKGAIIGAGTVTS 72 (205) T ss_dssp TSTTHHHHHHHTHHHHHTTCEEEEESCCS T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 99768999999997318982896300012 No 131 >2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Probab=21.81 E-value=26 Score=14.15 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=5.2 Q ss_pred HHHHHHHHHCCCC Q ss_conf 8899998607996 Q gi|254780348|r 276 KKLLTILVGRGVT 288 (364) Q Consensus 276 ~~iL~~L~~~gi~ 288 (364) .++.+.|.++||. T Consensus 81 ~~~~~~l~~~gI~ 93 (132) T 2gm2_A 81 TDVLAACLTRGIG 93 (132) T ss_dssp HHHHHHHHHHTCE T ss_pred HHHHHHHHHCCCE T ss_conf 9999999987997 No 132 >3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Probab=21.80 E-value=30 Score=13.79 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=27.4 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCEEEECCC Q ss_conf 5556530134324663010121101243-3110018988962221 Q gi|254780348|r 88 CAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMME 131 (364) Q Consensus 88 C~~~ii~~gIk~Vvi~~~DPnp~v~gkG-i~~L~~~GI~V~~~~~ 131 (364) .+..+.+.|.+--+++..--|+ .|+- .+.|++.||+.+.+.. T Consensus 43 va~~la~LG~~v~~i~~vG~D~--~G~~i~~~L~~~gI~~~~v~~ 85 (330) T 3iq0_A 43 FIDQVTRLGVPCGIISCVGNDG--FGDINIHRLAADGVDIRGISV 85 (330) T ss_dssp HHHHHHHTTCCEEEEEEEESSH--HHHHHHHHHHHTTCBCTTEEE T ss_pred HHHHHHHCCCCEEEEEEECCCH--HHHHHHHHHHHCCCEECCCCC T ss_conf 9999998699879999947977--999999999872934103534 No 133 >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Probab=21.33 E-value=35 Score=13.37 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=34.6 Q ss_pred CCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEEC-CCCCCCCCC---CHHHHHHHHCCCCEEE Q ss_conf 888964799986998999984388769848999999730010698899905-732115752---1055565301343246 Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL-EPCSHYGRS---PPCAQFIIECGIRRVV 101 (364) Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtL-EPC~h~Gkt---ppC~~~ii~~gIk~Vv 101 (364) ...|..|+|+|+||+|++.|-... .+.+| --+++|.+++=-| .+..|.+.+ .|-.+.-...|+..++ T Consensus 21 g~~~~~~dV~I~dg~I~~VG~~~~--~~~~~-------vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~gvtt~~ 91 (480) T 3gip_A 21 GAPRRRADLGVRDGRIAAIGELGA--HPARH-------AWDASGKIVAPGFIDVHGHDDLMFVEKPDLRWKTSQGITTVV 91 (480) T ss_dssp SCCCEECEEEEETTEEEEEECCTT--SCEEE-------EEECTTSEEEECEEESSCCCTTHHHHSTTCHHHHTTTEEEEE T ss_pred CCCEEEEEEEEECCEEEEECCCCC--CCCCE-------EEECCCCEEECCCEECCCCCCCCCCCCCCHHHHHHCCEEEEE T ss_conf 995068899999999999547889--99997-------998999999367111200866334667105567637810687 Q ss_pred EE Q ss_conf 63 Q gi|254780348|r 102 VC 103 (364) Q Consensus 102 i~ 103 (364) .+ T Consensus 92 ~~ 93 (480) T 3gip_A 92 VG 93 (480) T ss_dssp EC T ss_pred EC T ss_conf 53 No 134 >2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Probab=21.04 E-value=35 Score=13.33 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=3.5 Q ss_pred HCCCCEEEEH Q ss_conf 0144036631 Q gi|254780348|r 188 AQSDAILVGI 197 (364) Q Consensus 188 a~~DaIlvG~ 197 (364) ...