HHSEARCH alignment of GI: 254780348 and SCOP domain: d1p6oa_

Alignment
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97  E-value=8.8e-31  Score=224.97  Aligned_cols=131  Identities=27%  Similarity=0.434  Sum_probs=115.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE--ECCEEEEEEECCC----CCCCHHHHHHHHHHCC----HHCCCEE
Q ss_conf             8778999999999999870882188896479998--6998999984388----7698489999997300----1069889
Q gi|254780348|r    3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAY----GGCPHAEVQALEEAGE----EARGATA   72 (364)
Q Consensus         3 ~~~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv--~~g~ii~~g~~~~----~G~~HAE~~al~~~~~----~~~~atl   72 (364)
                      .|..|++||+.|+++|+++  ...++++||||||  ++|+||++||+..    .+.+|||++||++|..    .++|+||
T Consensus         5 ~~~~D~~~M~~A~~~A~~a--~~~g~~PvGaviV~~~~g~Iia~g~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~l~~~tl   82 (156)
T d1p6oa_           5 ASKWDQKGMDIAYEEAALG--YKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTL   82 (156)
T ss_dssp             CCTTHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEE
T ss_pred             CCHHHHHHHHHHHHHHHHH--HHCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf             7299999999999999988--77699988999999179989999705665456654332889998873036543223378


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             990573211575210555653013432466301012110124331100189889622210123200122220
Q gi|254780348|r   73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR  144 (364)
Q Consensus        73 yvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~  144 (364)
                      |||||||      |+|+.+|+++||+|||||..|   ...|+|.+.|+.+|++|.++++++|.+|++.||..
T Consensus        83 yvTlEPC------~mC~~ai~~~gI~rVv~G~~~---~~~~~g~~~L~~~~~~v~~v~~~ec~~Ll~~Ff~~  145 (156)
T d1p6oa_          83 YTTLSPC------DMCTGAIIMYGIPRCVVGENV---NFKSKGEKYLQTRGHEVVVVDDERCKKIMKQFIDE  145 (156)
T ss_dssp             EEEECCC------HHHHHHHHHHTCCEEEEEESS---SCCCTHHHHHHHTTCEEEECCCHHHHHHHHHHHHH
T ss_pred             EEECCCC------HHHHHHHHHHCCCEEEECCCC---CCCCCHHHHHHCCCEEEEEECHHHHHHHHHHHHHH
T ss_conf             8505687------789999998099989991799---98865589861488278545799999999999997


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]