HHSEARCH alignment of GI: 254780348 and SCOP domain: d1vq2a_

Alignment
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]}
Probab=99.95  E-value=1.3e-27  Score=203.69  Aligned_cols=128  Identities=27%  Similarity=0.350  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCC-C----------------------------------
Q ss_conf             99999999999987088218889647999869989999843887-6----------------------------------
Q gi|254780348|r    7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-G----------------------------------   51 (364)
Q Consensus         7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~-G----------------------------------   51 (364)
                      .+.||+.|+..|++.   +-|+..||||||+||+|||+||+..+ |                                  
T Consensus         3 ~~~~M~~A~~~A~rS---~c~~~~VGAVIV~~~~IIs~G~Ng~p~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (193)
T d1vq2a_           3 ASTVLQIAYLVSQES---KCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFG   79 (193)
T ss_dssp             HHHHHHHHHHHHTTC---CCSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-----------------
T ss_pred             HHHHHHHHHHHHHHC---CCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCC
T ss_conf             899999999999768---99899868999989989998606886788765420244321103310011101222112232


Q ss_pred             ----------------------CCHHHHHHHHHHC---CHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf             ----------------------9848999999730---010698899905732115752105556530134324663010
Q gi|254780348|r   52 ----------------------CPHAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD  106 (364)
Q Consensus        52 ----------------------~~HAE~~al~~~~---~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~D  106 (364)
                                            ..|||++||.+|.   ....|+|||||+|||      ++|+.+|+++||+||||+..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~HAE~nai~~a~~~~~~~~~~~ly~t~~PC------~~Ca~~i~~~gI~~V~~~~~~  153 (193)
T d1vq2a_          80 STDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCETY  153 (193)
T ss_dssp             ---CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCC------HHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCC------HHHHHHHHHCCCCEEEEEECC
T ss_conf             21100000013443211257898689999999877607787775477258996------789999985157889997279


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             121101243311001898896222101232001222201
Q gi|254780348|r  107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ  145 (364)
Q Consensus       107 Pnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~  145 (364)
                      |+.  .++|+++|+++||+|..+.++++.++|..||...
T Consensus       154 ~~~--~~~~~~~l~~~gI~v~~i~~~~~~~l~~~~~~~~  190 (193)
T d1vq2a_         154 DKN--KPGWDDILRNAGIEVFNVPKKNLNKLNWENINEF  190 (193)
T ss_dssp             TTC--CTTTTHHHHHTTCEEEECCGGGCCSSCGGGCCCB
T ss_pred             CCC--CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf             985--4789999998799899539999999989999998


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]