|.+++|. T Consensus 60 ~~peilliGt 69 (122) T 2ab1_A 60 KGVQTLVIGR 69 (122) T ss_dssp TCCSEEEEEE T ss_pred CCCCEEEEEC T ss_conf 5999999928 No 135 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Probab=20.48 E-value=17 Score=15.50 Aligned_cols=12 Identities=8% Similarity=0.338 Sum_probs=6.2 Q ss_pred CCCHHHHHHHHC Q ss_conf 521055565301 Q gi|254780348|r 84 RSPPCAQFIIEC 95 (364) Q Consensus 84 ktppC~~~ii~~ 95 (364) -|+|++...... T Consensus 82 ~t~~~~r~~~~~ 93 (434) T 1wu7_A 82 ATPSTVRMVTSR 93 (434) T ss_dssp SHHHHHHHHTTC T ss_pred CCHHHHHHHHHH T ss_conf 799999999764 No 136 >3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus} Probab=20.47 E-value=36 Score=13.25 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.2 Q ss_pred CCCCHHHHHHHHHHCCCCEEEECCHHH-HHHHHHHCCCCC Q ss_conf 322278899998607996999812389-999999788988 Q gi|254780348|r 271 DCRDLKKLLTILVGRGVTSLLVEGGAA-VAHSFINSRLVD 309 (364) Q Consensus 271 ~~~dl~~iL~~L~~~gi~~iLVEGG~~-l~~sfl~~~LvD 309 (364) ...+|...++.+.+.|+ +++||-||. .++.+++.-+=| T Consensus 259 ~pV~f~~~i~~l~~~g~-~~fIEiGP~~~Ls~~i~~~~~~ 297 (316) T 3im9_A 259 SPVQFINSTEWLIDQGV-DHFIEIGPGKVLSGLIKKINRD 297 (316) T ss_dssp SCEEHHHHHHHHHHTTE-EEEEEESSSCHHHHHHHHHCSS T ss_pred CEEEHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC T ss_conf 32809999999997699-9999919819999999998189 No 137 >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Probab=20.28 E-value=36 Score=13.22 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=31.4 Q ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 1055565301343246630101211012433110018988962 Q gi|254780348|r 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 (364) Q Consensus 86 ppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~ 128 (364) ....+.+++.|++-|.++.-+|.+ -++.++++|+.|.. T Consensus 78 ~~~~~~~~~~~v~~v~~~~g~p~~-----~~~~~~~~g~~v~~ 115 (332) T 2z6i_A 78 EDIVDLVIEEGVKVVTTGAGNPSK-----YMERFHEAGIIVIP 115 (332) T ss_dssp HHHHHHHHHTTCSEEEECSSCGGG-----THHHHHHTTCEEEE T ss_pred HHHHHHHHHCCCCEEEECCCCCHH-----HHHHHHHHCCEEEE T ss_conf 999999986699889982889799-----99999970988985 No 138 >2axw_A DRAD invasin; homodimer, beta-sandwich, immunoglobulin-like fold, swapped C-terminal strands, cell invasion; HET: GOL; 1.05A {Escherichia coli} SCOP: b.2.3.2 Probab=20.11 E-value=33 Score=13.50 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=14.6 Q ss_pred CEEEEECCCCCCCHHHHHCCC Q ss_conf 215764466899802210034 Q gi|254780348|r 219 PMRIILDPHFKLSLDSKIIKT 239 (364) Q Consensus 219 P~riVld~~l~i~~~~~l~~~ 239 (364) +..|+.|.+.+++++..+|.- T Consensus 92 ~FdVv~DGnQ~v~~D~Y~lsv 112 (134) T 2axw_A 92 FFDVMADGNQDIAPGEYRFSV 112 (134) T ss_dssp EEEEEESSSBCCCSEEEEEEE T ss_pred EEEEEEECCEECCCCEEEEEE T ss_conf 799998498872798699998 Done!