HHSEARCH alignment of GI: 254780348 and SCOP domain: d1alna1

Alignment
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}
Probab=95.61  E-value=0.033  Score=32.15  Aligned_cols=79  Identities=28%  Similarity=0.315  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC------CCCHHHHHHHHHH---CCHHCCCEEEEECCCC
Q ss_conf             999999999870882188896479998-69989999843887------6984899999973---0010698899905732
Q gi|254780348|r   10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG------GCPHAEVQALEEA---GEEARGATAYVTLEPC   79 (364)
Q Consensus        10 ~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~------G~~HAE~~al~~~---~~~~~~atlyvtLEPC   79 (364)
                      .+...+.+|......-.-|=.|||++. ++|+|. .|.....      .+-|||..||.++   |+. +-.+++|+.-||
T Consensus        52 l~~~llp~Aa~~AyaPyS~F~VGAa~~~~~G~iy-~G~NvE~~nas~~~sicAEr~Ai~~a~~~G~~-~i~~i~v~~sPC  129 (150)
T d1alna1          52 LAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEK-ALAAITVNYTPC  129 (150)
T ss_dssp             HHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCC-CEEEEEESSCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEE-EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC-CEEEEEEECCCC
T ss_conf             9999999999856598789856899992899999-98851146775677778999999999864898-346999975897


Q ss_pred             CCCCCCCHHHHHHHHCC
Q ss_conf             11575210555653013
Q gi|254780348|r   80 SHYGRSPPCAQFIIECG   96 (364)
Q Consensus        80 ~h~GktppC~~~ii~~g   96 (364)
                      -|      |-+.|.+..
T Consensus       130 G~------CRQ~m~E~~  140 (150)
T d1alna1         130 GH------CRQFMNELN  140 (150)
T ss_dssp             HH------HHHHHTTBT
T ss_pred             HH------HHHHHHHHC
T ss_conf             66------889999966


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]