HHSEARCH alignment of GI: 254780348 and SCOP domain: d1alna2

Alignment
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}
Probab=97.79  E-value=2.1e-05  Score=53.76  Aligned_cols=98  Identities=16%  Similarity=0.096  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC---CCCHHHHHHHHHH---CCHHCCCEEEEECC
Q ss_conf             78999999999999870882188896479998-69989999843887---6984899999973---00106988999057
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG---GCPHAEVQALEEA---GEEARGATAYVTLE   77 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~---G~~HAE~~al~~~---~~~~~~atlyvtLE   77 (364)
                      ..|..+++.|++.|++..--.+..| |||++. +||+|+.-.+....   -+-|||..||.++   |.+..+-...|.+|
T Consensus        36 ~~~d~L~~~A~~aa~~ayaPYS~~~-vGaal~~~~G~i~~G~nvEnaa~~~slcAE~~Ai~~av~~G~~~~~I~~~v~ve  114 (144)
T d1alna2          36 LTGDALSQAAIAAANRSHMPYSKSP-SGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAE  114 (144)
T ss_dssp             CCSSHHHHHHHHHHHTCBCTTTCCC-EEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCC-CEEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEE
T ss_conf             6879999999999984629878985-158999679999997631135567885589999999998499956879999982


Q ss_pred             ----CCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             ----32115752105556530134324663
Q gi|254780348|r   78 ----PCSHYGRSPPCAQFIIECGIRRVVVC  103 (364)
Q Consensus        78 ----PC~h~GktppC~~~ii~~gIk~Vvi~  103 (364)
                          ||+|.|.+..|...|-...++.|+++
T Consensus       115 ~~~~~is~~~~~r~~l~~~~~~~~~~v~l~  144 (144)
T d1alna2         115 KADAPLIQWDATSATLKALGCHSIDRVLLA  144 (144)
T ss_dssp             CTTCSSCCHHHHHHHHHHHTCCCEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             799987838999999998667787289839


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]